Correlation between gene mutation status and molecular subtypes
Colon Adenocarcinoma (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
doi:10.7908/C1NZ870J
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1NZ870J
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 1907 genes and 12 molecular subtypes across 367 patients, 4767 significant findings detected with P value < 0.05 and Q value < 0.25.

  • APC mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TP53 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ARID1A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • RNF43 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SOX9 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • FAM123B mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • TXNDC2 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • ACVR1B mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • B2M mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • BCOR mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CDH1 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MLH1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • NTAN1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZFP36L2 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • WNT1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • BMPR2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SELPLG mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CRIPAK mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • KDM6A mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MAPK6 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • FMN2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • STARD3NL mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • NF2 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NF1 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • OR4D10 mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CNMF'.

  • PRKDC mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MGA mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • P2RY13 mutation correlated to 'CN_CNMF'.

  • MVK mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ATXN3L mutation correlated to 'MIRSEQ_CNMF'.

  • FBXW7 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • DIP2B mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • RBMX mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SMAD2 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • ASXL1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ALG12 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.

  • NR1H3 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • ZBTB20 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MPHOSPH10 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • TPRKB mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PLAGL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • IDH1 mutation correlated to 'MRNA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SETD2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GPATCH8 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ALPK2 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C11ORF30 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RPTN mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ROS1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • EGR1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PTEN mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CTNNB1 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • RBM44 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • ECT2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • DDX26B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • UBQLN2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • THOC7 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • TOP2B mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • RB1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ALDH1A3 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GMPS mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'RPPA_CNMF'.

  • L1TD1 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • NLRC4 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZDHHC7 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • DCLK2 mutation correlated to 'MRNA_CNMF' and 'RPPA_CNMF'.

  • C2ORF29 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PTCH1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • LINGO4 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PIK3R1 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • C14ORF43 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C14ORF184 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • ATP6V1B1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • BCL9 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NAA25 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC26A8 mutation correlated to 'CN_CNMF'.

  • CHD3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PLEKHF2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FKBP9 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • HPS3 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • ATM mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CYLD mutation correlated to 'RPPA_CNMF'.

  • GGT1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • MAP4K3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PRPS1 mutation correlated to 'MIRSEQ_CNMF'.

  • KCTD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • BCORL1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • IDH2 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • TMEM126A mutation correlated to 'MRNASEQ_CNMF'.

  • GRB2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PLXNA3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C15ORF52 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PCBP1 mutation correlated to 'MIRSEQ_CNMF'.

  • SMAD4 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • XYLT2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FAHD2B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • RSPH3 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PKD2L1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CDK12 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CASP8 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KCNK1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PTK2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • FYN mutation correlated to 'CN_CNMF'.

  • CDX2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KLK10 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • TPM4 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PIK3IP1 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • USP24 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GGTLC2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZFYVE26 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MLLT6 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • RNF128 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TNMD mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GPR174 mutation correlated to 'RPPA_CNMF'.

  • CD58 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • HTR2A mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • EHBP1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF583 mutation correlated to 'CN_CNMF'.

  • ATP11B mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • NCAPD2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FNDC7 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SVIL mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • LARP4B mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • THOC5 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • GIGYF2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • DNAH12 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ARFGEF1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SENP6 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CAB39L mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • WEE1 mutation correlated to 'CN_CNMF'.

  • ZFX mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ASNSD1 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • KLC4 mutation correlated to 'MRNA_CHIERARCHICAL'.

  • GLI1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CRY1 mutation correlated to 'RPPA_CNMF'.

  • FGFR3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PDGFRA mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • HLA-A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • SCAI mutation correlated to 'CN_CNMF'.

  • MEN1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FAM179A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MLL2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FGFR2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC4A10 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RAF1 mutation correlated to 'CN_CNMF'.

  • FAM9A mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • F8 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TUBE1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • OXSM mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • FHOD3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MMP8 mutation correlated to 'MIRSEQ_CNMF'.

  • SGK269 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CLSPN mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • LATS1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SCD5 mutation correlated to 'CN_CNMF'.

  • DDX5 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TAF7L mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ERBB4 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • KLHL10 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FBLN5 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PSD mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • EP400 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DHRS7 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF486 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CLEC4F mutation correlated to 'CN_CNMF'.

  • MMP13 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KRT2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC12A6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PRKCH mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • TUBA4A mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ZFC3H1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FRMPD4 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PRRG1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PAQR5 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PPP1R12B mutation correlated to 'MRNA_CNMF'.

  • TFE3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SNAI2 mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CNMF'.

  • B4GALNT4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • HIPK2 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SHROOM4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • DDX43 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • LHCGR mutation correlated to 'MIRSEQ_CNMF'.

  • USP34 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ERCC5 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HIST1H1T mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KDM5B mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • RAG1AP1 mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • CNIH4 mutation correlated to 'MRNASEQ_CNMF'.

  • TRIM13 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SNTN mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.

  • SLC28A2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • OR2M3 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MLL3 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FIGNL1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • MYEOV mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • EFHC2 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • MYL1 mutation correlated to 'MIRSEQ_CNMF'.

  • C12ORF5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZNF280B mutation correlated to 'CN_CNMF'.

  • MIER3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SCLT1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • ERBB2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RASAL2 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • OSBPL2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GMCL1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF789 mutation correlated to 'RPPA_CNMF'.

  • SPR mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • C2ORF77 mutation correlated to 'CN_CNMF'.

  • NT5DC3 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ITPR1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • AKAP3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • TNFAIP3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • GFI1 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • TWISTNB mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ASB11 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ETAA1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NUP188 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • GNPAT mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • HAS2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MKL2 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PCSK1 mutation correlated to 'METHLYATION_CNMF'.

  • TIAL1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NBEA mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • F2RL1 mutation correlated to 'RPPA_CNMF'.

  • ALG2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • C12ORF40 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GNAS mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • RUNX1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FAM133B mutation correlated to 'CN_CNMF'.

  • CARD11 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • IFT57 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC9A10 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • VAV2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CBL mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SOX7 mutation correlated to 'CN_CNMF'.

  • ARHGAP5 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RAB28 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • UBR4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TRIP11 mutation correlated to 'CN_CNMF'.

  • ZBTB7C mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ABCC4 mutation correlated to 'CN_CNMF'.

  • CENPF mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MYO3B mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • G3BP2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MBD6 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TTF1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RNF182 mutation correlated to 'MRNASEQ_CNMF'.

  • RBBP7 mutation correlated to 'MRNA_CNMF'.

  • MAGEA1 mutation correlated to 'MIRSEQ_CNMF'.

  • HEPACAM2 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • DHX35 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • BRCA2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • IFIT2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MUC17 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • TET3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TOB1 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • TSHR mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • C14ORF102 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • EXOC4 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • RPS6KA3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MST4 mutation correlated to 'MIRSEQ_CNMF'.

  • RIF1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SAPS2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CEP135 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • PPP2R1A mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ECM2 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MSH2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • IL1RAPL1 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • C6ORF170 mutation correlated to 'MRNA_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • STAB2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ERBB3 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • MBTD1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ACP6 mutation correlated to 'MIRSEQ_CNMF'.

  • PRKCI mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • ANKRD50 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • IL12RB2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • GPNMB mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • GLI2 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • OR51E1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • AGFG1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • MPO mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TRRAP mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • BRAF mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GTF2B mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • DDB1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • EZH2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PRDM1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • USP26 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • OR1I1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CUL2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TMEM169 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • PIK3C2A mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • MSH6 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KRAS mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • NEXN mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MYST4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PPARGC1A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CLIP4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'METHLYATION_CNMF'.

  • PAK3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KCNS3 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • TRPM7 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • DSG1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CNMF'.

  • ZNF585A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • CDC42BPA mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • C5ORF22 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CSNK1D mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • IQSEC2 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C9ORF131 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C12ORF10 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.

  • PLEKHA6 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CYP4X1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.

  • DAXX mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CDK17 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SYNCRIP mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ENPEP mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • USP7 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CCAR1 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • SLC7A10 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GTF2IRD2 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MFN1 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • AMOT mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF449 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SMARCA4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MARK1 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • CCR2 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • NUP160 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CYLC1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MEPE mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF384 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • MOBKL2B mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • GPR112 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MET mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • BAG4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • GPR87 mutation correlated to 'MRNA_CHIERARCHICAL'.

  • RASA2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TNNI3K mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • RELN mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • USP25 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • NCOA7 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • DDX23 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • IGF2R mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TMEM92 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ODZ1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FLG2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • TRMT5 mutation correlated to 'MIRSEQ_CNMF'.

  • CHML mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • AURKA mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • LRRC23 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PHF3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CNMF'.

  • CNTNAP5 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KRT14 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • JAK2 mutation correlated to 'MRNA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ANKHD1 mutation correlated to 'CN_CNMF'.

  • ADAM18 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • KIT mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • HUWE1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • EGFR mutation correlated to 'MRNA_CHIERARCHICAL',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ATP13A5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • DKK2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PIK3CA mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • EP300 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ITGAV mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PPP1R3A mutation correlated to 'CN_CNMF'.

  • PTPN11 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KIAA1409 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • EPHA3 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MYH1 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • EEA1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • GRM8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ANKRD30A mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PTPRD mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • CSMD3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZCCHC6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FUBP3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SYT1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • OSBPL11 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • SFRS18 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TNPO1 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • CLCNKA mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CREBBP mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • INTS4 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PRKAA2 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • LNX2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • ATG2B mutation correlated to 'CN_CNMF'.

  • CHRM2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • INSM2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GOLGB1 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • KIAA1804 mutation correlated to 'CN_CNMF'.

  • C10ORF79 mutation correlated to 'CN_CNMF'.

  • DENND4A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • RBL2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • DCAF6 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HIST1H1E mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • ADK mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • RPA3 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • C9ORF84 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • IKZF4 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • MAP7D1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • LRRC39 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RING1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • N4BP2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • NRK mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PTPRK mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • E2F7 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC11A2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HIF3A mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NOX5 mutation correlated to 'CN_CNMF'.

  • WWTR1 mutation correlated to 'METHLYATION_CNMF'.

  • HGS mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NLK mutation correlated to 'RPPA_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ATP8B1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • WDR66 mutation correlated to 'CN_CNMF'.

  • GPR141 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • ATP6V1D mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • PLA2G4E mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • RAB40C mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • UGT3A2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ATAD2B mutation correlated to 'MRNASEQ_CNMF'.

  • SLC33A1 mutation correlated to 'MRNASEQ_CNMF'.

  • ABCB4 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • RUFY1 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • IBTK mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PNP mutation correlated to 'CN_CNMF'.

  • ACTL8 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • CDK14 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • AXIN2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KCNH7 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SPCS2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • TNRC6C mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • OR4E2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SULT6B1 mutation correlated to 'METHLYATION_CNMF'.

  • LDHA mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • RCSD1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • EIF5B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FGFR1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ADNP2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • IRAK3 mutation correlated to 'MRNASEQ_CNMF'.

  • KIAA0195 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • AGBL2 mutation correlated to 'MIRSEQ_CNMF'.

  • OR1J2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PTPRC mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ARMCX5 mutation correlated to 'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PPIG mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • NFASC mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PLCH2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MTDH mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RGS22 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MAP3K4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PNPLA8 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ALX4 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ULK1 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • POLM mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TGFBR1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CIC mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FBXO21 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • CCDC160 mutation correlated to 'CN_CNMF'.

  • RNF111 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RBM19 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SLFN12L mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • UPF3A mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KDM3B mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RPGRIP1L mutation correlated to 'MRNA_CNMF'.

  • RBM12 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • PALB2 mutation correlated to 'MRNA_CHIERARCHICAL',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • PCDH12 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ICOSLG mutation correlated to 'MRNASEQ_CNMF'.

  • ARNT2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MRE11A mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DUSP1 mutation correlated to 'RPPA_CNMF'.

  • SYNRG mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • LMTK3 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • RTP3 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.

  • BCL9L mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • AKAP9 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ARFIP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • RANBP17 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • ZNF280C mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SCN2A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PLEK mutation correlated to 'CN_CNMF'.

  • FAHD2A mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • SPANXN2 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • KIF21A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TAOK3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ANKRD17 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • WBP11 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • HNRNPH3 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ENTPD4 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MCCC1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ARHGAP25 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SPEN mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GPR75 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • LIG1 mutation correlated to 'MRNA_CNMF'.

  • ARHGEF10 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • OVCH1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • RRS1 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RFXAP mutation correlated to 'METHLYATION_CNMF'.

  • RBAK mutation correlated to 'MRNASEQ_CNMF'.

  • DOCK10 mutation correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.

  • CHEK2 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • USP9X mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ALDH2 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF14 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • AIFM1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • ST3GAL6 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NOVA1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • CD244 mutation correlated to 'MRNA_CNMF'.

  • ARHGEF3 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • STK36 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • FAM26E mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF182 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GNA11 mutation correlated to 'MRNASEQ_CNMF'.

  • KDM2B mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • LNPEP mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RHPN2 mutation correlated to 'MIRSEQ_CNMF'.

  • POLE mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NIPA2 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • CDH10 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FOXN3 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • REXO4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • NGEF mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GGT5 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • CXORF38 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • BST2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • SFRS15 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EIF2AK4 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • LAS1L mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CATSPER4 mutation correlated to 'MRNASEQ_CNMF'.

  • OR4M2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • HIVEP2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZC3H13 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GPR115 mutation correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.

  • NCOA6 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • LAMC1 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • DDX59 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SLC25A13 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • EXD2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ATP8B2 mutation correlated to 'CN_CNMF'.

  • TBL1XR1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SPANXC mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • HORMAD1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • TMEM131 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • PVRL4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • C12ORF49 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CWF19L2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ATAD5 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PHF21A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • BMPR1A mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TAT mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • FAS mutation correlated to 'MRNASEQ_CNMF'.

  • TXNDC17 mutation correlated to 'MIRSEQ_CNMF'.

  • SMTN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • STRADB mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ACVR2A mutation correlated to 'CN_CNMF'.

  • WT1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MTMR8 mutation correlated to 'MRNA_CHIERARCHICAL'.

  • ACTL6A mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GPR22 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MAPK9 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • APOB mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • OR4D2 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • DSG4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KIAA0319L mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PFN4 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • NOS3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MUC7 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • BCHE mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • KRT19 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • LASS3 mutation correlated to 'MRNA_CNMF'.

  • GAB1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF518B mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • C14ORF159 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • EFEMP1 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • PDP2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • C20ORF177 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • POMGNT1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SMG1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • HMCN1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CHUK mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • MYH3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ING2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • VAV3 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CNMF'.

  • LAMB4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MOV10L1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'RPPA_CNMF'.

  • CTBP2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • TM9SF2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CCDC88A mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ART5 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • ASPG mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • DOCK5 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • DNAJC16 mutation correlated to 'CN_CNMF'.

  • PHF1 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • EIF2B5 mutation correlated to 'MRNASEQ_CNMF'.

  • SR140 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ABI3BP mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CNMF'.

  • FBN2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KDM5C mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ARAP3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CHRNA3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FLT3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ERBB2IP mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • RNF145 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • KTN1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • NIPBL mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • DOCK1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CDH8 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • POLDIP3 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • KLRC3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ARMC9 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MAGEB2 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • ZNF83 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • ADAMTS4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TMEM50B mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.

  • LRRC37B mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • C19ORF66 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • WWC3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TMEM48 mutation correlated to 'CN_CNMF'.

  • EXPH5 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • MARVELD2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF721 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CNMF'.

  • PAX6 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HCRTR2 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C9ORF71 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RIMBP3 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • HELQ mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • VPS13B mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF620 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • ZNF570 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • AP1G2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CNMF'.

  • SLC22A16 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • FER mutation correlated to 'RPPA_CNMF'.

  • SCN3A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • IQGAP2 mutation correlated to 'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ALDOB mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ELFN2 mutation correlated to 'MIRSEQ_CNMF'.

  • DNAH17 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SYNE1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C1ORF35 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • POLQ mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • BAI3 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • WNK3 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • IL2RG mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • DCTN5 mutation correlated to 'MIRSEQ_CNMF'.

  • USH2A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PARP1 mutation correlated to 'CN_CNMF'.

  • CCDC141 mutation correlated to 'MRNA_CNMF' and 'METHLYATION_CNMF'.

  • OAS1 mutation correlated to 'RPPA_CNMF'.

  • KIAA0406 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • DNASE1L3 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • RANBP1 mutation correlated to 'MRNASEQ_CNMF'.

  • RBMX2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RAD51AP2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • INADL mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SLC2A3 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MLL4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MTA2 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • MDN1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • OR10G4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NEB mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PAXIP1 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • OSTM1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ESCO2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SV2A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CNMF'.

  • PSMB8 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • CAMSAP1L1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • INSRR mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • JAK3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • TMEM45A mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • OR6A2 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PTPN12 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • OR2Y1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • VASH1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MAP7D3 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SGK3 mutation correlated to 'MIRSEQ_CNMF'.

  • ARHGAP32 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • BRD8 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • DNAJC7 mutation correlated to 'CN_CNMF'.

  • ZNF180 mutation correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.

  • PCDH19 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • MACF1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MYH15 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'RPPA_CNMF'.

  • PLK2 mutation correlated to 'CN_CNMF'.

  • ZNF619 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • WNK1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TRIM54 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • GTF3C3 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SLC25A17 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GNA14 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PREX2 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • CD55 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MATN3 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SLC22A3 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • RYR2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF605 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • C1ORF168 mutation correlated to 'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • AGTR2 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • HNMT mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • PRPH2 mutation correlated to 'MRNA_CHIERARCHICAL' and 'METHLYATION_CNMF'.

  • NOD2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PTCH2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • GPR126 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • DDX17 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TOP2A mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CACNG3 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CBX3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • DLL3 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • KIFAP3 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • CRYGA mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MCF2 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.

  • ASPM mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MACC1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • YLPM1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MIA3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • SLC7A6 mutation correlated to 'MIRSEQ_CNMF'.

  • TGFBR2 mutation correlated to 'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RAB42 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PIK3C3 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FAM189B mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC24A2 mutation correlated to 'CN_CNMF'.

  • YES1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KIAA0649 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PIK3R4 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CNMF'.

  • GAPVD1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SERPINA9 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ZC3H12C mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • PRRT2 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • CHD1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZBTB33 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF691 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • CEL mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PRKCD mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SMC1B mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • AP1M1 mutation correlated to 'MIRSEQ_CNMF'.

  • CCDC55 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • MOV10 mutation correlated to 'MIRSEQ_CNMF'.

  • GRINA mutation correlated to 'CN_CNMF'.

  • CAPRIN1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • OR7C1 mutation correlated to 'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CBLL1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SNAPC1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CETN3 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • POLD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CTTN mutation correlated to 'MRNASEQ_CNMF'.

  • PIGC mutation correlated to 'RPPA_CHIERARCHICAL'.

  • CSGALNACT1 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • CACHD1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • DBN1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • CRTC1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • RRAGD mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.

  • CTNNA3 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • USP29 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • BAIAP2L1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF799 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • ATIC mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CPZ mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • NDUFAF1 mutation correlated to 'MIRSEQ_CNMF'.

  • SKIL mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ATP10B mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • NUP205 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • ALK mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GRB14 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • NSUN6 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SAMD9L mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'RPPA_CNMF'.

  • PPP2R5E mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • MTTP mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • UBR2 mutation correlated to 'MRNA_CNMF'.

  • SMC2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PSD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PANK1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • ADM mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • DCAF12L2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • DIAPH2 mutation correlated to 'MRNA_CNMF'.

  • FBXO34 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • SCN4A mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SATB1 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF334 mutation correlated to 'METHLYATION_CNMF'.

  • NCAPD3 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • KLF5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • DSC2 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • C5ORF34 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • YSK4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CBLN3 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • GGA2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ING1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ADAMTS19 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • MALT1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • JMJD6 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • THUMPD3 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CNMF'.

  • STAU2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIAA1797 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MKI67 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • DNAH6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PER3 mutation correlated to 'CN_CNMF'.

  • ZNF443 mutation correlated to 'CN_CNMF'.

  • TRIM46 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • DPCR1 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DCLRE1A mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • C7ORF50 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • MAGI1 mutation correlated to 'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PARG mutation correlated to 'CN_CNMF'.

  • VPS52 mutation correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.

  • OR4C15 mutation correlated to 'CN_CNMF'.

  • MANBA mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PIK3C2G mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RTN4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C7ORF58 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FAM20B mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • CEP164 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SF1 mutation correlated to 'MRNA_CHIERARCHICAL',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • KIF16B mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • COL6A5 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CYP2C18 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ITGA5 mutation correlated to 'CN_CNMF'.

  • KRTAP5-3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RAPGEF6 mutation correlated to 'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ERCC3 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • GABPA mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • NXF3 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • LRIG2 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • BRSK1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • E2F5 mutation correlated to 'METHLYATION_CNMF'.

  • SEC31A mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • NUFIP1 mutation correlated to 'CN_CNMF'.

  • OR5H15 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • TPR mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • BAZ2B mutation correlated to 'CN_CNMF'.

  • USP44 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • EIF4G2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'RPPA_CNMF'.

  • EYS mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • ST8SIA6 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • C6ORF222 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF555 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CASP1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • IFNA2 mutation correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.

  • IL1RL1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • UGT1A1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PTPRR mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • STK11 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • AGFG2 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MFSD9 mutation correlated to 'CN_CNMF'.

  • MCART1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • MRPS5 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • STK35 mutation correlated to 'CN_CNMF'.

  • CCDC110 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • RC3H2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ANKRD23 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FBXL19 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • BFSP1 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C18ORF19 mutation correlated to 'MRNA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RNF20 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CNMF'.

  • TRIM24 mutation correlated to 'MIRSEQ_CNMF'.

  • CDKL2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • LRP2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PAK7 mutation correlated to 'MRNA_CNMF'.

  • CHD7 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NSUN2 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CNMF'.

  • CCNH mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CNMF'.

  • IVD mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PSMA2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TUT1 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • AFF1 mutation correlated to 'RPPA_CNMF'.

  • CTCF mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • STYK1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • BCAP29 mutation correlated to 'MIRSEQ_CNMF'.

  • SPAST mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ARID5A mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CSNK2A2 mutation correlated to 'MIRSEQ_CNMF'.

  • ACTN1 mutation correlated to 'METHLYATION_CNMF'.

  • FAM193A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TAF6 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • CYP4F11 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • MED13 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • DACT1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PTTG1IP mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • ATP12A mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • DHX32 mutation correlated to 'MRNASEQ_CNMF'.

  • SLITRK2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • TMC8 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • EMR3 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • VPS33A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • BRE mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • NKTR mutation correlated to 'CN_CNMF'.

  • ICA1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZFYVE16 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RDBP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TRPV2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ABLIM3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • LEPRE1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KIAA0240 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HLA-B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • NEK1 mutation correlated to 'CN_CNMF'.

  • RNASEL mutation correlated to 'RPPA_CNMF'.

  • ALCAM mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • SLC30A8 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • DNMT1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • UCHL5 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • HERC1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PROM1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • LRMP mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NHLRC2 mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.

  • JAK1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PAK4 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SNX2 mutation correlated to 'METHLYATION_CNMF'.

  • LIMCH1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.

  • KIAA0564 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CEACAM6 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • AKAP11 mutation correlated to 'MRNA_CNMF'.

  • OSMR mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HDAC5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NCR3 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • OR51T1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SNAPC2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ABHD2 mutation correlated to 'MRNA_CHIERARCHICAL'.

  • IRS4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GABRA6 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • HECTD2 mutation correlated to 'CN_CNMF'.

  • ARHGAP11A mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • TSHZ1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • URGCP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • FRMD6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CPS1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'RPPA_CNMF'.

  • TUBB4 mutation correlated to 'CN_CNMF'.

  • USF1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • PPP1R12A mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • APOBEC4 mutation correlated to 'CN_CNMF'.

  • GPR98 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TMEM41B mutation correlated to 'RPPA_CHIERARCHICAL'.

  • RGS3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • FAM119A mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • TRIM45 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MAGEA4 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • MANF mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • TBC1D10C mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DPF3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KIRREL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • METTL5 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CCR8 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • NTRK2 mutation correlated to 'MIRSEQ_CNMF'.

  • SMARCB1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ERCC6 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HEPH mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • RASGRF2 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • DST mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • FBXO38 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ATP11C mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'RPPA_CNMF'.

  • DNAJC11 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CLDN10 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • IGSF5 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'METHLYATION_CNMF'.

  • PCSK5 mutation correlated to 'RPPA_CNMF'.

  • DDHD2 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RARRES3 mutation correlated to 'CN_CNMF'.

  • TRAF3IP1 mutation correlated to 'METHLYATION_CNMF'.

  • C14ORF50 mutation correlated to 'CN_CNMF'.

  • ALAS1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • FAM151A mutation correlated to 'CN_CNMF'.

  • ADH7 mutation correlated to 'CN_CNMF'.

  • ARHGAP28 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SLC38A5 mutation correlated to 'MRNASEQ_CNMF'.

  • HIST1H1A mutation correlated to 'CN_CNMF'.

  • OSR1 mutation correlated to 'MRNASEQ_CNMF'.

  • MAP2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • UPF2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CACNA1D mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • OR9Q1 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SSRP1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ST6GALNAC3 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • TCF7L2 mutation correlated to 'CN_CNMF'.

  • PACS2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • STAT5B mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF622 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZKSCAN1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • THRAP3 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • DNAH8 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CNOT10 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • RSPO2 mutation correlated to 'METHLYATION_CNMF'.

  • FAM175A mutation correlated to 'CN_CNMF'.

  • SLC8A3 mutation correlated to 'CN_CNMF'.

  • ARHGEF1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF559 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • EPHA7 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KCTD9 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PTPRB mutation correlated to 'CN_CNMF'.

  • GPR113 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PCDH20 mutation correlated to 'CN_CNMF'.

  • ADH1B mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • POPDC3 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • SNRNP200 mutation correlated to 'MIRSEQ_CNMF'.

  • BEND2 mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.

  • MAP3K13 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ADAMTS16 mutation correlated to 'CN_CNMF'.

  • MAP3K10 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • RUNX2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SMARCA1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CD79A mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • TBX4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • EPSTI1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • TSPAN7 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • MED14 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DOCK7 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • DBF4 mutation correlated to 'CN_CNMF'.

  • GOLIM4 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • IRGQ mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • IL6R mutation correlated to 'CN_CNMF'.

  • C20ORF151 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CTCFL mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SLC16A1 mutation correlated to 'CN_CNMF'.

  • MAP2K4 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • DUSP9 mutation correlated to 'MIRSEQ_CNMF'.

  • BRD2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • NTNG1 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • LGALS9C mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CHMP4C mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF630 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • PTPDC1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • DMXL2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KLF11 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • TAX1BP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MCM9 mutation correlated to 'METHLYATION_CNMF'.

  • SYNJ1 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • SLC9A2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PAK1 mutation correlated to 'CN_CNMF'.

  • OR4N4 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • IPPK mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CNMF'.

  • SPATA16 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ACAN mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C16ORF88 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • ABCG2 mutation correlated to 'RPPA_CNMF'.

  • EPC1 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • PTPN3 mutation correlated to 'MIRSEQ_CNMF'.

  • LEMD1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ABCD4 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • HCLS1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • SULT1C4 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • TRAF2 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF564 mutation correlated to 'CN_CNMF'.

  • JMJD1C mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CNMF'.

  • CCDC111 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • PAK2 mutation correlated to 'MIRSEQ_CNMF'.

  • HECW2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • BTNL3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ATF2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • B4GALT6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • LRRC6 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MRPS22 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • HEATR4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • KRTAP12-3 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • FLNB mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PALLD mutation correlated to 'RPPA_CNMF'.

  • GATA1 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TRIP12 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZFP91 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • C1ORF85 mutation correlated to 'MRNASEQ_CNMF'.

  • UGT2A1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FSHR mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • VEPH1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SBSN mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RUSC2 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CLVS1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FOXA2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • MAOB mutation correlated to 'CN_CNMF'.

  • CCDC6 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • WNK4 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SCYL2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RBM15B mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DHX36 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TAB3 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • NXPH1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'METHLYATION_CNMF'.

  • KCNN4 mutation correlated to 'MIRSEQ_CNMF'.

  • SLC9A9 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ATP6V0A4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • GRIN2B mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FSCB mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DLGAP3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • HSPBAP1 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • COLEC12 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • KIFC2 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • PPYR1 mutation correlated to 'RPPA_CNMF'.

  • CASP10 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • STAU1 mutation correlated to 'MIRSEQ_CNMF'.

  • EFNB3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • ICAM5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZP2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RXRA mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DOCK8 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF512 mutation correlated to 'MIRSEQ_CNMF'.

  • EPHA2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • OR6K2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CTR9 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • STK40 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • BLM mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GPR161 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • BTBD3 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • KLKB1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SENP8 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • DPP8 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SLC22A10 mutation correlated to 'CN_CNMF'.

  • FANCD2 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CDS2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CCDC66 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TTC13 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GLT8D1 mutation correlated to 'CN_CNMF'.

  • UBC mutation correlated to 'RPPA_CHIERARCHICAL'.

  • ZNF594 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CNMF'.

  • BTF3L4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZCWPW2 mutation correlated to 'CN_CNMF'.

  • ZNF711 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PRSS48 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • MMP7 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • FAM120C mutation correlated to 'RPPA_CHIERARCHICAL'.

  • UHRF1BP1L mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PLEKHH2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • VPRBP mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FMO5 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CHRM3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SYT2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ZNF462 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SIX5 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • C9ORF125 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • AMBRA1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SETX mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PEBP4 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • LEPROTL1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MAP7 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MCF2L2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CNMF'.

  • ANKRD26 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NLRP13 mutation correlated to 'CN_CNMF'.

  • LRRN1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ST18 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • MAGOHB mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • G2E3 mutation correlated to 'CN_CNMF'.

  • LAMA3 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GNG12 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • GUCY1A3 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • CALB2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • LRRN3 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • LIX1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • C3ORF63 mutation correlated to 'MRNA_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • FAM199X mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • SKIV2L mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TAPBP mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CDHR3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TJP1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • HIST1H4L mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • AFF3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TRAF3IP3 mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.

  • CDH24 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF197 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ESCO1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • NT5C3L mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KIAA1919 mutation correlated to 'CN_CNMF'.

  • EPB41L4B mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SRL mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • SKIV2L2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KBTBD4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • OLFML1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • C7ORF60 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • IDE mutation correlated to 'RPPA_CHIERARCHICAL'.

  • C1ORF124 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PIGK mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • TRIB1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • MYST3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • APLP1 mutation correlated to 'MRNA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SPARCL1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • UGT1A9 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • MBP mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • AAMP mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • BEX5 mutation correlated to 'MRNASEQ_CNMF'.

  • HYDIN mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • AGBL5 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PLCB2 mutation correlated to 'MRNA_CHIERARCHICAL'.

  • SAFB mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • DNAJB11 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SLC46A3 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • C9ORF102 mutation correlated to 'CN_CNMF'.

  • MTIF2 mutation correlated to 'MRNASEQ_CNMF'.

  • MEGF8 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ARID2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • PCDHGA4 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NRAP mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DDX11 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KIF5B mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF418 mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CNMF'.

  • ZNF124 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KLC3 mutation correlated to 'RPPA_CNMF'.

  • KIAA0528 mutation correlated to 'CN_CNMF'.

  • RNF219 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MED12L mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'CN_CNMF'.

  • PIWIL1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF546 mutation correlated to 'CN_CNMF'.

  • ANK3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KRT25 mutation correlated to 'MRNA_CHIERARCHICAL',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ACTA1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ZNF577 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SRGAP3 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ZMYND8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • KIAA0319 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • PUS7 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • DCLRE1C mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TEX2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • BRD4 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZMIZ1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SLC44A4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MFRP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PKHD1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • USP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TRHDE mutation correlated to 'CN_CNMF'.

  • STK3 mutation correlated to 'CN_CNMF'.

  • SEC14L1 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TOX mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ROCK1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CCDC158 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • XPO4 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • ULK2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ATR mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CTNND1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NEDD9 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PRKCQ mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • CAMK1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • ATAD1 mutation correlated to 'CN_CNMF'.

  • C6ORF150 mutation correlated to 'MRNASEQ_CNMF'.

  • IGFN1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CCDC14 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'METHLYATION_CNMF'.

  • ENPP3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TAB1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CDK5RAP2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • NONO mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SLC16A5 mutation correlated to 'RPPA_CNMF'.

  • GUCY2F mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • RELA mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • WDR65 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ARID4B mutation correlated to 'MIRSEQ_CNMF'.

  • FBLIM1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • WFDC10B mutation correlated to 'MRNASEQ_CNMF'.

  • NAA15 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ACTL7B mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • COL4A6 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • FGD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PHKB mutation correlated to 'CN_CNMF'.

  • CHD5 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GSTA5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • C5ORF42 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ESYT1 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • ADAM30 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PNPLA5 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • TMPRSS5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CSF3R mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • VANGL1 mutation correlated to 'MIRSEQ_CNMF'.

  • MST1R mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • OR5H1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • VWA5A mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • ABCF3 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • CUBN mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • LIPH mutation correlated to 'CN_CNMF'.

  • TEX11 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • ZHX2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • UFSP2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • BTBD11 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • BFAR mutation correlated to 'RPPA_CNMF'.

  • SBNO1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • RIMS2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF660 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SLC38A9 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • VPS72 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • LCK mutation correlated to 'CN_CNMF'.

  • AGTPBP1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • GRIN2A mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FGD1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF286A mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • BRCA1 mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • AOX1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ESR1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • LDLRAD3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • BAZ1B mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C6ORF203 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CCPG1 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • KIAA1429 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PIGN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • OR4N2 mutation correlated to 'MIRSEQ_CNMF'.

  • MUS81 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CDHR5 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF318 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • LRRTM2 mutation correlated to 'RPPA_CNMF'.

  • IGSF1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • GCC2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • ATRNL1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • BTBD7 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • COL11A1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TTLL13 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • RPS6KC1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ZNF350 mutation correlated to 'CN_CNMF'.

  • ITPRIPL1 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.

  • GON4L mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PLCG2 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • GLTSCR1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NFATC2IP mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MYLK4 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • CENPJ mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • ZNF416 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • RBM16 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MORC1 mutation correlated to 'RPPA_CNMF'.

  • HSPA4L mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GSG2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.

  • MIPEP mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CENPA mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • OTUD4 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CASC4 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • OR2F2 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MPZL1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KIF14 mutation correlated to 'CN_CNMF'.

  • TRIM33 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • XRCC6 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • GTDC1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PCDHGA8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • F2R mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • C17ORF58 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • LCT mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • IDI1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • C6ORF15 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MYO3A mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • C5 mutation correlated to 'METHLYATION_CNMF'.

  • MICAL1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PTPN13 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TMPRSS15 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C17ORF71 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • WDR17 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CNMF'.

  • FBXO40 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PDK1 mutation correlated to 'MRNASEQ_CNMF'.

  • PHLDB2 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • TATDN2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SFRP2 mutation correlated to 'MIRSEQ_CNMF'.

  • EPRS mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CELSR1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CNGA3 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • OR6C1 mutation correlated to 'MRNASEQ_CNMF'.

  • KIAA0415 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ELANE mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • UGGT1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CCDC19 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • C13ORF23 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • SMC4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • KIF13A mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • DONSON mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC26A7 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • C12ORF51 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • LARP7 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • TRIP6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ANKRD40 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SLIT3 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CCL14 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KLK11 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • UBR5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF557 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • XKR3 mutation correlated to 'RPPA_CNMF'.

  • EPHA4 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PARVB mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TAF2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.

  • KIAA0196 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • FRY mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • EIF2AK3 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MYPN mutation correlated to 'CN_CNMF'.

  • DTD1 mutation correlated to 'MRNASEQ_CNMF'.

  • GLUD2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • PTPRZ1 mutation correlated to 'CN_CNMF'.

  • TGM1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CLEC1A mutation correlated to 'CN_CNMF'.

  • CCDC64B mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • TEK mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • IL8 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ADCY9 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TNXB mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MOGAT3 mutation correlated to 'CN_CNMF'.

  • ERCC6L mutation correlated to 'CN_CNMF'.

  • SBF1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SORBS1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • GAB3 mutation correlated to 'CN_CNMF'.

  • GBA2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • RTTN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TOMM70A mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • FSTL4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • HIST4H4 mutation correlated to 'MRNASEQ_CNMF'.

  • SESTD1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CNMF'.

  • CAPZA3 mutation correlated to 'METHLYATION_CNMF'.

  • MC3R mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • BACH2 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.

  • EPHB1 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • NFS1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CLDN17 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CNMF'.

  • GABRQ mutation correlated to 'MRNA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NTSR2 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • FRAS1 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • AHNAK mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • STK10 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • TLR9 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • VWA3A mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • RAPGEF2 mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SFRS2IP mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • LUZP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.

  • PTPRN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • AVPR1A mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KCNC4 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • RPAP2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • DDX24 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CUL1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • DENND2C mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ITGA9 mutation correlated to 'CN_CNMF'.

  • COPB2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • GATAD2A mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KRT1 mutation correlated to 'CN_CNMF'.

  • TACC2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • NDC80 mutation correlated to 'RPPA_CNMF'.

  • TNNT2 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF232 mutation correlated to 'MRNASEQ_CNMF'.

  • PRSS35 mutation correlated to 'METHLYATION_CNMF'.

  • SF3B2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • OR5L2 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • APAF1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CYTSA mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'METHLYATION_CNMF'.

  • PEAR1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SIRT4 mutation correlated to 'CN_CNMF'.

  • OLFM1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CLGN mutation correlated to 'CN_CNMF'.

  • EHBP1L1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ATP2A2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TIPARP mutation correlated to 'CN_CNMF'.

  • POLA1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • SAPS3 mutation correlated to 'CN_CNMF'.

  • MLL mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TSC2 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • MAK mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FAAH2 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • SLC17A6 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • F9 mutation correlated to 'MRNA_CNMF' and 'CN_CNMF'.

  • CHGB mutation correlated to 'CN_CNMF'.

  • LYST mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PPP2R2B mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ACTBL2 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • BATF3 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • SEC23IP mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • GIMAP5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • OSBPL5 mutation correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • TTLL5 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TMEM171 mutation correlated to 'CN_CNMF'.

  • GPSM2 mutation correlated to 'CN_CNMF'.

  • ANKRD32 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HDAC11 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KMO mutation correlated to 'CN_CNMF'.

  • COL6A3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FKBP5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ASPN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SMPDL3B mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • SEMA3C mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • GABRG2 mutation correlated to 'MRNA_CNMF'.

  • MTOR mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CD84 mutation correlated to 'CN_CNMF'.

  • PRKD1 mutation correlated to 'CN_CNMF'.

  • TET1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FLG mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SCNN1G mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SLC19A2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • TBC1D25 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • HIF1A mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZNF521 mutation correlated to 'CN_CNMF'.

  • AKAP13 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CNMF'.

  • FAM133A mutation correlated to 'CN_CNMF'.

  • RAG1 mutation correlated to 'CN_CNMF'.

  • ZNF615 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ENGASE mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CCDC144A mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CCDC112 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SFTPB mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • CACNA1H mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • G3BP1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SULF2 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • KDR mutation correlated to 'MRNA_CNMF',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CPB2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • TMEM20 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KCNQ1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CAMK2G mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SAMD11 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • FAM83D mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • BCL7A mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • HOXA1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 1907 genes and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 4767 significant findings detected.

Clinical
Features 		MRNA
CNMF 		MRNA
CHIERARCHICAL 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
IGF2R 37 (10%) 330 0.0015
(0.0322) 		0.001
(0.025) 		1e-05
(0.00134) 		0.0102
(0.0947) 		0.00183
(0.0357) 		0.0448
(0.225) 		0.0131
(0.111) 		0.00011
(0.00617) 		0.0191
(0.139) 		3e-05
(0.00283) 		0.00033
(0.0123) 		0.101
(0.347)
RNF43 46 (13%) 321 0.00194
(0.0372) 		0.0343
(0.196) 		1e-05
(0.00134) 		2e-05
(0.00216) 		0.13
(0.397) 		0.341
(0.667) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		0.00029
(0.0114) 		0.0102
(0.0949)
ZBTB20 20 (5%) 347 0.00195
(0.0373) 		0.00271
(0.0445) 		6e-05
(0.00436) 		0.00129
(0.0294) 		0.00356
(0.0529) 		0.0234
(0.158) 		0.00338
(0.0513) 		4e-05
(0.00342) 		0.0006
(0.0181) 		1e-05
(0.00134) 		0.0587
(0.259) 		0.476
(0.804)
ROS1 47 (13%) 320 0.0159
(0.125) 		0.0185
(0.137) 		0.00023
(0.00978) 		0.0283
(0.177) 		0.00325
(0.0499) 		0.0288
(0.179) 		0.058
(0.257) 		6e-05
(0.00436) 		0.00021
(0.00928) 		0.0132
(0.111) 		0.0327
(0.191) 		0.949
(1.00)
MLL2 52 (14%) 315 0.013
(0.11) 		0.00525
(0.0683) 		0.00026
(0.0106) 		0.0509
(0.242) 		0.00801
(0.084) 		0.00897
(0.0889) 		0.00997
(0.0941) 		1e-05
(0.00134) 		1e-05
(0.00134) 		0.00266
(0.0441) 		0.0188
(0.139) 		0.16
(0.441)
FHOD3 27 (7%) 340 0.00068
(0.0195) 		0.00676
(0.0769) 		1e-05
(0.00134) 		0.0388
(0.207) 		0.05
(0.24) 		0.0167
(0.129) 		0.0225
(0.155) 		0.00039
(0.0137) 		0.00347
(0.0522) 		0.00027
(0.0109) 		0.00139
(0.0307) 		0.265
(0.585)
PLEKHA6 19 (5%) 348 0.0044
(0.0605) 		0.00544
(0.0696) 		1e-05
(0.00134) 		0.00797
(0.0837) 		0.083
(0.313) 		0.122
(0.384) 		0.00146
(0.0317) 		2e-05
(0.00216) 		0.00073
(0.0203) 		0.00043
(0.0146) 		0.00069
(0.0196) 		0.0219
(0.153)
MLL4 33 (9%) 334 0.0237
(0.159) 		0.0457
(0.227) 		1e-05
(0.00134) 		0.0001
(0.00587) 		0.0611
(0.265) 		0.00699
(0.0783) 		0.0001
(0.00587) 		1e-05
(0.00134) 		2e-05
(0.00216) 		1e-05
(0.00134) 		0.0137
(0.114) 		0.488
(0.814)
MDN1 53 (14%) 314 4e-05
(0.00342) 		5e-05
(0.00393) 		1e-05
(0.00134) 		0.049
(0.237) 		0.00853
(0.0868) 		0.229
(0.535) 		0.0156
(0.124) 		1e-05
(0.00134) 		8e-05
(0.00531) 		0.00252
(0.0427) 		0.002
(0.0377) 		0.0778
(0.302)
C12ORF51 31 (8%) 336 0.00347
(0.0522) 		0.00625
(0.0742) 		7e-05
(0.00484) 		0.011
(0.0994) 		0.0233
(0.158) 		0.559
(0.874) 		0.00613
(0.0738) 		1e-05
(0.00134) 		0.00083
(0.0221) 		0.00238
(0.0413) 		0.00421
(0.0587) 		0.309
(0.634)
BMPR2 35 (10%) 332 8e-05
(0.00531) 		1e-05
(0.00134) 		1e-05
(0.00134) 		0.00608
(0.0735) 		0.223
(0.527) 		0.0448
(0.225) 		0.00017
(0.00809) 		1e-05
(0.00134) 		0.00271
(0.0445) 		1e-05
(0.00134) 		0.0783
(0.303) 		0.566
(0.879)
FMN2 49 (13%) 318 0.0409
(0.213) 		1
(1.00) 		0.00025
(0.0104) 		0.0351
(0.198) 		0.00361
(0.0533) 		0.00927
(0.0905) 		1e-05
(0.00134) 		1e-05
(0.00134) 		2e-05
(0.00216) 		1e-05
(0.00134) 		0.423
(0.757) 		0.53
(0.851)
PTCH1 89 (24%) 278 0.0018
(0.0354) 		0.00547
(0.0699) 		0.0216
(0.151) 		0.417
(0.751) 		0.0307
(0.185) 		0.00093
(0.0238) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		0.592
(0.904) 		0.569
(0.883)
CHD3 24 (7%) 343 0.00199
(0.0377) 		0.00047
(0.0154) 		1e-05
(0.00134) 		0.0245
(0.162) 		0.0715
(0.289) 		0.205
(0.505) 		0.00594
(0.0727) 		1e-05
(0.00134) 		0.00016
(0.00786) 		0.00013
(0.00687) 		0.00062
(0.0184) 		0.402
(0.734)
SVIL 32 (9%) 335 0.0272
(0.172) 		0.11
(0.364) 		1e-05
(0.00134) 		0.00578
(0.0718) 		0.144
(0.421) 		0.0446
(0.225) 		0.00404
(0.057) 		1e-05
(0.00134) 		1e-05
(0.00134) 		5e-05
(0.00393) 		0.0003
(0.0117) 		0.1
(0.343)
LARP4B 29 (8%) 338 1e-05
(0.00134) 		0.00015
(0.00753) 		3e-05
(0.00283) 		0.0521
(0.245) 		0.00197
(0.0375) 		0.112
(0.367) 		0.00041
(0.0142) 		1e-05
(0.00134) 		0.00693
(0.0779) 		0.00054
(0.0168) 		0.00656
(0.0758) 		0.355
(0.683)
FAM179A 27 (7%) 340 0.00898
(0.0889) 		0.0101
(0.0947) 		8e-05
(0.00531) 		0.013
(0.11) 		0.137
(0.409) 		0.649
(0.95) 		0.0214
(0.15) 		1e-05
(0.00134) 		0.00047
(0.0154) 		0.00261
(0.0435) 		0.00763
(0.0818) 		0.108
(0.362)
USP34 42 (11%) 325 0.396
(0.728) 		0.0608
(0.265) 		0.00171
(0.0344) 		0.0462
(0.229) 		0.0245
(0.162) 		0.0333
(0.193) 		0.00014
(0.00717) 		1e-05
(0.00134) 		2e-05
(0.00216) 		1e-05
(0.00134) 		0.00873
(0.0877) 		0.205
(0.505)
BRAF 96 (26%) 271 1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		2e-05
(0.00216) 		0.0603
(0.263) 		0.0173
(0.131) 		1e-05
(0.00134) 		1e-05
(0.00134) 		3e-05
(0.00283) 		1e-05
(0.00134) 		0.392
(0.722) 		0.39
(0.72)
CSMD3 86 (23%) 281 1e-05
(0.00134) 		0.00011
(0.00617) 		0.00072
(0.0202) 		0.214
(0.515) 		0.0167
(0.129) 		0.0444
(0.224) 		0.0332
(0.192) 		1e-05
(0.00134) 		0.00243
(0.0418) 		9e-05
(0.00567) 		0.259
(0.577) 		0.585
(0.896)
CIC 23 (6%) 344 0.0553
(0.25) 		0.0379
(0.206) 		4e-05
(0.00342) 		0.0411
(0.213) 		0.00072
(0.0202) 		0.0484
(0.236) 		0.00222
(0.0399) 		1e-05
(0.00134) 		1e-05
(0.00134) 		0.00297
(0.0473) 		0.0659
(0.278) 		0.309
(0.633)
MACF1 58 (16%) 309 1e-05
(0.00134) 		2e-05
(0.00216) 		1e-05
(0.00134) 		0.00459
(0.0624) 		0.00363
(0.0536) 		0.0613
(0.266) 		0.00136
(0.0304) 		1e-05
(0.00134) 		3e-05
(0.00283) 		9e-05
(0.00567) 		0.125
(0.39) 		0.59
(0.901)
GPR98 61 (17%) 306 0.0023
(0.0405) 		0.00302
(0.0477) 		3e-05
(0.00283) 		0.0989
(0.341) 		0.00401
(0.0569) 		0.0139
(0.115) 		0.0128
(0.109) 		3e-05
(0.00283) 		0.00054
(0.0168) 		0.00235
(0.041) 		0.109
(0.363) 		0.302
(0.625)
FLNB 28 (8%) 339 0.00572
(0.0714) 		0.00155
(0.0326) 		1e-05
(0.00134) 		0.00012
(0.00654) 		0.625
(0.931) 		0.506
(0.832) 		0.00238
(0.0413) 		0.00017
(0.00809) 		0.0019
(0.0366) 		0.00197
(0.0375) 		0.00325
(0.0499) 		0.541
(0.858)
LRRN1 17 (5%) 350 0.0991
(0.342) 		0.00913
(0.0897) 		1e-05
(0.00134) 		0.00346
(0.0522) 		0.366
(0.695) 		0.699
(0.99) 		0.0102
(0.0947) 		1e-05
(0.00134) 		0.00011
(0.00617) 		2e-05
(0.00216) 		0.00223
(0.0399) 		0.0429
(0.22)
MEGF8 24 (7%) 343 0.00767
(0.0818) 		0.016
(0.126) 		1e-05
(0.00134) 		0.00013
(0.00687) 		0.0683
(0.282) 		0.367
(0.697) 		0.0001
(0.00587) 		1e-05
(0.00134) 		0.00026
(0.0106) 		2e-05
(0.00216) 		0.00072
(0.0202) 		0.403
(0.735)
BAZ1B 21 (6%) 346 0.0293
(0.18) 		0.0246
(0.163) 		0.0165
(0.128) 		0.724
(1.00) 		0.0108
(0.0981) 		0.353
(0.682) 		0.00811
(0.0844) 		0.00121
(0.0282) 		0.00864
(0.0874) 		2e-05
(0.00216) 		0.0322
(0.189) 		0.128
(0.395)
COL6A3 51 (14%) 316 0.0207
(0.147) 		0.0301
(0.183) 		1e-05
(0.00134) 		0.0288
(0.179) 		0.0712
(0.288) 		0.0041
(0.0577) 		0.0416
(0.215) 		0.0001
(0.00587) 		0.0196
(0.142) 		0.014
(0.115) 		0.0769
(0.3) 		0.205
(0.505)
PRKDC 63 (17%) 304 0.00225
(0.0402) 		0.00681
(0.0772) 		0.00032
(0.0121) 		0.505
(0.831) 		0.0292
(0.18) 		0.287
(0.608) 		0.00278
(0.0452) 		1e-05
(0.00134) 		2e-05
(0.00216) 		0.00279
(0.0453) 		0.0711
(0.288) 		0.401
(0.733)
FBXW7 103 (28%) 264 0.00967
(0.0927) 		0.0491
(0.237) 		0.00011
(0.00617) 		0.558
(0.873) 		0.00124
(0.0287) 		0.384
(0.715) 		0.0302
(0.183) 		2e-05
(0.00216) 		0.00152
(0.0323) 		0.00021
(0.00928) 		0.279
(0.603) 		0.479
(0.807)
C14ORF43 18 (5%) 349 0.0978
(0.34) 		0.0104
(0.0956) 		0.00047
(0.0154) 		0.0251
(0.165) 		0.487
(0.814) 		0.694
(0.986) 		0.0175
(0.132) 		1e-05
(0.00134) 		0.0195
(0.141) 		1e-05
(0.00134) 		0.00241
(0.0417) 		0.064
(0.272)
ATM 132 (36%) 235 0.0277
(0.174) 		0.181
(0.474) 		1e-05
(0.00134) 		0.36
(0.688) 		0.00339
(0.0514) 		0.00908
(0.0894) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		0.0716
(0.289) 		0.344
(0.67)
NCAPD2 20 (5%) 347 0.076
(0.299) 		0.859
(1.00) 		1e-05
(0.00134) 		0.0121
(0.105) 		0.00684
(0.0773) 		0.0265
(0.17) 		0.0244
(0.162) 		0.00284
(0.046) 		0.0241
(0.161) 		0.00367
(0.054) 		0.084
(0.315) 		0.313
(0.638)
UBR4 39 (11%) 328 0.0175
(0.132) 		0.0206
(0.147) 		0.0001
(0.00587) 		0.212
(0.512) 		0.0411
(0.213) 		0.0615
(0.266) 		0.0234
(0.158) 		1e-05
(0.00134) 		7e-05
(0.00484) 		0.00055
(0.017) 		0.286
(0.608) 		0.104
(0.352)
USP26 23 (6%) 344 0.00874
(0.0878) 		0.0439
(0.222) 		1e-05
(0.00134) 		0.0295
(0.181) 		0.0451
(0.226) 		0.491
(0.816) 		0.00111
(0.0266) 		0.00033
(0.0123) 		0.139
(0.412) 		0.0759
(0.299) 		0.00641
(0.0749) 		0.537
(0.857)
MYST4 23 (6%) 344 0.00747
(0.081) 		0.00063
(0.0185) 		0.00038
(0.0134) 		0.0119
(0.104) 		0.35
(0.677) 		0.193
(0.491) 		0.133
(0.404) 		1e-05
(0.00134) 		0.0158
(0.125) 		0.00471
(0.0636) 		0.0066
(0.076) 		0.491
(0.816)
PIK3CA 175 (48%) 192 0.00288
(0.0463) 		0.215
(0.516) 		0.0138
(0.114) 		0.388
(0.718) 		0.00391
(0.0559) 		0.0499
(0.24) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		0.833
(1.00) 		0.231
(0.537)
CREBBP 60 (16%) 307 1e-05
(0.00134) 		0.00063
(0.0185) 		0.00614
(0.0738) 		0.00505
(0.0666) 		0.0898
(0.325) 		0.413
(0.747) 		0.214
(0.515) 		0.00018
(0.00839) 		0.00049
(0.0158) 		0.00242
(0.0417) 		0.456
(0.788) 		0.0376
(0.206)
TNRC6C 18 (5%) 349 0.00045
(0.0149) 		0.00687
(0.0774) 		1e-05
(0.00134) 		0.00346
(0.0522) 		0.466
(0.796) 		0.482
(0.81) 		0.00716
(0.0792) 		1e-05
(0.00134) 		0.00594
(0.0727) 		0.00313
(0.0487)
KIF21A 24 (7%) 343 0.043
(0.22) 		0.0222
(0.154) 		0.00013
(0.00687) 		0.056
(0.252) 		0.0212
(0.149) 		0.123
(0.385) 		0.00909
(0.0894) 		0.00143
(0.0313) 		0.207
(0.508) 		0.00269
(0.0443) 		0.0036
(0.0533) 		0.113
(0.37)
EIF2AK4 18 (5%) 349 0.0337
(0.194) 		0.0866
(0.319) 		0.0104
(0.0957) 		0.00619
(0.0739) 		0.00024
(0.0101) 		0.096
(0.337) 		0.0379
(0.206) 		0.00171
(0.0344) 		0.0494
(0.238) 		0.00452
(0.0618)
FBN2 43 (12%) 324 9e-05
(0.00567) 		0.00108
(0.0261) 		9e-05
(0.00567) 		0.0406
(0.211) 		0.0367
(0.204) 		0.36
(0.688) 		0.135
(0.406) 		0.00124
(0.0287) 		0.00652
(0.0756) 		0.0159
(0.125) 		0.432
(0.766) 		0.198
(0.495)
VPS13B 52 (14%) 315 0.0455
(0.227) 		0.0965
(0.338) 		6e-05
(0.00436) 		0.00028
(0.0112) 		0.0063
(0.0744) 		0.289
(0.611) 		0.00025
(0.0104) 		0.00059
(0.0178) 		0.00166
(0.0339) 		0.00819
(0.0848) 		0.0736
(0.294) 		0.825
(1.00)
CAMSAP1L1 21 (6%) 346 0.00895
(0.0889) 		0.0104
(0.0957) 		0.00026
(0.0106) 		0.022
(0.153) 		0.35
(0.677) 		0.0371
(0.205) 		0.014
(0.116) 		9e-05
(0.00567) 		0.0132
(0.111) 		0.168
(0.452) 		0.218
(0.52) 		0.884
(1.00)
CEP164 23 (6%) 344 0.00845
(0.0862) 		0.00506
(0.0666) 		0.00075
(0.0207) 		0.0157
(0.124) 		0.178
(0.468) 		0.785
(1.00) 		0.0843
(0.315) 		0.00018
(0.00839) 		0.00261
(0.0435) 		0.00484
(0.0647) 		0.0322
(0.189) 		0.187
(0.483)
CACNA1D 22 (6%) 345 0.189
(0.484) 		0.796
(1.00) 		1e-05
(0.00134) 		0.00161
(0.0334) 		0.491
(0.816) 		0.0685
(0.282) 		0.00025
(0.0104) 		6e-05
(0.00436) 		0.00336
(0.0512) 		4e-05
(0.00342) 		0.00109
(0.0263) 		0.029
(0.179)
EPHA7 35 (10%) 332 0.0079
(0.0835) 		0.00703
(0.0785) 		0.00101
(0.0251) 		0.0383
(0.206) 		0.0566
(0.253) 		0.314
(0.639) 		0.00069
(0.0196) 		5e-05
(0.00393) 		0.00354
(0.0529) 		0.0237
(0.159) 		1
(1.00) 		0.331
(0.656)
HYDIN 80 (22%) 287 0.0009
(0.0232) 		0.00299
(0.0475) 		3e-05
(0.00283) 		0.00235
(0.041) 		0.575
(0.889) 		0.225
(0.529) 		0.0146
(0.119) 		1e-05
(0.00134) 		0.00466
(0.0631) 		0.00057
(0.0175) 		0.321
(0.646) 		0.288
(0.609)
ANK3 48 (13%) 319 0.00048
(0.0156) 		0.00451
(0.0618) 		1e-05
(0.00134) 		0.0346
(0.196) 		0.172
(0.458) 		0.21
(0.51) 		0.00064
(0.0187) 		1e-05
(0.00134) 		0.00294
(0.047) 		0.00032
(0.0121) 		0.093
(0.333) 		0.0782
(0.303)
ROCK1 17 (5%) 350 0.391
(0.721) 		0.0344
(0.196) 		9e-05
(0.00567) 		0.0348
(0.197) 		0.688
(0.98) 		0.641
(0.943) 		0.0203
(0.145) 		0.0101
(0.0944) 		0.00159
(0.0332) 		0.00022
(0.00957) 		0.00363
(0.0536) 		0.364
(0.693)
FRY 38 (10%) 329 0.0294
(0.181) 		0.00144
(0.0314) 		1e-05
(0.00134) 		0.00089
(0.0231) 		0.845
(1.00) 		0.96
(1.00) 		0.00304
(0.0478) 		0.00028
(0.0112) 		0.00741
(0.0806) 		0.0372
(0.205) 		0.788
(1.00) 		0.42
(0.754)
TACC2 25 (7%) 342 0.00568
(0.0713) 		0.0176
(0.132) 		1e-05
(0.00134) 		0.00864
(0.0874) 		0.149
(0.43) 		0.391
(0.721) 		0.00833
(0.0857) 		1e-05
(0.00134) 		0.00068
(0.0195) 		0.00755
(0.0814)
MLL 38 (10%) 329 0.00115
(0.0273) 		0.128
(0.394) 		0.0121
(0.105) 		0.0296
(0.181) 		0.0326
(0.19) 		0.0465
(0.23) 		0.197
(0.495) 		0.0319
(0.188) 		0.116
(0.375) 		2e-05
(0.00216) 		0.0331
(0.192) 		0.11
(0.363)
APC 295 (80%) 72 0.102
(0.349) 		0.0415
(0.215) 		0.0082
(0.0849) 		0.0252
(0.165) 		0.199
(0.497) 		0.235
(0.545) 		9e-05
(0.00567) 		5e-05
(0.00393) 		2e-05
(0.00216) 		0.00731
(0.0802) 		0.222
(0.525) 		0.818
(1.00)
TP53 232 (63%) 135 0.00069
(0.0196) 		0.00295
(0.0472) 		1e-05
(0.00134) 		0.199
(0.497) 		0.393
(0.724) 		0.0686
(0.282) 		0.00108
(0.0261) 		1e-05
(0.00134) 		0.00011
(0.00617) 		0.00132
(0.0298) 		0.11
(0.364) 		0.894
(1.00)
ARID1A 72 (20%) 295 0.00969
(0.0927) 		0.0249
(0.164) 		0.00057
(0.0175) 		0.136
(0.409) 		0.21
(0.511) 		0.497
(0.823) 		0.00764
(0.0818) 		2e-05
(0.00216) 		0.00081
(0.0217) 		0.00088
(0.0229) 		0.0707
(0.287) 		0.764
(1.00)
NTAN1 10 (3%) 357 0.286
(0.608) 		0.0393
(0.208) 		0.00045
(0.0149) 		0.0496
(0.239) 		0.465
(0.795) 		0.767
(1.00) 		0.0452
(0.226) 		2e-05
(0.00216) 		0.00198
(0.0376) 		0.0124
(0.107)
WNT1 7 (2%) 360 0.0167
(0.129) 		0.0309
(0.185) 		0.556
(0.871) 		0.629
(0.933) 		0.00783
(0.0829) 		0.00044
(0.0147) 		0.00283
(0.0459) 		0.00029
(0.0114) 		0.00629
(0.0744) 		0.358
(0.686)
NF2 62 (17%) 305 0.577
(0.891) 		0.157
(0.439) 		0.237
(0.547) 		0.302
(0.625) 		0.00599
(0.0731) 		0.00097
(0.0244) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		0.471
(0.8) 		0.023
(0.157)
SETD2 41 (11%) 326 0.00838
(0.0859) 		0.0531
(0.247) 		1e-05
(0.00134) 		0.00104
(0.0255) 		0.71
(0.999) 		0.588
(0.899) 		1e-05
(0.00134) 		0.00011
(0.00617) 		0.00247
(0.0422) 		0.00053
(0.0166) 		0.582
(0.893) 		0.579
(0.891)
DDX26B 15 (4%) 352 0.00017
(0.00809) 		0.00529
(0.0684) 		0.0151
(0.121) 		0.0525
(0.245) 		9e-05
(0.00567) 		2e-05
(0.00216) 		1e-05
(0.00134) 		0.00083
(0.0221) 		0.281
(0.605) 		0.447
(0.784)
MAP4K3 17 (5%) 350 0.187
(0.483) 		0.451
(0.786) 		0.00922
(0.0903) 		0.0489
(0.237) 		0.0258
(0.167) 		0.973
(1.00) 		0.0481
(0.235) 		0.0167
(0.129) 		0.0188
(0.139) 		0.00292
(0.0468) 		0.665
(0.963) 		0.102
(0.348)
KCTD3 17 (5%) 350 4e-05
(0.00342) 		0.0398
(0.209) 		0.144
(0.42) 		0.192
(0.49) 		0.00912
(0.0896) 		4e-05
(0.00342) 		0.00206
(0.0385) 		0.00059
(0.0178) 		0.0738
(0.294) 		0.0399
(0.209)
PLXNA3 17 (5%) 350 8e-05
(0.00531) 		0.00088
(0.0229) 		0.76
(1.00) 		0.25
(0.566) 		0.00049
(0.0158) 		0.0001
(0.00587) 		2e-05
(0.00216) 		0.0278
(0.174) 		0.648
(0.949) 		0.0244
(0.162)
XYLT2 14 (4%) 353 0.00147
(0.0318) 		0.00884
(0.0883) 		0.676
(0.974) 		0.28
(0.605) 		4e-05
(0.00342) 		0.00062
(0.0184) 		0.00022
(0.00957) 		0.00107
(0.0261) 		0.0317
(0.187) 		0.858
(1.00)
ZFYVE26 28 (8%) 339 0.00863
(0.0874) 		0.00209
(0.0387) 		0.00061
(0.0183) 		0.0301
(0.183) 		0.131
(0.4) 		0.807
(1.00) 		0.0823
(0.311) 		0.0001
(0.00587) 		0.0238
(0.16) 		0.0009
(0.0232) 		0.146
(0.425) 		0.168
(0.452)
CD58 14 (4%) 353 0.00152
(0.0323) 		0.00356
(0.0529) 		1
(1.00) 		0.547
(0.863) 		0.00019
(0.0087) 		0.0003
(0.0117) 		0.00558
(0.0706) 		0.00101
(0.0251) 		0.026
(0.168) 		0.115
(0.373)
LATS1 18 (5%) 349 0.321
(0.646) 		0.563
(0.877) 		0.00491
(0.0653) 		0.00421
(0.0587) 		0.205
(0.505) 		0.0699
(0.285) 		0.038
(0.206) 		0.00023
(0.00978) 		0.0314
(0.187) 		0.00095
(0.024) 		0.0103
(0.0955) 		0.206
(0.507)
SHROOM4 21 (6%) 346 0.0298
(0.182) 		0.0236
(0.159) 		0.00296
(0.0473) 		0.0495
(0.238) 		0.213
(0.514) 		0.392
(0.723) 		0.4
(0.731) 		0.00517
(0.0674) 		0.0041
(0.0577) 		0.0001
(0.00587) 		0.131
(0.4) 		0.939
(1.00)
MLL3 58 (16%) 309 0.0739
(0.295) 		0.00615
(0.0738) 		0.0039
(0.0558) 		0.782
(1.00) 		0.0483
(0.236) 		0.783
(1.00) 		0.0224
(0.155) 		3e-05
(0.00283) 		0.00847
(0.0864) 		0.00269
(0.0443) 		0.136
(0.408) 		0.208
(0.509)
ITPR1 37 (10%) 330 0.00231
(0.0406) 		0.00574
(0.0716) 		0.00024
(0.0101) 		0.327
(0.651) 		0.117
(0.376) 		0.472
(0.801) 		0.365
(0.695) 		3e-05
(0.00283) 		0.00903
(0.0892) 		0.0246
(0.163) 		0.00959
(0.0921) 		0.249
(0.565)
CENPF 41 (11%) 326 1e-05
(0.00134) 		2e-05
(0.00216) 		0.00101
(0.0251) 		0.556
(0.871) 		0.0378
(0.206) 		0.305
(0.628) 		0.105
(0.355) 		0.00037
(0.0131) 		0.031
(0.186) 		0.00475
(0.0639) 		0.8
(1.00) 		0.677
(0.974)
TET3 20 (5%) 347 0.215
(0.516) 		0.813
(1.00) 		0.00757
(0.0814) 		0.0115
(0.102) 		0.761
(1.00) 		0.332
(0.657) 		0.0158
(0.125) 		0.00111
(0.0266) 		0.00014
(0.00717) 		1e-05
(0.00134) 		0.00191
(0.0367) 		0.688
(0.98)
SAPS2 11 (3%) 356 0.00067
(0.0194) 		0.0093
(0.0907) 		1
(1.00) 		0.604
(0.913) 		0.00757
(0.0814) 		0.00038
(0.0134) 		0.0113
(0.101) 		8e-05
(0.00531) 		0.0247
(0.163) 		0.238
(0.549)
ANKRD50 15 (4%) 352 0.0271
(0.171) 		0.0172
(0.131) 		0.00051
(0.0163) 		0.0488
(0.237) 		0.701
(0.992) 		0.463
(0.793) 		0.139
(0.412) 		3e-05
(0.00283) 		0.00244
(0.0419) 		0.00211
(0.0388)
PPARGC1A 23 (6%) 344 0.03
(0.183) 		0.00263
(0.0437) 		0.0446
(0.225) 		0.338
(0.663) 		0.849
(1.00) 		0.455
(0.788) 		0.557
(0.872) 		0.00023
(0.00978) 		0.0489
(0.237) 		0.0141
(0.116) 		0.00971
(0.0928) 		0.682
(0.977)
SMARCA4 30 (8%) 337 0.522
(0.844) 		0.319
(0.646) 		0.00481
(0.0644) 		0.0315
(0.187) 		0.484
(0.811) 		0.745
(1.00) 		0.0688
(0.282) 		0.00628
(0.0744) 		0.00113
(0.0269) 		0.00316
(0.049) 		0.0143
(0.117) 		0.0399
(0.209)
RELN 65 (18%) 302 1e-05
(0.00134) 		0.0198
(0.143) 		0.00021
(0.00928) 		0.159
(0.44) 		0.098
(0.34) 		0.00888
(0.0884) 		0.127
(0.392) 		4e-05
(0.00342) 		0.0134
(0.113) 		0.0138
(0.114) 		0.0929
(0.333) 		0.623
(0.929)
HUWE1 42 (11%) 325 0.00169
(0.0342) 		0.0119
(0.104) 		0.00136
(0.0304) 		0.0394
(0.208) 		0.139
(0.412) 		0.911
(1.00) 		0.308
(0.632) 		0.00237
(0.0412) 		0.0224
(0.155) 		0.00046
(0.0152) 		0.904
(1.00) 		0.416
(0.75)
EPHA3 57 (16%) 310 0.00127
(0.0292) 		0.135
(0.406) 		0.00164
(0.0337) 		0.207
(0.507) 		0.00776
(0.0824) 		0.487
(0.814) 		0.0399
(0.21) 		0.00051
(0.0163) 		0.0161
(0.126) 		0.00037
(0.0131) 		0.782
(1.00) 		0.561
(0.875)
GRM8 21 (6%) 346 0.158
(0.439) 		0.198
(0.495) 		0.00266
(0.0441) 		0.00508
(0.0667) 		0.0198
(0.143) 		0.584
(0.894) 		0.00214
(0.039) 		0.00187
(0.0363) 		0.042
(0.217) 		0.00194
(0.0372) 		0.278
(0.602) 		0.0844
(0.315)
ZCCHC6 18 (5%) 349 0.78
(1.00) 		0.785
(1.00) 		0.0219
(0.153) 		0.00781
(0.0828) 		0.939
(1.00) 		0.232
(0.54) 		0.00721
(0.0796) 		0.00034
(0.0125) 		0.00617
(0.0738) 		0.00491
(0.0653) 		0.0235
(0.159) 		0.0528
(0.246)
ATP8B1 23 (6%) 344 0.0421
(0.217) 		0.563
(0.877) 		0.00442
(0.0608) 		0.0422
(0.217) 		0.00382
(0.0552) 		0.139
(0.412) 		0.0225
(0.155) 		0.58
(0.891) 		0.0449
(0.225) 		0.0174
(0.131) 		0.16
(0.441) 		0.194
(0.492)
EIF5B 16 (4%) 351 0.00035
(0.0128) 		0.00142
(0.0312) 		0.766
(1.00) 		0.991
(1.00) 		0.00227
(0.0404) 		0.00023
(0.00978) 		0.00569
(0.0713) 		0.0146
(0.118) 		0.00071
(0.0201) 		0.465
(0.795)
SPEN 31 (8%) 336 0.0178
(0.133) 		0.00714
(0.0792) 		8e-05
(0.00531) 		0.028
(0.175) 		0.191
(0.487) 		0.797
(1.00) 		0.00557
(0.0705) 		0.00598
(0.073) 		0.13
(0.397) 		0.00142
(0.0312) 		0.883
(1.00) 		0.0784
(0.304)
ARHGEF10 23 (6%) 344 0.00176
(0.0348) 		0.00018
(0.00839) 		0.00015
(0.00753) 		0.143
(0.419) 		0.0433
(0.221) 		0.393
(0.724) 		0.013
(0.11) 		0.00204
(0.0382) 		0.0268
(0.171) 		0.0577
(0.256) 		1
(1.00) 		0.173
(0.46)
USP9X 31 (8%) 336 0.0271
(0.172) 		0.00704
(0.0785) 		0.00291
(0.0467) 		0.673
(0.97) 		0.354
(0.682) 		0.0485
(0.236) 		0.15
(0.432) 		0.00024
(0.0101) 		0.0135
(0.113) 		0.178
(0.468) 		0.0242
(0.161) 		0.241
(0.553)
SFRS15 19 (5%) 348 0.0138
(0.114) 		0.157
(0.439) 		0.00081
(0.0217) 		0.00704
(0.0785) 		0.0436
(0.221) 		0.826
(1.00) 		0.0977
(0.34) 		0.0862
(0.318) 		0.257
(0.576) 		0.0396
(0.208) 		0.0255
(0.166) 		0.0262
(0.169)
OR4M2 14 (4%) 353 0.189
(0.485) 		0.453
(0.786) 		7e-05
(0.00484) 		0.0224
(0.155) 		0.0777
(0.302) 		0.691
(0.983) 		0.00553
(0.0702) 		6e-05
(0.00436) 		0.02
(0.144) 		0.0011
(0.0264) 		0.00644
(0.0751) 		0.355
(0.683)
ZC3H13 34 (9%) 333 0.00213
(0.039) 		0.00015
(0.00753) 		0.00029
(0.0114) 		0.659
(0.957) 		0.0593
(0.26) 		0.386
(0.717) 		0.0177
(0.133) 		1e-05
(0.00134) 		0.0154
(0.123) 		0.00857
(0.087) 		0.413
(0.746) 		0.983
(1.00)
SMTN 14 (4%) 353 1e-05
(0.00134) 		0.00151
(0.0322) 		0.0262
(0.169) 		0.456
(0.788) 		0.00593
(0.0727) 		1e-05
(0.00134) 		0.0167
(0.129) 		0.336
(0.662) 		0.0166
(0.128) 		0.696
(0.988)
NOS3 18 (5%) 349 0.0409
(0.213) 		0.00688
(0.0775) 		0.36
(0.689) 		0.32
(0.646) 		0.00209
(0.0387) 		0.0019
(0.0366) 		0.00011
(0.00617) 		0.0343
(0.196) 		0.0003
(0.0117) 		0.263
(0.583)
HMCN1 72 (20%) 295 0.00032
(0.0121) 		0.00024
(0.0101) 		2e-05
(0.00216) 		0.0717
(0.289) 		0.00022
(0.00957) 		0.19
(0.485) 		0.00529
(0.0684) 		3e-05
(0.00283) 		8e-05
(0.00531) 		0.115
(0.372) 		0.193
(0.49) 		0.209
(0.509)
ARAP3 21 (6%) 346 0.0296
(0.181) 		0.00247
(0.0422) 		0.00696
(0.078) 		0.157
(0.439) 		0.00099
(0.0248) 		0.155
(0.438) 		0.62
(0.926) 		0.00011
(0.00617) 		0.0264
(0.17) 		0.0939
(0.334) 		0.744
(1.00) 		0.0406
(0.211)
KTN1 18 (5%) 349 0.0305
(0.184) 		0.00269
(0.0443) 		0.00086
(0.0226) 		0.576
(0.889) 		0.0211
(0.149) 		0.854
(1.00) 		0.266
(0.586) 		4e-05
(0.00342) 		0.0161
(0.126) 		0.00043
(0.0146)
NIPBL 32 (9%) 335 0.00012
(0.00654) 		0.00737
(0.0804) 		0.00013
(0.00687) 		0.00887
(0.0884) 		0.00375
(0.0546) 		0.763
(1.00) 		0.344
(0.67) 		0.00222
(0.0399) 		0.017
(0.13) 		0.678
(0.975) 		0.0709
(0.287) 		0.78
(1.00)
EXPH5 21 (6%) 346 0.00758
(0.0814) 		0.00676
(0.0769) 		0.00905
(0.0893) 		0.0222
(0.154) 		0.0408
(0.212) 		0.0317
(0.187) 		0.427
(0.762) 		0.00029
(0.0114) 		0.3
(0.622) 		0.111
(0.365) 		0.668
(0.966) 		0.662
(0.96)
POLQ 30 (8%) 337 0.0201
(0.144) 		0.125
(0.389) 		4e-05
(0.00342) 		0.054
(0.248) 		0.0204
(0.145) 		0.417
(0.751) 		0.0128
(0.109) 		0.0125
(0.107) 		0.00033
(0.0123) 		0.0117
(0.103) 		0.0563
(0.252) 		0.744
(1.00)
NEB 57 (16%) 310 0.00035
(0.0128) 		0.00476
(0.0639) 		0.00055
(0.017) 		0.136
(0.408) 		0.0391
(0.207) 		0.564
(0.877) 		0.0178
(0.133) 		3e-05
(0.00283) 		0.0646
(0.274) 		0.0141
(0.116) 		0.202
(0.501) 		0.29
(0.611)
BRD8 15 (4%) 352 0.157
(0.439) 		0.0103
(0.0954) 		0.00052
(0.0165) 		0.00208
(0.0387) 		0.604
(0.913) 		0.765
(1.00) 		0.00272
(0.0445) 		4e-05
(0.00342) 		0.00357
(0.053) 		0.0122
(0.106) 		0.539
(0.858) 		0.72
(1.00)
RYR2 84 (23%) 283 0.022
(0.153) 		0.0266
(0.17) 		0.00042
(0.0144) 		0.0948
(0.335) 		0.00112
(0.0268) 		0.159
(0.439) 		0.048
(0.235) 		0.0009
(0.0232) 		0.319
(0.646) 		0.031
(0.186) 		0.815
(1.00) 		0.719
(1.00)
YLPM1 22 (6%) 345 0.527
(0.849) 		0.889
(1.00) 		6e-05
(0.00436) 		0.00525
(0.0683) 		0.509
(0.835) 		0.793
(1.00) 		0.00074
(0.0206) 		0.00236
(0.0411) 		0.00428
(0.0594) 		0.00476
(0.0639) 		0.00589
(0.0725) 		0.835
(1.00)
KIAA0649 10 (3%) 357 0.00222
(0.0399) 		0.00529
(0.0684) 		0.0362
(0.202) 		0.89
(1.00) 		0.0216
(0.151) 		0.0067
(0.0765) 		0.0303
(0.184) 		0.00078
(0.0212)
CHD1 23 (6%) 344 0.00837
(0.0859) 		0.00024
(0.0101) 		0.0012
(0.028) 		0.00359
(0.0532) 		0.0438
(0.222) 		0.286
(0.608) 		0.307
(0.631) 		0.0253
(0.166) 		0.571
(0.885) 		0.00832
(0.0856) 		0.745
(1.00) 		0.0609
(0.265)
SATB1 16 (4%) 351 0.488
(0.814) 		1
(1.00) 		0.0102
(0.0949) 		0.0146
(0.118) 		0.0437
(0.222) 		0.00153
(0.0324) 		0.00045
(0.0149) 		0.027
(0.171) 		0.0251
(0.165) 		0.228
(0.533)
MKI67 36 (10%) 331 1e-05
(0.00134) 		1e-05
(0.00134) 		0.00014
(0.00717) 		0.651
(0.951) 		0.0037
(0.0542) 		0.0629
(0.27) 		0.159
(0.44) 		2e-05
(0.00216) 		0.00282
(0.0457) 		0.0126
(0.108) 		0.0561
(0.252) 		0.707
(0.997)
DNAH6 20 (5%) 347 5e-05
(0.00393) 		0.00037
(0.0131) 		0.0503
(0.241) 		0.563
(0.877) 		0.00171
(0.0344) 		2e-05
(0.00216) 		0.00372
(0.0544) 		3e-05
(0.00283) 		0.0249
(0.164) 		0.264
(0.585)
RTN4 19 (5%) 348 0.0141
(0.116) 		0.00539
(0.0692) 		1e-05
(0.00134) 		0.00906
(0.0893) 		0.818
(1.00) 		0.681
(0.977) 		0.09
(0.326) 		0.00985
(0.0935) 		0.00868
(0.0877) 		0.193
(0.49) 		0.954
(1.00) 		0.0411
(0.213)
LEPRE1 9 (2%) 358 0.0443
(0.223) 		0.0343
(0.196) 		0.834
(1.00) 		0.344
(0.671) 		0.00013
(0.00687) 		7e-05
(0.00484) 		0.0001
(0.00587) 		0.0257
(0.167) 		0.0327
(0.191) 		0.561
(0.875)
DNMT1 18 (5%) 349 0.0186
(0.138) 		0.0073
(0.0802) 		0.00108
(0.0261) 		0.119
(0.38) 		0.279
(0.603) 		0.733
(1.00) 		0.00098
(0.0246) 		0.00178
(0.0351) 		0.00737
(0.0804) 		0.0112
(0.1)
KIAA0564 22 (6%) 345 0.0267
(0.171) 		0.108
(0.361) 		4e-05
(0.00342) 		0.103
(0.35) 		0.0534
(0.247) 		0.134
(0.405) 		0.0121
(0.105) 		0.00242
(0.0417) 		0.0426
(0.219) 		0.00492
(0.0654) 		0.00094
(0.0239) 		0.285
(0.608)
IRS4 27 (7%) 340 0.0171
(0.13) 		0.00592
(0.0727) 		0.00038
(0.0134) 		0.0599
(0.262) 		0.369
(0.698) 		0.132
(0.4) 		0.0213
(0.15) 		0.00026
(0.0106) 		0.00944
(0.0913) 		0.00934
(0.0909) 		0.104
(0.353) 		0.314
(0.638)
TRIM45 14 (4%) 353 0.0289
(0.179) 		0.0022
(0.0398) 		0.00165
(0.0339) 		0.0341
(0.195) 		0.79
(1.00) 		0.581
(0.891) 		0.03
(0.183) 		0.00031
(0.0119) 		0.0844
(0.315) 		0.00162
(0.0335)
ARHGAP28 13 (4%) 354 0.00793
(0.0836) 		0.017
(0.13) 		5e-05
(0.00393) 		0.0831
(0.313) 		0.192
(0.488) 		0.85
(1.00) 		0.0615
(0.266) 		3e-05
(0.00283) 		0.00153
(0.0324) 		0.00557
(0.0705) 		0.0232
(0.158) 		0.148
(0.428)
MAP3K13 18 (5%) 349 0.00582
(0.0721) 		0.00151
(0.0322) 		0.00427
(0.0593) 		0.0189
(0.139) 		0.576
(0.89) 		0.314
(0.639) 		0.0441
(0.223) 		0.00035
(0.0128) 		0.506
(0.832) 		0.00871
(0.0877) 		0.265
(0.585) 		0.625
(0.931)
TAX1BP1 12 (3%) 355 0.108
(0.362) 		1
(1.00) 		0.00572
(0.0714) 		0.0347
(0.197) 		0.103
(0.35) 		0.325
(0.649) 		0.0134
(0.113) 		0.00037
(0.0131) 		0.00064
(0.0187) 		0.00024
(0.0101) 		0.00679
(0.077) 		0.491
(0.816)
ACAN 27 (7%) 340 0.00322
(0.0497) 		0.0535
(0.247) 		6e-05
(0.00436) 		0.0129
(0.11) 		0.624
(0.93) 		0.767
(1.00) 		0.0127
(0.108) 		0.157
(0.439) 		0.0192
(0.14) 		0.0263
(0.169) 		0.906
(1.00) 		0.0474
(0.233)
DLGAP3 16 (4%) 351 0.0972
(0.339) 		0.81
(1.00) 		2e-05
(0.00216) 		0.0117
(0.103) 		0.0894
(0.325) 		0.473
(0.801) 		0.00794
(0.0836) 		0.0124
(0.107) 		0.0102
(0.0949) 		0.00149
(0.032) 		0.00618
(0.0738) 		0.356
(0.684)
EPHA2 11 (3%) 356 0.00925
(0.0904) 		0.00998
(0.0941) 		0.00145
(0.0315) 		0.137
(0.409) 		0.189
(0.485) 		0.588
(0.899) 		0.0497
(0.239) 		0.00387
(0.0556) 		0.0399
(0.21) 		0.0001
(0.00587) 		0.128
(0.394) 		0.145
(0.424)
PLEKHH2 19 (5%) 348 0.00872
(0.0877) 		0.0448
(0.225) 		1e-05
(0.00134) 		0.0143
(0.117) 		0.761
(1.00) 		0.128
(0.394) 		0.0255
(0.166) 		0.00384
(0.0554) 		0.0675
(0.28) 		0.047
(0.232) 		0.152
(0.435) 		0.883
(1.00)
C9ORF125 12 (3%) 355 0.00898
(0.0889) 		0.00935
(0.0909) 		0.00033
(0.0123) 		0.0234
(0.158) 		0.289
(0.611) 		0.501
(0.826) 		0.018
(0.134) 		0.00233
(0.0408) 		0.178
(0.468) 		0.0121
(0.105)
MAP7 11 (3%) 356 0.00154
(0.0324) 		0.0439
(0.222) 		8e-05
(0.00531) 		0.211
(0.512) 		0.266
(0.586) 		0.507
(0.833) 		0.0392
(0.207) 		0.0012
(0.028) 		0.12
(0.382) 		0.00246
(0.0421) 		0.0063
(0.0744) 		0.355
(0.683)
GNG12 8 (2%) 359 0.00583
(0.0721) 		0.0245
(0.162) 		0.264
(0.584) 		0.34
(0.667) 		0.00027
(0.0109) 		3e-05
(0.00283) 		1e-05
(0.00134) 		6e-05
(0.00436) 		0.0252
(0.165) 		0.402
(0.734)
KBTBD4 7 (2%) 360 0.013
(0.11) 		0.031
(0.186) 		1
(1.00) 		0.398
(0.73) 		0.0475
(0.234) 		0.00965
(0.0926) 		0.0179
(0.134) 		0.00953
(0.0919) 		0.0261
(0.168) 		0.607
(0.915)
SPARCL1 14 (4%) 353 0.0542
(0.248) 		0.0398
(0.209) 		1e-05
(0.00134) 		0.0221
(0.154) 		0.389
(0.72) 		0.319
(0.646) 		0.00761
(0.0817) 		0.0235
(0.159) 		0.0773
(0.301) 		0.0231
(0.157) 		0.023
(0.157) 		0.182
(0.475)
SLC44A4 12 (3%) 355 0.284
(0.608) 		1
(1.00) 		0.00068
(0.0195) 		0.0357
(0.2) 		0.12
(0.382) 		0.402
(0.734) 		0.0131
(0.111) 		0.00353
(0.0528) 		0.00744
(0.0808) 		0.00373
(0.0545) 		0.00078
(0.0212) 		0.402
(0.734)
NEDD9 12 (3%) 355 0.0299
(0.182) 		0.0666
(0.279) 		7e-05
(0.00484) 		0.0495
(0.239) 		0.191
(0.488) 		0.483
(0.811) 		0.0105
(0.0963) 		0.0122
(0.106) 		0.0354
(0.199) 		0.00986
(0.0935)
IGFN1 16 (4%) 351 0.0478
(0.234) 		0.0523
(0.245) 		0.00534
(0.0687) 		0.049
(0.237) 		0.523
(0.845) 		0.872
(1.00) 		0.00506
(0.0666) 		0.00201
(0.0378) 		0.0227
(0.156) 		0.0101
(0.0947) 		0.127
(0.393) 		0.953
(1.00)
FGD3 13 (4%) 354 0.00674
(0.0768) 		0.00149
(0.032) 		0.0327
(0.191) 		0.43
(0.765) 		0.0388
(0.207) 		0.00016
(0.00786) 		0.0034
(0.0516) 		0.00873
(0.0877) 		0.0569
(0.254) 		0.147
(0.428)
ZNF318 28 (8%) 339 0.00049
(0.0158) 		1e-05
(0.00134) 		0.00044
(0.0147) 		0.0997
(0.343) 		0.00513
(0.0672) 		0.0318
(0.187) 		0.0973
(0.34) 		0.00017
(0.00809) 		0.0585
(0.258) 		0.00173
(0.0345) 		0.437
(0.773) 		0.958
(1.00)
KIAA0415 12 (3%) 355 0.00029
(0.0114) 		0.0227
(0.155) 		0.104
(0.353) 		0.479
(0.807) 		0.00072
(0.0202) 		1e-05
(0.00134) 		0.00019
(0.0087) 		0.00081
(0.0217) 		0.00435
(0.0601) 		0.0997
(0.343)
UBR5 28 (8%) 339 0.784
(1.00) 		1
(1.00) 		0.00248
(0.0423) 		0.00954
(0.0919) 		0.858
(1.00) 		0.0392
(0.207) 		0.00661
(0.076) 		0.00081
(0.0217) 		0.00273
(0.0445) 		0.0511
(0.243) 		0.00214
(0.039) 		0.732
(1.00)
GBA2 15 (4%) 352 0.00896
(0.0889) 		0.01
(0.0943) 		0.00176
(0.0348) 		0.0171
(0.13) 		0.931
(1.00) 		0.615
(0.921) 		0.0369
(0.204) 		5e-05
(0.00393) 		0.0107
(0.0975) 		0.383
(0.715) 		0.531
(0.852) 		0.49
(0.815)
AHNAK 39 (11%) 328 0.00158
(0.033) 		0.00019
(0.0087) 		1e-05
(0.00134) 		0.0455
(0.227) 		0.213
(0.514) 		0.94
(1.00) 		0.0889
(0.323) 		1e-05
(0.00134) 		0.0343
(0.196) 		0.00108
(0.0261) 		0.141
(0.415) 		0.281
(0.606)
CACNA1H 27 (7%) 340 0.00077
(0.021) 		0.0298
(0.182) 		0.917
(1.00) 		0.263
(0.583) 		0.00196
(0.0374) 		1e-05
(0.00134) 		0.016
(0.126) 		1e-05
(0.00134) 		0.0497
(0.239) 		0.368
(0.697)
HOXA1 10 (3%) 357 0.0547
(0.249) 		0.0383
(0.206) 		0.00118
(0.0277) 		0.135
(0.407) 		0.00085
(0.0223) 		0.531
(0.853) 		0.00816
(0.0848) 		0.0123
(0.106) 		0.00982
(0.0933) 		0.0362
(0.202)
BCOR 27 (7%) 340 0.0304
(0.184) 		0.0682
(0.282) 		0.0021
(0.0388) 		0.0747
(0.296) 		0.126
(0.391) 		0.0968
(0.339) 		0.0156
(0.124) 		0.00461
(0.0626) 		0.0453
(0.226) 		0.00095
(0.024) 		0.151
(0.433) 		0.831
(1.00)
CDH1 74 (20%) 293 0.157
(0.439) 		0.197
(0.495) 		0.133
(0.403) 		0.838
(1.00) 		0.0881
(0.321) 		0.00046
(0.0152) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		0.862
(1.00) 		0.0392
(0.207)
NF1 89 (24%) 278 0.0629
(0.27) 		0.125
(0.39) 		0.233
(0.541) 		0.219
(0.521) 		0.0099
(0.0937) 		0.00208
(0.0387) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		0.998
(1.00) 		0.119
(0.38)
MVK 14 (4%) 353 2e-05
(0.00216) 		0.00806
(0.0842) 		0.206
(0.507) 		0.579
(0.891) 		0.00129
(0.0294) 		6e-05
(0.00436) 		0.00023
(0.00978) 		0.00033
(0.0123) 		0.119
(0.38) 		0.207
(0.508)
MPHOSPH10 18 (5%) 349 0.00455
(0.0621) 		0.0102
(0.0948) 		0.0352
(0.198) 		0.246
(0.561) 		0.00544
(0.0696) 		0.00418
(0.0584) 		0.00048
(0.0156) 		0.126
(0.391) 		0.111
(0.366) 		0.801
(1.00)
GPATCH8 14 (4%) 353 0.0545
(0.249) 		0.0387
(0.207) 		0.00205
(0.0384) 		0.0196
(0.142) 		0.027
(0.171) 		0.436
(0.772) 		0.00596
(0.0729) 		0.00042
(0.0144) 		0.0528
(0.246) 		0.282
(0.608) 		0.0565
(0.253) 		0.724
(1.00)
ALPK2 42 (11%) 325 0.137
(0.409) 		0.361
(0.69) 		0.00039
(0.0137) 		0.257
(0.575) 		0.0775
(0.302) 		0.0168
(0.129) 		0.00036
(0.013) 		1e-05
(0.00134) 		3e-05
(0.00283) 		6e-05
(0.00436) 		0.112
(0.366) 		0.309
(0.633)
PTEN 153 (42%) 214 0.284
(0.608) 		0.157
(0.439) 		0.208
(0.509) 		0.253
(0.569) 		0.00116
(0.0273) 		0.00022
(0.00957) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		0.425
(0.76) 		0.392
(0.722)
CTNNB1 74 (20%) 293 0.0752
(0.297) 		0.542
(0.859) 		0.562
(0.876) 		0.55
(0.867) 		0.00173
(0.0345) 		0.0219
(0.153) 		2e-05
(0.00216) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		0.264
(0.584) 		0.352
(0.68)
UBQLN2 10 (3%) 357 0.00044
(0.0147) 		0.067
(0.28) 		0.0401
(0.21) 		0.0725
(0.291) 		0.00679
(0.077) 		0.00377
(0.0547) 		0.00286
(0.0462) 		0.00797
(0.0837)
ATP6V1B1 14 (4%) 353 0.00785
(0.083) 		0.11
(0.364) 		5e-05
(0.00393) 		0.00894
(0.0888) 		1
(1.00) 		0.3
(0.622) 		0.308
(0.632) 		0.00084
(0.0221) 		0.0491
(0.238) 		0.33
(0.654) 		0.0043
(0.0595) 		0.6
(0.91)
BCL9 22 (6%) 345 0.00273
(0.0445) 		0.00139
(0.0307) 		5e-05
(0.00393) 		0.676
(0.973) 		0.0304
(0.184) 		0.645
(0.947) 		0.755
(1.00) 		0.0001
(0.00587) 		0.289
(0.61) 		0.00614
(0.0738) 		0.0867
(0.319) 		0.143
(0.418)
BCORL1 25 (7%) 342 0.158
(0.439) 		0.578
(0.891) 		0.00154
(0.0324) 		0.0469
(0.231) 		0.0394
(0.208) 		0.0367
(0.204) 		0.0666
(0.279) 		0.001
(0.025) 		0.00032
(0.0121) 		0.129
(0.396) 		0.0926
(0.332) 		0.306
(0.63)
C15ORF52 12 (3%) 355 0.0543
(0.249) 		0.0372
(0.205) 		3e-05
(0.00283) 		0.00977
(0.0931) 		0.91
(1.00) 		0.463
(0.793) 		0.0155
(0.123) 		0.00109
(0.0263) 		0.222
(0.525) 		0.00626
(0.0743) 		0.0916
(0.33) 		0.0625
(0.269)
PKD2L1 23 (6%) 344 0.591
(0.902) 		0.766
(1.00) 		0.00079
(0.0214) 		0.00028
(0.0112) 		0.504
(0.829) 		0.61
(0.918) 		0.0014
(0.0309) 		0.0153
(0.122) 		0.0192
(0.14) 		0.00512
(0.0671) 		0.117
(0.377) 		0.542
(0.859)
CASP8 17 (5%) 350 0.00011
(0.00617) 		2e-05
(0.00216) 		0.0001
(0.00587) 		0.398
(0.729) 		0.781
(1.00) 		0.246
(0.561) 		0.078
(0.303) 		5e-05
(0.00393) 		0.00805
(0.0841) 		0.0001
(0.00587)
USP24 30 (8%) 337 0.17
(0.456) 		0.0671
(0.28) 		0.018
(0.134) 		0.0226
(0.155) 		0.093
(0.333) 		0.645
(0.947) 		0.00126
(0.0291) 		0.00017
(0.00809) 		0.024
(0.16) 		0.002
(0.0377) 		0.49
(0.815) 		0.471
(0.799)
CAB39L 9 (2%) 358 0.00073
(0.0203) 		0.00533
(0.0687) 		0.171
(0.457) 		0.272
(0.594) 		0.00223
(0.0399) 		0.00304
(0.0478) 		0.00013
(0.00687) 		0.0152
(0.122) 		0.217
(0.519) 		0.49
(0.815)
HLA-A 17 (5%) 350 0.284
(0.608) 		0.453
(0.786) 		0.00017
(0.00809) 		0.00687
(0.0774) 		0.202
(0.501) 		0.135
(0.406) 		0.00015
(0.00753) 		9e-05
(0.00567) 		0.00019
(0.0087) 		0.0764
(0.299) 		0.0066
(0.076) 		0.836
(1.00)
F8 35 (10%) 332 0.00586
(0.0723) 		0.0558
(0.251) 		7e-05
(0.00484) 		0.145
(0.424) 		0.231
(0.537) 		0.82
(1.00) 		0.0428
(0.219) 		9e-05
(0.00567) 		0.134
(0.405) 		0.0149
(0.12) 		0.00143
(0.0313) 		0.104
(0.353)
SGK269 20 (5%) 347 0.00114
(0.0271) 		0.0357
(0.2) 		0.0599
(0.262) 		0.0831
(0.313) 		0.00066
(0.0192) 		6e-05
(0.00436) 		1e-05
(0.00134) 		0.00127
(0.0292) 		0.473
(0.801) 		0.698
(0.989)
B4GALNT4 11 (3%) 356 0.00076
(0.0208) 		0.0351
(0.198) 		0.102
(0.348) 		0.288
(0.609) 		0.013
(0.11) 		8e-05
(0.00531) 		0.0108
(0.0978) 		5e-05
(0.00393) 		0.152
(0.434) 		0.885
(1.00)
MIER3 13 (4%) 354 0.00187
(0.0363) 		0.00692
(0.0779) 		3e-05
(0.00283) 		0.513
(0.837) 		0.27
(0.592) 		0.434
(0.769) 		0.0512
(0.243) 		0.00249
(0.0424) 		0.00771
(0.082) 		0.00212
(0.0388)
TNFAIP3 34 (9%) 333 0.577
(0.891) 		0.155
(0.438) 		0.00361
(0.0533) 		0.00569
(0.0713) 		0.0423
(0.218) 		0.225
(0.529) 		9e-05
(0.00567) 		2e-05
(0.00216) 		0.0002
(0.00899) 		0.213
(0.514) 		0.151
(0.433) 		0.054
(0.248)
HEPACAM2 13 (4%) 354 0.0536
(0.247) 		0.0382
(0.206) 		0.0058
(0.0719) 		0.00954
(0.0919) 		0.0328
(0.191) 		0.414
(0.748) 		0.0717
(0.289) 		0.00034
(0.0125) 		0.00553
(0.0702) 		0.402
(0.734) 		0.475
(0.803) 		0.651
(0.951)
EZH2 44 (12%) 323 0.0748
(0.296) 		0.0664
(0.278) 		0.00412
(0.0579) 		0.903
(1.00) 		0.0282
(0.176) 		0.0548
(0.249) 		0.00749
(0.081) 		1e-05
(0.00134) 		1e-05
(0.00134) 		0.00052
(0.0165) 		0.451
(0.786) 		0.533
(0.855)
MSH6 39 (11%) 328 0.00553
(0.0702) 		0.00197
(0.0375) 		0.0218
(0.152) 		0.17
(0.456) 		0.0107
(0.0973) 		0.0992
(0.342) 		0.13
(0.397) 		0.00014
(0.00717) 		0.00034
(0.0125) 		0.272
(0.595) 		0.734
(1.00) 		0.969
(1.00)
C9ORF131 13 (4%) 354 0.158
(0.439) 		0.813
(1.00) 		0.0001
(0.00587) 		0.0346
(0.196) 		0.153
(0.437) 		0.446
(0.782) 		0.0319
(0.188) 		0.00311
(0.0485) 		0.0479
(0.235) 		0.00575
(0.0716)
USP7 24 (7%) 343 0.0748
(0.296) 		0.319
(0.646) 		0.00044
(0.0147) 		0.259
(0.577) 		0.0619
(0.267) 		0.11
(0.363) 		0.0227
(0.156) 		0.0098
(0.0932) 		0.0106
(0.0971) 		0.00076
(0.0208) 		0.00618
(0.0738) 		0.354
(0.682)
ZNF449 10 (3%) 357 0.00104
(0.0255) 		0.00943
(0.0913) 		0.468
(0.797) 		0.388
(0.718) 		0.0402
(0.21) 		0.00233
(0.0408) 		0.00047
(0.0154) 		0.0186
(0.138)
ODZ1 61 (17%) 306 0.00356
(0.0529) 		0.221
(0.524) 		0.0001
(0.00587) 		0.0546
(0.249) 		0.241
(0.553) 		0.29
(0.612) 		0.0303
(0.184) 		0.00351
(0.0527) 		0.0338
(0.194) 		0.0229
(0.156) 		0.71
(0.999) 		0.966
(1.00)
CHML 20 (5%) 347 0.00889
(0.0884) 		0.01
(0.0943) 		0.234
(0.543) 		0.00459
(0.0624) 		0.61
(0.918) 		0.0745
(0.296) 		0.0348
(0.197) 		0.00984
(0.0934) 		0.259
(0.577) 		0.369
(0.698) 		0.138
(0.411) 		0.00463
(0.0628)
JAK2 40 (11%) 327 0.0267
(0.171) 		0.109
(0.363) 		0.913
(1.00) 		0.658
(0.956) 		0.0876
(0.32) 		0.0433
(0.221) 		0.0277
(0.174) 		0.0016
(0.0332) 		0.0013
(0.0296) 		0.00288
(0.0463) 		0.4
(0.732) 		0.985
(1.00)
EGFR 75 (20%) 292 0.0949
(0.336) 		0.00097
(0.0244) 		0.93
(1.00) 		0.346
(0.672) 		0.00591
(0.0726) 		0.484
(0.812) 		0.00046
(0.0152) 		1e-05
(0.00134) 		0.00014
(0.00717) 		3e-05
(0.00283) 		0.727
(1.00) 		0.817
(1.00)
EP300 36 (10%) 331 0.00849
(0.0865) 		0.004
(0.0568) 		7e-05
(0.00484) 		0.0924
(0.332) 		0.2
(0.498) 		0.555
(0.871) 		0.0206
(0.147) 		0.00032
(0.0121) 		4e-05
(0.00342) 		0.0517
(0.244) 		0.0945
(0.335) 		0.197
(0.495)
MAP7D1 15 (4%) 352 0.00534
(0.0687) 		0.00625
(0.0742) 		0.131
(0.4) 		0.0869
(0.32) 		0.00063
(0.0185) 		3e-05
(0.00283) 		3e-05
(0.00283) 		0.00017
(0.00809) 		0.735
(1.00) 		0.809
(1.00)
PTPRK 33 (9%) 334 0.00323
(0.0497) 		3e-05
(0.00283) 		4e-05
(0.00342) 		0.229
(0.535) 		0.0602
(0.263) 		0.473
(0.801) 		0.13
(0.397) 		2e-05
(0.00216) 		0.0365
(0.203) 		0.00084
(0.0221) 		0.0822
(0.311) 		0.321
(0.646)
HIF3A 15 (4%) 352 0.076
(0.299) 		0.0666
(0.279) 		0.00174
(0.0346) 		0.0539
(0.248) 		0.314
(0.638) 		0.219
(0.522) 		0.0326
(0.19) 		6e-05
(0.00436) 		0.0344
(0.196) 		0.0078
(0.0827) 		0.0226
(0.155) 		0.363
(0.693)
KIAA0195 17 (5%) 350 0.68
(0.976) 		0.798
(1.00) 		0.00173
(0.0345) 		0.0604
(0.264) 		0.0404
(0.211) 		0.167
(0.451) 		0.0282
(0.176) 		4e-05
(0.00342) 		0.00618
(0.0738) 		0.00071
(0.0201) 		0.883
(1.00) 		0.354
(0.682)
PTPRC 25 (7%) 342 0.0196
(0.142) 		0.0436
(0.221) 		0.00075
(0.0207) 		0.0712
(0.288) 		0.044
(0.223) 		0.614
(0.92) 		0.0474
(0.233) 		0.0201
(0.144) 		0.121
(0.382) 		0.183
(0.478) 		0.346
(0.672) 		0.519
(0.84)
RGS22 24 (7%) 343 0.0015
(0.0322) 		0.0104
(0.0956) 		0.207
(0.508) 		0.619
(0.925) 		0.00053
(0.0166) 		4e-05
(0.00342) 		0.0123
(0.107) 		0.0127
(0.108) 		0.0556
(0.251) 		0.1
(0.345)
ALX4 11 (3%) 356 0.0103
(0.095) 		0.0744
(0.296) 		0.291
(0.612) 		0.208
(0.508) 		0.00388
(0.0556) 		6e-05
(0.00436) 		0.00016
(0.00786) 		0.00228
(0.0404) 		0.00683
(0.0772) 		0.352
(0.68)
ULK1 10 (3%) 357 0.122
(0.384) 		0.0168
(0.129) 		0.191
(0.488) 		0.0413
(0.214) 		0.00031
(0.0119) 		0.0016
(0.0332) 		0.00156
(0.0328) 		0.00983
(0.0934)
ANKRD17 26 (7%) 341 0.0563
(0.252) 		0.0147
(0.119) 		4e-05
(0.00342) 		0.0575
(0.256) 		0.482
(0.81) 		0.748
(1.00) 		0.00388
(0.0556) 		0.00329
(0.0504) 		0.0127
(0.108) 		0.0002
(0.00899) 		0.14
(0.414) 		0.629
(0.933)
STK36 14 (4%) 353 0.00223
(0.0399) 		0.0075
(0.081) 		0.0374
(0.205) 		0.401
(0.733) 		0.00154
(0.0324) 		0.00679
(0.077) 		0.00369
(0.0542) 		0.16
(0.441) 		0.138
(0.41) 		0.65
(0.95)
CDH10 39 (11%) 328 0.00345
(0.0521) 		0.00136
(0.0304) 		0.0005
(0.016) 		0.38
(0.711) 		0.118
(0.378) 		0.3
(0.622) 		0.229
(0.534) 		0.00069
(0.0196) 		0.00606
(0.0733) 		0.0313
(0.187) 		0.321
(0.646) 		0.662
(0.96)
CWF19L2 15 (4%) 352 0.0304
(0.184) 		0.32
(0.646) 		0.0018
(0.0354) 		0.175
(0.463) 		0.0469
(0.231) 		0.209
(0.51) 		0.534
(0.855) 		0.00843
(0.0861) 		0.221
(0.524) 		0.00081
(0.0217) 		0.00647
(0.0753) 		0.836
(1.00)
MYH3 33 (9%) 334 0.00792
(0.0836) 		0.00684
(0.0773) 		0.0108
(0.0982) 		0.129
(0.396) 		0.00349
(0.0524) 		0.0712
(0.288) 		0.128
(0.393) 		0.0001
(0.00587) 		0.0189
(0.139) 		0.348
(0.674) 		0.293
(0.615) 		0.852
(1.00)
ADAMTS4 14 (4%) 353 0.00946
(0.0915) 		0.00938
(0.091) 		0.0906
(0.327) 		0.0656
(0.277) 		0.0001
(0.00587) 		9e-05
(0.00567) 		0.00028
(0.0112) 		0.00018
(0.00839) 		0.15
(0.433) 		0.49
(0.815)
WWC3 22 (6%) 345 0.027
(0.171) 		0.00665
(0.0763) 		0.00018
(0.00839) 		0.187
(0.483) 		0.0636
(0.271) 		0.399
(0.731) 		0.0848
(0.316) 		0.0016
(0.0332) 		0.0251
(0.165) 		0.0001
(0.00587) 		0.283
(0.608) 		0.365
(0.695)
MARVELD2 10 (3%) 357 0.00049
(0.0158) 		0.0115
(0.102) 		0.17
(0.456) 		0.359
(0.687) 		0.00715
(0.0792) 		0.00043
(0.0146) 		0.00194
(0.0372) 		0.00385
(0.0554)
DNAH17 30 (8%) 337 0.00355
(0.0529) 		0.0878
(0.321) 		0.0623
(0.268) 		0.0179
(0.134) 		0.00351
(0.0527) 		0.00079
(0.0214) 		0.00103
(0.0254) 		0.0569
(0.254) 		0.209
(0.51) 		0.0152
(0.122)
SYNE1 118 (32%) 249 5e-05
(0.00393) 		6e-05
(0.00436) 		1e-05
(0.00134) 		0.134
(0.405) 		0.671
(0.968) 		0.158
(0.439) 		0.0536
(0.247) 		1e-05
(0.00134) 		0.00063
(0.0185) 		0.00017
(0.00809) 		0.451
(0.786) 		0.116
(0.375)
VASH1 5 (1%) 362 0.0329
(0.191) 		0.0123
(0.107) 		0.542
(0.858) 		0.148
(0.429) 		0.00042
(0.0144) 		0.00119
(0.0279) 		0.00166
(0.0339) 		0.00272
(0.0445)
ASPM 42 (11%) 325 0.00564
(0.071) 		0.00796
(0.0837) 		1e-05
(0.00134) 		0.425
(0.76) 		0.0126
(0.108) 		0.152
(0.434) 		0.421
(0.754) 		0.00206
(0.0385) 		0.17
(0.456) 		0.0549
(0.249) 		0.0332
(0.192) 		0.189
(0.485)
CEL 9 (2%) 358 0.0062
(0.0739) 		0.0684
(0.282) 		0.595
(0.906) 		0.476
(0.804) 		0.00705
(0.0785) 		0.00023
(0.00978) 		0.0001
(0.00587) 		6e-05
(0.00436) 		0.00344
(0.052) 		0.54
(0.858)
CTNNA3 26 (7%) 341 0.0319
(0.188) 		0.157
(0.439) 		0.00012
(0.00654) 		0.131
(0.4) 		0.739
(1.00) 		0.0251
(0.165) 		0.0334
(0.193) 		0.0026
(0.0434) 		0.0688
(0.282) 		0.0573
(0.255) 		0.0463
(0.229) 		0.627
(0.932)
BAIAP2L1 12 (3%) 355 0.00026
(0.0106) 		0.0343
(0.196) 		0.596
(0.907) 		0.792
(1.00) 		0.025
(0.165) 		8e-05
(0.00531) 		0.0127
(0.108) 		0.006
(0.0732) 		1
(1.00) 		0.404
(0.735)
CPZ 15 (4%) 352 0.285
(0.608) 		1
(1.00) 		0.00058
(0.0176) 		0.0109
(0.0987) 		0.0177
(0.133) 		0.0163
(0.127) 		0.00144
(0.0314) 		0.0119
(0.104) 		0.0829
(0.312) 		0.249
(0.565) 		0.219
(0.521) 		0.837
(1.00)
MTTP 23 (6%) 344 0.00764
(0.0818) 		0.00693
(0.0779) 		0.00116
(0.0273) 		0.368
(0.697) 		0.0197
(0.142) 		0.349
(0.676) 		0.253
(0.569) 		0.00381
(0.0552) 		0.314
(0.638) 		0.00616
(0.0738) 		0.468
(0.796) 		0.762
(1.00)
TRIM46 15 (4%) 352 0.00172
(0.0345) 		0.011
(0.0992) 		0.358
(0.686) 		0.593
(0.904) 		0.0122
(0.106) 		0.00562
(0.0707) 		0.0143
(0.117) 		0.149
(0.431) 		0.0254
(0.166) 		0.61
(0.918)
KIF16B 26 (7%) 341 0.00243
(0.0418) 		7e-05
(0.00484) 		5e-05
(0.00393) 		0.949
(1.00) 		0.64
(0.942) 		0.557
(0.872) 		0.769
(1.00) 		1e-05
(0.00134) 		0.00757
(0.0814) 		0.0638
(0.272) 		0.0328
(0.191) 		0.86
(1.00)
LRP2 77 (21%) 290 0.00013
(0.00687) 		0.00027
(0.0109) 		0.00033
(0.0123) 		0.082
(0.311) 		0.0232
(0.158) 		0.628
(0.932) 		0.643
(0.945) 		0.00036
(0.013) 		0.0562
(0.252) 		0.0287
(0.178) 		0.444
(0.781) 		0.987
(1.00)
CHD7 37 (10%) 330 0.0116
(0.102) 		0.205
(0.505) 		0.0007
(0.0198) 		0.0612
(0.266) 		0.286
(0.608) 		0.577
(0.891) 		0.0915
(0.33) 		0.00993
(0.0939) 		0.0322
(0.189) 		0.00048
(0.0156) 		0.0319
(0.188) 		0.513
(0.837)
SPAST 9 (2%) 358 0.0988
(0.341) 		0.00955
(0.0919) 		0.0186
(0.137) 		0.0238
(0.16) 		0.28
(0.605) 		0.368
(0.697) 		0.74
(1.00) 		0.00468
(0.0633) 		0.154
(0.437) 		0.0127
(0.109) 		0.0213
(0.15) 		0.544
(0.86)
FAM193A 17 (5%) 350 0.001
(0.025) 		0.00739
(0.0805) 		0.155
(0.439) 		0.557
(0.872) 		0.00021
(0.00928) 		1e-05
(0.00134) 		5e-05
(0.00393) 		0.00018
(0.00839) 		0.476
(0.804) 		0.607
(0.915)
VPS33A 8 (2%) 359 0.00855
(0.0869) 		0.0103
(0.0953) 		0.00203
(0.0381) 		0.0358
(0.201) 		0.557
(0.872) 		0.954
(1.00) 		0.206
(0.507) 		0.00014
(0.00717) 		0.34
(0.666) 		0.0329
(0.191)
RDBP 6 (2%) 361 0.0112
(0.101) 		0.0306
(0.184) 		0.685
(0.979) 		0.232
(0.538) 		0.0295
(0.181) 		0.00211
(0.0388) 		0.012
(0.105) 		0.00454
(0.062)
TRPV2 11 (3%) 356 0.00183
(0.0357) 		0.00272
(0.0445) 		0.00052
(0.0165) 		0.163
(0.445) 		0.0387
(0.207) 		0.298
(0.62) 		0.0838
(0.314) 		0.0039
(0.0558) 		0.00698
(0.0782) 		0.0829
(0.313) 		0.151
(0.433) 		0.493
(0.817)
JAK1 18 (5%) 349 2e-05
(0.00216) 		0.00141
(0.0311) 		0.0263
(0.169) 		0.299
(0.621) 		0.00056
(0.0173) 		1e-05
(0.00134) 		0.00057
(0.0175) 		0.0695
(0.284) 		0.574
(0.888) 		0.912
(1.00)
NCR3 5 (1%) 362 0.0617
(0.267) 		0.0371
(0.205) 		0.0868
(0.32) 		0.0307
(0.185) 		0.0135
(0.113) 		0.00662
(0.0761) 		0.0468
(0.231) 		0.00127
(0.0292)
FRMD6 10 (3%) 357 0.0268
(0.171) 		0.0478
(0.234) 		0.285
(0.608) 		0.121
(0.383) 		0.0145
(0.118) 		0.0349
(0.197) 		0.00436
(0.0602) 		0.0274
(0.173)
KIRREL2 12 (3%) 355 0.266
(0.586) 		0.812
(1.00) 		3e-05
(0.00283) 		0.0236
(0.159) 		0.543
(0.859) 		0.885
(1.00) 		0.0184
(0.137) 		0.00113
(0.0269) 		0.00452
(0.0618) 		0.00032
(0.0121)
DST 66 (18%) 301 0.0129
(0.11) 		0.0448
(0.225) 		3e-05
(0.00283) 		0.204
(0.504) 		0.189
(0.485) 		0.245
(0.56) 		0.00198
(0.0376) 		2e-05
(0.00216) 		0.0396
(0.208) 		0.169
(0.454) 		0.213
(0.514) 		0.139
(0.412)
TBX4 11 (3%) 356 0.0518
(0.244) 		0.197
(0.495) 		0.00075
(0.0207) 		0.0488
(0.237) 		0.51
(0.836) 		0.654
(0.953) 		0.0494
(0.238) 		0.0003
(0.0117) 		0.0605
(0.264) 		0.019
(0.139) 		0.0064
(0.0749) 		0.489
(0.815)
MED14 19 (5%) 348 0.00379
(0.055) 		0.00532
(0.0686) 		0.00126
(0.0291) 		0.808
(1.00) 		0.0228
(0.156) 		0.243
(0.556) 		0.872
(1.00) 		0.00618
(0.0738) 		0.0576
(0.256) 		0.0412
(0.214) 		0.26
(0.579) 		0.977
(1.00)
DMXL2 33 (9%) 334 0.0117
(0.103) 		0.00183
(0.0357) 		6e-05
(0.00436) 		0.23
(0.536) 		0.17
(0.456) 		0.617
(0.923) 		0.0283
(0.176) 		0.00748
(0.081) 		0.323
(0.647) 		0.208
(0.509) 		0.38
(0.711) 		0.00456
(0.0621)
TRIP12 28 (8%) 339 0.00552
(0.0702) 		0.00709
(0.0788) 		2e-05
(0.00216) 		0.00759
(0.0815) 		0.156
(0.439) 		0.48
(0.807) 		0.065
(0.275) 		1e-05
(0.00134) 		0.487
(0.814) 		0.025
(0.164) 		0.649
(0.95) 		0.647
(0.948)
VEPH1 17 (5%) 350 0.00794
(0.0836) 		0.0167
(0.129) 		0.00037
(0.0131) 		0.204
(0.504) 		0.00476
(0.0639) 		0.568
(0.882) 		0.823
(1.00) 		0.00599
(0.0731) 		0.187
(0.483) 		0.0278
(0.174) 		0.0837
(0.314) 		0.626
(0.932)
KLKB1 13 (4%) 354 0.0301
(0.183) 		0.00275
(0.0448) 		0.00062
(0.0184) 		0.224
(0.528) 		0.42
(0.754) 		0.12
(0.382) 		0.0977
(0.34) 		3e-05
(0.00283) 		0.00099
(0.0248) 		0.00051
(0.0163)
SETX 26 (7%) 341 0.0562
(0.252) 		0.159
(0.439) 		0.00139
(0.0307) 		0.206
(0.507) 		0.518
(0.84) 		0.291
(0.612) 		0.00994
(0.0939) 		0.0139
(0.115) 		0.0151
(0.121) 		0.00136
(0.0304) 		0.00017
(0.00809) 		0.681
(0.977)
ST18 23 (6%) 344 0.158
(0.439) 		0.811
(1.00) 		0.00089
(0.0231) 		0.0502
(0.241) 		0.0153
(0.122) 		0.0285
(0.178) 		0.0151
(0.121) 		0.00683
(0.0772) 		0.00029
(0.0114) 		0.0724
(0.291) 		0.138
(0.41) 		0.652
(0.951)
LAMA3 34 (9%) 333 0.0329
(0.191) 		0.501
(0.826) 		0.00602
(0.0732) 		0.00952
(0.0918) 		0.286
(0.608) 		0.157
(0.439) 		0.00386
(0.0555) 		0.0987
(0.341) 		0.0309
(0.185) 		0.0237
(0.159) 		0.119
(0.38) 		0.886
(1.00)
CDHR3 13 (4%) 354 6e-05
(0.00436) 		0.00134
(0.0302) 		0.0586
(0.258) 		0.414
(0.747) 		0.00041
(0.0142) 		0.0001
(0.00587) 		0.00667
(0.0764) 		0.0184
(0.137) 		0.127
(0.392) 		0.271
(0.594)
AGBL5 12 (3%) 355 0.00214
(0.039) 		0.0722
(0.29) 		0.792
(1.00) 		0.454
(0.786) 		0.0394
(0.208) 		0.00126
(0.0291) 		0.0329
(0.191) 		0.0056
(0.0706) 		0.0328
(0.191) 		0.4
(0.732)
NRAP 24 (7%) 343 0.221
(0.524) 		0.0246
(0.163) 		0.00043
(0.0146) 		0.0208
(0.148) 		0.0859
(0.318) 		0.16
(0.441) 		0.00947
(0.0915) 		0.00142
(0.0312) 		0.092
(0.331) 		0.0268
(0.171) 		0.0902
(0.326) 		0.4
(0.732)
KIF5B 14 (4%) 353 0.189
(0.485) 		0.0389
(0.207) 		0.00861
(0.0873) 		0.923
(1.00) 		0.601
(0.91) 		0.387
(0.718) 		0.963
(1.00) 		0.00206
(0.0385) 		0.0405
(0.211) 		0.0225
(0.155) 		0.0259
(0.168) 		0.261
(0.58)
PUS7 13 (4%) 354 0.0212
(0.149) 		0.0435
(0.221) 		0.00162
(0.0335) 		0.0832
(0.313) 		0.0552
(0.25) 		0.796
(1.00) 		0.0483
(0.236) 		0.00228
(0.0404) 		0.498
(0.823) 		0.00655
(0.0758)
TEX2 12 (3%) 355 0.00036
(0.013) 		0.0376
(0.206) 		0.325
(0.649) 		0.55
(0.867) 		0.00011
(0.00617) 		0.00823
(0.085) 		0.0134
(0.112) 		0.141
(0.415) 		0.0065
(0.0754) 		0.49
(0.815)
MFRP 11 (3%) 356 0.0106
(0.0971) 		0.0389
(0.207) 		0.039
(0.207) 		0.991
(1.00) 		0.0127
(0.108) 		0.00475
(0.0639) 		0.00326
(0.05) 		0.0647
(0.274)
USP1 9 (2%) 358 0.00074
(0.0206) 		0.0134
(0.112) 		0.427
(0.762) 		0.463
(0.794) 		0.00235
(0.041) 		0.00232
(0.0408) 		0.00305
(0.0479) 		0.0433
(0.221) 		0.218
(0.52) 		0.967
(1.00)
CTNND1 18 (5%) 349 0.00014
(0.00717) 		0.317
(0.642) 		0.323
(0.647) 		0.374
(0.704) 		0.00356
(0.0529) 		0.00082
(0.0219) 		0.0191
(0.139) 		0.0108
(0.0979) 		0.00925
(0.0904) 		0.906
(1.00)
CHD5 28 (8%) 339 0.00011
(0.00617) 		0.00017
(0.00809) 		1e-05
(0.00134) 		0.257
(0.575) 		0.0628
(0.27) 		0.854
(1.00) 		0.102
(0.348) 		0.00203
(0.0381) 		0.0344
(0.196) 		0.00413
(0.058) 		0.266
(0.586) 		0.313
(0.638)
C5ORF42 32 (9%) 335 0.00199
(0.0377) 		0.0526
(0.245) 		1e-05
(0.00134) 		0.0182
(0.135) 		0.024
(0.16) 		0.0938
(0.334) 		0.194
(0.492) 		7e-05
(0.00484) 		0.0508
(0.242) 		0.0429
(0.22) 		0.274
(0.597) 		0.457
(0.789)
CSF3R 14 (4%) 353 0.106
(0.356) 		0.112
(0.367) 		0.0001
(0.00587) 		0.0114
(0.101) 		0.339
(0.666) 		0.901
(1.00) 		0.0381
(0.206) 		0.00017
(0.00809) 		0.00194
(0.0372) 		5e-05
(0.00393) 		0.882
(1.00) 		0.885
(1.00)
CUBN 52 (14%) 315 0.00737
(0.0804) 		0.231
(0.537) 		0.00042
(0.0144) 		0.0426
(0.219) 		1
(1.00) 		0.588
(0.899) 		0.149
(0.431) 		0.0202
(0.145) 		0.0164
(0.128) 		0.0161
(0.126) 		0.189
(0.484) 		0.477
(0.805)
BTBD11 22 (6%) 345 0.00027
(0.0109) 		0.0175
(0.132) 		2e-05
(0.00216) 		0.147
(0.427) 		0.371
(0.699) 		0.822
(1.00) 		0.143
(0.419) 		0.00804
(0.0841) 		0.138
(0.41) 		0.0489
(0.237) 		0.025
(0.164) 		0.083
(0.313)
SBNO1 15 (4%) 352 0.655
(0.953) 		0.812
(1.00) 		0.0348
(0.197) 		0.0847
(0.316) 		0.0182
(0.135) 		0.342
(0.668) 		0.368
(0.697) 		0.013
(0.11) 		0.0189
(0.139) 		0.00061
(0.0183) 		0.00072
(0.0202) 		0.546
(0.863)
KIAA1429 17 (5%) 350 0.0158
(0.125) 		0.0429
(0.22) 		3e-05
(0.00283) 		0.074
(0.295) 		0.121
(0.382) 		0.277
(0.601) 		0.0129
(0.11) 		0.00503
(0.0663) 		0.0233
(0.158) 		0.225
(0.529)
MUS81 7 (2%) 360 0.0165
(0.128) 		0.0521
(0.245) 		0.0294
(0.181) 		0.0142
(0.117) 		0.0125
(0.108) 		0.0299
(0.182) 		0.0289
(0.179) 		0.484
(0.812)
PCDHGA8 14 (4%) 353 0.286
(0.608) 		0.451
(0.786) 		0.00012
(0.00654) 		0.0228
(0.156) 		0.343
(0.669) 		0.628
(0.933) 		0.0366
(0.204) 		0.162
(0.444) 		0.029
(0.179) 		0.00164
(0.0337) 		0.00635
(0.0746) 		0.354
(0.682)
LCT 33 (9%) 334 0.00014
(0.00717) 		0.00219
(0.0397) 		0.00562
(0.0707) 		0.388
(0.718) 		0.00017
(0.00809) 		0.0547
(0.249) 		0.911
(1.00) 		0.0161
(0.126) 		0.234
(0.542) 		0.0147
(0.119) 		0.0645
(0.274) 		0.359
(0.687)
MYO3A 37 (10%) 330 0.00588
(0.0725) 		0.00594
(0.0727) 		0.00585
(0.0723) 		0.337
(0.663) 		0.0217
(0.152) 		0.168
(0.453) 		0.528
(0.85) 		0.00312
(0.0486) 		0.107
(0.36) 		0.239
(0.551) 		0.0139
(0.115) 		0.58
(0.891)
TRIP6 10 (3%) 357 0.00108
(0.0261) 		0.00942
(0.0913) 		0.703
(0.993) 		0.578
(0.891) 		0.0002
(0.00899) 		0.00084
(0.0221) 		0.00083
(0.0221) 		0.0361
(0.201) 		0.475
(0.803) 		0.129
(0.396)
FSTL4 15 (4%) 352 0.00186
(0.0362) 		0.0105
(0.0966) 		0.0134
(0.112) 		0.155
(0.438) 		0.00316
(0.049) 		0.00955
(0.0919) 		0.00116
(0.0273) 		0.151
(0.433) 		0.597
(0.908) 		0.723
(1.00)
FRAS1 37 (10%) 330 0.00395
(0.0562) 		0.0843
(0.315) 		0.00011
(0.00617) 		0.286
(0.608) 		0.116
(0.375) 		0.198
(0.496) 		0.00062
(0.0184) 		0.00036
(0.013) 		0.0136
(0.113) 		0.0406
(0.212) 		0.698
(0.989) 		0.858
(1.00)
PTPRN 14 (4%) 353 0.0996
(0.343) 		0.196
(0.495) 		7e-05
(0.00484) 		0.0381
(0.206) 		0.393
(0.724) 		0.728
(1.00) 		0.0384
(0.206) 		0.0194
(0.141) 		0.078
(0.303) 		0.0023
(0.0405) 		0.0257
(0.167) 		0.858
(1.00)
DDX24 13 (4%) 354 0.188
(0.484) 		0.796
(1.00) 		0.00555
(0.0704) 		0.036
(0.201) 		0.205
(0.506) 		0.36
(0.688) 		0.152
(0.435) 		0.0161
(0.126) 		0.0115
(0.102) 		0.0141
(0.116) 		0.0251
(0.165) 		0.103
(0.349)
CUL1 15 (4%) 352 0.0015
(0.0322) 		0.00506
(0.0666) 		0.00278
(0.0452) 		0.0774
(0.301) 		0.602
(0.911) 		0.482
(0.81) 		0.263
(0.583) 		0.00012
(0.00654) 		0.0927
(0.332) 		0.00636
(0.0746) 		0.0326
(0.19) 		0.859
(1.00)
ATP2A2 15 (4%) 352 0.0299
(0.182) 		0.00301
(0.0477) 		0.0019
(0.0366) 		0.306
(0.629) 		0.289
(0.611) 		0.182
(0.475) 		0.0664
(0.278) 		0.00136
(0.0304) 		0.0436
(0.221) 		0.00808
(0.0843)
LYST 34 (9%) 333 0.00029
(0.0114) 		0.00019
(0.0087) 		1e-05
(0.00134) 		0.326
(0.65) 		0.354
(0.682) 		0.344
(0.67) 		0.23
(0.535) 		0.00062
(0.0184) 		0.026
(0.168) 		0.00393
(0.056) 		0.364
(0.694) 		0.251
(0.566)
ACTBL2 16 (4%) 351 1e-05
(0.00134) 		0.00056
(0.0173) 		0.00552
(0.0702) 		0.434
(0.769) 		0.277
(0.601) 		0.753
(1.00) 		0.184
(0.479) 		0.00033
(0.0123) 		0.949
(1.00) 		0.00246
(0.0421) 		0.00631
(0.0744) 		0.175
(0.463)
TET1 23 (6%) 344 0.0117
(0.103) 		0.0066
(0.076) 		0.00039
(0.0137) 		0.151
(0.434) 		0.367
(0.697) 		0.468
(0.796) 		0.218
(0.52) 		1e-05
(0.00134) 		0.0317
(0.187) 		0.00196
(0.0374) 		0.102
(0.348) 		0.923
(1.00)
MLH1 53 (14%) 314 0.784
(1.00) 		0.196
(0.495) 		0.00632
(0.0744) 		0.455
(0.787) 		0.472
(0.801) 		0.256
(0.574) 		6e-05
(0.00436) 		2e-05
(0.00216) 		1e-05
(0.00134) 		0.00015
(0.00753) 		0.208
(0.509) 		0.695
(0.987)
MGA 37 (10%) 330 0.0297
(0.181) 		0.368
(0.697) 		1e-05
(0.00134) 		0.0384
(0.206) 		0.971
(1.00) 		0.926
(1.00) 		0.0364
(0.202) 		4e-05
(0.00342) 		0.238
(0.548) 		0.119
(0.381) 		1
(1.00) 		0.859
(1.00)
RBMX 18 (5%) 349 0.022
(0.153) 		0.258
(0.576) 		0.0378
(0.206) 		0.228
(0.534) 		0.00023
(0.00978) 		0.00174
(0.0346) 		6e-05
(0.00436) 		0.247
(0.562) 		0.945
(1.00) 		0.0843
(0.315)
PLAGL2 6 (2%) 361 0.0315
(0.187) 		0.0309
(0.185) 		1
(1.00) 		0.55
(0.867) 		0.00011
(0.00617) 		0.00019
(0.0087) 		0.00045
(0.0149) 		0.0628
(0.27)
C11ORF30 21 (6%) 346 0.00153
(0.0324) 		0.00183
(0.0357) 		7e-05
(0.00484) 		0.222
(0.524) 		0.00497
(0.0659) 		0.19
(0.486) 		0.134
(0.406) 		0.0254
(0.166) 		0.553
(0.871) 		0.888
(1.00) 		0.955
(1.00) 		0.215
(0.517)
EGR1 9 (2%) 358 0.00354
(0.0529) 		0.0504
(0.241) 		0.199
(0.497) 		0.283
(0.608) 		0.00527
(0.0684) 		0.0016
(0.0332) 		0.003
(0.0476) 		0.00017
(0.00809)
TOP2B 23 (6%) 344 0.265
(0.586) 		0.81
(1.00) 		0.00721
(0.0796) 		0.662
(0.96) 		0.0901
(0.326) 		0.199
(0.497) 		0.042
(0.216) 		0.0232
(0.157) 		0.0222
(0.154) 		0.0196
(0.142) 		0.207
(0.508) 		0.183
(0.477)
RB1 88 (24%) 279 0.783
(1.00) 		0.811
(1.00) 		0.0374
(0.205) 		0.111
(0.366) 		0.0548
(0.249) 		0.279
(0.603) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		0.777
(1.00) 		0.42
(0.754)
C2ORF29 17 (5%) 350 0.242
(0.555) 		0.00183
(0.0357) 		0.356
(0.684) 		0.453
(0.786) 		0.0238
(0.16) 		0.0127
(0.108) 		0.03
(0.183) 		0.00795
(0.0836) 		0.277
(0.601) 		0.68
(0.976)
NAA25 14 (4%) 353 0.00189
(0.0365) 		0.00728
(0.0801) 		0.00027
(0.0109) 		0.875
(1.00) 		0.0627
(0.269) 		0.421
(0.755) 		0.134
(0.405) 		0.00112
(0.0268) 		0.416
(0.75) 		0.00354
(0.0529)
SMAD4 119 (32%) 248 0.0605
(0.264) 		0.14
(0.414) 		0.688
(0.981) 		0.101
(0.345) 		0.216
(0.517) 		0.00491
(0.0653) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		0.328
(0.652) 		0.185
(0.48)
FAHD2B 6 (2%) 361 0.0111
(0.0996) 		0.0309
(0.185) 		1
(1.00) 		0.282
(0.608) 		0.00491
(0.0653) 		0.00495
(0.0657) 		0.00038
(0.0134) 		0.256
(0.574)
GIGYF2 26 (7%) 341 0.00733
(0.0803) 		0.109
(0.363) 		0.00063
(0.0185) 		0.00101
(0.0251) 		0.511
(0.836) 		0.443
(0.781) 		0.072
(0.29) 		0.00091
(0.0234) 		0.00673
(0.0768) 		0.0672
(0.28) 		0.638
(0.941) 		0.336
(0.662)
DNAH12 23 (6%) 344 0.00733
(0.0803) 		0.0163
(0.127) 		5e-05
(0.00393) 		0.0731
(0.293) 		0.681
(0.977) 		0.701
(0.991) 		0.00184
(0.0359) 		0.00701
(0.0784) 		0.215
(0.516) 		0.633
(0.936) 		0.473
(0.801) 		0.47
(0.798)
ARFGEF1 34 (9%) 333 0.00343
(0.0518) 		0.018
(0.134) 		0.0175
(0.132) 		0.654
(0.952) 		0.295
(0.617) 		0.574
(0.888) 		0.185
(0.479) 		0.00843
(0.0861) 		0.273
(0.596) 		0.0164
(0.128) 		0.696
(0.988) 		0.948
(1.00)
FGFR3 22 (6%) 345 0.023
(0.157) 		0.0339
(0.194) 		0.366
(0.696) 		0.147
(0.427) 		0.00178
(0.0351) 		0.00256
(0.0431) 		0.0661
(0.278) 		0.0428
(0.219) 		0.329
(0.653) 		0.811
(1.00)
FAM9A 11 (3%) 356 0.0225
(0.155) 		0.294
(0.616) 		0.34
(0.667) 		0.272
(0.595) 		0.134
(0.405) 		0.0176
(0.132) 		0.0184
(0.137) 		0.00361
(0.0533) 		0.0136
(0.113) 		0.569
(0.883)
EP400 36 (10%) 331 0.00196
(0.0374) 		0.00239
(0.0415) 		0.00228
(0.0404) 		0.0552
(0.25) 		0.879
(1.00) 		0.0582
(0.257) 		0.0587
(0.259) 		0.014
(0.115) 		0.211
(0.511) 		4e-05
(0.00342) 		0.8
(1.00) 		0.301
(0.624)
SLC12A6 20 (5%) 347 0.159
(0.44) 		0.581
(0.891) 		0.00067
(0.0194) 		0.00095
(0.024) 		0.733
(1.00) 		0.282
(0.607) 		0.031
(0.186) 		0.00065
(0.0189) 		2e-05
(0.00216) 		0.0542
(0.248) 		0.244
(0.559) 		0.0603
(0.263)
ZFC3H1 19 (5%) 348 0.483
(0.811) 		0.358
(0.686) 		0.00999
(0.0942) 		0.0932
(0.333) 		0.172
(0.459) 		0.665
(0.963) 		0.0563
(0.252) 		0.0103
(0.0955) 		0.0115
(0.102) 		0.00748
(0.081) 		0.0331
(0.192) 		0.801
(1.00)
PRRG1 11 (3%) 356 0.0788
(0.305) 		0.0418
(0.216) 		0.0874
(0.32) 		0.304
(0.628) 		5e-05
(0.00393) 		0.00033
(0.0123) 		0.00046
(0.0152) 		0.0006
(0.0181) 		0.716
(1.00) 		0.835
(1.00)
TFE3 11 (3%) 356 0.21
(0.511) 		0.156
(0.439) 		0.00297
(0.0473) 		0.0684
(0.282) 		0.293
(0.616) 		0.314
(0.638) 		0.014
(0.115) 		0.00021
(0.00928) 		0.0459
(0.228) 		0.00925
(0.0904)
ARHGAP5 19 (5%) 348 0.047
(0.232) 		0.2
(0.498) 		0.00032
(0.0121) 		0.0494
(0.238) 		0.213
(0.514) 		0.775
(1.00) 		0.122
(0.384) 		0.00072
(0.0202) 		0.559
(0.874) 		0.00244
(0.0419) 		0.111
(0.366) 		0.55
(0.867)
MYO3B 31 (8%) 336 0.151
(0.434) 		0.592
(0.904) 		0.0872
(0.32) 		0.284
(0.608) 		0.0266
(0.171) 		0.00052
(0.0165) 		2e-05
(0.00216) 		0.0393
(0.207) 		0.52
(0.842) 		0.0208
(0.148)
TTF1 9 (2%) 358 0.0191
(0.14) 		0.0344
(0.196) 		0.833
(1.00) 		0.553
(0.87) 		0.00128
(0.0293) 		0.00034
(0.0125) 		0.0883
(0.322) 		0.0308
(0.185) 		0.25
(0.565) 		0.387
(0.718)
MUC17 46 (13%) 321 0.00023
(0.00978) 		0.154
(0.438) 		0.00022
(0.00957) 		0.0876
(0.32) 		0.0303
(0.184) 		0.673
(0.97) 		0.302
(0.625) 		0.00355
(0.0529) 		0.0371
(0.205) 		0.0896
(0.325) 		0.317
(0.642) 		0.604
(0.913)
TSHR 44 (12%) 323 0.0306
(0.184) 		0.0672
(0.28) 		0.0378
(0.206) 		0.725
(1.00) 		0.371
(0.7) 		0.0343
(0.196) 		0.0051
(0.0669) 		1e-05
(0.00134) 		0.125
(0.389) 		0.0601
(0.263) 		0.805
(1.00) 		0.738
(1.00)
EXOC4 18 (5%) 349 0.187
(0.483) 		0.038
(0.206) 		0.0107
(0.0972) 		0.0905
(0.327) 		0.487
(0.814) 		0.415
(0.748) 		0.0004
(0.0139) 		0.00034
(0.0125) 		0.0161
(0.126) 		0.0577
(0.256) 		0.498
(0.823) 		0.935
(1.00)
RIF1 35 (10%) 332 0.017
(0.13) 		0.0134
(0.113) 		0.00029
(0.0114) 		0.327
(0.651) 		0.14
(0.413) 		0.156
(0.439) 		0.303
(0.626) 		0.00265
(0.044) 		0.00113
(0.0269) 		0.0906
(0.327) 		0.261
(0.58) 		0.97
(1.00)
PRDM1 20 (5%) 347 1
(1.00) 		0.154
(0.438) 		0.0818
(0.311) 		0.0391
(0.207) 		0.903
(1.00) 		0.232
(0.54) 		0.0129
(0.11) 		0.0149
(0.12) 		0.00118
(0.0277) 		0.00055
(0.017)
KRAS 168 (46%) 199 0.00016
(0.00786) 		0.00819
(0.0848) 		0.0743
(0.295) 		0.0198
(0.143) 		0.279
(0.604) 		0.159
(0.44) 		3e-05
(0.00283) 		0.00374
(0.0546) 		0.362
(0.691) 		0.0659
(0.278) 		0.603
(0.912) 		0.595
(0.906)
CDC42BPA 29 (8%) 338 0.0174
(0.131) 		0.00044
(0.0147) 		0.00129
(0.0294) 		0.463
(0.793) 		0.0802
(0.308) 		0.11
(0.364) 		0.698
(0.989) 		0.00011
(0.00617) 		0.125
(0.389) 		0.00183
(0.0357) 		0.476
(0.804) 		0.858
(1.00)
IQSEC2 16 (4%) 351 0.238
(0.549) 		0.196
(0.495) 		0.0681
(0.281) 		0.0208
(0.148) 		0.312
(0.637) 		0.296
(0.617) 		5e-05
(0.00393) 		0.00094
(0.0239) 		0.00222
(0.0399) 		1e-05
(0.00134)
DAXX 12 (3%) 355 0.592
(0.903) 		0.755
(1.00) 		0.00666
(0.0764) 		0.167
(0.452) 		0.0283
(0.176) 		0.00901
(0.0891) 		0.00145
(0.0315) 		0.0472
(0.232) 		0.327
(0.652) 		0.541
(0.858)
MEPE 15 (4%) 352 0.0338
(0.194) 		0.118
(0.379) 		0.12
(0.381) 		0.604
(0.913) 		0.0143
(0.117) 		0.00063
(0.0185) 		0.019
(0.139) 		0.0436
(0.221) 		0.206
(0.507) 		1
(1.00)
TNNI3K 24 (7%) 343 0.0174
(0.131) 		0.00686
(0.0774) 		0.0465
(0.23) 		0.599
(0.909) 		0.145
(0.423) 		0.00333
(0.0509) 		0.854
(1.00) 		0.00793
(0.0836) 		0.383
(0.715) 		0.743
(1.00) 		0.078
(0.303) 		0.574
(0.888)
PHF3 23 (6%) 344 0.0277
(0.174) 		0.0166
(0.128) 		0.0451
(0.226) 		0.0481
(0.235) 		0.0325
(0.19) 		0.407
(0.739) 		0.0932
(0.333) 		0.148
(0.429) 		0.346
(0.672) 		0.277
(0.601) 		0.61
(0.918) 		0.21
(0.511)
KIT 96 (26%) 271 0.246
(0.561) 		0.763
(1.00) 		0.131
(0.4) 		0.909
(1.00) 		0.11
(0.364) 		0.00025
(0.0104) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		0.161
(0.442) 		0.989
(1.00)
KIAA1409 39 (11%) 328 5e-05
(0.00393) 		7e-05
(0.00484) 		0.00222
(0.0399) 		0.119
(0.38) 		0.257
(0.575) 		0.385
(0.716) 		0.155
(0.438) 		0.0002
(0.00899) 		0.139
(0.412) 		0.027
(0.171) 		0.765
(1.00) 		0.0821
(0.311)
E2F7 21 (6%) 346 0.00259
(0.0433) 		0.0176
(0.132) 		0.00278
(0.0452) 		0.345
(0.671) 		0.782
(1.00) 		0.833
(1.00) 		0.814
(1.00) 		0.00934
(0.0909) 		0.594
(0.905) 		0.0235
(0.159) 		0.956
(1.00) 		0.39
(0.721)
HGS 10 (3%) 357 0.121
(0.383) 		0.108
(0.36) 		0.573
(0.887) 		0.101
(0.346) 		0.00147
(0.0318) 		0.00024
(0.0101) 		6e-05
(0.00436) 		0.00417
(0.0583) 		0.0066
(0.076) 		0.886
(1.00)
RAB40C 8 (2%) 359 0.0164
(0.128) 		0.137
(0.409) 		0.732
(1.00) 		0.654
(0.953) 		0.00886
(0.0884) 		0.00413
(0.058) 		0.0275
(0.173) 		0.036
(0.201)
RUFY1 13 (4%) 354 0.164
(0.446) 		0.771
(1.00) 		0.732
(1.00) 		0.0377
(0.206) 		1e-05
(0.00134) 		0.00013
(0.00687) 		0.00017
(0.00809) 		0.00971
(0.0928)
IBTK 19 (5%) 348 0.00728
(0.0801) 		0.0166
(0.128) 		0.0423
(0.217) 		0.77
(1.00) 		0.525
(0.847) 		0.96
(1.00) 		0.284
(0.608) 		0.0218
(0.152) 		0.381
(0.712) 		0.0203
(0.145) 		0.816
(1.00) 		0.0732
(0.293)
KCNH7 32 (9%) 335 0.00785
(0.083) 		0.0208
(0.148) 		0.0314
(0.187) 		0.214
(0.515) 		0.00159
(0.0332) 		0.195
(0.494) 		0.536
(0.856) 		0.0285
(0.177) 		0.839
(1.00) 		0.141
(0.416) 		0.612
(0.919) 		0.423
(0.758)
NFASC 32 (9%) 335 0.0397
(0.209) 		0.0421
(0.217) 		0.00163
(0.0336) 		0.66
(0.958) 		0.0355
(0.199) 		0.29
(0.612) 		0.493
(0.817) 		0.00584
(0.0722) 		0.0835
(0.314) 		0.441
(0.778) 		0.16
(0.441) 		0.905
(1.00)
MAP3K4 36 (10%) 331 0.00028
(0.0112) 		0.00241
(0.0417) 		1e-05
(0.00134) 		0.129
(0.395) 		0.778
(1.00) 		0.874
(1.00) 		0.193
(0.491) 		0.00153
(0.0324) 		0.115
(0.373) 		0.0138
(0.114) 		0.0711
(0.288) 		0.27
(0.592)
POLM 11 (3%) 356 0.0256
(0.166) 		0.161
(0.442) 		0.512
(0.837) 		0.386
(0.717) 		0.0135
(0.113) 		0.00565
(0.071) 		0.0356
(0.2) 		0.0188
(0.139)
RBM19 21 (6%) 346 0.00797
(0.0837) 		0.00074
(0.0206) 		0.05
(0.24) 		0.892
(1.00) 		0.00437
(0.0603) 		0.208
(0.509) 		0.721
(1.00) 		0.0048
(0.0643) 		0.288
(0.61) 		0.386
(0.717) 		0.162
(0.444) 		0.394
(0.725)
ARNT2 12 (3%) 355 0.00887
(0.0884) 		0.0509
(0.242) 		0.0056
(0.0706) 		0.436
(0.771) 		0.292
(0.614) 		0.835
(1.00) 		0.0435
(0.221) 		0.00604
(0.0733) 		0.559
(0.874) 		0.0155
(0.123) 		0.657
(0.955) 		0.699
(0.99)
SYNRG 16 (4%) 351 0.0301
(0.183) 		0.00269
(0.0443) 		0.0338
(0.194) 		0.0454
(0.227) 		0.0818
(0.311) 		0.411
(0.744) 		0.132
(0.403) 		0.00036
(0.013) 		0.243
(0.557) 		0.0877
(0.321) 		0.0842
(0.315) 		0.745
(1.00)
AKAP9 43 (12%) 324 0.00031
(0.0119) 		0.0002
(0.00899) 		1e-05
(0.00134) 		0.212
(0.513) 		0.246
(0.561) 		0.505
(0.83) 		0.0512
(0.243) 		0.00255
(0.043) 		0.00395
(0.0562) 		0.127
(0.393) 		0.258
(0.576) 		0.0731
(0.293)
SCN2A 45 (12%) 322 0.0056
(0.0706) 		0.00168
(0.0342) 		0.00223
(0.0399) 		0.97
(1.00) 		0.359
(0.687) 		0.0856
(0.317) 		0.725
(1.00) 		0.00058
(0.0176) 		0.104
(0.352) 		0.0296
(0.181) 		0.719
(1.00) 		0.509
(0.835)
WBP11 8 (2%) 359 0.0024
(0.0416) 		0.05
(0.24) 		1
(1.00) 		0.672
(0.97) 		0.0432
(0.22) 		0.05
(0.24) 		0.00551
(0.0702) 		0.0797
(0.307)
FAM26E 5 (1%) 362 0.032
(0.188) 		0.208
(0.509) 		0.295
(0.616) 		0.561
(0.875) 		0.0137
(0.114) 		0.00656
(0.0758) 		0.0466
(0.231) 		0.00173
(0.0345)
KDM2B 20 (5%) 347 0.12
(0.382) 		0.0862
(0.319) 		0.0249
(0.164) 		0.0505
(0.241) 		0.176
(0.466) 		0.518
(0.84) 		0.0517
(0.244) 		0.00252
(0.0427) 		0.00062
(0.0184) 		0.0002
(0.00899) 		0.00657
(0.0758) 		0.146
(0.425)
POLE 31 (8%) 336 0.00046
(0.0152) 		0.00047
(0.0154) 		5e-05
(0.00393) 		0.301
(0.624) 		0.178
(0.468) 		0.939
(1.00) 		0.236
(0.546) 		0.00044
(0.0147) 		0.266
(0.586) 		0.132
(0.4) 		0.015
(0.121) 		0.352
(0.68)
GGT5 14 (4%) 353 0.0456
(0.227) 		0.0858
(0.318) 		0.346
(0.672) 		0.827
(1.00) 		0.0127
(0.108) 		0.00633
(0.0745) 		0.0109
(0.0982) 		0.0707
(0.287) 		0.0254
(0.166) 		0.466
(0.796)
ATAD5 21 (6%) 346 0.0273
(0.172) 		0.111
(0.365) 		1e-05
(0.00134) 		0.225
(0.528) 		0.284
(0.608) 		0.901
(1.00) 		0.0797
(0.307) 		0.00018
(0.00839) 		0.0578
(0.256) 		2e-05
(0.00216) 		0.00041
(0.0142) 		0.115
(0.373)
TAT 14 (4%) 353 0.00888
(0.0884) 		0.0506
(0.241) 		0.00017
(0.00809) 		0.213
(0.514) 		0.249
(0.565) 		0.372
(0.701) 		0.163
(0.444) 		0.00273
(0.0445) 		0.0305
(0.184) 		0.373
(0.703) 		0.00643
(0.075) 		0.487
(0.814)
APOB 54 (15%) 313 0.00132
(0.0298) 		0.00459
(0.0624) 		0.00513
(0.0672) 		0.0537
(0.247) 		0.48
(0.807) 		0.33
(0.654) 		0.0715
(0.289) 		8e-05
(0.00531) 		0.0273
(0.172) 		0.275
(0.599) 		0.607
(0.916) 		0.584
(0.894)
DSG4 21 (6%) 346 0.029
(0.179) 		0.00249
(0.0424) 		0.0001
(0.00587) 		0.313
(0.638) 		0.332
(0.657) 		0.0557
(0.251) 		0.62
(0.927) 		0.00148
(0.032) 		0.00784
(0.083) 		0.43
(0.765) 		0.091
(0.328) 		0.832
(1.00)
LAMB4 26 (7%) 341 0.00869
(0.0877) 		0.0346
(0.196) 		0.29
(0.612) 		0.0468
(0.231) 		0.0263
(0.169) 		0.23
(0.535) 		0.777
(1.00) 		0.00767
(0.0818) 		0.343
(0.67) 		0.15
(0.432) 		0.863
(1.00) 		0.952
(1.00)
CCDC88A 30 (8%) 337 0.00515
(0.0673) 		0.126
(0.391) 		0.00023
(0.00978) 		0.0361
(0.201) 		0.195
(0.494) 		0.58
(0.891) 		0.106
(0.357) 		0.00422
(0.0588) 		0.357
(0.686) 		0.18
(0.471) 		0.0144
(0.117) 		0.252
(0.568)
KDM5C 21 (6%) 346 0.00091
(0.0234) 		0.00144
(0.0314) 		0.135
(0.406) 		0.632
(0.936) 		0.904
(1.00) 		0.00432
(0.0597) 		0.654
(0.952) 		0.00768
(0.0818) 		0.706
(0.996) 		0.0373
(0.205)
CDH8 33 (9%) 334 0.0129
(0.109) 		0.00035
(0.0128) 		0.0004
(0.0139) 		0.671
(0.969) 		0.687
(0.98) 		0.425
(0.76) 		0.672
(0.97) 		0.00349
(0.0524) 		0.0172
(0.131) 		0.157
(0.439) 		0.082
(0.311) 		0.969
(1.00)
AP1G2 13 (4%) 354 0.00026
(0.0106) 		0.00075
(0.0207) 		0.00308
(0.0482) 		0.162
(0.443) 		0.0484
(0.236) 		0.468
(0.796) 		0.0367
(0.204) 		0.0841
(0.315) 		0.199
(0.497) 		0.15
(0.432) 		0.656
(0.955) 		0.696
(0.988)
ALDOB 15 (4%) 352 0.00179
(0.0353) 		0.00254
(0.0429) 		0.00013
(0.00687) 		0.0355
(0.199) 		0.154
(0.438) 		0.773
(1.00) 		0.18
(0.473) 		0.0002
(0.00899) 		0.586
(0.897) 		0.434
(0.769) 		0.481
(0.809) 		0.697
(0.989)
IL2RG 7 (2%) 360 0.00729
(0.0802) 		0.137
(0.409) 		0.231
(0.538) 		0.263
(0.583) 		0.00219
(0.0397) 		0.0161
(0.126) 		0.0384
(0.206) 		0.102
(0.349) 		0.00618
(0.0738) 		0.537
(0.857)
ARHGAP32 24 (7%) 343 0.0267
(0.171) 		0.0159
(0.125) 		0.0444
(0.224) 		0.104
(0.352) 		0.659
(0.957) 		0.386
(0.717) 		0.154
(0.438) 		0.00157
(0.0329) 		0.0978
(0.34) 		0.0462
(0.229)
PTCH2 17 (5%) 350 0.00895
(0.0889) 		0.0101
(0.0946) 		0.0239
(0.16) 		0.12
(0.381) 		0.236
(0.547) 		0.307
(0.63) 		0.599
(0.909) 		0.0038
(0.0551) 		0.307
(0.631) 		0.251
(0.566) 		0.00936
(0.0909) 		0.572
(0.886)
TOP2A 17 (5%) 350 0.00106
(0.0259) 		0.295
(0.616) 		0.93
(1.00) 		0.512
(0.837) 		0.0487
(0.237) 		0.00151
(0.0322) 		0.00166
(0.0339) 		0.0136
(0.113)
CRYGA 5 (1%) 362 0.062
(0.268) 		0.0116
(0.102) 		0.138
(0.41) 		0.462
(0.792) 		0.00063
(0.0185) 		0.0203
(0.145) 		0.00166
(0.0339) 		0.00304
(0.0478)
SMC1B 19 (5%) 348 0.0299
(0.182) 		0.321
(0.646) 		0.00037
(0.0131) 		0.0207
(0.147) 		0.429
(0.764) 		0.657
(0.955) 		0.0487
(0.237) 		0.0361
(0.201) 		0.134
(0.405) 		0.233
(0.54) 		0.0687
(0.282) 		0.19
(0.485)
CBLL1 5 (1%) 362 0.0322
(0.189) 		0.0815
(0.31) 		1
(1.00) 		0.0461
(0.229) 		0.019
(0.139) 		0.0146
(0.118) 		0.115
(0.373) 		0.016
(0.126)
CETN3 6 (2%) 361 0.0119
(0.104) 		0.0802
(0.308) 		0.00175
(0.0347) 		0.533
(0.855) 		0.0044
(0.0605) 		0.00353
(0.0528) 		0.0054
(0.0693) 		0.237
(0.547)
POLD3 11 (3%) 356 0.00342
(0.0518) 		0.0398
(0.209) 		0.0755
(0.298) 		0.0373
(0.205) 		0.0454
(0.226) 		0.00987
(0.0935) 		0.124
(0.386) 		0.0663
(0.278) 		0.25
(0.566) 		0.698
(0.989)
YSK4 26 (7%) 341 0.00822
(0.085) 		0.00521
(0.0679) 		0.00933
(0.0909) 		0.956
(1.00) 		0.0408
(0.212) 		0.326
(0.65) 		0.892
(1.00) 		0.00314
(0.0488) 		0.505
(0.831) 		0.0623
(0.268) 		0.267
(0.588) 		0.792
(1.00)
ING1 10 (3%) 357 0.786
(1.00) 		0.579
(0.891) 		0.00871
(0.0877) 		0.0119
(0.104) 		1
(1.00) 		0.836
(1.00) 		0.0319
(0.188) 		0.041
(0.213) 		0.12
(0.381) 		0.0241
(0.161)
C7ORF50 5 (1%) 362 0.323
(0.647) 		0.0354
(0.199) 		0.68
(0.977) 		0.453
(0.786) 		0.0136
(0.113) 		0.0438
(0.222) 		0.0477
(0.234) 		0.00271
(0.0445)
MANBA 12 (3%) 355 0.00754
(0.0814) 		0.00058
(0.0176) 		0.0155
(0.123) 		0.447
(0.784) 		0.0392
(0.207) 		0.0878
(0.321) 		0.861
(1.00) 		0.00528
(0.0684) 		0.174
(0.463) 		0.649
(0.95)
C7ORF58 21 (6%) 346 0.0752
(0.297) 		0.0668
(0.279) 		0.00415
(0.0581) 		0.0573
(0.255) 		0.0371
(0.205) 		0.268
(0.59) 		0.39
(0.72) 		0.0681
(0.281) 		0.00134
(0.0302) 		0.0344
(0.196) 		0.00907
(0.0893) 		0.211
(0.512)
COL6A5 33 (9%) 334 0.404
(0.736) 		0.0513
(0.243) 		0.0335
(0.193) 		0.22
(0.522) 		0.00984
(0.0934) 		0.0484
(0.236) 		0.16
(0.441) 		0.00656
(0.0758) 		0.313
(0.638) 		0.00571
(0.0714) 		0.339
(0.666) 		0.487
(0.814)
EYS 38 (10%) 329 0.00208
(0.0387) 		0.00064
(0.0187) 		0.00137
(0.0305) 		0.377
(0.707) 		0.488
(0.814) 		0.0418
(0.216) 		0.0952
(0.336) 		0.00014
(0.00717) 		0.0785
(0.304) 		0.0525
(0.245) 		0.294
(0.616) 		0.0724
(0.291)
ZNF555 8 (2%) 359 0.00941
(0.0912) 		0.00976
(0.0931) 		0.039
(0.207) 		0.209
(0.51) 		0.197
(0.495) 		0.459
(0.791) 		0.0389
(0.207) 		0.0155
(0.123) 		0.121
(0.383) 		0.187
(0.483)
MED13 20 (5%) 347 0.0531
(0.247) 		0.0688
(0.282) 		0.00049
(0.0158) 		0.708
(0.998) 		0.128
(0.394) 		0.791
(1.00) 		0.0318
(0.188) 		0.0217
(0.152) 		0.397
(0.729) 		0.00109
(0.0263) 		0.00621
(0.074) 		0.536
(0.856)
DACT1 15 (4%) 352 0.287
(0.608) 		0.155
(0.439) 		0.00019
(0.0087) 		0.0397
(0.209) 		0.112
(0.366) 		0.954
(1.00) 		0.0113
(0.101) 		0.00386
(0.0555) 		0.0289
(0.179) 		0.0832
(0.313)
HLA-B 11 (3%) 356 0.00016
(0.00786) 		0.0169
(0.13) 		0.712
(1.00) 		0.46
(0.791) 		0.00012
(0.00654) 		1e-05
(0.00134) 		0.00013
(0.00687) 		0.201
(0.499)
HERC1 31 (8%) 336 0.00507
(0.0666) 		0.018
(0.134) 		0.00343
(0.0518) 		0.0373
(0.205) 		0.328
(0.653) 		0.351
(0.68) 		0.866
(1.00) 		0.0018
(0.0354) 		0.684
(0.978) 		0.215
(0.517) 		0.102
(0.348) 		0.116
(0.375)
SNAPC2 6 (2%) 361 0.0113
(0.101) 		0.0365
(0.203) 		1
(1.00) 		0.807
(1.00) 		0.0233
(0.158) 		0.00309
(0.0483) 		0.0888
(0.323) 		0.00151
(0.0322)
FBXO38 18 (5%) 349 0.783
(1.00) 		0.197
(0.495) 		0.00454
(0.062) 		0.0373
(0.205) 		0.0357
(0.2) 		0.177
(0.466) 		0.108
(0.362) 		0.00577
(0.0718) 		0.00409
(0.0577) 		0.656
(0.954) 		0.0874
(0.32) 		0.42
(0.754)
PACS2 5 (1%) 362 0.0316
(0.187) 		0.0834
(0.313) 		0.561
(0.875) 		0.637
(0.94) 		0.0193
(0.14) 		0.0209
(0.148) 		0.0151
(0.121) 		0.0375
(0.206) 		0.954
(1.00) 		0.696
(0.988)
DNAH8 59 (16%) 308 0.0119
(0.104) 		0.0234
(0.158) 		0.00413
(0.058) 		0.205
(0.504) 		0.0951
(0.336) 		0.496
(0.822) 		0.257
(0.576) 		0.00211
(0.0388) 		0.0826
(0.312) 		0.149
(0.43) 		0.00092
(0.0236) 		0.0666
(0.279)
KCTD9 5 (1%) 362 0.0317
(0.187) 		0.0375
(0.206) 		0.0619
(0.267) 		0.706
(0.996) 		0.00049
(0.0158) 		0.00108
(0.0261) 		0.0017
(0.0344) 		0.276
(0.599) 		0.623
(0.929) 		0.0842
(0.315)
B4GALT6 10 (3%) 357 0.0971
(0.339) 		0.197
(0.495) 		0.00131
(0.0297) 		0.0371
(0.205) 		0.903
(1.00) 		0.347
(0.674) 		0.145
(0.423) 		0.00736
(0.0804) 		0.046
(0.228) 		0.00885
(0.0884)
OR6K2 14 (4%) 353 0.784
(1.00) 		0.197
(0.495) 		0.00156
(0.0328) 		0.0205
(0.146) 		0.207
(0.507) 		0.701
(0.991) 		0.00207
(0.0386) 		0.00137
(0.0305) 		0.00374
(0.0546) 		0.678
(0.975)
UHRF1BP1L 20 (5%) 347 0.00262
(0.0436) 		0.00057
(0.0175) 		0.0227
(0.156) 		0.489
(0.815) 		0.0393
(0.208) 		0.392
(0.723) 		0.78
(1.00) 		0.00098
(0.0246) 		0.651
(0.951) 		0.0818
(0.311) 		0.323
(0.647) 		0.453
(0.786)
AFF3 22 (6%) 345 0.0161
(0.126) 		0.00495
(0.0657) 		0.00037
(0.0131) 		0.0262
(0.169) 		0.689
(0.981) 		0.76
(1.00) 		0.248
(0.563) 		0.064
(0.272) 		0.103
(0.35) 		0.00956
(0.092) 		0.217
(0.519) 		0.487
(0.814)
MYST3 24 (7%) 343 0.0186
(0.138) 		0.00618
(0.0738) 		0.0242
(0.161) 		0.841
(1.00) 		0.21
(0.51) 		0.593
(0.905) 		0.111
(0.366) 		0.0265
(0.17) 		0.122
(0.384) 		0.00233
(0.0408) 		0.648
(0.949) 		0.317
(0.643)
ARID2 31 (8%) 336 0.00583
(0.0721) 		0.00673
(0.0768) 		0.00084
(0.0221) 		0.201
(0.5) 		0.113
(0.369) 		0.0471
(0.232) 		0.125
(0.39) 		0.00667
(0.0764) 		0.111
(0.366) 		0.461
(0.792) 		0.5
(0.825) 		0.0878
(0.321)
RNF219 14 (4%) 353 0.201
(0.5) 		0.633
(0.936) 		0.417
(0.751) 		0.0676
(0.28) 		0.0149
(0.12) 		0.00065
(0.0189) 		0.00147
(0.0318) 		0.0131
(0.111) 		0.0326
(0.19) 		0.68
(0.976)
ZMYND8 25 (7%) 342 0.516
(0.839) 		0.321
(0.646) 		0.011
(0.0994) 		0.00723
(0.0797) 		0.285
(0.608) 		0.276
(0.6) 		0.00178
(0.0351) 		0.00016
(0.00786) 		0.0864
(0.319) 		0.0176
(0.132) 		0.54
(0.858) 		0.427
(0.762)
ULK2 12 (3%) 355 0.00021
(0.00928) 		0.0522
(0.245) 		0.155
(0.439) 		0.196
(0.494) 		0.0135
(0.113) 		8e-05
(0.00531) 		0.0463
(0.229) 		0.00209
(0.0387)
CDK5RAP2 23 (6%) 344 0.187
(0.483) 		0.45
(0.786) 		3e-05
(0.00283) 		0.00768
(0.0818) 		0.284
(0.608) 		0.285
(0.608) 		0.0713
(0.288) 		0.00575
(0.0716) 		0.0166
(0.128) 		0.0228
(0.156) 		0.362
(0.691) 		0.313
(0.638)
RIMS2 36 (10%) 331 0.00411
(0.0578) 		0.196
(0.495) 		0.00081
(0.0217) 		0.224
(0.528) 		0.138
(0.409) 		0.00255
(0.043) 		0.0436
(0.221) 		0.0263
(0.169) 		0.053
(0.246) 		0.407
(0.739) 		0.207
(0.507) 		0.855
(1.00)
ESR1 19 (5%) 348 0.0245
(0.162) 		0.0203
(0.145) 		0.00031
(0.0119) 		0.323
(0.646) 		0.367
(0.697) 		0.213
(0.514) 		0.0611
(0.266) 		9e-05
(0.00567) 		0.0175
(0.132) 		0.105
(0.355) 		0.215
(0.517) 		0.925
(1.00)
ATRNL1 22 (6%) 345 0.0302
(0.183) 		0.0234
(0.158) 		0.00187
(0.0363) 		0.123
(0.385) 		0.0397
(0.209) 		0.0852
(0.317) 		0.573
(0.887) 		0.00291
(0.0467) 		0.456
(0.788) 		0.143
(0.419) 		0.264
(0.584) 		0.976
(1.00)
GLTSCR1 11 (3%) 356 0.111
(0.366) 		0.00938
(0.091) 		0.172
(0.459) 		0.214
(0.515) 		0.0223
(0.155) 		0.00986
(0.0935) 		0.0666
(0.279) 		0.0341
(0.196) 		0.00073
(0.0203) 		0.4
(0.732)
RBM16 15 (4%) 352 0.0742
(0.295) 		0.0674
(0.28) 		0.0293
(0.18) 		0.161
(0.443) 		0.105
(0.356) 		0.518
(0.84) 		0.612
(0.919) 		0.0181
(0.135) 		0.636
(0.939) 		0.0121
(0.105) 		0.0257
(0.167) 		0.027
(0.171)
TMPRSS15 22 (6%) 345 0.0169
(0.13) 		0.0345
(0.196) 		0.287
(0.609) 		0.947
(1.00) 		0.0602
(0.263) 		0.492
(0.817) 		0.746
(1.00) 		0.15
(0.432) 		0.028
(0.175) 		0.089
(0.323) 		0.0448
(0.225) 		0.02
(0.144)
FBXO40 16 (4%) 351 0.0988
(0.341) 		0.199
(0.497) 		0.0671
(0.28) 		0.394
(0.725) 		0.00685
(0.0773) 		0.653
(0.952) 		0.526
(0.849) 		0.0043
(0.0595) 		0.0144
(0.117) 		0.0113
(0.101) 		0.00642
(0.0749) 		0.491
(0.816)
SMC4 18 (5%) 349 0.0078
(0.0827) 		0.0204
(0.146) 		0.00031
(0.0119) 		0.439
(0.775) 		0.243
(0.556) 		0.372
(0.701) 		0.013
(0.11) 		0.01
(0.0943) 		0.287
(0.609) 		0.154
(0.438)
CCL14 5 (1%) 362 0.0628
(0.27) 		0.0359
(0.201) 		0.537
(0.857) 		0.148
(0.428) 		0.0136
(0.113) 		0.00641
(0.0749) 		0.00662
(0.0761) 		0.0401
(0.21)
EPHA4 19 (5%) 348 0.00163
(0.0336) 		0.00248
(0.0423) 		0.0004
(0.0139) 		0.0557
(0.251) 		0.219
(0.522) 		0.478
(0.806) 		0.0826
(0.312) 		0.00075
(0.0207) 		0.061
(0.265) 		0.0236
(0.159) 		0.411
(0.744) 		0.238
(0.549)
STK10 14 (4%) 353 0.00884
(0.0883) 		0.0208
(0.148) 		0.542
(0.859) 		0.482
(0.81) 		0.00107
(0.0261) 		0.00242
(0.0417) 		0.00101
(0.0251) 		0.118
(0.379)
RAPGEF2 21 (6%) 346 0.0261
(0.169) 		0.111
(0.365) 		1e-05
(0.00134) 		0.0489
(0.237) 		0.1
(0.344) 		0.618
(0.924) 		0.00128
(0.0293) 		0.00015
(0.00753) 		0.0741
(0.295) 		0.129
(0.396) 		0.121
(0.383) 		0.165
(0.446)
DENND2C 18 (5%) 349 0.044
(0.223) 		0.362
(0.691) 		2e-05
(0.00216) 		0.038
(0.206) 		0.763
(1.00) 		0.924
(1.00) 		0.0178
(0.133) 		0.181
(0.473) 		0.0576
(0.256) 		0.0275
(0.173) 		0.127
(0.392) 		0.951
(1.00)
PEAR1 11 (3%) 356 0.0534
(0.247) 		0.0382
(0.206) 		0.0113
(0.101) 		0.0682
(0.282) 		0.467
(0.796) 		0.364
(0.694) 		0.441
(0.777) 		0.00554
(0.0703) 		0.175
(0.463) 		0.00771
(0.082) 		0.0218
(0.152) 		0.319
(0.646)
ASPN 7 (2%) 360 0.0111
(0.0996) 		0.0311
(0.186) 		1
(1.00) 		0.152
(0.435) 		0.00132
(0.0298) 		0.0386
(0.206) 		0.00286
(0.0462) 		0.405
(0.737)
SEMA3C 12 (3%) 355 0.00809
(0.0843) 		0.0171
(0.13) 		1
(1.00) 		0.759
(1.00) 		0.00598
(0.073) 		0.00157
(0.0329) 		0.0532
(0.247) 		8e-05
(0.00531) 		0.101
(0.345) 		0.539
(0.858)
ZNF615 17 (5%) 350 0.159
(0.44) 		0.81
(1.00) 		0.021
(0.148) 		0.0805
(0.308) 		0.0108
(0.0982) 		0.0842
(0.315) 		0.0185
(0.137) 		0.0173
(0.131) 		0.878
(1.00) 		0.134
(0.405) 		0.00635
(0.0746) 		0.489
(0.815)
SOX9 36 (10%) 331 0.278
(0.602) 		0.518
(0.84) 		0.00375
(0.0546) 		0.0059
(0.0725) 		1
(1.00) 		0.274
(0.597) 		0.00108
(0.0261) 		0.00013
(0.00687) 		0.315
(0.64) 		0.108
(0.362) 		0.0556
(0.251) 		0.407
(0.739)
TPRKB 10 (3%) 357 0.119
(0.381) 		0.212
(0.513) 		0.732
(1.00) 		0.513
(0.837) 		0.0118
(0.103) 		0.00873
(0.0877) 		0.0481
(0.235) 		0.0202
(0.145)
ALDH1A3 18 (5%) 349 0.0292
(0.18) 		0.318
(0.644) 		0.00234
(0.0409) 		0.118
(0.379) 		0.337
(0.663) 		0.663
(0.961) 		0.00393
(0.056) 		0.00136
(0.0304) 		0.095
(0.336) 		0.0761
(0.299) 		0.12
(0.381) 		0.541
(0.858)
ZDHHC7 12 (3%) 355 0.00898
(0.0889) 		0.0512
(0.243) 		0.0404
(0.211) 		0.155
(0.438) 		0.0244
(0.162) 		0.191
(0.488) 		0.83
(1.00) 		0.0237
(0.159) 		0.827
(1.00) 		0.485
(0.813) 		0.777
(1.00) 		0.353
(0.681)
LINGO4 10 (3%) 357 0.158
(0.439) 		0.00991
(0.0938) 		0.0224
(0.155) 		1
(1.00) 		0.608
(0.916) 		0.681
(0.977) 		0.337
(0.663) 		0.0314
(0.187) 		0.427
(0.762) 		0.00843
(0.0861)
PIK3R1 43 (12%) 324 0.22
(0.523) 		0.715
(1.00) 		0.422
(0.756) 		0.389
(0.719) 		0.00562
(0.0707) 		0.0569
(0.254) 		0.0215
(0.151) 		0.00043
(0.0146) 		0.00161
(0.0334) 		0.108
(0.36) 		0.715
(1.00) 		0.645
(0.946)
GGT1 8 (2%) 359 0.12
(0.382) 		0.00368
(0.0541) 		0.732
(1.00) 		0.602
(0.911) 		0.0021
(0.0388) 		0.0026
(0.0434) 		0.00503
(0.0663) 		0.796
(1.00) 		0.191
(0.488) 		0.217
(0.518)
CDK12 29 (8%) 338 0.487
(0.814) 		0.613
(0.92) 		0.00171
(0.0344) 		0.112
(0.367) 		0.961
(1.00) 		0.894
(1.00) 		0.0147
(0.119) 		0.0165
(0.128) 		0.00568
(0.0713) 		0.114
(0.37) 		0.278
(0.602) 		0.859
(1.00)
CDX2 6 (2%) 361 0.031
(0.186) 		0.0818
(0.311) 		1
(1.00) 		0.807
(1.00) 		0.0295
(0.181) 		0.00223
(0.0399) 		0.0121
(0.105) 		0.109
(0.363)
TPM4 8 (2%) 359 0.282
(0.608) 		0.0383
(0.206) 		0.0385
(0.206) 		0.86
(1.00) 		0.54
(0.858) 		0.91
(1.00) 		0.745
(1.00) 		0.0471
(0.232) 		0.234
(0.543) 		0.0292
(0.18)
GGTLC2 7 (2%) 360 0.651
(0.951) 		0.122
(0.384) 		0.201
(0.5) 		0.555
(0.871) 		0.00323
(0.0497) 		0.0166
(0.128) 		0.0178
(0.133) 		0.00581
(0.072)
RNF128 14 (4%) 353 0.00138
(0.0307) 		0.0305
(0.184) 		0.311
(0.635) 		0.205
(0.505) 		4e-05
(0.00342) 		0.0005
(0.016) 		0.0505
(0.241) 		0.529
(0.851) 		0.251
(0.566) 		0.697
(0.989)
TNMD 11 (3%) 356 0.782
(1.00) 		0.0525
(0.245) 		0.0225
(0.155) 		0.049
(0.237) 		0.908
(1.00) 		0.699
(0.99) 		0.0493
(0.238) 		0.00032
(0.0121) 		0.126
(0.391) 		0.325
(0.649) 		0.151
(0.433) 		0.884
(1.00)
THOC5 14 (4%) 353 0.188
(0.484) 		0.452
(0.786) 		0.00878
(0.088) 		0.0933
(0.333) 		0.698
(0.989) 		0.914
(1.00) 		0.00646
(0.0752) 		0.00881
(0.0882) 		0.0373
(0.205) 		0.0949
(0.336) 		0.258
(0.576) 		0.976
(1.00)
SENP6 15 (4%) 352 0.0641
(0.272) 		0.158
(0.439) 		0.205
(0.505) 		0.411
(0.745) 		0.00336
(0.0512) 		9e-05
(0.00567) 		0.00025
(0.0104) 		0.00129
(0.0294)
GLI1 18 (5%) 349 0.188
(0.483) 		0.453
(0.786) 		0.00262
(0.0436) 		0.198
(0.496) 		0.0264
(0.17) 		0.359
(0.687) 		0.089
(0.323) 		0.018
(0.134) 		0.00257
(0.0431) 		0.0841
(0.315) 		0.54
(0.858) 		0.162
(0.444)
MEN1 24 (7%) 343 0.494
(0.819) 		0.245
(0.559) 		0.109
(0.363) 		0.487
(0.814) 		0.0002
(0.00899) 		6e-05
(0.00436) 		0.00049
(0.0158) 		0.00752
(0.0812) 		0.061
(0.265) 		0.5
(0.825)
FGFR2 45 (12%) 322 0.294
(0.616) 		0.295
(0.616) 		0.0988
(0.341) 		0.252
(0.568) 		1e-05
(0.00134) 		1e-05
(0.00134) 		1e-05
(0.00134) 		2e-05
(0.00216) 		0.588
(0.899) 		0.316
(0.642)
CLSPN 30 (8%) 337 0.784
(1.00) 		1
(1.00) 		0.0476
(0.234) 		0.0702
(0.286) 		0.301
(0.623) 		0.253
(0.569) 		0.0197
(0.142) 		0.00764
(0.0818) 		0.0111
(0.0997) 		0.0946
(0.335) 		0.597
(0.908) 		0.88
(1.00)
KLHL10 19 (5%) 348 0.526
(0.848) 		0.612
(0.919) 		0.116
(0.374) 		0.167
(0.451) 		0.00256
(0.0431) 		0.0001
(0.00587) 		0.002
(0.0377) 		0.0132
(0.111) 		0.743
(1.00) 		0.889
(1.00)
MMP13 13 (4%) 354 0.223
(0.525) 		0.161
(0.442) 		0.394
(0.725) 		0.252
(0.568) 		0.00612
(0.0738) 		0.0125
(0.108) 		0.0445
(0.224) 		0.0022
(0.0398) 		0.314
(0.638) 		0.467
(0.796)
KRT2 14 (4%) 353 0.541
(0.858) 		0.676
(0.974) 		0.0893
(0.324) 		0.17
(0.456) 		0.0151
(0.121) 		0.0105
(0.0966) 		0.0313
(0.187) 		0.0309
(0.185) 		0.876
(1.00) 		0.565
(0.878)
HIPK2 24 (7%) 343 0.29
(0.612) 		0.65
(0.95) 		0.012
(0.105) 		0.533
(0.854) 		0.00534
(0.0687) 		0.00021
(0.00928) 		0.00516
(0.0674) 		0.116
(0.375) 		0.979
(1.00) 		0.96
(1.00)
ERCC5 20 (5%) 347 0.282
(0.608) 		0.0381
(0.206) 		0.048
(0.235) 		0.347
(0.674) 		0.709
(0.999) 		0.53
(0.852) 		0.0105
(0.0961) 		0.00079
(0.0214) 		0.346
(0.672) 		0.715
(1.00) 		0.451
(0.786) 		0.11
(0.363)
OSBPL2 11 (3%) 356 0.333
(0.658) 		0.54
(0.858) 		0.136
(0.409) 		0.0845
(0.315) 		0.00882
(0.0882) 		0.0167
(0.129) 		0.01
(0.0943) 		0.0171
(0.13)
ASB11 8 (2%) 359 0.0378
(0.206) 		0.321
(0.646) 		0.0533
(0.247) 		0.7
(0.99) 		0.00084
(0.0221) 		0.0163
(0.127) 		0.0387
(0.207) 		0.0941
(0.334)
GNPAT 17 (5%) 350 0.522
(0.844) 		0.348
(0.675) 		0.178
(0.469) 		0.0541
(0.248) 		0.047
(0.232) 		0.00126
(0.0291) 		0.00356
(0.0529) 		0.232
(0.539) 		0.00137
(0.0305) 		0.676
(0.973)
TIAL1 12 (3%) 355 0.287
(0.608) 		0.0385
(0.206) 		0.00187
(0.0363) 		0.295
(0.616) 		0.502
(0.827) 		0.882
(1.00) 		0.0768
(0.3) 		7e-05
(0.00484) 		0.0935
(0.334) 		0.0411
(0.213)
C12ORF40 21 (6%) 346 0.322
(0.646) 		0.544
(0.86) 		0.674
(0.972) 		0.612
(0.919) 		0.00139
(0.0307) 		0.00109
(0.0263) 		4e-05
(0.00342) 		3e-05
(0.00283) 		0.178
(0.468) 		0.626
(0.932)
GNAS 32 (9%) 335 0.484
(0.812) 		0.727
(1.00) 		0.332
(0.657) 		0.212
(0.513) 		0.269
(0.591) 		0.211
(0.512) 		0.0125
(0.108) 		9e-05
(0.00567) 		0.0246
(0.163) 		0.00813
(0.0845) 		0.134
(0.405) 		0.211
(0.512)
RUNX1 37 (10%) 330 0.158
(0.439) 		0.579
(0.891) 		0.0828
(0.312) 		0.403
(0.735) 		0.0871
(0.32) 		0.131
(0.399) 		0.00144
(0.0314) 		0.00215
(0.0391) 		0.00016
(0.00786) 		0.00133
(0.03) 		0.548
(0.865) 		0.963
(1.00)
IFT57 10 (3%) 357 0.121
(0.383) 		0.759
(1.00) 		0.289
(0.611) 		0.22
(0.523) 		0.0253
(0.166) 		0.0124
(0.107) 		0.0297
(0.181) 		0.0488
(0.237)
CBL 34 (9%) 333 1
(1.00) 		1
(1.00) 		0.624
(0.93) 		0.234
(0.543) 		0.322
(0.646) 		0.00443
(0.0608) 		0.0636
(0.271) 		0.00606
(0.0733) 		0.0225
(0.155) 		0.00075
(0.0207) 		0.704
(0.994) 		0.277
(0.601)
RAB28 6 (2%) 361 0.0307
(0.185) 		0.118
(0.379) 		0.446
(0.783) 		0.579
(0.891) 		0.0181
(0.135) 		0.0255
(0.166) 		0.00318
(0.0492) 		0.131
(0.4)
BRCA2 47 (13%) 320 0.138
(0.41) 		0.112
(0.367) 		0.0521
(0.245) 		0.187
(0.483) 		0.0532
(0.247) 		0.942
(1.00) 		0.0144
(0.117) 		0.00022
(0.00957) 		0.00366
(0.0539) 		0.00233
(0.0408) 		0.399
(0.731) 		0.131
(0.399)
IFIT2 7 (2%) 360 0.00678
(0.077) 		0.0376
(0.206) 		0.283
(0.608) 		0.71
(0.999) 		0.165
(0.447) 		0.018
(0.134) 		0.435
(0.77) 		0.0116
(0.102) 		0.218
(0.52) 		0.837
(1.00)
C14ORF102 17 (5%) 350 0.074
(0.295) 		0.208
(0.509) 		0.00704
(0.0785) 		0.808
(1.00) 		0.89
(1.00) 		0.778
(1.00) 		0.795
(1.00) 		0.0352
(0.198) 		0.0173
(0.131) 		0.0029
(0.0466) 		0.0961
(0.337) 		0.836
(1.00)
MSH2 33 (9%) 334 0.654
(0.953) 		0.812
(1.00) 		0.0296
(0.181) 		0.652
(0.951) 		0.405
(0.737) 		0.601
(0.91) 		0.00796
(0.0837) 		0.00227
(0.0404) 		0.0092
(0.0902) 		0.364
(0.694) 		0.12
(0.382) 		0.629
(0.933)
C6ORF170 18 (5%) 349 0.0291
(0.18) 		0.319
(0.646) 		0.17
(0.456) 		0.0384
(0.206) 		0.0382
(0.206) 		0.999
(1.00) 		0.205
(0.505) 		0.336
(0.662) 		0.614
(0.92) 		0.372
(0.701) 		0.0411
(0.213) 		0.625
(0.931)
STAB2 32 (9%) 335 0.00229
(0.0405) 		0.00731
(0.0802) 		0.00053
(0.0166) 		0.0972
(0.339) 		0.278
(0.602) 		0.456
(0.788) 		0.0985
(0.341) 		0.0242
(0.161) 		0.459
(0.791) 		0.429
(0.764) 		0.863
(1.00) 		0.872
(1.00)
PRKCI 18 (5%) 349 0.0296
(0.181) 		0.32
(0.646) 		0.0107
(0.0977) 		0.0267
(0.171) 		0.239
(0.55) 		0.536
(0.856) 		0.0107
(0.0973) 		0.334
(0.659) 		0.429
(0.763) 		0.4
(0.731)
MPO 12 (3%) 355 0.0552
(0.25) 		0.156
(0.439) 		0.114
(0.37) 		0.0109
(0.0984) 		0.01
(0.0942) 		0.328
(0.652) 		0.554
(0.871) 		0.0482
(0.235) 		0.329
(0.653) 		0.0759
(0.299) 		0.0674
(0.28) 		0.00169
(0.0342)
TRRAP 49 (13%) 318 0.0058
(0.0719) 		0.0425
(0.218) 		0.0121
(0.105) 		0.0817
(0.31) 		0.165
(0.447) 		0.23
(0.536) 		0.0908
(0.328) 		0.0199
(0.144) 		0.243
(0.556) 		0.475
(0.804) 		0.203
(0.502) 		0.802
(1.00)
GPR112 30 (8%) 337 0.0176
(0.132) 		0.00716
(0.0792) 		0.0783
(0.303) 		0.766
(1.00) 		0.0804
(0.308) 		0.962
(1.00) 		0.821
(1.00) 		0.0192
(0.14) 		0.953
(1.00) 		0.346
(0.672) 		0.0298
(0.182) 		0.095
(0.336)
MET 42 (11%) 325 0.159
(0.44) 		0.81
(1.00) 		0.283
(0.608) 		0.708
(0.998) 		0.894
(1.00) 		0.148
(0.429) 		0.00151
(0.0322) 		0.00014
(0.00717) 		3e-05
(0.00283) 		0.00502
(0.0663) 		0.918
(1.00) 		0.657
(0.955)
FLG2 28 (8%) 339 0.00858
(0.087) 		0.0213
(0.15) 		0.00252
(0.0427) 		0.0685
(0.282) 		0.635
(0.938) 		0.347
(0.674) 		0.142
(0.417) 		0.241
(0.553) 		0.403
(0.735) 		0.163
(0.445) 		0.00423
(0.0589) 		0.539
(0.858)
ATP13A5 22 (6%) 345 0.286
(0.608) 		0.45
(0.786) 		5e-05
(0.00393) 		0.00064
(0.0187) 		0.332
(0.657) 		0.488
(0.814) 		0.0107
(0.0973) 		0.0618
(0.267) 		0.024
(0.16) 		0.127
(0.393) 		0.244
(0.558) 		0.353
(0.682)
ITGAV 15 (4%) 352 0.0339
(0.195) 		0.186
(0.48) 		0.0757
(0.298) 		0.433
(0.769) 		0.0483
(0.235) 		0.0438
(0.222) 		0.019
(0.139) 		0.465
(0.795) 		0.498
(0.823) 		0.546
(0.862)
EEA1 13 (4%) 354 0.286
(0.608) 		0.452
(0.786) 		0.00014
(0.00717) 		0.0343
(0.196) 		0.82
(1.00) 		0.894
(1.00) 		0.02
(0.144) 		0.17
(0.456) 		0.0185
(0.137) 		0.185
(0.48)
SFRS18 12 (3%) 355 0.0984
(0.341) 		0.81
(1.00) 		0.00022
(0.00957) 		0.0244
(0.162) 		0.698
(0.989) 		0.845
(1.00) 		0.0439
(0.222) 		0.0913
(0.329) 		0.313
(0.638) 		0.00145
(0.0315) 		0.218
(0.52) 		0.355
(0.683)
INSM2 10 (3%) 357 0.00265
(0.044) 		0.0395
(0.208) 		0.0746
(0.296) 		0.369
(0.698) 		0.00026
(0.0106) 		0.00019
(0.0087) 		0.054
(0.248) 		0.0549
(0.249) 		0.0895
(0.325) 		0.858
(1.00)
RBL2 21 (6%) 346 0.00601
(0.0732) 		0.0137
(0.114) 		0.00257
(0.0431) 		0.0602
(0.263) 		0.689
(0.982) 		0.6
(0.91) 		0.0532
(0.247) 		0.00088
(0.0229) 		0.379
(0.71) 		0.111
(0.365) 		0.956
(1.00) 		0.639
(0.941)
DCAF6 15 (4%) 352 0.0274
(0.173) 		0.111
(0.365) 		0.00245
(0.042) 		0.00878
(0.088) 		0.0512
(0.243) 		0.291
(0.613) 		0.209
(0.509) 		0.0102
(0.0949) 		0.286
(0.608) 		0.0631
(0.27) 		0.151
(0.433) 		1
(1.00)
C9ORF84 20 (5%) 347 0.0304
(0.184) 		0.319
(0.645) 		0.00677
(0.077) 		0.274
(0.596) 		0.322
(0.646) 		0.699
(0.99) 		0.093
(0.333) 		0.0269
(0.171) 		0.0673
(0.28) 		0.104
(0.352) 		0.0271
(0.171) 		0.875
(1.00)
NRK 23 (6%) 344 0.00928
(0.0906) 		0.361
(0.69) 		0.0222
(0.154) 		0.514
(0.838) 		0.0384
(0.206) 		0.982
(1.00) 		0.27
(0.592) 		0.141
(0.416) 		0.279
(0.604) 		0.0458
(0.228) 		0.069
(0.283) 		0.543
(0.86)
UGT3A2 18 (5%) 349 0.33
(0.655) 		0.811
(1.00) 		0.00502
(0.0663) 		0.148
(0.428) 		0.0493
(0.238) 		0.56
(0.875) 		0.198
(0.495) 		0.0483
(0.236) 		0.00021
(0.00928) 		0.139
(0.411) 		0.528
(0.85) 		0.21
(0.511)
OR4E2 5 (1%) 362 0.0301
(0.183) 		0.0825
(0.312) 		0.304
(0.627) 		0.102
(0.349) 		0.0135
(0.113) 		0.0432
(0.22) 		0.0476
(0.234) 		0.291
(0.613)
FGFR1 17 (5%) 350 0.0379
(0.206) 		0.398
(0.73) 		0.0677
(0.28) 		0.226
(0.531) 		0.0155
(0.123) 		0.0441
(0.223) 		0.0325
(0.19) 		0.393
(0.724) 		0.657
(0.955) 		0.833
(1.00)
PLCH2 19 (5%) 348 0.527
(0.85) 		0.952
(1.00) 		0.645
(0.947) 		0.225
(0.528) 		0.0129
(0.109) 		0.00025
(0.0104) 		0.0287
(0.178) 		0.0394
(0.208) 		0.815
(1.00) 		0.791
(1.00)
PNPLA8 18 (5%) 349 0.0979
(0.34) 		0.0102
(0.0949) 		0.0102
(0.0949) 		0.197
(0.495) 		0.288
(0.609) 		0.499
(0.824) 		0.536
(0.856) 		0.00217
(0.0394) 		0.303
(0.625) 		0.25
(0.566) 		0.0317
(0.187) 		0.545
(0.861)
RNF111 14 (4%) 353 0.0299
(0.182) 		0.00262
(0.0436) 		0.0247
(0.163) 		0.779
(1.00) 		0.0636
(0.271) 		0.642
(0.944) 		0.947
(1.00) 		0.00114
(0.0271) 		0.409
(0.742) 		0.681
(0.977)
UPF3A 9 (2%) 358 0.0189
(0.139) 		0.396
(0.728) 		0.85
(1.00) 		0.359
(0.688) 		0.0864
(0.319) 		0.0221
(0.153) 		0.034
(0.195) 		0.00229
(0.0405)
KDM3B 32 (9%) 335 0.00394
(0.0561) 		0.0533
(0.247) 		0.0316
(0.187) 		0.169
(0.454) 		0.214
(0.515) 		0.321
(0.646) 		0.417
(0.751) 		0.0415
(0.215) 		0.376
(0.706) 		0.00982
(0.0933) 		1
(1.00) 		0.431
(0.766)
PCDH12 17 (5%) 350 0.0775
(0.302) 		0.0671
(0.28) 		0.00106
(0.0259) 		0.42
(0.754) 		0.344
(0.67) 		0.713
(1.00) 		0.25
(0.566) 		0.00629
(0.0744) 		0.0345
(0.196) 		0.0131
(0.11)
MRE11A 12 (3%) 355 0.00059
(0.0178) 		0.149
(0.43) 		0.155
(0.439) 		0.133
(0.404) 		0.00448
(0.0615) 		0.00575
(0.0716) 		0.0743
(0.295) 		0.0146
(0.119) 		0.129
(0.396) 		0.446
(0.782)
LMTK3 15 (4%) 352 0.0632
(0.27) 		0.159
(0.44) 		0.176
(0.466) 		0.452
(0.786) 		0.00154
(0.0324) 		0.00094
(0.0239) 		7e-05
(0.00484) 		0.002
(0.0377) 		0.0589
(0.259) 		0.312
(0.637)
MCCC1 17 (5%) 350 0.0268
(0.171) 		0.0869
(0.32) 		0.0372
(0.205) 		0.468
(0.796) 		0.178
(0.468) 		0.128
(0.394) 		0.117
(0.376) 		0.0003
(0.0117) 		0.304
(0.627) 		0.00414
(0.0581)
ST3GAL6 10 (3%) 357 0.0977
(0.34) 		0.0101
(0.0945) 		0.00212
(0.0388) 		0.38
(0.711) 		0.134
(0.405) 		0.808
(1.00) 		0.598
(0.908) 		0.00298
(0.0474) 		0.519
(0.84) 		0.0229
(0.156)
ZNF182 13 (4%) 354 0.0964
(0.338) 		0.811
(1.00) 		0.0245
(0.162) 		0.322
(0.646) 		0.29
(0.612) 		0.291
(0.613) 		0.0314
(0.187) 		0.03
(0.183) 		0.513
(0.837) 		0.00857
(0.087)
LNPEP 18 (5%) 349 0.0074
(0.0805) 		0.11
(0.364) 		0.00167
(0.0341) 		0.422
(0.756) 		1
(1.00) 		0.844
(1.00) 		0.058
(0.257) 		0.203
(0.503) 		0.433
(0.769) 		0.0452
(0.226) 		0.0123
(0.106) 		0.228
(0.534)
FOXN3 11 (3%) 356 0.285
(0.608) 		0.0385
(0.206) 		0.0116
(0.103) 		0.435
(0.77) 		0.172
(0.458) 		0.764
(1.00) 		0.332
(0.657) 		0.00669
(0.0765) 		0.41
(0.743) 		0.0262
(0.169)
NGEF 16 (4%) 351 0.313
(0.638) 		0.527
(0.849) 		0.0343
(0.196) 		0.774
(1.00) 		0.0633
(0.271) 		0.0166
(0.129) 		0.0197
(0.142) 		0.0135
(0.113) 		0.839
(1.00) 		0.462
(0.792)
HIVEP2 19 (5%) 348 0.00734
(0.0804) 		0.109
(0.363) 		0.00765
(0.0818) 		0.818
(1.00) 		0.0106
(0.0969) 		0.477
(0.805) 		0.987
(1.00) 		0.024
(0.16) 		0.953
(1.00) 		0.154
(0.438) 		0.327
(0.651) 		0.261
(0.58)
NCOA6 24 (7%) 343 0.0271
(0.172) 		0.016
(0.126) 		0.00683
(0.0772) 		0.183
(0.477) 		0.532
(0.853) 		0.949
(1.00) 		0.0725
(0.291) 		0.00636
(0.0746) 		0.0671
(0.28) 		0.0585
(0.258) 		0.204
(0.504) 		0.285
(0.608)
DDX59 11 (3%) 356 0.0114
(0.101) 		0.15
(0.432) 		0.0249
(0.164) 		0.577
(0.89) 		0.0132
(0.111) 		0.0453
(0.226) 		0.198
(0.496) 		0.166
(0.449)
PHF21A 11 (3%) 356 0.00943
(0.0913) 		0.00992
(0.0938) 		0.00308
(0.0482) 		0.511
(0.836) 		0.075
(0.297) 		0.235
(0.544) 		0.0842
(0.315) 		0.00391
(0.0559) 		0.103
(0.35) 		0.0745
(0.296)
BMPR1A 18 (5%) 349 0.03
(0.183) 		0.066
(0.278) 		0.0101
(0.0947) 		0.021
(0.148) 		0.205
(0.504) 		0.799
(1.00) 		0.666
(0.964) 		0.00151
(0.0322) 		0.135
(0.406) 		0.208
(0.509) 		0.717
(1.00) 		0.86
(1.00)
KIAA0319L 19 (5%) 348 0.0586
(0.258) 		0.112
(0.366) 		0.00168
(0.0342) 		0.0578
(0.256) 		0.305
(0.628) 		0.807
(1.00) 		0.164
(0.445) 		0.122
(0.384) 		0.0452
(0.226) 		0.0403
(0.211) 		0.0056
(0.0706) 		0.537
(0.857)
VAV3 24 (7%) 343 0.043
(0.22) 		0.319
(0.646) 		0.00715
(0.0792) 		0.26
(0.579) 		0.0151
(0.121) 		0.353
(0.682) 		0.0265
(0.17) 		0.0955
(0.336) 		0.233
(0.542) 		0.063
(0.27) 		0.497
(0.822) 		0.925
(1.00)
CTBP2 6 (2%) 361 0.0111
(0.0997) 		0.117
(0.378) 		1
(1.00) 		0.627
(0.932) 		0.00467
(0.0632) 		0.00368
(0.0541) 		0.0173
(0.131) 		0.12
(0.382)
DOCK5 26 (7%) 341 0.00048
(0.0156) 		0.00014
(0.00717) 		1e-05
(0.00134) 		0.0927
(0.333) 		0.204
(0.504) 		0.568
(0.882) 		0.183
(0.477) 		0.00012
(0.00654) 		0.0625
(0.269) 		0.487
(0.814) 		0.687
(0.98) 		0.242
(0.555)
DOCK1 24 (7%) 343 0.325
(0.649) 		1
(1.00) 		0.00211
(0.0388) 		0.748
(1.00) 		0.827
(1.00) 		0.342
(0.668) 		0.418
(0.751) 		0.0479
(0.235) 		0.0289
(0.179) 		0.00135
(0.0304) 		0.45
(0.786) 		0.887
(1.00)
ZNF721 15 (4%) 352 0.0281
(0.176) 		0.109
(0.363) 		0.00023
(0.00978) 		0.0198
(0.143) 		0.00747
(0.081) 		0.468
(0.797) 		0.248
(0.564) 		0.214
(0.515) 		0.404
(0.736) 		0.298
(0.62) 		0.152
(0.435) 		0.885
(1.00)
PAX6 14 (4%) 353 0.00893
(0.0888) 		0.00936
(0.0909) 		0.0239
(0.16) 		0.177
(0.467) 		0.122
(0.384) 		0.156
(0.439) 		0.0964
(0.338) 		0.0328
(0.191) 		0.438
(0.774) 		0.365
(0.694) 		0.776
(1.00) 		0.534
(0.855)
HCRTR2 7 (2%) 360 0.285
(0.608) 		0.451
(0.786) 		0.0638
(0.272) 		0.0368
(0.204) 		0.14
(0.414) 		0.0102
(0.0949) 		0.00715
(0.0792) 		0.117
(0.377) 		0.275
(0.598) 		0.00475
(0.0639)
SLC22A16 13 (4%) 354 0.00062
(0.0184) 		0.0381
(0.206) 		0.248
(0.564) 		0.263
(0.583) 		0.0104
(0.0957) 		0.00078
(0.0212) 		0.0578
(0.256) 		0.169
(0.453) 		0.152
(0.434) 		0.695
(0.987)
SCN3A 42 (11%) 325 0.00508
(0.0667) 		0.00706
(0.0786) 		0.00365
(0.0538) 		0.779
(1.00) 		0.748
(1.00) 		0.865
(1.00) 		0.283
(0.608) 		0.00593
(0.0727) 		0.0592
(0.26) 		0.378
(0.708) 		0.877
(1.00) 		0.762
(1.00)
USH2A 74 (20%) 293 0.0078
(0.0827) 		0.0112
(0.1) 		0.00018
(0.00839) 		0.0505
(0.241) 		0.243
(0.556) 		0.149
(0.43) 		0.0744
(0.296) 		0.00527
(0.0684) 		0.141
(0.416) 		0.151
(0.433) 		0.732
(1.00) 		0.139
(0.412)
RAD51AP2 16 (4%) 351 0.0746
(0.296) 		0.319
(0.646) 		0.00024
(0.0101) 		0.00855
(0.0869) 		0.0358
(0.2) 		0.0652
(0.276) 		0.0524
(0.245) 		0.0083
(0.0855) 		0.0662
(0.278) 		0.459
(0.791) 		0.778
(1.00) 		0.311
(0.636)
INSRR 26 (7%) 341 0.164
(0.446) 		0.086
(0.318) 		0.0259
(0.168) 		0.195
(0.494) 		0.0075
(0.081) 		0.153
(0.436) 		0.705
(0.995) 		0.0206
(0.147) 		0.0489
(0.237) 		0.0516
(0.244) 		0.144
(0.422) 		0.355
(0.683)
JAK3 24 (7%) 343 0.00933
(0.0909) 		0.01
(0.0943) 		0.0756
(0.298) 		0.868
(1.00) 		0.368
(0.697) 		0.2
(0.499) 		0.492
(0.817) 		0.00597
(0.073) 		0.00804
(0.0841) 		0.0655
(0.277) 		0.415
(0.749) 		0.836
(1.00)
OR2Y1 7 (2%) 360 0.126
(0.391) 		0.0513
(0.243) 		0.109
(0.363) 		0.468
(0.796) 		0.0131
(0.11) 		0.0105
(0.0965) 		0.0037
(0.0542) 		0.00377
(0.0547)
GNA14 10 (3%) 357 0.00137
(0.0305) 		0.00305
(0.0479) 		0.00851
(0.0866) 		0.0812
(0.309) 		0.851
(1.00) 		0.18
(0.471) 		0.339
(0.666) 		0.00337
(0.0512) 		0.357
(0.686) 		0.0552
(0.25)
CD55 7 (2%) 360 0.0543
(0.248) 		0.0373
(0.205) 		0.00735
(0.0804) 		0.461
(0.792) 		1
(1.00) 		0.449
(0.785) 		0.218
(0.52) 		0.024
(0.16) 		0.294
(0.616) 		0.031
(0.186)
NOD2 16 (4%) 351 0.00802
(0.084) 		0.481
(0.808) 		0.123
(0.385) 		0.11
(0.364) 		0.00259
(0.0433) 		6e-05
(0.00436) 		0.0176
(0.132) 		0.134
(0.405)
GPR126 16 (4%) 351 0.027
(0.171) 		0.11
(0.364) 		0.00026
(0.0106) 		0.0138
(0.114) 		0.784
(1.00) 		0.338
(0.664) 		0.0175
(0.132) 		0.0885
(0.322) 		0.328
(0.652) 		0.229
(0.535)
CBX3 6 (2%) 361 0.0109
(0.0984) 		0.0375
(0.206) 		0.14
(0.413) 		0.498
(0.823) 		0.0223
(0.155) 		0.0335
(0.193) 		0.0864
(0.319) 		0.0575
(0.256)
MCF2 28 (8%) 339 0.101
(0.345) 		0.0205
(0.146) 		0.00054
(0.0168) 		0.0466
(0.23) 		0.296
(0.617) 		0.876
(1.00) 		0.134
(0.405) 		0.0854
(0.317) 		0.0451
(0.226) 		0.164
(0.445) 		0.218
(0.52) 		0.835
(1.00)
MACC1 18 (5%) 349 0.00912
(0.0896) 		0.0345
(0.196) 		0.00418
(0.0584) 		0.213
(0.514) 		0.94
(1.00) 		0.519
(0.84) 		0.328
(0.653) 		0.00639
(0.0748) 		0.168
(0.452) 		0.145
(0.423) 		0.434
(0.769) 		0.907
(1.00)
PIK3C3 23 (6%) 344 0.0991
(0.342) 		0.00979
(0.0932) 		0.0157
(0.124) 		0.614
(0.92) 		0.0895
(0.325) 		0.546
(0.863) 		0.364
(0.693) 		0.00254
(0.0429) 		0.297
(0.619) 		0.0159
(0.125) 		0.129
(0.396) 		0.746
(1.00)
FAM189B 11 (3%) 356 0.0554
(0.25) 		0.0379
(0.206) 		0.00067
(0.0194) 		0.0689
(0.283) 		0.427
(0.762) 		0.407
(0.739) 		0.0507
(0.242) 		0.0031
(0.0484) 		0.0595
(0.261) 		0.00059
(0.0178) 		0.416
(0.75) 		0.835
(1.00)
PRKCD 13 (4%) 354 0.0545
(0.249) 		0.153
(0.437) 		5e-05
(0.00393) 		0.0539
(0.248) 		0.156
(0.439) 		0.379
(0.71) 		0.0323
(0.189) 		0.00384
(0.0554) 		0.018
(0.134) 		0.306
(0.629)
SNAPC1 7 (2%) 360 0.0517
(0.244) 		0.0101
(0.0945) 		0.0165
(0.128) 		0.515
(0.838) 		1
(1.00) 		0.703
(0.994) 		0.316
(0.641) 		0.00102
(0.0252) 		0.526
(0.848) 		0.00355
(0.0529)
CACHD1 21 (6%) 346 0.0021
(0.0388) 		0.0532
(0.247) 		0.0163
(0.127) 		0.32
(0.646) 		0.0473
(0.233) 		0.118
(0.379) 		0.988
(1.00) 		0.0393
(0.208) 		0.131
(0.399) 		0.377
(0.707) 		0.152
(0.434) 		0.699
(0.99)
CRTC1 13 (4%) 354 0.00744
(0.0808) 		0.094
(0.334) 		0.155
(0.439) 		0.143
(0.419) 		0.00369
(0.0542) 		0.00011
(0.00617) 		0.00104
(0.0255) 		0.732
(1.00) 		0.25
(0.565) 		0.885
(1.00)
USP29 18 (5%) 349 0.00873
(0.0877) 		0.0432
(0.22) 		8e-05
(0.00531) 		0.0937
(0.334) 		0.276
(0.599) 		0.754
(1.00) 		0.371
(0.7) 		0.0199
(0.143) 		0.0862
(0.318) 		0.709
(0.998) 		0.219
(0.521) 		0.388
(0.719)
ALK 35 (10%) 332 0.0177
(0.133) 		0.00719
(0.0795) 		0.263
(0.583) 		0.487
(0.814) 		0.0447
(0.225) 		0.598
(0.909) 		0.632
(0.936) 		0.0104
(0.0958) 		0.749
(1.00) 		0.174
(0.461) 		0.16
(0.441) 		0.576
(0.89)
SMC2 25 (7%) 342 0.21
(0.511) 		0.783
(1.00) 		0.849
(1.00) 		0.199
(0.497) 		0.00121
(0.0282) 		0.0013
(0.0296) 		0.0217
(0.152) 		0.00479
(0.0643) 		0.0847
(0.316) 		0.264
(0.584)
PSD3 10 (3%) 357 0.0372
(0.205) 		0.0357
(0.2) 		0.468
(0.796) 		0.0427
(0.219) 		0.122
(0.383) 		0.13
(0.397) 		0.152
(0.435) 		0.00848
(0.0864)
CBLN3 6 (2%) 361 0.134
(0.405) 		0.164
(0.445) 		0.0217
(0.152) 		0.906
(1.00) 		0.00482
(0.0645) 		0.0116
(0.103) 		0.005
(0.0661) 		0.236
(0.546)
MALT1 11 (3%) 356 0.0272
(0.172) 		0.0171
(0.13) 		0.219
(0.522) 		0.626
(0.932) 		0.665
(0.963) 		0.416
(0.75) 		0.433
(0.768) 		0.00791
(0.0835) 		0.177
(0.467) 		0.023
(0.157)
PIK3C2G 20 (5%) 347 0.158
(0.439) 		0.515
(0.838) 		0.00637
(0.0747) 		0.372
(0.701) 		0.0488
(0.237) 		0.0319
(0.188) 		0.499
(0.824) 		0.191
(0.487) 		0.32
(0.646) 		0.214
(0.515) 		1
(1.00) 		0.0379
(0.206)
SF1 14 (4%) 353 0.0555
(0.25) 		0.0386
(0.206) 		0.0566
(0.253) 		0.58
(0.891) 		0.0328
(0.191) 		0.277
(0.601) 		0.79
(1.00) 		0.00414
(0.0581) 		0.385
(0.716) 		0.0127
(0.108) 		0.898
(1.00) 		0.581
(0.892)
BRSK1 17 (5%) 350 0.00094
(0.0239) 		0.00164
(0.0337) 		0.241
(0.554) 		0.194
(0.492) 		0.723
(1.00) 		0.358
(0.686) 		0.236
(0.546) 		0.00053
(0.0166) 		0.214
(0.516) 		4e-05
(0.00342) 		0.0948
(0.335) 		0.951
(1.00)
USP44 16 (4%) 351 0.00534
(0.0687) 		0.0172
(0.131) 		0.0154
(0.122) 		0.398
(0.73) 		0.678
(0.975) 		0.687
(0.98) 		0.148
(0.429) 		0.0839
(0.315) 		0.316
(0.641) 		0.0106
(0.0969) 		0.534
(0.855) 		0.1
(0.345)
PTPRR 10 (3%) 357 0.00833
(0.0857) 		0.0378
(0.206) 		0.171
(0.458) 		0.271
(0.594) 		0.0142
(0.116) 		0.0011
(0.0264) 		0.149
(0.431) 		0.0998
(0.343)
STK11 31 (8%) 336 0.802
(1.00) 		0.608
(0.916) 		0.47
(0.798) 		0.787
(1.00) 		0.00023
(0.00978) 		1e-05
(0.00134) 		2e-05
(0.00216) 		0.0043
(0.0595) 		0.28
(0.605) 		0.101
(0.345)
RNF20 18 (5%) 349 0.224
(0.527) 		0.856
(1.00) 		0.00253
(0.0429) 		0.00589
(0.0725) 		0.0314
(0.187) 		0.771
(1.00) 		0.0187
(0.138) 		0.0982
(0.341) 		0.0852
(0.317) 		0.304
(0.627) 		0.179
(0.47) 		0.983
(1.00)
IVD 5 (1%) 362 0.0203
(0.145) 		0.0368
(0.204) 		0.138
(0.41) 		0.215
(0.516) 		0.0772
(0.301) 		0.0199
(0.143) 		0.0499
(0.24) 		0.681
(0.977)
CTCF 17 (5%) 350 0.0508
(0.242) 		0.359
(0.687) 		0.00443
(0.0608) 		0.0972
(0.339) 		0.178
(0.468) 		0.419
(0.753) 		0.0406
(0.211) 		0.00993
(0.0939) 		0.0092
(0.0902) 		0.178
(0.469)
ARID5A 8 (2%) 359 0.0377
(0.206) 		0.51
(0.836) 		0.706
(0.996) 		0.579
(0.891) 		0.194
(0.492) 		0.0136
(0.113) 		0.0127
(0.108) 		0.313
(0.638) 		0.955
(1.00) 		0.0412
(0.214)
CYP4F11 6 (2%) 361 0.0109
(0.0983) 		0.272
(0.594) 		0.0435
(0.221) 		0.826
(1.00) 		0.0946
(0.335) 		0.00207
(0.0386) 		0.00153
(0.0324) 		0.298
(0.62) 		0.415
(0.749) 		0.641
(0.943)
ATP12A 26 (7%) 341 0.2
(0.499) 		0.0532
(0.247) 		0.00592
(0.0727) 		0.805
(1.00) 		0.353
(0.681) 		0.73
(1.00) 		0.764
(1.00) 		0.00128
(0.0293) 		0.042
(0.216) 		0.0145
(0.118) 		0.56
(0.875) 		0.391
(0.721)
ZFYVE16 17 (5%) 350 0.324
(0.647) 		0.32
(0.646) 		7e-05
(0.00484) 		0.0956
(0.336) 		0.205
(0.505) 		0.552
(0.87) 		0.0135
(0.113) 		0.0364
(0.203) 		0.125
(0.39) 		0.0117
(0.103)
PAK4 6 (2%) 361 0.135
(0.406) 		0.513
(0.837) 		0.284
(0.608) 		0.274
(0.597) 		0.00496
(0.0658) 		0.0053
(0.0685) 		0.00382
(0.0552) 		0.00143
(0.0313)
LIMCH1 13 (4%) 354 0.092
(0.331) 		0.0169
(0.13) 		0.00297
(0.0473) 		0.0818
(0.311) 		0.00353
(0.0528) 		0.0488
(0.237) 		0.217
(0.518) 		0.612
(0.919) 		0.139
(0.412) 		0.121
(0.383)
URGCP 15 (4%) 352 0.0281
(0.176) 		0.0495
(0.238) 		0.937
(1.00) 		0.19
(0.485) 		0.0476
(0.234) 		0.106
(0.357) 		0.0435
(0.221) 		0.55
(0.867) 		0.365
(0.695) 		0.475
(0.803)
RGS3 15 (4%) 352 0.0301
(0.183) 		0.00238
(0.0413) 		0.0019
(0.0366) 		0.607
(0.916) 		0.446
(0.782) 		0.153
(0.437) 		0.388
(0.718) 		0.00052
(0.0165) 		0.221
(0.524) 		0.302
(0.625) 		0.296
(0.617) 		0.858
(1.00)
HEPH 15 (4%) 352 0.0281
(0.176) 		0.158
(0.439) 		0.278
(0.602) 		0.347
(0.674) 		0.00721
(0.0796) 		0.00924
(0.0904) 		0.0126
(0.108) 		0.0794
(0.306)
MAP2 36 (10%) 331 0.00043
(0.0146) 		0.0435
(0.221) 		3e-05
(0.00283) 		0.195
(0.494) 		0.232
(0.539) 		0.519
(0.84) 		0.0932
(0.333) 		0.00767
(0.0818) 		0.487
(0.814) 		0.86
(1.00) 		0.26
(0.579) 		0.384
(0.715)
UPF2 16 (4%) 351 0.0743
(0.296) 		0.0671
(0.28) 		0.0003
(0.0117) 		0.0384
(0.206) 		0.446
(0.782) 		0.347
(0.673) 		0.0415
(0.215) 		0.00795
(0.0836) 		0.0584
(0.258) 		0.253
(0.569)
STAT5B 12 (3%) 355 0.0743
(0.295) 		0.0677
(0.28) 		0.00305
(0.0479) 		0.32
(0.646) 		0.0154
(0.122) 		0.412
(0.745) 		0.045
(0.226) 		0.0273
(0.172) 		0.1
(0.344) 		0.238
(0.55) 		0.944
(1.00) 		0.977
(1.00)
ZKSCAN1 7 (2%) 360 0.0973
(0.34) 		0.00975
(0.0931) 		0.00702
(0.0785) 		0.11
(0.364) 		0.109
(0.362) 		0.216
(0.518) 		0.263
(0.583) 		0.00185
(0.036) 		0.108
(0.362) 		0.00169
(0.0342)
THRAP3 11 (3%) 356 0.0979
(0.34) 		0.0102
(0.0949) 		0.00841
(0.0861) 		0.511
(0.836) 		0.00188
(0.0364) 		0.669
(0.966) 		0.0834
(0.313) 		0.00424
(0.0589) 		0.91
(1.00) 		0.142
(0.418)
RUNX2 8 (2%) 359 0.0989
(0.341) 		0.0516
(0.243) 		0.00229
(0.0405) 		0.0822
(0.311) 		0.703
(0.994) 		0.582
(0.893) 		0.0262
(0.169) 		0.00739
(0.0805) 		0.232
(0.54) 		0.0405
(0.211) 		0.22
(0.523) 		0.39
(0.721)
CTCFL 15 (4%) 352 0.00834
(0.0857) 		0.00674
(0.0768) 		0.00334
(0.051) 		0.323
(0.647) 		0.151
(0.433) 		0.152
(0.434) 		0.571
(0.885) 		0.0232
(0.157) 		0.768
(1.00) 		0.296
(0.617) 		1
(1.00) 		0.721
(1.00)
MAP2K4 30 (8%) 337 0.047
(0.232) 		0.368
(0.698) 		0.019
(0.139) 		0.0817
(0.31) 		0.368
(0.697) 		0.0615
(0.266) 		0.0165
(0.128) 		0.0862
(0.318) 		0.0296
(0.181) 		0.0526
(0.245) 		0.468
(0.796) 		0.764
(1.00)
SPATA16 12 (3%) 355 0.0431
(0.22) 		0.0336
(0.193) 		0.0406
(0.211) 		0.443
(0.78) 		0.156
(0.439) 		0.976
(1.00) 		0.713
(1.00) 		0.0263
(0.169) 		0.366
(0.695) 		0.0677
(0.28) 		0.22
(0.523) 		0.145
(0.423)
ABCD4 10 (3%) 357 0.0979
(0.34) 		0.0102
(0.0949) 		0.0004
(0.0139) 		0.116
(0.374) 		0.556
(0.871) 		0.646
(0.947) 		0.14
(0.414) 		0.00094
(0.0239) 		0.0824
(0.312) 		0.005
(0.0661)
JMJD1C 24 (7%) 343 0.0252
(0.165) 		0.609
(0.917) 		0.00044
(0.0147) 		0.0162
(0.127) 		0.0316
(0.187) 		0.295
(0.617) 		0.0861
(0.318) 		0.623
(0.93) 		0.606
(0.915) 		0.762
(1.00) 		0.382
(0.714) 		0.196
(0.495)
BTNL3 7 (2%) 360 0.0075
(0.081) 		0.139
(0.412) 		0.109
(0.363) 		0.497
(0.823) 		0.00116
(0.0273) 		0.00092
(0.0236) 		0.00147
(0.0318) 		0.0545
(0.249)
HEATR4 14 (4%) 353 0.21
(0.51) 		0.154
(0.438) 		0.00303
(0.0478) 		0.0145
(0.118) 		0.0265
(0.17) 		0.927
(1.00) 		0.164
(0.446) 		0.034
(0.195) 		0.441
(0.778) 		0.308
(0.632) 		0.295
(0.617) 		0.4
(0.731)
UGT2A1 10 (3%) 357 0.171
(0.457) 		0.21
(0.51) 		0.00034
(0.0125) 		0.513
(0.837) 		0.618
(0.924) 		0.0369
(0.204) 		0.0514
(0.243) 		0.0123
(0.106) 		0.666
(0.964) 		0.00131
(0.0297)
SBSN 10 (3%) 357 0.00915
(0.0898) 		0.0103
(0.0954) 		0.0231
(0.157) 		0.875
(1.00) 		0.597
(0.907) 		0.891
(1.00) 		0.601
(0.91) 		0.043
(0.22) 		0.478
(0.806) 		0.535
(0.856) 		0.507
(0.833) 		1
(1.00)
WNK4 11 (3%) 356 0.289
(0.61) 		0.0383
(0.206) 		0.00013
(0.00687) 		0.0766
(0.3) 		0.172
(0.459) 		0.242
(0.555) 		0.0349
(0.197) 		0.00127
(0.0292) 		0.351
(0.679) 		0.0558
(0.251)
DHX36 12 (3%) 355 0.165
(0.447) 		0.0457
(0.227) 		0.0284
(0.177) 		0.316
(0.641) 		0.0523
(0.245) 		0.0047
(0.0636) 		0.181
(0.474) 		0.306
(0.63) 		0.0289
(0.179) 		0.699
(0.99)
SLC9A9 21 (6%) 346 0.00067
(0.0194) 		0.00679
(0.077) 		0.0484
(0.236) 		0.926
(1.00) 		0.897
(1.00) 		0.228
(0.533) 		0.574
(0.888) 		0.00183
(0.0357) 		0.38
(0.712) 		0.137
(0.409)
HSPBAP1 7 (2%) 360 0.461
(0.792) 		0.378
(0.709) 		0.768
(1.00) 		0.883
(1.00) 		0.133
(0.404) 		0.017
(0.13) 		0.0175
(0.132) 		0.00012
(0.00654) 		0.0368
(0.204) 		0.184
(0.478)
ICAM5 10 (3%) 357 0.0216
(0.152) 		0.0484
(0.236) 		0.513
(0.837) 		0.962
(1.00) 		0.00014
(0.00717) 		0.00696
(0.078) 		0.0925
(0.332) 		0.163
(0.445)
RXRA 8 (2%) 359 0.00625
(0.0742) 		0.0828
(0.312) 		0.148
(0.429) 		0.448
(0.785) 		0.00234
(0.0409) 		0.0023
(0.0405) 		0.19
(0.485) 		0.0181
(0.134)
DOCK8 20 (5%) 347 0.677
(0.974) 		0.856
(1.00) 		0.0134
(0.113) 		0.161
(0.443) 		0.59
(0.901) 		0.21
(0.51) 		0.216
(0.517) 		0.0481
(0.235) 		0.0403
(0.211) 		0.00846
(0.0863) 		0.111
(0.366) 		0.761
(1.00)
BLM 17 (5%) 350 0.14
(0.414) 		0.0341
(0.196) 		0.0001
(0.00587) 		0.61
(0.918) 		0.12
(0.382) 		0.514
(0.837) 		0.16
(0.441) 		0.0239
(0.16) 		0.253
(0.568) 		0.0444
(0.224) 		0.943
(1.00) 		0.0846
(0.316)
FANCD2 15 (4%) 352 0.0522
(0.245) 		0.0431
(0.22) 		0.0058
(0.0719) 		0.228
(0.533) 		0.327
(0.652) 		0.54
(0.858) 		0.386
(0.717) 		0.00081
(0.0217) 		0.657
(0.955) 		0.0307
(0.185) 		0.48
(0.807) 		0.185
(0.479)
VPRBP 12 (3%) 355 1
(1.00) 		0.61
(0.918) 		0.0152
(0.122) 		0.128
(0.394) 		0.291
(0.613) 		0.32
(0.646) 		0.171
(0.457) 		0.0502
(0.241) 		0.0481
(0.235) 		0.00217
(0.0394) 		0.00058
(0.0176) 		0.228
(0.534)
PEBP4 7 (2%) 360 0.383
(0.715) 		0.627
(0.932) 		0.442
(0.779) 		0.509
(0.835) 		0.0398
(0.209) 		0.00948
(0.0916) 		0.0427
(0.219) 		0.00902
(0.0892)
TJP1 18 (5%) 349 0.158
(0.439) 		0.0102
(0.0949) 		0.0494
(0.238) 		0.477
(0.805) 		0.678
(0.975) 		0.255
(0.572) 		0.463
(0.793) 		0.0001
(0.00587) 		0.512
(0.837) 		0.0164
(0.128) 		0.417
(0.751) 		0.64
(0.942)
ZNF197 9 (2%) 358 0.00093
(0.0238) 		0.138
(0.41) 		0.874
(1.00) 		0.685
(0.979) 		0.0018
(0.0354) 		0.0127
(0.108) 		0.584
(0.894) 		0.00198
(0.0376)
ESCO1 13 (4%) 354 0.00169
(0.0342) 		0.024
(0.16) 		0.00285
(0.0461) 		0.322
(0.646) 		0.501
(0.826) 		0.635
(0.938) 		0.294
(0.616) 		0.106
(0.358) 		0.266
(0.586) 		0.19
(0.487) 		0.0259
(0.168) 		0.465
(0.795)
PCDHGA4 18 (5%) 349 0.157
(0.439) 		0.0095
(0.0917) 		0.00111
(0.0266) 		0.0755
(0.298) 		0.2
(0.498) 		0.0945
(0.335) 		0.14
(0.414) 		6e-05
(0.00436) 		0.39
(0.72) 		0.00553
(0.0702) 		0.0594
(0.26) 		0.94
(1.00)
DDX11 7 (2%) 360 0.00753
(0.0813) 		0.378
(0.709) 		0.894
(1.00) 		0.685
(0.979) 		0.0084
(0.086) 		0.0103
(0.0954) 		0.0284
(0.177) 		0.642
(0.944)
ACTA1 12 (3%) 355 0.00774
(0.0823) 		0.039
(0.207) 		0.158
(0.439) 		0.857
(1.00) 		0.222
(0.525) 		0.00018
(0.00839) 		0.0475
(0.234) 		0.577
(0.89) 		0.463
(0.793) 		0.675
(0.973)
SEC14L1 10 (3%) 357 0.0882
(0.322) 		0.396
(0.728) 		0.029
(0.179) 		0.0999
(0.343) 		0.37
(0.699) 		0.00312
(0.0486) 		0.0256
(0.166) 		0.0156
(0.124)
FBLIM1 5 (1%) 362 0.0624
(0.269) 		0.0369
(0.204) 		1
(1.00) 		0.382
(0.714) 		0.0131
(0.111) 		0.045
(0.225) 		0.0473
(0.233) 		0.122
(0.384)
PNPLA5 10 (3%) 357 0.00223
(0.0399) 		0.0677
(0.28) 		1
(1.00) 		0.631
(0.935) 		0.0228
(0.156) 		0.00113
(0.0269) 		0.0401
(0.21) 		0.36
(0.688)
MST1R 14 (4%) 353 0.00928
(0.0906) 		0.0786
(0.304) 		0.6
(0.909) 		0.405
(0.737) 		0.0023
(0.0405) 		1e-05
(0.00134) 		0.00188
(0.0364) 		0.0597
(0.261) 		0.0876
(0.32) 		0.432
(0.768)
SLC38A9 11 (3%) 356 0.285
(0.608) 		0.156
(0.439) 		0.00042
(0.0144) 		0.0348
(0.197) 		0.0678
(0.28) 		0.56
(0.875) 		0.0356
(0.2) 		0.0325
(0.19) 		0.241
(0.554) 		0.143
(0.419)
VPS72 8 (2%) 359 0.0063
(0.0744) 		0.137
(0.409) 		0.904
(1.00) 		0.622
(0.929) 		0.02
(0.144) 		0.00172
(0.0345) 		0.0114
(0.101) 		0.198
(0.495)
FGD1 16 (4%) 351 0.898
(1.00) 		0.601
(0.91) 		0.0351
(0.198) 		0.094
(0.334) 		0.251
(0.567) 		0.81
(1.00) 		0.133
(0.403) 		0.00068
(0.0195) 		0.00906
(0.0893) 		0.0834
(0.313) 		0.0128
(0.109) 		0.354
(0.682)
BRCA1 26 (7%) 341 0.00803
(0.0841) 		0.109
(0.363) 		0.0564
(0.252) 		0.529
(0.851) 		0.479
(0.807) 		0.996
(1.00) 		0.534
(0.855) 		0.0426
(0.219) 		0.185
(0.48) 		0.0005
(0.016) 		0.0344
(0.196) 		0.366
(0.696)
AOX1 12 (3%) 355 0.0307
(0.185) 		0.00258
(0.0432) 		0.0156
(0.123) 		1
(1.00) 		0.189
(0.485) 		0.963
(1.00) 		0.862
(1.00) 		0.00077
(0.021) 		0.563
(0.877) 		0.126
(0.391) 		0.127
(0.392) 		0.351
(0.679)
CDHR5 11 (3%) 356 0.407
(0.739) 		0.024
(0.16) 		0.00246
(0.0421) 		0.0817
(0.31) 		0.29
(0.612) 		0.27
(0.592) 		0.027
(0.171) 		0.0214
(0.15) 		0.258
(0.576) 		0.136
(0.408)
IGSF1 21 (6%) 346 0.129
(0.396) 		0.192
(0.49) 		0.0039
(0.0558) 		0.0803
(0.308) 		0.0482
(0.235) 		0.439
(0.776) 		0.206
(0.507) 		0.00962
(0.0923) 		0.0485
(0.236) 		0.835
(1.00) 		0.295
(0.617) 		0.857
(1.00)
GON4L 20 (5%) 347 0.00768
(0.0818) 		0.111
(0.365) 		4e-05
(0.00342) 		0.0252
(0.165) 		0.371
(0.7) 		0.655
(0.953) 		0.0526
(0.245) 		0.0174
(0.131) 		0.559
(0.874) 		0.626
(0.932) 		0.119
(0.38) 		0.0952
(0.336)
CENPJ 21 (6%) 346 0.14
(0.413) 		0.566
(0.88) 		1e-05
(0.00134) 		0.148
(0.429) 		0.0309
(0.185) 		0.108
(0.362) 		0.0207
(0.147) 		0.0878
(0.321) 		0.0467
(0.231) 		0.644
(0.945) 		0.257
(0.575) 		0.428
(0.763)
TRIM33 15 (4%) 352 0.158
(0.439) 		0.197
(0.495) 		0.0648
(0.274) 		0.503
(0.828) 		0.0564
(0.252) 		0.111
(0.365) 		0.0211
(0.149) 		0.00171
(0.0344) 		0.0188
(0.139) 		0.00169
(0.0342)
GTDC1 9 (2%) 358 0.285
(0.608) 		0.0382
(0.206) 		0.0367
(0.204) 		0.515
(0.838) 		0.339
(0.666) 		0.493
(0.817) 		0.593
(0.905) 		0.0113
(0.101) 		0.188
(0.484) 		0.015
(0.121)
MICAL1 9 (2%) 358 0.00068
(0.0195) 		0.0825
(0.312) 		0.301
(0.624) 		0.412
(0.745) 		0.0508
(0.242) 		0.00011
(0.00617) 		0.0409
(0.213) 		0.00475
(0.0639) 		0.153
(0.436) 		0.175
(0.464)
WDR17 23 (6%) 344 0.0247
(0.163) 		0.16
(0.441) 		0.00073
(0.0203) 		0.282
(0.607) 		0.029
(0.179) 		0.753
(1.00) 		0.0235
(0.159) 		0.106
(0.356) 		0.689
(0.982) 		0.162
(0.444)
EPRS 19 (5%) 348 0.00899
(0.089) 		0.0448
(0.225) 		0.00907
(0.0893) 		0.808
(1.00) 		0.688
(0.981) 		0.466
(0.795) 		0.94
(1.00) 		0.043
(0.22) 		0.954
(1.00) 		0.874
(1.00)
CELSR1 22 (6%) 345 0.341
(0.667) 		0.321
(0.646) 		0.00732
(0.0803) 		0.104
(0.352) 		0.333
(0.658) 		0.56
(0.875) 		0.0811
(0.309) 		0.00022
(0.00957) 		0.00162
(0.0335) 		0.00561
(0.0707) 		0.326
(0.65) 		0.0582
(0.257)
KIF13A 21 (6%) 346 0.245
(0.56) 		0.766
(1.00) 		0.00403
(0.057) 		0.0793
(0.306) 		0.212
(0.513) 		0.731
(1.00) 		0.00872
(0.0877) 		0.00221
(0.0399) 		0.0297
(0.181) 		0.0503
(0.241) 		0.326
(0.65) 		0.363
(0.692)
SLIT3 25 (7%) 342 0.693
(0.986) 		0.0211
(0.149) 		6e-05
(0.00436) 		0.502
(0.827) 		0.782
(1.00) 		0.498
(0.823) 		0.0348
(0.197) 		0.0696
(0.285) 		0.0986
(0.341) 		0.00139
(0.0307) 		0.103
(0.349) 		0.32
(0.646)
GLUD2 20 (5%) 347 0.0977
(0.34) 		0.322
(0.646) 		0.00296
(0.0473) 		0.187
(0.482) 		0.524
(0.846) 		0.664
(0.962) 		0.0197
(0.143) 		0.00695
(0.078) 		0.0896
(0.325) 		0.0211
(0.149) 		0.0964
(0.338) 		0.0717
(0.289)
RTTN 17 (5%) 350 0.285
(0.608) 		0.453
(0.786) 		2e-05
(0.00216) 		0.0108
(0.0982) 		0.892
(1.00) 		0.805
(1.00) 		0.034
(0.195) 		0.0454
(0.227) 		0.229
(0.535) 		0.623
(0.93) 		0.154
(0.438) 		0.387
(0.718)
APAF1 18 (5%) 349 0.0269
(0.171) 		0.0168
(0.129) 		0.0217
(0.152) 		0.157
(0.439) 		0.648
(0.95) 		0.703
(0.993) 		0.63
(0.934) 		0.0374
(0.205) 		0.474
(0.802) 		0.735
(1.00)
MAK 9 (2%) 358 0.00072
(0.0202) 		0.0303
(0.184) 		0.422
(0.756) 		0.947
(1.00) 		0.139
(0.412) 		0.0197
(0.143) 		0.189
(0.484) 		0.0225
(0.155)
MTOR 34 (9%) 333 0.0151
(0.121) 		0.195
(0.494) 		0.00678
(0.077) 		0.258
(0.576) 		0.574
(0.888) 		0.524
(0.846) 		0.272
(0.595) 		0.00173
(0.0345) 		0.121
(0.383) 		0.0603
(0.263) 		0.00174
(0.0346) 		0.547
(0.863)
FLG 64 (17%) 303 0.00065
(0.0189) 		0.0247
(0.163) 		0.001
(0.025) 		0.487
(0.814) 		0.174
(0.462) 		0.42
(0.754) 		0.518
(0.84) 		0.002
(0.0377) 		0.478
(0.805) 		0.171
(0.457) 		0.103
(0.35) 		0.902
(1.00)
HIF1A 11 (3%) 356 0.0552
(0.25) 		0.0388
(0.207) 		0.00124
(0.0287) 		0.0113
(0.101) 		0.158
(0.439) 		0.731
(1.00) 		0.162
(0.444) 		0.0093
(0.0907) 		0.177
(0.466) 		0.316
(0.642) 		0.0926
(0.332) 		0.544
(0.86)
CCDC144A 9 (2%) 358 0.282
(0.608) 		0.0388
(0.207) 		0.0193
(0.14) 		0.164
(0.446) 		0.148
(0.429) 		0.164
(0.446) 		0.593
(0.905) 		0.0287
(0.178) 		0.53
(0.852) 		0.0135
(0.113)
G3BP1 11 (3%) 356 0.075
(0.297) 		0.00252
(0.0427) 		0.00016
(0.00786) 		0.163
(0.444) 		0.0668
(0.279) 		0.651
(0.951) 		0.0848
(0.316) 		0.00044
(0.0147) 		0.174
(0.462) 		0.00079
(0.0214)
KCNQ1 8 (2%) 359 0.0391
(0.207) 		0.137
(0.409) 		0.0142
(0.117) 		0.249
(0.565) 		0.137
(0.409) 		0.0141
(0.116) 		0.00287
(0.0463) 		0.34
(0.666)
ACVR1B 26 (7%) 341 0.191
(0.487) 		0.163
(0.444) 		0.00175
(0.0347) 		0.185
(0.479) 		0.133
(0.404) 		0.49
(0.815) 		0.34
(0.667) 		0.0143
(0.117) 		0.271
(0.594) 		0.00801
(0.084) 		0.277
(0.601) 		0.085
(0.316)
CRIPAK 18 (5%) 349 0.243
(0.556) 		0.0116
(0.102) 		0.774
(1.00) 		0.21
(0.511) 		0.00102
(0.0252) 		0.00054
(0.0168) 		0.111
(0.365) 		0.184
(0.478) 		0.553
(0.87) 		0.707
(0.997)
STARD3NL 13 (4%) 354 0.0335
(0.193) 		0.0946
(0.335) 		0.921
(1.00) 		0.0949
(0.336) 		0.0943
(0.335) 		0.0196
(0.142) 		0.0194
(0.141) 		0.306
(0.63) 		0.717
(1.00) 		0.585
(0.896)
ASXL1 40 (11%) 327 0.07
(0.286) 		0.462
(0.793) 		0.0123
(0.107) 		0.516
(0.839) 		0.165
(0.448) 		0.512
(0.837) 		0.0417
(0.216) 		0.0282
(0.176) 		0.147
(0.426) 		0.312
(0.637) 		0.547
(0.864) 		0.427
(0.762)
IDH1 18 (5%) 349 0.0535
(0.247) 		0.0384
(0.206) 		0.0583
(0.257) 		0.839
(1.00) 		0.816
(1.00) 		0.151
(0.433) 		0.0315
(0.187) 		0.00424
(0.0589) 		0.247
(0.563) 		0.108
(0.362) 		0.559
(0.874) 		0.633
(0.936)
RPTN 13 (4%) 354 0.439
(0.776) 		0.634
(0.937) 		0.454
(0.787) 		0.561
(0.875) 		0.00481
(0.0644) 		0.00166
(0.0339) 		0.00053
(0.0166) 		0.0573
(0.255) 		0.123
(0.385) 		0.652
(0.951)
ECT2 18 (5%) 349 0.0301
(0.183) 		0.0674
(0.28) 		0.0496
(0.239) 		0.822
(1.00) 		0.0821
(0.311) 		0.795
(1.00) 		0.445
(0.782) 		0.00201
(0.0378) 		0.121
(0.383) 		0.0579
(0.256) 		0.649
(0.95) 		0.959
(1.00)
GMPS 17 (5%) 350 0.0278
(0.174) 		0.563
(0.877) 		0.00578
(0.0718) 		0.32
(0.646) 		0.00653
(0.0757) 		0.715
(1.00) 		0.823
(1.00) 		0.662
(0.96) 		0.59
(0.902) 		0.268
(0.589) 		0.414
(0.748) 		0.314
(0.639)
NLRC4 24 (7%) 343 0.0984
(0.341) 		0.199
(0.497) 		0.0795
(0.306) 		0.201
(0.5) 		0.514
(0.837) 		0.413
(0.747) 		0.0899
(0.325) 		0.0148
(0.12) 		0.00372
(0.0544) 		0.00257
(0.0431) 		0.956
(1.00) 		0.871
(1.00)
FKBP9 17 (5%) 350 0.158
(0.439) 		0.197
(0.495) 		4e-05
(0.00342) 		0.299
(0.621) 		0.0631
(0.27) 		0.122
(0.385) 		0.321
(0.646) 		0.0309
(0.185) 		0.0107
(0.0974) 		0.196
(0.495) 		0.281
(0.607) 		0.126
(0.391)
RSPH3 10 (3%) 357 0.119
(0.38) 		0.128
(0.394) 		0.115
(0.373) 		0.342
(0.668) 		0.251
(0.567) 		0.0157
(0.124) 		0.0888
(0.323) 		0.0136
(0.113) 		0.0167
(0.129) 		0.0528
(0.246)
PTK2 21 (6%) 346 0.156
(0.439) 		0.198
(0.495) 		0.00063
(0.0185) 		0.0593
(0.26) 		0.118
(0.378) 		0.271
(0.593) 		0.00756
(0.0814) 		0.00528
(0.0684) 		0.134
(0.405) 		0.486
(0.813) 		0.331
(0.656) 		0.677
(0.974)
MLLT6 16 (4%) 351 0.143
(0.419) 		0.452
(0.786) 		0.0177
(0.133) 		0.633
(0.936) 		0.0845
(0.315) 		0.186
(0.481) 		0.454
(0.786) 		0.019
(0.139) 		0.0286
(0.178) 		0.209
(0.51) 		0.353
(0.682) 		0.159
(0.44)
ZFX 13 (4%) 354 0.0307
(0.185) 		0.0675
(0.28) 		0.0335
(0.193) 		0.356
(0.685) 		0.658
(0.956) 		0.968
(1.00) 		0.6
(0.909) 		0.0162
(0.127) 		0.146
(0.424) 		0.0672
(0.28) 		0.577
(0.89) 		0.49
(0.815)
SLC4A10 27 (7%) 340 0.555
(0.871) 		0.584
(0.894) 		1
(1.00) 		0.524
(0.846) 		0.0156
(0.124) 		0.0201
(0.144) 		0.0507
(0.242) 		0.269
(0.59) 		0.0215
(0.151) 		0.845
(1.00)
FBLN5 8 (2%) 359 0.444
(0.781) 		1
(1.00) 		0.343
(0.669) 		0.306
(0.629) 		0.042
(0.216) 		0.0437
(0.222) 		0.155
(0.438) 		0.00302
(0.0477)
ZNF486 12 (3%) 355 0.0698
(0.285) 		0.00271
(0.0445) 		1
(1.00) 		0.44
(0.776) 		0.302
(0.625) 		0.00116
(0.0273) 		0.57
(0.885) 		0.00675
(0.0769)
TUBA4A 9 (2%) 358 0.0189
(0.139) 		0.228
(0.533) 		0.373
(0.703) 		0.655
(0.954) 		0.231
(0.537) 		0.00388
(0.0556) 		0.0333
(0.192) 		0.772
(1.00) 		0.128
(0.395) 		0.49
(0.815)
FRMPD4 30 (8%) 337 0.482
(0.809) 		0.807
(1.00) 		0.47
(0.798) 		0.24
(0.553) 		0.0217
(0.152) 		0.00052
(0.0165) 		0.0118
(0.103) 		0.286
(0.608) 		0.338
(0.664) 		0.951
(1.00)
PAQR5 8 (2%) 359 0.883
(1.00) 		0.599
(0.909) 		0.683
(0.978) 		0.675
(0.973) 		0.0588
(0.259) 		0.0425
(0.219) 		0.0145
(0.118) 		0.0465
(0.23)
KDM5B 23 (6%) 344 0.00843
(0.0861) 		0.0447
(0.225) 		0.00087
(0.0228) 		0.13
(0.397) 		0.337
(0.663) 		0.343
(0.67) 		0.936
(1.00) 		0.0604
(0.263) 		0.603
(0.912) 		0.284
(0.608) 		0.221
(0.524) 		0.968
(1.00)
TRIM13 7 (2%) 360 0.578
(0.891) 		0.453
(0.786) 		1
(1.00) 		0.553
(0.87) 		0.459
(0.791) 		0.268
(0.589) 		0.688
(0.981) 		0.026
(0.168) 		0.00565
(0.071) 		0.00123
(0.0286)
OR2M3 15 (4%) 352 0.207
(0.507) 		0.0452
(0.226) 		0.00332
(0.0508) 		0.213
(0.514) 		0.0666
(0.279) 		0.00553
(0.0702) 		0.365
(0.695) 		0.162
(0.443) 		0.876
(1.00) 		0.547
(0.864)
MYEOV 6 (2%) 361 0.132
(0.402) 		0.63
(0.934) 		0.44
(0.777) 		0.585
(0.896) 		0.093
(0.333) 		0.0175
(0.132) 		0.015
(0.121) 		0.0029
(0.0466)
SPR 7 (2%) 360 0.081
(0.309) 		0.0108
(0.0979) 		1
(1.00) 		0.235
(0.544) 		0.0056
(0.0706) 		0.00921
(0.0903) 		0.32
(0.646) 		0.149
(0.431)
NT5DC3 12 (3%) 355 0.496
(0.822) 		0.371
(0.7) 		0.628
(0.933) 		0.786
(1.00) 		0.104
(0.352) 		0.00944
(0.0913) 		0.0328
(0.191) 		0.0876
(0.32) 		0.00641
(0.0749) 		0.887
(1.00)
AKAP3 21 (6%) 346 0.869
(1.00) 		0.856
(1.00) 		0.0027
(0.0445) 		0.0389
(0.207) 		0.269
(0.591) 		0.298
(0.62) 		0.00402
(0.057) 		0.0753
(0.298) 		0.261
(0.581) 		0.36
(0.688) 		0.511
(0.836) 		0.141
(0.415)
HAS2 9 (2%) 358 0.0373
(0.205) 		0.0189
(0.139) 		1
(1.00) 		0.187
(0.483) 		0.0626
(0.269) 		0.0152
(0.122) 		0.349
(0.676) 		0.5
(0.825)
MKL2 10 (3%) 357 0.0556
(0.251) 		0.295
(0.616) 		0.229
(0.534) 		0.953
(1.00) 		0.0902
(0.326) 		0.00127
(0.0292) 		0.00756
(0.0814) 		0.472
(0.801) 		0.359
(0.688) 		0.0276
(0.174)
NBEA 46 (13%) 321 0.679
(0.976) 		0.541
(0.858) 		0.015
(0.121) 		0.206
(0.506) 		0.141
(0.415) 		0.442
(0.779) 		0.00548
(0.07) 		0.0241
(0.161) 		0.199
(0.497) 		0.189
(0.485) 		0.773
(1.00) 		0.722
(1.00)
VAV2 17 (5%) 350 0.13
(0.397) 		0.673
(0.97) 		0.0832
(0.313) 		0.0536
(0.247) 		0.0463
(0.23) 		0.0458
(0.228) 		0.00087
(0.0228) 		0.0947
(0.335) 		0.665
(0.963) 		0.68
(0.976)
ZBTB7C 14 (4%) 353 0.171
(0.457) 		0.0674
(0.28) 		0.00887
(0.0884) 		0.525
(0.847) 		0.424
(0.758) 		0.0559
(0.251) 		0.556
(0.871) 		0.0116
(0.103) 		0.222
(0.525) 		0.00091
(0.0234) 		0.095
(0.336) 		0.146
(0.426)
G3BP2 9 (2%) 358 0.0186
(0.138) 		0.138
(0.41) 		0.00627
(0.0743) 		0.371
(0.7) 		0.051
(0.242) 		0.254
(0.57) 		0.125
(0.39) 		0.0278
(0.174) 		0.383
(0.715) 		0.207
(0.507)
MBD6 15 (4%) 352 0.00532
(0.0686) 		0.419
(0.753) 		0.676
(0.974) 		0.358
(0.687) 		0.173
(0.461) 		0.00026
(0.0106) 		0.0732
(0.293) 		5e-05
(0.00393)
CEP135 21 (6%) 346 0.00818
(0.0848) 		0.00716
(0.0792) 		0.11
(0.364) 		1
(1.00) 		0.689
(0.981) 		0.478
(0.805) 		0.779
(1.00) 		0.0114
(0.101) 		0.539
(0.858) 		0.37
(0.699) 		0.392
(0.723) 		0.638
(0.941)
PPP2R1A 14 (4%) 353 0.00214
(0.039) 		0.0747
(0.296) 		0.388
(0.718) 		0.221
(0.523) 		0.0974
(0.34) 		0.00376
(0.0547) 		0.207
(0.507) 		0.00053
(0.0166) 		0.221
(0.523) 		0.49
(0.815)
ECM2 17 (5%) 350 0.255
(0.572) 		0.00981
(0.0933) 		0.028
(0.175) 		0.051
(0.242) 		0.485
(0.813) 		0.816
(1.00) 		0.249
(0.565) 		0.0359
(0.201) 		0.245
(0.559) 		0.603
(0.912)
IL1RAPL1 23 (6%) 344 0.0635
(0.271) 		0.32
(0.646) 		0.0721
(0.29) 		0.862
(1.00) 		0.122
(0.383) 		0.043
(0.22) 		0.618
(0.925) 		0.0315
(0.187) 		0.0515
(0.243) 		0.0249
(0.164) 		0.873
(1.00) 		0.316
(0.641)
DDB1 13 (4%) 354 0.0533
(0.247) 		0.0382
(0.206) 		0.0329
(0.191) 		0.714
(1.00) 		0.188
(0.484) 		0.0714
(0.289) 		0.706
(0.996) 		0.0147
(0.119) 		0.131
(0.399) 		0.0862
(0.318)
CUL2 14 (4%) 353 0.101
(0.345) 		0.197
(0.495) 		0.00838
(0.0859) 		0.174
(0.461) 		0.0787
(0.304) 		0.284
(0.608) 		0.403
(0.735) 		0.0368
(0.204) 		0.248
(0.564) 		0.0177
(0.133) 		0.15
(0.433) 		0.354
(0.682)
CLIP4 14 (4%) 353 0.0301
(0.183) 		0.0248
(0.164) 		0.167
(0.45) 		0.0493
(0.238) 		0.712
(1.00) 		0.722
(1.00) 		0.541
(0.858) 		0.102
(0.349) 		0.676
(0.974) 		0.214
(0.515) 		0.251
(0.567) 		0.883
(1.00)
PAK3 17 (5%) 350 0.285
(0.608) 		0.448
(0.785) 		0.0343
(0.196) 		0.149
(0.43) 		0.0834
(0.313) 		0.59
(0.902) 		0.164
(0.445) 		0.0174
(0.131) 		0.00638
(0.0748) 		0.106
(0.357) 		0.651
(0.951) 		0.887
(1.00)
DSG1 18 (5%) 349 0.323
(0.647) 		0.086
(0.318) 		0.00435
(0.0601) 		0.0448
(0.225) 		0.00539
(0.0692) 		0.113
(0.369) 		0.13
(0.397) 		0.116
(0.376) 		0.0825
(0.312) 		0.725
(1.00)
ZNF585A 16 (4%) 351 0.00882
(0.0882) 		0.0438
(0.222) 		0.00031
(0.0119) 		0.76
(1.00) 		0.504
(0.829) 		0.864
(1.00) 		0.193
(0.49) 		0.0907
(0.327) 		0.868
(1.00) 		0.253
(0.569)
CDK17 11 (3%) 356 0.00152
(0.0323) 		0.579
(0.891) 		0.0131
(0.111) 		0.401
(0.733) 		0.733
(1.00) 		0.283
(0.608) 		0.527
(0.85) 		0.0498
(0.239) 		0.0929
(0.333) 		0.272
(0.594) 		0.15
(0.432) 		0.886
(1.00)
SLC7A10 8 (2%) 359 0.0063
(0.0744) 		0.163
(0.444) 		0.247
(0.563) 		0.632
(0.936) 		0.106
(0.356) 		0.00032
(0.0121) 		0.0722
(0.29) 		0.00062
(0.0184) 		0.151
(0.434) 		0.146
(0.425)
MFN1 13 (4%) 354 0.311
(0.636) 		0.493
(0.818) 		0.0557
(0.251) 		0.0197
(0.142) 		0.0497
(0.239) 		0.00384
(0.0554) 		0.128
(0.393) 		0.293
(0.615) 		0.423
(0.757) 		0.578
(0.891)
CYLC1 27 (7%) 340 0.15
(0.433) 		0.0852
(0.317) 		0.345
(0.671) 		0.249
(0.565) 		0.00357
(0.053) 		0.00055
(0.017) 		0.0624
(0.269) 		0.00873
(0.0877) 		0.332
(0.657) 		0.242
(0.555)
RASA2 15 (4%) 352 0.0339
(0.195) 		0.61
(0.918) 		1
(1.00) 		0.705
(0.995) 		0.0317
(0.187) 		0.0294
(0.181) 		0.0536
(0.247) 		0.208
(0.509) 		0.627
(0.932) 		0.399
(0.73)
DKK2 23 (6%) 344 0.0212
(0.15) 		0.0241
(0.161) 		0.145
(0.424) 		0.414
(0.748) 		0.09
(0.326) 		0.618
(0.925) 		0.172
(0.459) 		0.06
(0.262) 		0.239
(0.55) 		0.0347
(0.197) 		0.765
(1.00) 		0.681
(0.977)
PTPN11 30 (8%) 337 1
(1.00) 		0.0941
(0.334) 		0.064
(0.272) 		0.427
(0.762) 		0.00274
(0.0447) 		2e-05
(0.00216) 		0.0097
(0.0928) 		0.0817
(0.31) 		0.297
(0.619) 		0.221
(0.523)
OSBPL11 16 (4%) 351 0.0301
(0.183) 		0.00256
(0.0431) 		0.0691
(0.283) 		0.803
(1.00) 		0.13
(0.398) 		0.263
(0.583) 		0.72
(1.00) 		0.0409
(0.213) 		0.857
(1.00) 		0.235
(0.544) 		0.914
(1.00) 		0.147
(0.427)
LNX2 16 (4%) 351 0.0275
(0.173) 		0.0174
(0.131) 		0.102
(0.348) 		0.58
(0.891) 		0.686
(0.979) 		0.853
(1.00) 		0.297
(0.619) 		0.00526
(0.0684) 		0.822
(1.00) 		0.498
(0.823)
DENND4A 22 (6%) 345 0.00552
(0.0702) 		0.0174
(0.131) 		0.00033
(0.0123) 		0.483
(0.811) 		0.0735
(0.294) 		0.291
(0.612) 		0.0863
(0.319) 		0.0904
(0.326) 		0.181
(0.474) 		0.122
(0.384) 		0.857
(1.00) 		0.602
(0.911)
HIST1H1E 6 (2%) 361 0.216
(0.518) 		0.0307
(0.185) 		0.389
(0.719) 		0.0476
(0.234) 		0.00507
(0.0666) 		0.17
(0.455) 		0.45
(0.786) 		0.171
(0.457)
RING1 10 (3%) 357 0.00804
(0.0841) 		0.0544
(0.249) 		0.427
(0.762) 		0.257
(0.575) 		0.00289
(0.0465) 		0.00103
(0.0254) 		0.274
(0.597) 		0.082
(0.311)
SLC11A2 8 (2%) 359 0.0549
(0.249) 		0.158
(0.439) 		0.00241
(0.0417) 		0.272
(0.595) 		0.0173
(0.131) 		0.407
(0.739) 		0.207
(0.507) 		0.00856
(0.0869) 		0.583
(0.893) 		0.485
(0.812)
NLK 11 (3%) 356 0.518
(0.84) 		0.214
(0.515) 		0.0251
(0.165) 		0.0839
(0.314) 		0.0763
(0.299) 		0.123
(0.385) 		0.0381
(0.206) 		0.0201
(0.144)
PLA2G4E 10 (3%) 357 0.43
(0.765) 		0.718
(1.00) 		0.467
(0.796) 		0.928
(1.00) 		0.0381
(0.206) 		0.0124
(0.107) 		0.00037
(0.0131) 		0.117
(0.376)
ADNP2 15 (4%) 352 0.0283
(0.176) 		0.0503
(0.241) 		0.537
(0.857) 		0.51
(0.836) 		0.0144
(0.117) 		0.0268
(0.171) 		0.213
(0.514) 		0.0541
(0.248) 		0.252
(0.567) 		0.185
(0.48)
OR1J2 10 (3%) 357 1
(1.00) 		0.366
(0.696) 		0.571
(0.885) 		0.194
(0.492) 		0.00204
(0.0382) 		0.00936
(0.0909) 		0.00037
(0.0131) 		0.144
(0.42)
ARMCX5 8 (2%) 359 0.284
(0.608) 		0.0381
(0.206) 		0.23
(0.536) 		0.333
(0.658) 		0.553
(0.87) 		0.907
(1.00) 		0.833
(1.00) 		0.025
(0.164) 		0.657
(0.955) 		0.0305
(0.184)
TGFBR1 14 (4%) 353 0.159
(0.44) 		0.197
(0.495) 		0.00337
(0.0512) 		0.158
(0.439) 		0.419
(0.753) 		0.732
(1.00) 		0.0153
(0.122) 		0.022
(0.153) 		0.736
(1.00) 		0.452
(0.786)
PALB2 19 (5%) 348 0.223
(0.525) 		0.0236
(0.159) 		0.093
(0.333) 		0.478
(0.806) 		0.367
(0.697) 		0.0415
(0.215) 		0.168
(0.452) 		0.0189
(0.139) 		0.0806
(0.308) 		0.126
(0.391)
BCL9L 19 (5%) 348 0.227
(0.532) 		0.814
(1.00) 		0.0131
(0.111) 		0.0695
(0.284) 		0.0164
(0.128) 		0.284
(0.608) 		0.0569
(0.254) 		0.0169
(0.129) 		0.06
(0.262) 		0.36
(0.688) 		0.28
(0.604) 		0.448
(0.785)
ARFIP1 12 (3%) 355 0.655
(0.953) 		0.812
(1.00) 		0.0059
(0.0725) 		0.0299
(0.182) 		0.133
(0.404) 		0.559
(0.874) 		0.0505
(0.241) 		0.256
(0.574) 		0.469
(0.797) 		0.049
(0.237)
TAOK3 20 (5%) 347 0.0755
(0.298) 		0.319
(0.646) 		0.00736
(0.0804) 		0.102
(0.348) 		0.0834
(0.313) 		0.556
(0.871) 		0.217
(0.519) 		0.0292
(0.18) 		0.0782
(0.303) 		0.0368
(0.204)
ENTPD4 17 (5%) 350 0.286
(0.608) 		0.45
(0.786) 		0.00819
(0.0848) 		0.237
(0.547) 		0.416
(0.75) 		0.931
(1.00) 		0.393
(0.724) 		0.00393
(0.056) 		0.133
(0.404) 		0.0443
(0.224) 		0.945
(1.00) 		0.803
(1.00)
ARHGAP25 10 (3%) 357 0.737
(1.00) 		0.0298
(0.182) 		0.00286
(0.0462) 		0.95
(1.00) 		0.45
(0.786) 		0.0227
(0.156) 		0.91
(1.00) 		0.0865
(0.319) 		0.162
(0.443) 		0.402
(0.734)
OVCH1 22 (6%) 345 0.0345
(0.196) 		0.561
(0.876) 		0.027
(0.171) 		0.616
(0.922) 		0.116
(0.374) 		0.868
(1.00) 		0.281
(0.607) 		0.203
(0.503) 		0.184
(0.478) 		0.00958
(0.0921) 		0.113
(0.368) 		0.673
(0.97)
RRS1 4 (1%) 363 0.467
(0.796) 		1
(1.00) 		0.0166
(0.129) 		0.49
(0.815) 		0.196
(0.494) 		0.0431
(0.22) 		0.29
(0.612) 		0.0411
(0.213)
ARHGEF3 11 (3%) 356 0.285
(0.608) 		0.453
(0.786) 		0.00322
(0.0497) 		0.32
(0.646) 		0.0288
(0.179) 		0.301
(0.624) 		0.331
(0.656) 		0.0981
(0.341) 		0.107
(0.359) 		0.018
(0.134) 		0.217
(0.519) 		1
(1.00)
TBL1XR1 13 (4%) 354 0.0749
(0.297) 		0.321
(0.646) 		0.00706
(0.0786) 		0.0721
(0.29) 		0.773
(1.00) 		0.737
(1.00) 		0.0461
(0.229) 		0.0403
(0.211) 		0.734
(1.00) 		0.545
(0.861)
PVRL4 9 (2%) 358 0.00905
(0.0893) 		0.00976
(0.0931) 		0.0871
(0.32) 		0.862
(1.00) 		0.706
(0.996) 		0.23
(0.536) 		0.537
(0.857) 		0.00616
(0.0738) 		0.522
(0.844) 		0.0769
(0.3)
C12ORF49 4 (1%) 363 0.00253
(0.0429) 		0.33
(0.655) 		0.791
(1.00) 		0.371
(0.7) 		0.036
(0.201) 		0.0866
(0.319) 		0.0929
(0.333) 		0.00055
(0.017)
STRADB 5 (1%) 362 0.0322
(0.189) 		0.272
(0.594) 		0.0138
(0.114) 		0.624
(0.93) 		0.158
(0.439) 		0.0208
(0.148) 		0.311
(0.637) 		0.746
(1.00)
ACTL6A 6 (2%) 361 0.0996
(0.343) 		0.00978
(0.0931) 		0.0319
(0.188) 		0.054
(0.248) 		0.571
(0.885) 		0.135
(0.406) 		0.00032
(0.0121) 		0.292
(0.614) 		0.17
(0.456)
GPR22 9 (2%) 358 0.0195
(0.141) 		0.51
(0.836) 		0.00494
(0.0656) 		0.356
(0.684) 		0.386
(0.717) 		0.0126
(0.108) 		0.301
(0.624) 		0.291
(0.613)
GAB1 15 (4%) 352 0.0345
(0.196) 		0.11
(0.363) 		0.0338
(0.194) 		0.527
(0.849) 		1
(1.00) 		0.809
(1.00) 		0.18
(0.471) 		0.0554
(0.25) 		0.863
(1.00) 		0.0414
(0.214) 		0.124
(0.387) 		0.127
(0.392)
PDP2 5 (1%) 362 0.0633
(0.271) 		0.627
(0.932) 		0.826
(1.00) 		0.431
(0.766) 		0.0191
(0.139) 		0.0354
(0.199) 		0.0354
(0.199) 		0.108
(0.362)
C20ORF177 9 (2%) 358 0.638
(0.94) 		0.296
(0.617) 		0.0258
(0.167) 		0.486
(0.814) 		0.266
(0.586) 		0.0344
(0.196) 		0.169
(0.455) 		0.043
(0.22) 		0.897
(1.00) 		0.285
(0.608)
POMGNT1 8 (2%) 359 0.0382
(0.206) 		0.516
(0.839) 		0.11
(0.363) 		0.327
(0.651) 		0.555
(0.871) 		0.0308
(0.185) 		0.0728
(0.292) 		0.00616
(0.0738)
SMG1 25 (7%) 342 0.0136
(0.113) 		0.087
(0.32) 		0.0315
(0.187) 		0.0688
(0.282) 		0.598
(0.908) 		0.511
(0.836) 		0.628
(0.932) 		0.0953
(0.336) 		0.467
(0.796) 		0.253
(0.569) 		0.0291
(0.179) 		0.745
(1.00)
CHUK 21 (6%) 346 0.287
(0.609) 		0.454
(0.787) 		0.0133
(0.112) 		0.0158
(0.125) 		0.322
(0.646) 		0.027
(0.171) 		0.341
(0.667) 		0.148
(0.429) 		0.205
(0.506) 		0.123
(0.385) 		0.544
(0.86) 		0.85
(1.00)
ING2 6 (2%) 361 0.0115
(0.102) 		0.117
(0.377) 		0.458
(0.79) 		0.54
(0.858) 		0.0046
(0.0625) 		0.00503
(0.0663) 		0.452
(0.786) 		0.311
(0.636)
MOV10L1 15 (4%) 352 0.0423
(0.217) 		0.0166
(0.128) 		0.0917
(0.33) 		0.848
(1.00) 		0.0132
(0.111) 		0.367
(0.696) 		0.91
(1.00) 		0.0884
(0.322) 		0.146
(0.426) 		0.352
(0.68)
SR140 11 (3%) 356 0.00309
(0.0483) 		0.321
(0.646) 		0.0288
(0.179) 		0.126
(0.391) 		0.0512
(0.243) 		0.0715
(0.289) 		0.227
(0.532) 		0.227
(0.532) 		0.0249
(0.164) 		0.26
(0.58)
RNF145 14 (4%) 353 0.0236
(0.159) 		0.00059
(0.0178) 		0.417
(0.751) 		0.511
(0.836) 		0.17
(0.455) 		0.00821
(0.0849) 		0.545
(0.861) 		0.804
(1.00) 		0.323
(0.647) 		0.88
(1.00)
LRRC37B 6 (2%) 361 0.322
(0.646) 		0.448
(0.784) 		0.685
(0.979) 		0.229
(0.535) 		0.0442
(0.223) 		0.00603
(0.0732) 		0.0101
(0.0944) 		0.581
(0.891)
C9ORF71 4 (1%) 363 0.0626
(0.269) 		0.462
(0.792) 		0.017
(0.13) 		0.853
(1.00) 		0.045
(0.225) 		0.0438
(0.222) 		0.0722
(0.29) 		0.37
(0.699)
IQGAP2 21 (6%) 346 0.113
(0.369) 		0.0141
(0.116) 		0.11
(0.364) 		0.132
(0.403) 		0.76
(1.00) 		0.79
(1.00) 		0.563
(0.877) 		0.00586
(0.0723) 		0.853
(1.00) 		0.0088
(0.0881) 		0.474
(0.802) 		0.858
(1.00)
RBMX2 11 (3%) 356 0.0263
(0.169) 		0.158
(0.439) 		0.213
(0.514) 		0.956
(1.00) 		0.0134
(0.112) 		0.00306
(0.048) 		0.722
(1.00) 		0.498
(0.823)
INADL 13 (4%) 354 0.00011
(0.00617) 		0.0379
(0.206) 		0.387
(0.718) 		0.821
(1.00) 		0.0705
(0.287) 		0.00172
(0.0345) 		0.0562
(0.252) 		0.713
(1.00) 		0.88
(1.00) 		1
(1.00)
ESCO2 10 (3%) 357 0.188
(0.484) 		0.453
(0.786) 		0.0231
(0.157) 		0.0304
(0.184) 		0.0695
(0.284) 		0.622
(0.929) 		0.0749
(0.297) 		0.178
(0.468) 		0.232
(0.539) 		0.0462
(0.229)
SV2A 21 (6%) 346 0.223
(0.526) 		0.32
(0.646) 		0.0123
(0.106) 		0.0141
(0.116) 		0.0197
(0.142) 		0.736
(1.00) 		0.328
(0.653) 		0.0503
(0.241) 		0.261
(0.58) 		0.102
(0.348) 		0.22
(0.523) 		0.837
(1.00)
OR6A2 8 (2%) 359 0.337
(0.663) 		0.0082
(0.0849) 		0.0227
(0.156) 		0.825
(1.00) 		0.178
(0.468) 		0.0126
(0.108) 		0.301
(0.624) 		0.849
(1.00)
MYH15 25 (7%) 342 0.0276
(0.174) 		0.11
(0.364) 		0.00307
(0.0482) 		0.0574
(0.256) 		0.0121
(0.105) 		0.902
(1.00) 		0.253
(0.569) 		0.144
(0.42) 		0.787
(1.00) 		0.515
(0.838) 		0.199
(0.497) 		0.569
(0.883)
SLC25A17 7 (2%) 360 0.285
(0.608) 		0.0382
(0.206) 		0.00756
(0.0814) 		0.461
(0.792) 		0.894
(1.00) 		0.984
(1.00) 		0.263
(0.583) 		0.0142
(0.117) 		0.173
(0.461) 		0.622
(0.929)
MATN3 6 (2%) 361 0.0979
(0.34) 		0.0101
(0.0944) 		0.0115
(0.102) 		0.201
(0.499) 		0.678
(0.975) 		0.288
(0.609) 		0.0193
(0.14) 		0.292
(0.614) 		0.226
(0.531)
C1ORF168 14 (4%) 353 0.16
(0.441) 		0.198
(0.496) 		0.00323
(0.0497) 		0.563
(0.877) 		0.31
(0.634) 		0.471
(0.799) 		0.404
(0.736) 		0.225
(0.528) 		0.142
(0.417) 		0.00456
(0.0621) 		0.0214
(0.15) 		0.607
(0.916)
DDX17 8 (2%) 359 0.189
(0.485) 		0.0391
(0.207) 		0.00631
(0.0744) 		0.277
(0.601) 		0.815
(1.00) 		0.47
(0.798) 		0.204
(0.503) 		0.00726
(0.08) 		0.0779
(0.302) 		0.137
(0.409) 		0.0899
(0.326) 		0.399
(0.731)
CACNG3 8 (2%) 359 0.0888
(0.323) 		0.0673
(0.28) 		0.00756
(0.0814) 		0.517
(0.839) 		0.476
(0.804) 		0.854
(1.00) 		0.276
(0.599) 		0.312
(0.637) 		0.0208
(0.148) 		0.00137
(0.0305)
MIA3 19 (5%) 348 0.525
(0.848) 		0.194
(0.492) 		0.00015
(0.00753) 		0.131
(0.4) 		0.288
(0.61) 		0.578
(0.891) 		0.0494
(0.238) 		0.275
(0.598) 		0.41
(0.743) 		0.0786
(0.304) 		0.00012
(0.00654) 		0.0518
(0.244)
TGFBR2 21 (6%) 346 0.312
(0.637) 		0.562
(0.876) 		0.00431
(0.0596) 		0.636
(0.939) 		0.911
(1.00) 		0.324
(0.648) 		0.177
(0.467) 		0.057
(0.254) 		0.227
(0.531) 		0.029
(0.179) 		0.0429
(0.22) 		0.352
(0.68)
SERPINA9 10 (3%) 357 0.601
(0.91) 		0.332
(0.657) 		0.572
(0.886) 		0.674
(0.972) 		0.0113
(0.101) 		0.00315
(0.0489) 		0.00422
(0.0588) 		0.0981
(0.341) 		0.257
(0.575) 		0.977
(1.00)
ZBTB33 16 (4%) 351 0.211
(0.511) 		0.157
(0.439) 		0.00245
(0.042) 		0.369
(0.698) 		0.324
(0.647) 		0.0817
(0.31) 		0.406
(0.738) 		0.0589
(0.259) 		0.00903
(0.0892) 		0.616
(0.922) 		0.00631
(0.0744) 		0.489
(0.815)
OR7C1 9 (2%) 358 0.111
(0.365) 		0.0226
(0.155) 		0.284
(0.608) 		0.774
(1.00) 		0.252
(0.568) 		0.204
(0.504) 		0.274
(0.597) 		0.0242
(0.161) 		0.42
(0.754) 		0.0306
(0.185)
ATIC 13 (4%) 354 0.285
(0.608) 		0.0389
(0.207) 		0.0344
(0.196) 		0.194
(0.492) 		1
(1.00) 		0.786
(1.00) 		0.839
(1.00) 		0.0313
(0.187) 		0.502
(0.827) 		0.509
(0.835)
ATP10B 15 (4%) 352 0.113
(0.368) 		1
(1.00) 		0.446
(0.783) 		0.993
(1.00) 		0.116
(0.374) 		0.0097
(0.0928) 		0.0351
(0.198) 		0.374
(0.703) 		0.00977
(0.0931) 		0.262
(0.581)
SAMD9L 22 (6%) 345 0.00571
(0.0714) 		0.158
(0.439) 		0.0311
(0.186) 		0.753
(1.00) 		0.0176
(0.132) 		0.758
(1.00) 		0.729
(1.00) 		0.229
(0.535) 		0.82
(1.00) 		0.227
(0.532) 		0.526
(0.848) 		0.0955
(0.336)
SCN4A 23 (6%) 344 0.122
(0.384) 		0.0848
(0.316) 		0.0192
(0.14) 		0.258
(0.576) 		0.489
(0.815) 		0.518
(0.839) 		0.566
(0.88) 		0.00385
(0.0554) 		0.114
(0.372) 		0.00663
(0.0762) 		0.411
(0.744) 		0.7
(0.99)
C5ORF34 10 (3%) 357 0.214
(0.516) 		0.434
(0.769) 		0.0117
(0.103) 		0.241
(0.554) 		0.202
(0.501) 		0.00454
(0.062) 		0.137
(0.409) 		0.00037
(0.0131)
GGA2 12 (3%) 355 0.0554
(0.25) 		0.0616
(0.267) 		0.00645
(0.0752) 		0.46
(0.792) 		0.698
(0.989) 		0.748
(1.00) 		0.0311
(0.186) 		0.0172
(0.131) 		0.131
(0.4) 		0.335
(0.661)
ADAMTS19 19 (5%) 348 0.158
(0.439) 		0.196
(0.495) 		0.0025
(0.0425) 		0.451
(0.786) 		0.152
(0.435) 		0.0333
(0.192) 		0.159
(0.44) 		0.0442
(0.223) 		0.664
(0.962) 		0.403
(0.735) 		1
(1.00) 		0.976
(1.00)
KIAA1797 20 (5%) 347 0.654
(0.952) 		0.199
(0.497) 		0.0141
(0.116) 		0.188
(0.484) 		0.689
(0.982) 		0.495
(0.82) 		0.00965
(0.0926) 		0.0101
(0.0945) 		0.24
(0.552) 		0.233
(0.541) 		0.955
(1.00) 		0.885
(1.00)
MAGI1 23 (6%) 344 0.281
(0.606) 		0.368
(0.698) 		0.0008
(0.0216) 		0.483
(0.811) 		0.465
(0.795) 		0.91
(1.00) 		0.149
(0.431) 		0.255
(0.572) 		0.212
(0.513) 		0.0104
(0.0957) 		0.0251
(0.165) 		0.467
(0.796)
FAM20B 10 (3%) 357 0.224
(0.527) 		0.0116
(0.102) 		0.251
(0.567) 		0.432
(0.767) 		0.894
(1.00) 		0.177
(0.466) 		0.0206
(0.147) 		0.385
(0.717) 		0.0127
(0.108) 		0.404
(0.735)
RAPGEF6 17 (5%) 350 0.869
(1.00) 		0.6
(0.909) 		0.0391
(0.207) 		0.125
(0.39) 		1
(1.00) 		0.72
(1.00) 		0.0515
(0.243) 		0.095
(0.336) 		0.179
(0.47) 		0.0271
(0.172) 		0.0123
(0.106) 		0.563
(0.877)
TPR 24 (7%) 343 0.0222
(0.154) 		0.0811
(0.309) 		0.00739
(0.0805) 		0.676
(0.973) 		0.345
(0.671) 		0.233
(0.541) 		0.082
(0.311) 		0.0188
(0.138) 		0.613
(0.92) 		0.0584
(0.258) 		0.0916
(0.33) 		0.185
(0.48)
EIF4G2 15 (4%) 352 0.028
(0.175) 		0.109
(0.363) 		0.00212
(0.0388) 		0.295
(0.617) 		0.027
(0.171) 		0.773
(1.00) 		0.784
(1.00) 		0.142
(0.417) 		0.889
(1.00) 		0.155
(0.438) 		0.879
(1.00) 		0.838
(1.00)
CASP1 6 (2%) 361 0.0315
(0.187) 		0.211
(0.511) 		0.791
(1.00) 		0.865
(1.00) 		0.181
(0.474) 		0.00323
(0.0497) 		0.152
(0.435) 		0.00694
(0.0779)
AGFG2 9 (2%) 358 0.0544
(0.249) 		0.0386
(0.206) 		0.00075
(0.0207) 		0.119
(0.38) 		0.301
(0.623) 		0.305
(0.628) 		0.11
(0.364) 		0.0012
(0.028) 		0.156
(0.439) 		0.128
(0.395)
MCART1 12 (3%) 355 0.00714
(0.0792) 		0.0378
(0.206) 		0.512
(0.837) 		0.607
(0.916) 		0.0142
(0.116) 		0.269
(0.59) 		0.736
(1.00) 		0.0537
(0.247) 		0.877
(1.00) 		0.951
(1.00)
CCDC110 13 (4%) 354 0.158
(0.439) 		1
(1.00) 		0.00303
(0.0478) 		0.295
(0.616) 		0.426
(0.761) 		0.134
(0.405) 		0.0316
(0.187) 		0.0992
(0.342) 		0.172
(0.458) 		0.0536
(0.247) 		0.00648
(0.0753) 		0.884
(1.00)
ANKRD23 4 (1%) 363 0.0642
(0.273) 		0.462
(0.793) 		0.126
(0.391) 		0.815
(1.00) 		0.0194
(0.141) 		0.00621
(0.074) 		0.159
(0.44) 		0.0281
(0.176)
C18ORF19 8 (2%) 359 0.0539
(0.248) 		0.0379
(0.206) 		0.513
(0.837) 		0.447
(0.783) 		0.894
(1.00) 		0.669
(0.966) 		0.207
(0.507) 		0.0249
(0.164) 		0.967
(1.00) 		0.011
(0.0993)
PSMA2 6 (2%) 361 0.0113
(0.101) 		0.0118
(0.103) 		0.167
(0.452) 		0.766
(1.00) 		0.0929
(0.333) 		0.0119
(0.104) 		0.313
(0.638) 		0.479
(0.807)
SLITRK2 21 (6%) 346 0.0165
(0.128) 		0.0349
(0.197) 		0.0345
(0.196) 		0.123
(0.386) 		0.641
(0.943) 		0.748
(1.00) 		0.525
(0.847) 		0.326
(0.65) 		0.236
(0.547) 		0.275
(0.599) 		0.128
(0.395) 		0.154
(0.438)
BRE 10 (3%) 357 0.184
(0.478) 		0.00557
(0.0705) 		0.427
(0.762) 		0.0829
(0.313) 		0.00813
(0.0845) 		0.221
(0.523) 		0.319
(0.645) 		0.0195
(0.141)
ABLIM3 16 (4%) 351 0.00768
(0.0818) 		0.00701
(0.0784) 		0.0667
(0.279) 		0.847
(1.00) 		0.328
(0.652) 		0.649
(0.95) 		0.719
(1.00) 		0.0395
(0.208) 		0.852
(1.00) 		0.0987
(0.341) 		0.244
(0.558) 		0.403
(0.735)
KIAA0240 9 (2%) 358 0.0975
(0.34) 		0.00969
(0.0927) 		0.00076
(0.0208) 		0.196
(0.494) 		0.286
(0.608) 		0.624
(0.93) 		0.169
(0.455) 		0.00182
(0.0357) 		0.263
(0.583) 		0.503
(0.829)
OSMR 20 (5%) 347 0.106
(0.356) 		0.58
(0.891) 		0.0226
(0.155) 		0.026
(0.168) 		0.276
(0.599) 		0.418
(0.751) 		0.094
(0.334) 		0.0258
(0.167) 		0.166
(0.449) 		0.511
(0.836) 		0.176
(0.466) 		0.136
(0.408)
GABRA6 19 (5%) 348 0.0517
(0.244) 		0.576
(0.89) 		0.0299
(0.182) 		0.468
(0.796) 		0.155
(0.438) 		0.946
(1.00) 		0.248
(0.564) 		0.0177
(0.133) 		0.0971
(0.339) 		0.0354
(0.199)
CPS1 30 (8%) 337 0.0388
(0.207) 		0.369
(0.698) 		0.022
(0.153) 		0.799
(1.00) 		0.00617
(0.0738) 		0.838
(1.00) 		0.121
(0.383) 		0.342
(0.667) 		0.494
(0.818) 		0.778
(1.00) 		0.163
(0.444) 		0.792
(1.00)
TBC1D10C 8 (2%) 359 0.06
(0.262) 		0.0302
(0.183) 		0.459
(0.791) 		0.0766
(0.3) 		0.554
(0.871) 		0.0043
(0.0595) 		0.29
(0.612) 		0.102
(0.348) 		0.778
(1.00) 		0.0235
(0.159)
ERCC6 28 (8%) 339 0.139
(0.412) 		0.0346
(0.196) 		0.00047
(0.0154) 		0.355
(0.684) 		0.517
(0.839) 		0.837
(1.00) 		0.358
(0.687) 		0.00366
(0.0539) 		0.0713
(0.288) 		0.0763
(0.299) 		0.381
(0.713) 		0.186
(0.481)
ATP11C 25 (7%) 342 0.00868
(0.0877) 		0.359
(0.688) 		0.0315
(0.187) 		0.258
(0.576) 		0.0193
(0.141) 		0.583
(0.893) 		0.291
(0.613) 		0.0632
(0.27) 		0.0785
(0.304) 		0.338
(0.664) 		0.0619
(0.267) 		0.722
(1.00)
IGSF5 14 (4%) 353 0.269
(0.591) 		0.0211
(0.149) 		0.0244
(0.162) 		0.049
(0.237) 		0.388
(0.718) 		0.771
(1.00) 		0.181
(0.474) 		0.157
(0.439) 		0.189
(0.485) 		0.0822
(0.311)
DDHD2 9 (2%) 358 0.0541
(0.248) 		0.0389
(0.207) 		0.0436
(0.221) 		0.775
(1.00) 		0.249
(0.565) 		0.218
(0.52) 		1
(1.00) 		0.0289
(0.179) 		0.365
(0.695) 		0.257
(0.575)
OR9Q1 6 (2%) 361 0.135
(0.406) 		0.377
(0.708) 		0.728
(1.00) 		0.549
(0.866) 		0.0697
(0.285) 		0.00474
(0.0639) 		0.00336
(0.0512) 		0.00244
(0.0419) 		0.152
(0.435) 		0.537
(0.857)
SSRP1 13 (4%) 354 0.0337
(0.194) 		0.32
(0.646) 		0.0761
(0.299) 		0.196
(0.495) 		0.076
(0.299) 		0.00012
(0.00654) 		0.00015
(0.00753) 		0.125
(0.389) 		0.0589
(0.259) 		0.859
(1.00)
ST6GALNAC3 12 (3%) 355 0.164
(0.446) 		0.117
(0.377) 		0.455
(0.787) 		0.854
(1.00) 		0.0112
(0.1) 		0.016
(0.126) 		0.0269
(0.171) 		0.201
(0.499) 		0.944
(1.00) 		0.159
(0.44)
ZNF559 15 (4%) 352 0.0143
(0.117) 		0.0347
(0.197) 		0.00782
(0.0828) 		0.161
(0.442) 		0.594
(0.905) 		0.549
(0.866) 		0.629
(0.933) 		0.582
(0.892) 		0.787
(1.00) 		0.764
(1.00) 		0.777
(1.00) 		0.886
(1.00)
GPR113 14 (4%) 353 0.241
(0.555) 		0.196
(0.494) 		0.00352
(0.0528) 		0.178
(0.469) 		0.104
(0.353) 		0.98
(1.00) 		0.208
(0.509) 		0.0235
(0.159) 		0.112
(0.366) 		0.00104
(0.0255)
MAP3K10 10 (3%) 357 0.0551
(0.25) 		0.438
(0.774) 		0.108
(0.362) 		0.911
(1.00) 		0.0216
(0.151) 		0.00062
(0.0184) 		0.186
(0.48) 		0.0418
(0.216)
GOLIM4 9 (2%) 358 0.0947
(0.335) 		0.0858
(0.318) 		0.0187
(0.138) 		0.685
(0.979) 		0.596
(0.907) 		0.971
(1.00) 		0.0941
(0.334) 		0.0144
(0.117) 		0.212
(0.512) 		0.046
(0.229)
SLC9A2 10 (3%) 357 0.023
(0.157) 		0.077
(0.3) 		0.344
(0.67) 		0.652
(0.951) 		0.0219
(0.153) 		0.0158
(0.125) 		0.35
(0.678) 		0.252
(0.568) 		0.416
(0.75) 		0.429
(0.763)
C16ORF88 7 (2%) 360 0.0166
(0.128) 		0.273
(0.596) 		0.443
(0.78) 		0.486
(0.814) 		0.00654
(0.0757) 		0.148
(0.428) 		0.0472
(0.233) 		0.917
(1.00)
HECW2 28 (8%) 339 0.0384
(0.206) 		0.0171
(0.13) 		0.00318
(0.0492) 		0.597
(0.907) 		0.0507
(0.242) 		0.152
(0.435) 		0.433
(0.768) 		0.138
(0.411) 		0.0901
(0.326) 		0.056
(0.252) 		0.26
(0.578) 		0.83
(1.00)
RUSC2 12 (3%) 355 0.219
(0.522) 		0.321
(0.646) 		0.0153
(0.122) 		0.228
(0.533) 		0.858
(1.00) 		0.982
(1.00) 		0.362
(0.691) 		0.0706
(0.287) 		0.0327
(0.191) 		0.0424
(0.218)
SCYL2 16 (4%) 351 0.00517
(0.0674) 		0.0609
(0.265) 		0.811
(1.00) 		0.263
(0.583) 		0.0251
(0.165) 		0.00473
(0.0638) 		0.089
(0.323) 		0.575
(0.889)
RBM15B 8 (2%) 359 0.00211
(0.0388) 		0.376
(0.707) 		0.224
(0.527) 		0.803
(1.00) 		0.554
(0.871) 		0.0384
(0.206) 		0.238
(0.55) 		0.0493
(0.238) 		0.329
(0.653) 		0.129
(0.396)
NXPH1 8 (2%) 359 0.0108
(0.0979) 		0.797
(1.00) 		0.00744
(0.0808) 		0.00199
(0.0377) 		1
(1.00) 		0.229
(0.535) 		0.0686
(0.282) 		0.26
(0.579) 		0.352
(0.68) 		0.0597
(0.261) 		0.38
(0.711) 		0.607
(0.916)
GRIN2B 26 (7%) 341 0.076
(0.299) 		0.0688
(0.282) 		0.00242
(0.0417) 		0.421
(0.755) 		0.203
(0.502) 		0.616
(0.922) 		0.201
(0.499) 		0.00016
(0.00786) 		0.118
(0.379) 		0.0368
(0.204) 		0.0644
(0.273) 		0.989
(1.00)
COLEC12 17 (5%) 350 0.0572
(0.255) 		0.109
(0.363) 		0.0003
(0.0117) 		0.392
(0.723) 		0.00647
(0.0753) 		0.493
(0.818) 		0.279
(0.604) 		0.0359
(0.201) 		0.504
(0.83) 		0.0633
(0.271)
GPR161 9 (2%) 358 0.288
(0.609) 		0.451
(0.786) 		0.00093
(0.0238) 		0.107
(0.359) 		0.427
(0.762) 		0.567
(0.881) 		0.0172
(0.131) 		0.0886
(0.322) 		0.193
(0.49) 		0.0124
(0.107)
DPP8 13 (4%) 354 0.027
(0.171) 		0.111
(0.365) 		0.0245
(0.162) 		0.197
(0.495) 		0.558
(0.873) 		0.15
(0.433) 		0.171
(0.457) 		0.0146
(0.119) 		0.121
(0.383) 		0.191
(0.488)
CDS2 9 (2%) 358 0.0995
(0.342) 		0.195
(0.494) 		0.0193
(0.141) 		0.627
(0.932) 		0.572
(0.886) 		0.764
(1.00) 		0.309
(0.633) 		0.0198
(0.143) 		0.155
(0.439) 		0.0268
(0.171)
CCDC66 9 (2%) 358 0.00258
(0.0432) 		0.136
(0.407) 		0.504
(0.829) 		0.415
(0.749) 		0.105
(0.354) 		0.00693
(0.0779) 		0.0795
(0.306) 		0.0167
(0.129) 		0.151
(0.433) 		0.187
(0.482)
TTC13 9 (2%) 358 0.284
(0.608) 		0.0383
(0.206) 		0.00449
(0.0616) 		0.27
(0.592) 		0.251
(0.566) 		0.723
(1.00) 		0.0875
(0.32) 		0.0001
(0.00587) 		0.607
(0.916) 		0.177
(0.466)
ZNF594 14 (4%) 353 0.0545
(0.249) 		0.157
(0.439) 		0.0453
(0.226) 		0.0453
(0.226) 		0.0213
(0.15) 		0.144
(0.422) 		0.164
(0.446) 		0.331
(0.656) 		0.708
(0.998) 		0.0986
(0.341) 		0.12
(0.382) 		0.626
(0.932)
ZNF462 26 (7%) 341 0.0513
(0.243) 		0.125
(0.39) 		0.00079
(0.0214) 		0.659
(0.957) 		0.156
(0.439) 		0.386
(0.717) 		0.229
(0.535) 		0.0113
(0.101) 		0.261
(0.58) 		0.00488
(0.0651) 		0.504
(0.83) 		0.279
(0.603)
AMBRA1 18 (5%) 349 0.159
(0.44) 		0.196
(0.494) 		0.0216
(0.151) 		0.887
(1.00) 		0.128
(0.395) 		0.46
(0.792) 		0.118
(0.379) 		0.0148
(0.12) 		0.0891
(0.324) 		0.0208
(0.148) 		0.0588
(0.259) 		0.137
(0.409)
MCF2L2 19 (5%) 348 0.253
(0.569) 		0.812
(1.00) 		0.00278
(0.0452) 		0.00116
(0.0273) 		0.0353
(0.199) 		0.615
(0.921) 		0.217
(0.519) 		0.229
(0.534) 		0.104
(0.353) 		0.0527
(0.246) 		0.277
(0.601) 		0.611
(0.919)
ANKRD26 19 (5%) 348 0.0768
(0.3) 		0.067
(0.28) 		0.0914
(0.329) 		0.0455
(0.227) 		0.12
(0.382) 		0.923
(1.00) 		0.245
(0.56) 		0.0147
(0.119) 		0.388
(0.719) 		0.011
(0.099) 		0.284
(0.608) 		0.837
(1.00)
MAGOHB 3 (1%) 364 0.721
(1.00) 		0.0244
(0.162) 		0.34
(0.666) 		0.657
(0.955) 		0.0142
(0.116) 		0.135
(0.407) 		0.163
(0.444) 		0.768
(1.00) 		0.632
(0.936) 		0.0408
(0.212)
SKIV2L 12 (3%) 355 0.0652
(0.276) 		0.452
(0.786) 		0.00785
(0.083) 		0.527
(0.849) 		0.582
(0.892) 		0.406
(0.738) 		0.00439
(0.0605) 		0.377
(0.707) 		0.0706
(0.287) 		0.016
(0.126) 		0.898
(1.00) 		0.773
(1.00)
CDH24 12 (3%) 355 0.0731
(0.293) 		0.208
(0.509) 		0.0153
(0.122) 		0.0114
(0.101) 		0.847
(1.00) 		0.491
(0.816) 		0.133
(0.403) 		0.348
(0.674) 		0.159
(0.44) 		0.0385
(0.206)
C1ORF124 8 (2%) 359 0.0989
(0.342) 		0.0101
(0.0947) 		0.0393
(0.207) 		0.684
(0.978) 		0.0511
(0.243) 		0.205
(0.505) 		0.746
(1.00) 		0.0474
(0.233) 		0.412
(0.745) 		0.175
(0.464)
APLP1 16 (4%) 351 0.233
(0.541) 		0.0208
(0.148) 		0.0563
(0.252) 		0.741
(1.00) 		0.86
(1.00) 		0.928
(1.00) 		0.0497
(0.239) 		0.0195
(0.141) 		0.295
(0.617) 		0.236
(0.546)
AAMP 3 (1%) 364 0.159
(0.44) 		0.0244
(0.162) 		0.614
(0.92) 		0.458
(0.79) 		0.0803
(0.308) 		0.0313
(0.187) 		0.0247
(0.163) 		0.203
(0.503) 		0.152
(0.435) 		0.835
(1.00)
ZNF418 14 (4%) 353 0.00862
(0.0874) 		0.0524
(0.245) 		0.00889
(0.0884) 		0.163
(0.444) 		0.109
(0.363) 		0.656
(0.954) 		0.0255
(0.166) 		0.361
(0.689) 		0.517
(0.839) 		0.491
(0.816)
MED12L 28 (8%) 339 0.0181
(0.135) 		0.0352
(0.198) 		0.00298
(0.0474) 		0.315
(0.64) 		0.533
(0.855) 		0.806
(1.00) 		0.167
(0.451) 		0.0729
(0.292) 		0.116
(0.375) 		0.901
(1.00) 		0.416
(0.75) 		0.836
(1.00)
KRT25 10 (3%) 357 0.0537
(0.247) 		0.0382
(0.206) 		0.476
(0.805) 		0.0839
(0.314) 		0.0152
(0.122) 		0.779
(1.00) 		0.809
(1.00) 		0.0342
(0.196) 		0.176
(0.465) 		0.616
(0.923)
KIAA0319 15 (4%) 352 0.443
(0.78) 		1
(1.00) 		0.034
(0.195) 		0.0338
(0.194) 		0.315
(0.64) 		0.758
(1.00) 		0.00132
(0.0298) 		0.642
(0.944) 		0.12
(0.382) 		0.0733
(0.293)
BRD4 20 (5%) 347 0.115
(0.372) 		0.0232
(0.158) 		0.0137
(0.113) 		0.196
(0.495) 		0.153
(0.436) 		0.603
(0.912) 		0.562
(0.876) 		0.0178
(0.133) 		0.179
(0.47) 		0.456
(0.788) 		0.742
(1.00) 		0.744
(1.00)
PKHD1 57 (16%) 310 0.00085
(0.0223) 		0.00521
(0.0679) 		0.0928
(0.333) 		1
(1.00) 		0.114
(0.37) 		0.483
(0.811) 		0.825
(1.00) 		0.0129
(0.109) 		0.0566
(0.253) 		0.12
(0.381) 		0.215
(0.517) 		0.941
(1.00)
TOX 15 (4%) 352 0.055
(0.25) 		0.159
(0.44) 		0.00157
(0.0329) 		0.792
(1.00) 		0.422
(0.756) 		0.414
(0.748) 		0.154
(0.438) 		0.0322
(0.189) 		0.0429
(0.22) 		0.115
(0.373)
CCDC158 16 (4%) 351 0.0735
(0.294) 		0.321
(0.646) 		0.00011
(0.00617) 		0.00649
(0.0754) 		0.131
(0.399) 		0.785
(1.00) 		0.0152
(0.122) 		0.21
(0.511) 		0.438
(0.774) 		0.0701
(0.286) 		0.474
(0.802) 		0.859
(1.00)
ATR 28 (8%) 339 0.0404
(0.211) 		0.268
(0.589) 		0.108
(0.362) 		1
(1.00) 		0.401
(0.733) 		0.792
(1.00) 		0.497
(0.822) 		0.017
(0.13) 		0.295
(0.617) 		0.035
(0.197) 		0.528
(0.85) 		0.155
(0.438)
CCDC14 11 (3%) 356 0.284
(0.608) 		0.0395
(0.208) 		0.00329
(0.0504) 		0.0354
(0.199) 		0.138
(0.411) 		0.886
(1.00) 		0.412
(0.745) 		0.0807
(0.309) 		0.465
(0.795) 		0.668
(0.966) 		0.151
(0.433) 		0.185
(0.479)
GUCY2F 19 (5%) 348 0.0293
(0.18) 		0.0228
(0.156) 		0.0664
(0.278) 		0.345
(0.671) 		0.82
(1.00) 		0.926
(1.00) 		0.787
(1.00) 		0.0136
(0.113) 		0.479
(0.807) 		0.186
(0.481) 		0.0585
(0.258) 		0.0923
(0.332)
NAA15 15 (4%) 352 0.157
(0.439) 		0.195
(0.494) 		0.00532
(0.0686) 		0.176
(0.466) 		0.0061
(0.0736) 		0.902
(1.00) 		0.18
(0.471) 		0.0402
(0.211) 		0.733
(1.00) 		0.0589
(0.259)
ADAM30 8 (2%) 359 0.0555
(0.25) 		0.0387
(0.207) 		0.039
(0.207) 		0.443
(0.78) 		0.137
(0.409) 		0.543
(0.859) 		0.77
(1.00) 		0.00375
(0.0546) 		0.748
(1.00) 		0.252
(0.568)
ABCF3 15 (4%) 352 0.283
(0.608) 		0.039
(0.207) 		0.0244
(0.162) 		0.808
(1.00) 		0.892
(1.00) 		0.949
(1.00) 		0.0809
(0.309) 		0.0878
(0.321) 		0.143
(0.419) 		0.179
(0.47) 		0.00642
(0.0749) 		0.834
(1.00)
ZHX2 17 (5%) 350 0.269
(0.591) 		0.218
(0.52) 		0.00032
(0.0121) 		0.0536
(0.247) 		0.418
(0.752) 		0.907
(1.00) 		0.135
(0.407) 		0.0105
(0.0966) 		0.14
(0.414) 		0.00077
(0.021)
GRIN2A 41 (11%) 326 0.387
(0.718) 		0.148
(0.428) 		0.0232
(0.158) 		0.627
(0.932) 		0.0496
(0.239) 		0.0966
(0.339) 		0.937
(1.00) 		0.31
(0.634) 		0.218
(0.52) 		0.0319
(0.188) 		0.476
(0.804) 		0.801
(1.00)
PIGN 7 (2%) 360 0.0169
(0.13) 		0.038
(0.206) 		0.452
(0.786) 		0.848
(1.00) 		0.0662
(0.278) 		0.0109
(0.0986) 		0.0771
(0.301) 		0.158
(0.439)
COL11A1 45 (12%) 322 0.0663
(0.278) 		0.19
(0.486) 		0.00014
(0.00717) 		0.036
(0.201) 		0.0766
(0.3) 		0.696
(0.988) 		0.143
(0.419) 		0.0087
(0.0877) 		0.132
(0.401) 		0.155
(0.439) 		0.29
(0.612) 		0.557
(0.872)
RPS6KC1 15 (4%) 352 0.157
(0.439) 		0.197
(0.495) 		0.0175
(0.132) 		0.108
(0.36) 		0.444
(0.781) 		0.27
(0.592) 		0.243
(0.556) 		0.0413
(0.214) 		0.0472
(0.232) 		0.127
(0.392)
NFATC2IP 3 (1%) 364 0.483
(0.811) 		0.109
(0.363) 		0.792
(1.00) 		0.372
(0.701) 		0.015
(0.121) 		0.0307
(0.185) 		0.253
(0.569) 		0.00486
(0.0648)
HSPA4L 8 (2%) 359 0.0528
(0.246) 		0.0385
(0.206) 		0.0387
(0.207) 		0.863
(1.00) 		0.765
(1.00) 		0.891
(1.00) 		1
(1.00) 		0.0265
(0.17) 		0.323
(0.647) 		0.161
(0.443)
GSG2 6 (2%) 361 0.0317
(0.187) 		0.0367
(0.204) 		0.729
(1.00) 		0.404
(0.736) 		0.18
(0.471) 		0.498
(0.823) 		0.0298
(0.182) 		0.751
(1.00)
OTUD4 19 (5%) 348 0.0745
(0.296) 		0.0661
(0.278) 		0.00272
(0.0445) 		0.888
(1.00) 		0.432
(0.768) 		0.62
(0.926) 		0.112
(0.367) 		0.00572
(0.0714) 		0.0275
(0.173) 		0.348
(0.674)
C6ORF15 6 (2%) 361 0.0112
(0.1) 		0.459
(0.791) 		0.137
(0.409) 		0.463
(0.793) 		0.181
(0.474) 		0.0331
(0.192) 		0.413
(0.746) 		0.0288
(0.179)
PTPN13 22 (6%) 345 0.743
(1.00) 		0.856
(1.00) 		0.00118
(0.0277) 		0.0253
(0.165) 		0.32
(0.646) 		0.388
(0.718) 		0.0668
(0.279) 		0.0266
(0.17) 		0.177
(0.466) 		0.23
(0.536)
UGGT1 18 (5%) 349 0.327
(0.651) 		0.111
(0.365) 		0.00452
(0.0618) 		0.42
(0.754) 		0.099
(0.342) 		0.594
(0.906) 		0.105
(0.356) 		0.00403
(0.057) 		0.559
(0.874) 		0.0174
(0.131) 		0.28
(0.605) 		0.2
(0.498)
CCDC19 15 (4%) 352 0.784
(1.00) 		1
(1.00) 		0.00552
(0.0702) 		0.0446
(0.225) 		0.121
(0.383) 		0.253
(0.569) 		0.00632
(0.0744) 		0.0535
(0.247) 		0.121
(0.383) 		0.11
(0.363) 		0.0658
(0.278) 		0.747
(1.00)
DONSON 4 (1%) 363 0.339
(0.665) 		0.0363
(0.202) 		0.461
(0.792) 		0.551
(0.869) 		0.0362
(0.202) 		0.0853
(0.317) 		0.367
(0.696) 		0.0485
(0.236)
LARP7 8 (2%) 359 0.169
(0.454) 		0.439
(0.775) 		0.767
(1.00) 		0.883
(1.00) 		0.0149
(0.12) 		0.0156
(0.124) 		0.0467
(0.231) 		0.134
(0.406)
KLK11 5 (1%) 362 0.0315
(0.187) 		0.037
(0.204) 		1
(1.00) 		0.886
(1.00) 		0.123
(0.385) 		0.0067
(0.0765) 		0.308
(0.632) 		0.0765
(0.3)
TAF2 17 (5%) 350 0.0737
(0.294) 		0.21
(0.51) 		0.0382
(0.206) 		0.0263
(0.169) 		0.288
(0.609) 		0.411
(0.744) 		0.822
(1.00) 		0.265
(0.585) 		0.0401
(0.21) 		0.999
(1.00) 		0.0559
(0.251) 		0.922
(1.00)
TEK 28 (8%) 339 0.273
(0.595) 		0.459
(0.791) 		0.0105
(0.0963) 		0.324
(0.648) 		0.357
(0.685) 		0.0577
(0.256) 		0.61
(0.918) 		0.0385
(0.206) 		0.00088
(0.0229) 		0.105
(0.354) 		0.0772
(0.301) 		0.284
(0.608)
IL8 5 (1%) 362 0.321
(0.646) 		0.861
(1.00) 		0.373
(0.703) 		0.824
(1.00) 		0.00328
(0.0503) 		0.0142
(0.116) 		0.0495
(0.238) 		0.107
(0.359) 		0.217
(0.519) 		0.103
(0.351)
ADCY9 18 (5%) 349 0.677
(0.974) 		1
(1.00) 		0.0204
(0.146) 		0.578
(0.891) 		0.176
(0.466) 		0.776
(1.00) 		0.169
(0.455) 		0.0305
(0.184) 		0.104
(0.352) 		0.0473
(0.233) 		0.161
(0.442) 		0.575
(0.889)
TNXB 39 (11%) 328 0.279
(0.604) 		0.768
(1.00) 		0.00021
(0.00928) 		0.35
(0.678) 		0.115
(0.373) 		0.348
(0.674) 		0.133
(0.403) 		0.0224
(0.155) 		0.078
(0.303) 		0.0196
(0.142) 		0.22
(0.522) 		0.278
(0.601)
SBF1 14 (4%) 353 0.00541
(0.0694) 		0.0228
(0.156) 		1
(1.00) 		0.391
(0.721) 		0.274
(0.597) 		9e-05
(0.00567) 		0.544
(0.86) 		0.0636
(0.271) 		0.152
(0.435) 		0.177
(0.466)
SESTD1 15 (4%) 352 0.196
(0.495) 		0.371
(0.7) 		0.00565
(0.071) 		0.324
(0.648) 		0.00962
(0.0923) 		0.365
(0.694) 		0.0322
(0.189) 		0.145
(0.422) 		0.25
(0.565) 		0.122
(0.384) 		0.279
(0.603) 		0.403
(0.735)
EPHB1 36 (10%) 331 0.265
(0.585) 		0.813
(1.00) 		0.388
(0.718) 		0.773
(1.00) 		0.0828
(0.312) 		0.204
(0.504) 		0.00316
(0.049) 		4e-05
(0.00342) 		0.0095
(0.0917) 		0.752
(1.00) 		0.995
(1.00) 		0.966
(1.00)
GABRQ 15 (4%) 352 0.00768
(0.0818) 		0.108
(0.362) 		0.114
(0.371) 		0.633
(0.936) 		0.203
(0.502) 		0.936
(1.00) 		0.206
(0.507) 		0.0106
(0.0967) 		0.988
(1.00) 		0.0383
(0.206) 		1
(1.00) 		0.534
(0.855)
NTSR2 8 (2%) 359 0.0982
(0.341) 		0.0103
(0.095) 		0.0385
(0.206) 		0.686
(0.979) 		0.735
(1.00) 		0.128
(0.393) 		0.158
(0.439) 		0.00104
(0.0255) 		0.621
(0.927) 		0.231
(0.537)
TLR9 11 (3%) 356 0.518
(0.84) 		0.856
(1.00) 		0.00084
(0.0221) 		0.0775
(0.302) 		0.154
(0.438) 		0.603
(0.911) 		0.0268
(0.171) 		0.128
(0.395) 		0.468
(0.796) 		0.432
(0.768) 		0.152
(0.434) 		0.0494
(0.238)
LUZP1 15 (4%) 352 0.313
(0.638) 		0.689
(0.981) 		0.00544
(0.0696) 		0.0382
(0.206) 		0.945
(1.00) 		0.711
(1) 		0.113
(0.368) 		0.0946
(0.335) 		0.042
(0.216) 		0.795
(1.00) 		0.151
(0.433) 		0.837
(1.00)
AVPR1A 11 (3%) 356 0.00012
(0.00654) 		0.0774
(0.301) 		0.607
(0.916) 		0.939
(1.00) 		0.0504
(0.241) 		0.035
(0.198) 		0.0114
(0.101) 		0.39
(0.72)
RPAP2 6 (2%) 361 0.0115
(0.102) 		0.211
(0.511) 		0.137
(0.409) 		0.477
(0.805) 		0.0229
(0.156) 		0.498
(0.823) 		0.172
(0.459) 		0.0004
(0.0139)
TNNT2 8 (2%) 359 1
(1.00) 		0.155
(0.438) 		0.0377
(0.206) 		0.196
(0.494) 		0.373
(0.703) 		0.033
(0.191) 		0.207
(0.507) 		0.0389
(0.207) 		0.188
(0.484) 		0.125
(0.389)
SF3B2 10 (3%) 357 0.0162
(0.127) 		0.226
(0.531) 		0.267
(0.587) 		0.56
(0.875) 		0.122
(0.384) 		0.00571
(0.0714) 		0.0514
(0.243) 		0.0533
(0.247) 		0.00633
(0.0745) 		0.535
(0.856)
CYTSA 11 (3%) 356 0.162
(0.444) 		0.0164
(0.128) 		0.0248
(0.164) 		0.0252
(0.165) 		0.34
(0.666) 		0.902
(1.00) 		0.0938
(0.334) 		0.0984
(0.341) 		0.477
(0.805) 		0.227
(0.531)
TSC2 15 (4%) 352 0.192
(0.488) 		0.89
(1.00) 		0.837
(1.00) 		0.341
(0.667) 		0.00041
(0.0142) 		0.00138
(0.0307) 		0.00606
(0.0733) 		0.126
(0.391) 		0.636
(0.939) 		0.923
(1.00)
SLC17A6 13 (4%) 354 0.0642
(0.273) 		0.0502
(0.241) 		0.769
(1.00) 		0.116
(0.374) 		0.0247
(0.163) 		0.0143
(0.117) 		0.00415
(0.0581) 		0.133
(0.404) 		0.41
(0.743) 		0.239
(0.551)
ANKRD32 13 (4%) 354 0.0546
(0.249) 		0.0391
(0.207) 		0.00302
(0.0477) 		0.148
(0.429) 		0.0763
(0.299) 		0.31
(0.634) 		0.708
(0.997) 		0.0202
(0.145) 		0.603
(0.912) 		0.538
(0.857) 		0.837
(1.00) 		0.609
(0.917)
HDAC11 8 (2%) 359 0.0387
(0.207) 		0.397
(0.729) 		0.263
(0.583) 		0.155
(0.438) 		0.137
(0.409) 		0.00166
(0.0339) 		0.00839
(0.0859) 		0.196
(0.495)
TBC1D25 11 (3%) 356 0.00404
(0.057) 		0.00471
(0.0636) 		0.0795
(0.306) 		1
(1.00) 		0.554
(0.871) 		0.754
(1.00) 		0.199
(0.497) 		0.00031
(0.0119) 		0.981
(1.00) 		0.324
(0.648)
AKAP13 20 (5%) 347 0.0583
(0.257) 		0.112
(0.366) 		0.0278
(0.174) 		0.888
(1.00) 		0.0121
(0.105) 		0.867
(1.00) 		0.488
(0.814) 		0.241
(0.554) 		0.022
(0.153) 		0.748
(1.00)
KDR 28 (8%) 339 0.0268
(0.171) 		0.111
(0.365) 		0.00924
(0.0904) 		0.649
(0.95) 		0.0613
(0.266) 		0.266
(0.586) 		0.638
(0.94) 		0.0105
(0.0963) 		0.344
(0.67) 		0.839
(1.00) 		0.609
(0.917) 		0.756
(1.00)
CAMK2G 13 (4%) 354 0.0534
(0.247) 		0.0381
(0.206) 		0.0149
(0.12) 		0.295
(0.617) 		0.213
(0.514) 		0.967
(1.00) 		0.142
(0.417) 		0.00396
(0.0563) 		0.353
(0.682) 		0.0612
(0.266)
FAM83D 11 (3%) 356 0.189
(0.485) 		0.453
(0.786) 		0.0268
(0.171) 		0.123
(0.386) 		0.712
(1.00) 		0.561
(0.875) 		0.0959
(0.337) 		0.0405
(0.211) 		0.0758
(0.298) 		0.00466
(0.0631)
FAM123B 50 (14%) 317 0.472
(0.801) 		0.142
(0.417) 		0.00173
(0.0345) 		0.0253
(0.166) 		0.846
(1.00) 		0.738
(1.00) 		0.708
(0.998) 		0.419
(0.753) 		0.74
(1.00) 		0.158
(0.439) 		0.591
(0.903) 		0.495
(0.82)
TXNDC2 22 (6%) 345 0.704
(0.995) 		0.669
(0.967) 		0.334
(0.659) 		0.329
(0.653) 		0.0566
(0.253) 		0.0007
(0.0198) 		0.0179
(0.134) 		0.111
(0.365) 		0.82
(1.00) 		0.963
(1.00)
B2M 15 (4%) 352 0.286
(0.608) 		0.453
(0.786) 		0.00194
(0.0372) 		0.0744
(0.296) 		0.13
(0.397) 		0.807
(1.00) 		0.0842
(0.315) 		0.0913
(0.329) 		0.218
(0.52) 		0.0431
(0.22) 		0.0836
(0.314) 		0.0812
(0.309)
ZFP36L2 14 (4%) 353 0.802
(1.00) 		0.261
(0.581) 		0.0874
(0.32) 		0.181
(0.474) 		0.318
(0.644) 		0.0242
(0.161) 		0.237
(0.547) 		0.0009
(0.0232) 		0.526
(0.848) 		0.688
(0.981)
SELPLG 16 (4%) 351 0.71
(0.999) 		0.0308
(0.185) 		0.762
(1.00) 		0.899
(1.00) 		0.147
(0.427) 		0.00347
(0.0522) 		0.136
(0.408) 		0.418
(0.751) 		0.716
(1.00) 		0.992
(1.00)
KDM6A 27 (7%) 340 0.554
(0.871) 		0.545
(0.862) 		0.113
(0.369) 		0.576
(0.89) 		0.00631
(0.0744) 		0.00023
(0.00978) 		0.0951
(0.336) 		0.417
(0.751) 		0.816
(1.00) 		0.544
(0.86)
OR4D10 14 (4%) 353 0.541
(0.858) 		0.126
(0.39) 		0.0138
(0.114) 		0.469
(0.797) 		0.0735
(0.294) 		0.0899
(0.326) 		0.0162
(0.127) 		0.557
(0.872) 		0.495
(0.819) 		0.5
(0.825)
DIP2B 27 (7%) 340 0.431
(0.766) 		0.195
(0.493) 		0.15
(0.432) 		0.03
(0.183) 		0.434
(0.769) 		0.37
(0.699) 		0.147
(0.426) 		0.0947
(0.335) 		0.101
(0.347) 		0.00409
(0.0577)
SMAD2 16 (4%) 351 0.0104
(0.0957) 		0.102
(0.348) 		0.0354
(0.199) 		0.163
(0.444) 		0.486
(0.813) 		0.698
(0.989) 		0.09
(0.326) 		0.285
(0.608) 		0.0885
(0.322) 		0.602
(0.911)
ALG12 7 (2%) 360 0.124
(0.388) 		0.0113
(0.101) 		0.619
(0.925) 		0.858
(1.00) 		0.00697
(0.0781) 		0.101
(0.346) 		0.0788
(0.305) 		0.0952
(0.336)
NR1H3 15 (4%) 352 0.783
(1.00) 		0.197
(0.495) 		0.284
(0.608) 		0.579
(0.891) 		0.0754
(0.298) 		0.319
(0.645) 		0.693
(0.986) 		0.058
(0.257) 		0.0413
(0.214) 		0.0432
(0.22) 		0.208
(0.509) 		0.208
(0.509)
RBM44 13 (4%) 354 0.0755
(0.298) 		0.322
(0.646) 		0.00015
(0.00753) 		0.0348
(0.197) 		0.193
(0.491) 		0.482
(0.81) 		0.0615
(0.266) 		0.132
(0.4) 		0.64
(0.943) 		0.536
(0.856) 		0.15
(0.433) 		0.538
(0.857)
THOC7 10 (3%) 357 0.812
(1.00) 		0.578
(0.891) 		0.712
(1.00) 		0.72
(1.00) 		0.255
(0.572) 		0.0304
(0.184) 		0.00272
(0.0445) 		0.311
(0.635) 		0.468
(0.797) 		0.138
(0.41)
L1TD1 17 (5%) 350 0.0269
(0.171) 		0.112
(0.366) 		0.00839
(0.0859) 		0.0864
(0.319) 		0.54
(0.858) 		0.954
(1.00) 		0.28
(0.604) 		0.139
(0.412) 		0.518
(0.84) 		0.133
(0.403) 		0.218
(0.52) 		0.428
(0.763)
DCLK2 14 (4%) 353 0.00886
(0.0884) 		0.0506
(0.241) 		0.313
(0.638) 		0.512
(0.837) 		0.00556
(0.0705) 		0.479
(0.806) 		0.789
(1.00) 		0.099
(0.342) 		0.807
(1.00) 		0.765
(1.00) 		0.107
(0.359) 		0.951
(1.00)
C14ORF184 6 (2%) 361 0.261
(0.58) 		1
(1.00) 		0.285
(0.608) 		0.966
(1.00) 		0.0189
(0.139) 		0.124
(0.386) 		0.00037
(0.0131) 		0.172
(0.459)
HPS3 20 (5%) 347 0.0987
(0.341) 		0.0101
(0.0946) 		0.197
(0.495) 		0.488
(0.814) 		0.207
(0.507) 		0.384
(0.716) 		0.3
(0.622) 		0.0109
(0.0987) 		0.0705
(0.287) 		0.453
(0.786)
IDH2 17 (5%) 350 0.325
(0.649) 		0.00705
(0.0785) 		0.597
(0.908) 		0.76
(1.00) 		0.679
(0.976) 		0.738
(1.00) 		0.269
(0.591) 		0.0672
(0.28) 		0.0946
(0.335) 		0.0038
(0.0551)
KLK10 7 (2%) 360 0.0175
(0.132) 		0.682
(0.977) 		0.0547
(0.249) 		0.783
(1.00) 		0.306
(0.63) 		0.0569
(0.254) 		0.208
(0.509) 		0.00208
(0.0387) 		0.879
(1.00) 		0.836
(1.00)
PIK3IP1 8 (2%) 359 0.513
(0.837) 		0.395
(0.726) 		0.555
(0.871) 		0.26
(0.579) 		0.00933
(0.0909) 		0.0882
(0.322) 		0.101
(0.347) 		0.0166
(0.129)
HTR2A 19 (5%) 348 0.89
(1.00) 		0.905
(1.00) 		0.0206
(0.147) 		0.183
(0.477) 		0.112
(0.366) 		0.0227
(0.156) 		0.135
(0.406) 		0.145
(0.424) 		0.708
(0.998) 		0.768
(1.00)
EHBP1 22 (6%) 345 0.0985
(0.341) 		0.0515
(0.243) 		0.0867
(0.319) 		0.158
(0.439) 		0.861
(1.00) 		0.854
(1.00) 		0.398
(0.73) 		0.00377
(0.0547) 		0.0767
(0.3) 		0.00233
(0.0408) 		0.257
(0.575) 		0.711
(1)
ATP11B 17 (5%) 350 0.0547
(0.249) 		0.155
(0.439) 		0.0102
(0.0949) 		0.613
(0.919) 		0.0165
(0.128) 		0.345
(0.671) 		0.173
(0.461) 		0.27
(0.592) 		0.473
(0.801) 		0.35
(0.677) 		0.821
(1.00) 		0.227
(0.531)
ASNSD1 9 (2%) 358 0.0976
(0.34) 		0.0522
(0.245) 		0.00061
(0.0183) 		0.0376
(0.206) 		0.896
(1.00) 		0.688
(0.981) 		0.12
(0.382) 		0.29
(0.612) 		0.66
(0.958) 		0.491
(0.816)
TUBE1 11 (3%) 356 1
(1.00) 		0.796
(1.00) 		0.00297
(0.0473) 		0.126
(0.391) 		0.34
(0.667) 		0.487
(0.814) 		0.229
(0.535) 		0.118
(0.379) 		0.0851
(0.317) 		0.00243
(0.0418)
OXSM 10 (3%) 357 0.0968
(0.339) 		0.00966
(0.0926) 		0.12
(0.381) 		0.381
(0.713) 		0.697
(0.989) 		0.915
(1.00) 		0.6
(0.909) 		0.03
(0.183) 		0.588
(0.899) 		0.0574
(0.255)
DDX5 9 (2%) 358 0.211
(0.511) 		0.398
(0.73) 		0.0305
(0.184) 		0.711
(1.00) 		0.407
(0.739) 		0.0467
(0.231) 		0.34
(0.666) 		0.719
(1.00)
PSD 16 (4%) 351 0.099
(0.342) 		0.198
(0.496) 		0.013
(0.11) 		0.0944
(0.335) 		0.312
(0.637) 		0.739
(1.00) 		0.276
(0.599) 		0.0653
(0.276) 		0.202
(0.501) 		0.0315
(0.187) 		0.161
(0.442) 		1
(1.00)
DHRS7 10 (3%) 357 0.0555
(0.25) 		0.633
(0.936) 		0.19
(0.485) 		0.0399
(0.209) 		0.204
(0.504) 		0.048
(0.235) 		0.0628
(0.27) 		0.687
(0.98)
SNAI2 10 (3%) 357 0.22
(0.522) 		1
(1.00) 		0.00999
(0.0942) 		0.459
(0.791) 		0.119
(0.381) 		0.358
(0.686) 		0.0491
(0.237) 		0.177
(0.467)
DDX43 11 (3%) 356 0.023
(0.157) 		0.0973
(0.34) 		0.0332
(0.192) 		0.094
(0.334) 		0.102
(0.348) 		0.201
(0.499) 		0.408
(0.74) 		0.159
(0.44) 		0.242
(0.556) 		0.263
(0.583)
HIST1H1T 9 (2%) 358 0.794
(1.00) 		0.913
(1.00) 		0.596
(0.907) 		0.554
(0.871) 		0.0295
(0.181) 		0.0173
(0.131) 		0.204
(0.504) 		0.26
(0.58) 		0.78
(1.00) 		0.537
(0.857)
RAG1AP1 6 (2%) 361 0.817
(1.00) 		1
(1.00) 		0.00513
(0.0672) 		0.334
(0.659) 		0.529
(0.851) 		0.148
(0.428) 		0.453
(0.786) 		0.0113
(0.101)
SNTN 6 (2%) 361 0.723
(1.00) 		0.246
(0.561) 		0.0102
(0.0949) 		0.00619
(0.0739) 		0.162
(0.443) 		0.122
(0.384) 		0.29
(0.612) 		0.485
(0.812)
SLC28A2 13 (4%) 354 0.0344
(0.196) 		0.541
(0.858) 		0.601
(0.91) 		0.985
(1.00) 		0.029
(0.179) 		0.248
(0.564) 		0.0653
(0.276) 		0.0782
(0.303)
FIGNL1 16 (4%) 351 0.0982
(0.341) 		0.812
(1.00) 		0.0149
(0.12) 		0.393
(0.724) 		0.204
(0.504) 		0.302
(0.625) 		0.0965
(0.338) 		0.656
(0.954) 		0.627
(0.932) 		0.00039
(0.0137)
EFHC2 15 (4%) 352 0.285
(0.608) 		0.0392
(0.207) 		0.113
(0.369) 		0.809
(1.00) 		0.245
(0.559) 		0.791
(1.00) 		0.369
(0.698) 		0.0135
(0.113) 		0.0843
(0.315) 		0.587
(0.898) 		0.581
(0.891) 		0.639
(0.941)
SCLT1 18 (5%) 349 0.0771
(0.301) 		0.0666
(0.279) 		0.00492
(0.0654) 		0.772
(1.00) 		0.0951
(0.336) 		0.738
(1.00) 		0.196
(0.495) 		0.102
(0.349) 		0.649
(0.95) 		0.00738
(0.0805) 		0.378
(0.709) 		0.678
(0.975)
RASAL2 15 (4%) 352 0.187
(0.483) 		0.362
(0.69) 		0.0453
(0.226) 		0.821
(1.00) 		0.0267
(0.171) 		0.587
(0.898) 		0.387
(0.718) 		0.265
(0.585) 		0.599
(0.909) 		0.448
(0.784)
GMCL1 10 (3%) 357 0.896
(1.00) 		0.397
(0.729) 		0.61
(0.918) 		0.573
(0.887) 		0.0377
(0.206) 		0.0208
(0.148) 		0.321
(0.646) 		0.789
(1.00) 		0.266
(0.586) 		0.982
(1.00)
GFI1 10 (3%) 357 0.0525
(0.245) 		0.0384
(0.206) 		0.899
(1.00) 		0.795
(1.00) 		0.0737
(0.294) 		0.953
(1.00) 		0.812
(1.00) 		0.0198
(0.143) 		0.977
(1.00) 		0.194
(0.492)
NUP188 19 (5%) 348 0.408
(0.74) 		0.516
(0.839) 		0.0128
(0.109) 		0.209
(0.51) 		0.308
(0.632) 		0.753
(1.00) 		0.383
(0.715) 		0.0824
(0.311) 		0.273
(0.596) 		0.00809
(0.0843) 		0.281
(0.607) 		0.892
(1.00)
SLC9A10 18 (5%) 349 0.784
(1.00) 		0.58
(0.891) 		0.00483
(0.0646) 		0.147
(0.427) 		0.0204
(0.146) 		0.148
(0.428) 		0.357
(0.686) 		0.214
(0.516) 		0.39
(0.72) 		0.415
(0.748) 		0.456
(0.788) 		0.905
(1.00)
TOB1 6 (2%) 361 0.135
(0.406) 		0.379
(0.71) 		0.0873
(0.32) 		0.749
(1.00) 		0.00209
(0.0387) 		0.0522
(0.245) 		0.00532
(0.0686) 		0.512
(0.837)
RPS6KA3 13 (4%) 354 0.156
(0.439) 		0.198
(0.496) 		0.0403
(0.211) 		0.128
(0.394) 		0.764
(1.00) 		0.294
(0.616) 		0.14
(0.413) 		0.0315
(0.187) 		0.109
(0.363) 		0.306
(0.63)
ERBB3 26 (7%) 341 0.291
(0.613) 		0.128
(0.394) 		0.00076
(0.0208) 		0.0385
(0.206) 		0.649
(0.95) 		0.45
(0.786) 		0.0735
(0.294) 		0.23
(0.536) 		0.331
(0.656) 		0.247
(0.563)
MBTD1 9 (2%) 358 0.288
(0.609) 		0.294
(0.616) 		0.555
(0.871) 		0.769
(1.00) 		0.00606
(0.0733) 		0.00682
(0.0772) 		0.0874
(0.32) 		0.177
(0.466) 		0.279
(0.604) 		0.545
(0.861)
IL12RB2 14 (4%) 353 0.0754
(0.298) 		0.856
(1.00) 		0.00217
(0.0394) 		0.293
(0.616) 		0.491
(0.816) 		0.992
(1.00) 		0.274
(0.597) 		0.281
(0.606) 		0.31
(0.634) 		0.128
(0.395) 		0.0065
(0.0754) 		0.491
(0.816)
GLI2 20 (5%) 347 0.247
(0.562) 		0.0901
(0.326) 		0.488
(0.814) 		0.721
(1.00) 		0.00172
(0.0345) 		0.00012
(0.00654) 		0.101
(0.345) 		0.0729
(0.292) 		0.97
(1.00) 		0.922
(1.00)
GTF2B 11 (3%) 356 0.112
(0.367) 		0.56
(0.875) 		1
(1.00) 		0.631
(0.934) 		0.03
(0.183) 		0.401
(0.733) 		0.027
(0.171) 		0.244
(0.559)
TMEM169 13 (4%) 354 0.441
(0.778) 		0.676
(0.974) 		0.602
(0.911) 		0.781
(1.00) 		0.077
(0.3) 		0.0453
(0.226) 		0.0119
(0.104) 		0.0537
(0.247) 		0.338
(0.665) 		0.96
(1.00)
PIK3C2A 14 (4%) 353 0.199
(0.497) 		1
(1.00) 		0.711
(1) 		0.0994
(0.342) 		0.146
(0.425) 		0.00359
(0.0532) 		0.0329
(0.191) 		0.112
(0.367) 		0.0909
(0.328) 		0.237
(0.548)
KCNS3 19 (5%) 348 0.345
(0.671) 		1
(1.00) 		0.0929
(0.333) 		0.218
(0.52) 		0.235
(0.545) 		0.732
(1.00) 		0.493
(0.817) 		0.425
(0.76) 		0.0344
(0.196) 		0.044
(0.223) 		0.968
(1.00) 		0.444
(0.781)
TRPM7 28 (8%) 339 0.0277
(0.174) 		0.109
(0.363) 		0.00995
(0.094) 		0.13
(0.397) 		0.129
(0.396) 		0.497
(0.823) 		0.199
(0.497) 		0.109
(0.362) 		0.268
(0.589) 		0.0577
(0.256) 		0.122
(0.384) 		0.263
(0.583)
CSNK1D 14 (4%) 353 0.286
(0.608) 		0.0374
(0.205) 		0.149
(0.429) 		0.339
(0.665) 		0.121
(0.383) 		0.657
(0.955) 		0.273
(0.595) 		0.0144
(0.117) 		0.228
(0.534) 		0.424
(0.759) 		0.361
(0.69) 		0.798
(1.00)
C12ORF10 4 (1%) 363 0.464
(0.795) 		0.0359
(0.201) 		0.467
(0.796) 		0.0154
(0.123) 		0.195
(0.493) 		0.16
(0.441) 		0.0611
(0.265) 		0.202
(0.501)
CYP4X1 5 (1%) 362 0.249
(0.565) 		0.199
(0.497) 		1
(1.00) 		0.0112
(0.1) 		0.0195
(0.141) 		0.17
(0.455) 		0.196
(0.494) 		0.149
(0.431)
SYNCRIP 10 (3%) 357 0.9
(1.00) 		0.0331
(0.192) 		1
(1.00) 		0.535
(0.856) 		0.204
(0.504) 		0.215
(0.516) 		0.135
(0.406) 		0.347
(0.674) 		0.0957
(0.337) 		0.0415
(0.215)
ENPEP 21 (6%) 346 0.0349
(0.197) 		0.367
(0.697) 		0.0169
(0.129) 		0.0714
(0.289) 		0.858
(1.00) 		0.356
(0.684) 		0.173
(0.461) 		0.0862
(0.318) 		0.784
(1.00) 		0.496
(0.822) 		0.863
(1.00) 		0.745
(1.00)
CCAR1 18 (5%) 349 0.0687
(0.282) 		0.109
(0.363) 		0.0411
(0.213) 		0.0274
(0.173) 		0.286
(0.608) 		0.235
(0.545) 		0.529
(0.851) 		0.288
(0.61) 		0.39
(0.721) 		0.847
(1.00) 		0.384
(0.715) 		0.673
(0.971)
GTF2IRD2 6 (2%) 361 0.105
(0.354) 		0.514
(0.838) 		0.0017
(0.0344) 		0.433
(0.768) 		0.0708
(0.287) 		0.00535
(0.0688) 		0.104
(0.352) 		0.538
(0.857)
AMOT 13 (4%) 354 0.00018
(0.00839) 		0.211
(0.512) 		0.813
(1.00) 		0.394
(0.725) 		0.151
(0.433) 		0.00403
(0.057) 		0.481
(0.809) 		0.928
(1.00)
MARK1 25 (7%) 342 0.00803
(0.0841) 		0.11
(0.364) 		0.0257
(0.167) 		0.426
(0.761) 		0.487
(0.814) 		0.462
(0.793) 		0.525
(0.847) 		0.346
(0.673) 		0.561
(0.876) 		0.629
(0.933) 		0.928
(1.00) 		0.678
(0.975)
CCR2 7 (2%) 360 0.381
(0.712) 		1
(1.00) 		0.2
(0.499) 		0.82
(1.00) 		0.0223
(0.155) 		0.104
(0.353) 		0.0342
(0.196) 		0.402
(0.734)
NUP160 11 (3%) 356 0.0535
(0.247) 		0.451
(0.786) 		0.0226
(0.155) 		0.795
(1.00) 		0.638
(0.94) 		0.364
(0.693) 		0.412
(0.746) 		0.0359
(0.201) 		0.494
(0.818) 		0.0618
(0.267)
ZNF384 9 (2%) 358 0.336
(0.662) 		0.437
(0.772) 		0.0504
(0.241) 		0.322
(0.646) 		0.0759
(0.299) 		0.0324
(0.19) 		0.331
(0.656) 		0.0111
(0.0999) 		0.956
(1.00) 		0.834
(1.00)
BAG4 8 (2%) 359 0.00656
(0.0758) 		0.38
(0.712) 		1
(1.00) 		0.467
(0.796) 		0.269
(0.591) 		0.0313
(0.187) 		0.528
(0.85) 		0.32
(0.646)
USP25 19 (5%) 348 0.752
(1.00) 		0.863
(1.00) 		0.543
(0.859) 		0.735
(1.00) 		0.0807
(0.309) 		0.00165
(0.0339) 		0.0129
(0.11) 		0.419
(0.753) 		0.713
(1.00) 		0.342
(0.668)
NCOA7 15 (4%) 352 0.0546
(0.249) 		0.0381
(0.206) 		0.114
(0.371) 		1
(1.00) 		0.277
(0.601) 		0.845
(1.00) 		0.143
(0.419) 		0.00332
(0.0508) 		0.0553
(0.25) 		0.0694
(0.284) 		0.747
(1.00) 		0.86
(1.00)
LRRC23 9 (2%) 358 0.38
(0.711) 		0.633
(0.936) 		0.277
(0.601) 		0.618
(0.924) 		0.0447
(0.225) 		0.0226
(0.155) 		0.143
(0.419) 		0.229
(0.534) 		0.625
(0.931) 		0.8
(1.00)
CNTNAP5 40 (11%) 327 0.0762
(0.299) 		0.322
(0.646) 		0.0403
(0.211) 		0.643
(0.944) 		0.752
(1.00) 		0.503
(0.828) 		0.0838
(0.314) 		0.00256
(0.0431) 		0.0832
(0.313) 		0.211
(0.511) 		0.099
(0.342) 		0.276
(0.599)
MYH1 32 (9%) 335 0.0282
(0.176) 		0.561
(0.875) 		0.186
(0.481) 		0.804
(1.00) 		0.381
(0.712) 		0.439
(0.775) 		0.255
(0.572) 		0.0212
(0.149) 		0.643
(0.945) 		0.0727
(0.292) 		0.546
(0.862) 		0.581
(0.891)
ANKRD30A 28 (8%) 339 0.11
(0.363) 		0.716
(1.00) 		0.12
(0.381) 		0.11
(0.364) 		0.00618
(0.0738) 		0.0002
(0.00899) 		0.0608
(0.265) 		0.0825
(0.312) 		0.831
(1.00) 		0.534
(0.855)
PTPRD 32 (9%) 335 0.0563
(0.252) 		0.158
(0.439) 		0.113
(0.368) 		0.376
(0.705) 		0.0522
(0.245) 		0.698
(0.989) 		0.691
(0.983) 		0.0108
(0.0981) 		0.11
(0.364) 		0.00149
(0.032) 		0.583
(0.894) 		0.0831
(0.313)
FUBP3 9 (2%) 358 0.00069
(0.0196) 		0.137
(0.409) 		0.304
(0.627) 		0.434
(0.769) 		0.0506
(0.241) 		0.0169
(0.129) 		0.0837
(0.314) 		0.0962
(0.338)
SYT1 13 (4%) 354 0.0241
(0.161) 		0.808
(1.00) 		0.206
(0.507) 		0.694
(0.987) 		0.138
(0.409) 		0.0987
(0.341) 		0.032
(0.188) 		0.426
(0.761)
TNPO1 16 (4%) 351 0.00776
(0.0824) 		0.112
(0.367) 		0.00223
(0.0399) 		0.541
(0.858) 		1
(1.00) 		0.332
(0.657) 		0.688
(0.981) 		0.0889
(0.323) 		0.341
(0.667) 		0.782
(1.00) 		0.28
(0.605) 		0.607
(0.915)
CLCNKA 10 (3%) 357 0.136
(0.409) 		0.527
(0.849) 		0.814
(1.00) 		0.991
(1.00) 		0.0249
(0.164) 		0.0048
(0.0643) 		0.245
(0.56) 		0.15
(0.432) 		0.775
(1.00) 		0.952
(1.00)
INTS4 18 (5%) 349 0.422
(0.756) 		0.58
(0.891) 		0.0647
(0.274) 		0.093
(0.333) 		0.0307
(0.185) 		0.0381
(0.206) 		0.232
(0.539) 		0.0533
(0.247) 		0.214
(0.515) 		0.627
(0.932)
PRKAA2 12 (3%) 355 0.221
(0.524) 		0.513
(0.837) 		0.0064
(0.0749) 		0.136
(0.408) 		0.0476
(0.234) 		0.743
(1.00) 		0.0809
(0.309) 		0.846
(1.00) 		0.563
(0.877) 		0.125
(0.39) 		0.153
(0.436) 		0.534
(0.855)
CHRM2 23 (6%) 344 0.729
(1.00) 		0.111
(0.365) 		0.00091
(0.0234) 		0.197
(0.495) 		0.502
(0.827) 		0.142
(0.418) 		0.0495
(0.239) 		0.1
(0.344) 		0.727
(1.00) 		0.165
(0.447) 		0.474
(0.802) 		0.235
(0.545)
GOLGB1 38 (10%) 329 0.00288
(0.0463) 		0.0531
(0.247) 		0.0136
(0.113) 		0.209
(0.51) 		0.188
(0.484) 		0.645
(0.947) 		0.372
(0.701) 		0.0516
(0.244) 		0.228
(0.534) 		0.0711
(0.288) 		0.637
(0.94) 		0.726
(1.00)
ADK 7 (2%) 360 0.125
(0.389) 		0.117
(0.377) 		0.894
(1.00) 		0.209
(0.509) 		0.00826
(0.0852) 		0.473
(0.801) 		0.028
(0.175) 		0.706
(0.996)
IKZF4 13 (4%) 354 0.922
(1.00) 		0.753
(1.00) 		0.869
(1.00) 		0.33
(0.655) 		0.121
(0.383) 		0.0236
(0.159) 		0.0477
(0.234) 		0.459
(0.791) 		0.955
(1.00) 		1
(1.00)
N4BP2 24 (7%) 343 0.0577
(0.256) 		0.319
(0.646) 		0.00708
(0.0787) 		0.145
(0.423) 		0.201
(0.5) 		0.257
(0.575) 		0.47
(0.799) 		0.049
(0.237) 		0.296
(0.617) 		0.236
(0.546) 		0.221
(0.523) 		0.297
(0.619)
GPR141 11 (3%) 356 0.0536
(0.247) 		0.0389
(0.207) 		0.112
(0.367) 		0.903
(1.00) 		0.0759
(0.298) 		0.194
(0.492) 		0.738
(1.00) 		0.00141
(0.0311) 		0.623
(0.93) 		0.108
(0.362) 		0.126
(0.39) 		0.489
(0.815)
ATP6V1D 6 (2%) 361 0.724
(1.00) 		0.446
(0.782) 		0.287
(0.608) 		0.976
(1.00) 		0.0383
(0.206) 		0.124
(0.388) 		0.00358
(0.0531) 		0.498
(0.823)
ABCB4 22 (6%) 345 0.324
(0.648) 		0.369
(0.698) 		0.00019
(0.0087) 		0.0729
(0.292) 		0.534
(0.855) 		0.41
(0.743) 		0.0702
(0.286) 		0.128
(0.393) 		0.268
(0.589) 		0.176
(0.466) 		0.00473
(0.0638) 		0.315
(0.641)
AXIN2 21 (6%) 346 0.558
(0.873) 		0.562
(0.876) 		0.003
(0.0476) 		0.283
(0.608) 		0.69
(0.982) 		0.359
(0.688) 		0.135
(0.406) 		0.00624
(0.0742) 		0.118
(0.379) 		0.219
(0.521) 		0.623
(0.93) 		0.103
(0.351)
LDHA 10 (3%) 357 0.638
(0.94) 		0.597
(0.907) 		0.154
(0.437) 		0.0942
(0.335) 		0.506
(0.832) 		0.373
(0.702) 		0.0101
(0.0945) 		0.0232
(0.158) 		0.0941
(0.335) 		0.313
(0.638)
RCSD1 14 (4%) 353 0.581
(0.891) 		0.158
(0.439) 		0.629
(0.933) 		0.54
(0.858) 		0.93
(1.00) 		0.637
(0.939) 		0.0568
(0.254) 		0.0184
(0.136) 		0.0661
(0.278) 		0.0428
(0.219) 		0.318
(0.644) 		0.556
(0.871)
PPIG 12 (3%) 355 0.0743
(0.295) 		0.0682
(0.282) 		0.00174
(0.0346) 		0.795
(1.00) 		0.12
(0.382) 		0.094
(0.334) 		0.31
(0.635) 		0.0146
(0.118) 		0.355
(0.683) 		0.101
(0.347) 		0.0659
(0.278) 		0.575
(0.889)
FBXO21 6 (2%) 361 0.0315
(0.187) 		0.211
(0.512) 		0.138
(0.41) 		0.54
(0.858) 		0.183
(0.478) 		0.0535
(0.247) 		0.412
(0.745) 		0.00085
(0.0223)
SLFN12L 8 (2%) 359 0.286
(0.608) 		0.453
(0.786) 		0.878
(1.00) 		0.0239
(0.16) 		0.11
(0.364) 		0.954
(1.00) 		1
(1.00) 		0.0203
(0.145) 		0.71
(0.999) 		0.654
(0.952)
RBM12 12 (3%) 355 0.0152
(0.122) 		0.161
(0.442) 		0.316
(0.642) 		0.483
(0.811) 		0.0401
(0.21) 		0.0896
(0.325) 		0.267
(0.588) 		0.479
(0.807) 		0.631
(0.934) 		0.698
(0.989)
RTP3 5 (1%) 362 0.117
(0.376) 		0.534
(0.855) 		0.0872
(0.32) 		0.0418
(0.216) 		0.034
(0.195) 		0.151
(0.433) 		0.551
(0.869) 		0.622
(0.928)
RANBP17 10 (3%) 357 0.122
(0.384) 		0.436
(0.772) 		0.0754
(0.298) 		0.736
(1.00) 		0.176
(0.466) 		0.0282
(0.176) 		0.0875
(0.32) 		0.182
(0.475) 		0.0124
(0.107) 		0.697
(0.989)
FAHD2A 6 (2%) 361 0.133
(0.404) 		0.136
(0.407) 		0.0533
(0.247) 		0.266
(0.586) 		0.387
(0.718) 		0.0271
(0.171) 		0.0119
(0.104) 		0.615
(0.921) 		0.126
(0.391) 		0.952
(1.00)
SPANXN2 8 (2%) 359 0.055
(0.25) 		0.0382
(0.206) 		0.385
(0.716) 		0.444
(0.781) 		0.108
(0.362) 		0.282
(0.607) 		0.622
(0.929) 		0.0121
(0.105) 		0.0581
(0.257) 		0.331
(0.656)
GPR75 8 (2%) 359 0.235
(0.544) 		0.509
(0.835) 		0.133
(0.404) 		0.494
(0.819) 		0.194
(0.492) 		0.0551
(0.25) 		0.0318
(0.188) 		0.0253
(0.166)
DOCK10 25 (7%) 342 0.129
(0.396) 		0.0454
(0.227) 		0.0145
(0.118) 		0.512
(0.837) 		0.836
(1.00) 		0.653
(0.952) 		0.572
(0.887) 		0.156
(0.439) 		0.281
(0.606) 		0.644
(0.946) 		0.725
(1.00) 		0.514
(0.837)
CHEK2 10 (3%) 357 0.0878
(0.321) 		0.138
(0.411) 		0.001
(0.025) 		0.166
(0.449) 		0.469
(0.797) 		0.0433
(0.221) 		0.496
(0.821) 		0.0701
(0.286)
ALDH2 11 (3%) 356 0.0891
(0.324) 		0.903
(1.00) 		0.479
(0.807) 		0.345
(0.671) 		0.164
(0.446) 		0.00657
(0.0758) 		0.461
(0.792) 		0.00175
(0.0347)
AIFM1 11 (3%) 356 0.3
(0.623) 		0.561
(0.876) 		0.315
(0.64) 		0.815
(1.00) 		0.213
(0.515) 		0.00634
(0.0746) 		0.0378
(0.206) 		0.621
(0.927)
NOVA1 14 (4%) 353 0.678
(0.975) 		0.6
(0.91) 		0.199
(0.497) 		0.261
(0.581) 		0.767
(1.00) 		0.765
(1.00) 		0.273
(0.596) 		0.0286
(0.178) 		0.377
(0.707) 		0.0201
(0.144) 		0.0805
(0.308) 		0.601
(0.91)
NIPA2 7 (2%) 360 0.24
(0.553) 		0.196
(0.495) 		0.0796
(0.306) 		0.112
(0.367) 		0.683
(0.977) 		0.591
(0.903) 		0.0544
(0.249) 		0.0493
(0.238) 		0.0668
(0.279) 		0.00097
(0.0244)
REXO4 5 (1%) 362 0.0321
(0.188) 		0.11
(0.364) 		0.254
(0.571) 		0.447
(0.783) 		0.369
(0.698) 		0.0461
(0.229) 		0.577
(0.891) 		0.244
(0.557)
CXORF38 5 (1%) 362 0.25
(0.566) 		0.196
(0.495) 		0.374
(0.704) 		0.0973
(0.34) 		0.00321
(0.0496) 		0.127
(0.393) 		0.0461
(0.229) 		0.076
(0.299)
BST2 6 (2%) 361 0.0119
(0.104) 		0.196
(0.494) 		0.287
(0.608) 		0.283
(0.608) 		0.0939
(0.334) 		0.0728
(0.292) 		0.00537
(0.069) 		0.222
(0.525)
GPR115 18 (5%) 349 0.0539
(0.248) 		0.039
(0.207) 		0.023
(0.157) 		0.709
(0.999) 		0.543
(0.859) 		0.611
(0.919) 		0.566
(0.88) 		0.103
(0.351) 		0.499
(0.824) 		0.531
(0.852) 		0.153
(0.437) 		0.542
(0.859)
EXD2 10 (3%) 357 0.027
(0.171) 		0.485
(0.813) 		0.139
(0.412) 		0.669
(0.966) 		0.574
(0.888) 		0.0224
(0.155) 		0.103
(0.352) 		0.528
(0.85) 		0.955
(1.00) 		0.332
(0.657)
SPANXC 4 (1%) 363 0.466
(0.796) 		0.11
(0.364) 		0.342
(0.668) 		0.716
(1.00) 		0.0204
(0.146) 		0.182
(0.475) 		0.0723
(0.291) 		0.00043
(0.0146)
HORMAD1 13 (4%) 354 0.0975
(0.34) 		0.369
(0.698) 		0.502
(0.827) 		0.852
(1.00) 		0.34
(0.666) 		0.00083
(0.0221) 		0.382
(0.714) 		0.0368
(0.204) 		0.0848
(0.316) 		0.0516
(0.244)
OR4D2 4 (1%) 363 0.465
(0.795) 		1
(1.00) 		0.295
(0.617) 		0.533
(0.855) 		0.0449
(0.225) 		0.0852
(0.317) 		0.0613
(0.266) 		0.0258
(0.167)
PFN4 6 (2%) 361 0.135
(0.406) 		0.0823
(0.311) 		1
(1.00) 		0.0605
(0.264) 		0.0289
(0.179) 		0.0176
(0.132) 		0.0865
(0.319) 		0.155
(0.438)
MUC7 9 (2%) 358 0.211
(0.512) 		0.156
(0.439) 		0.764
(1.00) 		0.0616
(0.267) 		0.0471
(0.232) 		0.0219
(0.153) 		0.332
(0.657) 		0.217
(0.518) 		0.934
(1.00) 		0.829
(1.00)
BCHE 25 (7%) 342 0.0511
(0.243) 		0.0433
(0.221) 		0.0803
(0.308) 		0.465
(0.795) 		0.351
(0.679) 		0.797
(1.00) 		0.295
(0.616) 		0.0397
(0.209) 		0.357
(0.685) 		0.0967
(0.339) 		0.391
(0.721) 		0.486
(0.813)
TM9SF2 10 (3%) 357 0.0225
(0.155) 		0.227
(0.532) 		0.114
(0.372) 		0.347
(0.674) 		0.369
(0.698) 		0.0492
(0.238) 		0.164
(0.445) 		0.541
(0.858) 		0.0919
(0.331) 		0.858
(1.00)
ART5 9 (2%) 358 0.0382
(0.206) 		0.0771
(0.301) 		0.279
(0.604) 		0.714
(1.00) 		0.0223
(0.155) 		0.0737
(0.294) 		0.336
(0.662) 		0.0526
(0.245) 		0.151
(0.434) 		0.175
(0.464)
PHF1 6 (2%) 361 0.215
(0.516) 		0.681
(0.977) 		1
(1.00) 		0.166
(0.449) 		0.0704
(0.286) 		0.0518
(0.244) 		0.00498
(0.0659) 		0.113
(0.369) 		0.00606
(0.0733) 		0.539
(0.858)
ABI3BP 21 (6%) 346 0.222
(0.525) 		0.518
(0.84) 		0.696
(0.988) 		0.0468
(0.231) 		0.0285
(0.177) 		0.884
(1.00) 		0.557
(0.872) 		0.407
(0.739) 		0.358
(0.687) 		0.3
(0.622) 		0.139
(0.411) 		0.852
(1.00)
ERBB2IP 15 (4%) 352 0.0521
(0.245) 		0.198
(0.496) 		0.00524
(0.0682) 		0.0449
(0.225) 		0.134
(0.405) 		0.892
(1.00) 		0.113
(0.369) 		0.139
(0.411) 		0.377
(0.708) 		0.742
(1.00) 		0.154
(0.438) 		0.557
(0.872)
POLDIP3 5 (1%) 362 0.0626
(0.269) 		0.364
(0.693) 		0.273
(0.596) 		0.477
(0.805) 		0.00226
(0.0403) 		0.747
(1.00) 		0.0135
(0.113)
ZNF83 17 (5%) 350 0.0346
(0.196) 		0.11
(0.364) 		0.00054
(0.0168) 		0.0854
(0.317) 		0.523
(0.846) 		0.265
(0.585) 		0.16
(0.441) 		0.141
(0.415) 		0.0554
(0.25) 		0.45
(0.786) 		0.152
(0.434) 		0.102
(0.349)
TMEM50B 6 (2%) 361 0.261
(0.58) 		0.00834
(0.0857) 		0.0658
(0.277) 		0.891
(1.00) 		0.00583
(0.0721) 		0.0673
(0.28) 		0.175
(0.464) 		0.702
(0.993) 		0.417
(0.751) 		0.588
(0.899)
C19ORF66 4 (1%) 363 0.0631
(0.27) 		0.111
(0.365) 		0.0646
(0.274) 		0.0272
(0.172) 		0.157
(0.439) 		0.00998
(0.0941)
HELQ 18 (5%) 349 0.158
(0.439) 		0.197
(0.495) 		0.0107
(0.0976) 		1
(1.00) 		0.732
(1.00) 		0.349
(0.676) 		0.773
(1.00) 		0.192
(0.489) 		0.303
(0.625) 		0.00517
(0.0674) 		0.65
(0.951) 		0.314
(0.639)
ZNF620 8 (2%) 359 0.00605
(0.0733) 		0.859
(1.00) 		0.596
(0.907) 		0.776
(1.00) 		0.0185
(0.137) 		0.0776
(0.302) 		0.19
(0.487) 		0.812
(1.00)
ZNF570 9 (2%) 358 0.143
(0.419) 		0.449
(0.786) 		0.169
(0.455) 		0.629
(0.933) 		0.171
(0.457) 		0.761
(1.00) 		0.269
(0.59) 		0.0216
(0.151) 		0.142
(0.417) 		0.00312
(0.0486)
C1ORF35 4 (1%) 363 0.0639
(0.272) 		0.21
(0.51) 		0.341
(0.667) 		1
(1.00) 		0.0464
(0.23) 		0.0438
(0.222) 		0.0725
(0.291) 		0.25
(0.566)
BAI3 43 (12%) 324 0.0292
(0.18) 		0.0579
(0.256) 		0.247
(0.562) 		0.675
(0.973) 		0.155
(0.438) 		0.175
(0.463) 		0.83
(1.00) 		0.0454
(0.227) 		0.129
(0.396) 		0.0853
(0.317) 		0.397
(0.729) 		0.644
(0.945)
WNK3 24 (7%) 343 0.306
(0.629) 		0.11
(0.363) 		0.031
(0.186) 		0.0626
(0.269) 		0.127
(0.393) 		0.218
(0.52) 		0.428
(0.763) 		0.146
(0.425) 		0.18
(0.471) 		0.37
(0.699) 		0.0368
(0.204) 		0.0692
(0.283)
CCDC141 21 (6%) 346 0.0104
(0.0957) 		0.208
(0.509) 		0.303
(0.626) 		0.0175
(0.132) 		0.386
(0.717) 		0.999
(1.00) 		0.747
(1.00) 		0.143
(0.419) 		0.327
(0.651) 		0.557
(0.872)
KIAA0406 14 (4%) 353 0.338
(0.664) 		0.053
(0.246) 		0.203
(0.503) 		0.296
(0.617) 		0.113
(0.369) 		0.935
(1.00) 		0.164
(0.446) 		0.0175
(0.132) 		0.261
(0.581) 		0.00069
(0.0196) 		0.0558
(0.251) 		0.982
(1.00)
SLC2A3 11 (3%) 356 0.112
(0.367) 		0.611
(0.918) 		1
(1.00) 		0.157
(0.439) 		0.0333
(0.192) 		0.0157
(0.124) 		0.411
(0.744) 		0.168
(0.453) 		0.204
(0.504) 		0.939
(1.00)
MTA2 12 (3%) 355 0.0919
(0.331) 		0.0239
(0.16) 		0.0712
(0.288) 		0.137
(0.409) 		0.317
(0.642) 		0.387
(0.718) 		0.426
(0.761) 		0.0352
(0.198) 		0.417
(0.751) 		0.0606
(0.264) 		0.955
(1.00) 		0.699
(0.99)
PAXIP1 16 (4%) 351 0.0975
(0.34) 		0.00972
(0.0928) 		0.113
(0.37) 		0.238
(0.549) 		0.156
(0.439) 		0.252
(0.568) 		0.526
(0.848) 		9e-05
(0.00567) 		0.139
(0.411) 		0.53
(0.852) 		0.406
(0.738) 		0.0539
(0.248)
PSMB8 4 (1%) 363 0.0953
(0.336) 		0.208
(0.509) 		0.68
(0.976) 		0.258
(0.576) 		0.00269
(0.0443) 		0.087
(0.32) 		0.158
(0.439) 		0.0237
(0.159)
TMEM45A 4 (1%) 363 0.336
(0.662) 		0.209
(0.51) 		1
(1.00) 		0.528
(0.85) 		0.0444
(0.224) 		0.0447
(0.225) 		0.0702
(0.286) 		0.419
(0.753) 		0.25
(0.566) 		0.885
(1.00)
PTPN12 17 (5%) 350 0.0548
(0.249) 		0.0607
(0.264) 		7e-05
(0.00484) 		0.0762
(0.299) 		0.447
(0.783) 		0.947
(1.00) 		0.132
(0.402) 		0.00711
(0.079) 		0.234
(0.542) 		0.106
(0.357) 		0.153
(0.436) 		0.537
(0.857)
ZNF180 14 (4%) 353 0.0936
(0.334) 		0.0235
(0.159) 		0.023
(0.157) 		0.635
(0.938) 		1
(1.00) 		0.352
(0.68) 		0.54
(0.858) 		0.308
(0.632) 		0.7
(0.991) 		0.681
(0.977)
PCDH19 14 (4%) 353 0.164
(0.446) 		0.111
(0.365) 		0.00845
(0.0862) 		0.0684
(0.282) 		0.00301
(0.0477) 		0.499
(0.824) 		0.0985
(0.341) 		0.241
(0.554) 		0.299
(0.62) 		0.104
(0.353) 		0.955
(1.00) 		0.185
(0.479)
ZNF619 11 (3%) 356 0.157
(0.439) 		0.195
(0.494) 		0.00016
(0.00786) 		0.0795
(0.306) 		0.19
(0.486) 		0.752
(1.00) 		0.0926
(0.332) 		0.0219
(0.153) 		0.0802
(0.308) 		0.32
(0.646)
WNK1 19 (5%) 348 0.076
(0.299) 		0.0675
(0.28) 		0.0106
(0.0971) 		0.346
(0.673) 		0.237
(0.547) 		0.354
(0.682) 		0.114
(0.37) 		0.00374
(0.0546) 		0.343
(0.669) 		0.457
(0.789)
GTF3C3 15 (4%) 352 0.285
(0.608) 		0.184
(0.478) 		0.0521
(0.245) 		0.695
(0.987) 		0.0483
(0.236) 		0.0464
(0.23) 		0.582
(0.893) 		0.582
(0.893) 		0.0726
(0.291) 		0.747
(1.00)
SLC22A3 12 (3%) 355 0.00605
(0.0733) 		0.178
(0.468) 		1
(1.00) 		0.12
(0.382) 		0.556
(0.871) 		0.372
(0.701) 		0.188
(0.484) 		0.271
(0.594) 		0.00659
(0.076) 		0.539
(0.858)
ZNF605 8 (2%) 359 0.0854
(0.317) 		0.299
(0.62) 		0.554
(0.871) 		0.493
(0.817) 		0.0451
(0.226) 		0.0142
(0.116) 		0.749
(1.00) 		0.523
(0.846) 		0.25
(0.566) 		0.389
(0.719)
PRPH2 10 (3%) 357 0.054
(0.248) 		0.0386
(0.206) 		1
(1.00) 		0.0208
(0.148) 		0.133
(0.403) 		0.989
(1.00) 		0.416
(0.75) 		0.0767
(0.3) 		0.814
(1.00) 		0.272
(0.594)
DLL3 6 (2%) 361 0.0317
(0.187) 		0.461
(0.792) 		0.202
(0.501) 		0.875
(1.00) 		0.32
(0.646) 		0.053
(0.246) 		0.0861
(0.318) 		0.0113
(0.101)
KIFAP3 9 (2%) 358 0.00214
(0.039) 		0.121
(0.383) 		0.155
(0.438) 		0.981
(1.00) 		0.112
(0.367) 		0.127
(0.392) 		0.192
(0.488) 		0.0226
(0.155)
PIK3R4 16 (4%) 351 0.0254
(0.166) 		0.16
(0.441) 		0.067
(0.28) 		0.358
(0.686) 		0.733
(1.00) 		0.716
(1.00) 		0.049
(0.237) 		0.204
(0.503) 		0.673
(0.97) 		0.724
(1.00) 		0.532
(0.853) 		0.215
(0.516)
GAPVD1 22 (6%) 345 0.327
(0.651) 		0.814
(1.00) 		0.0171
(0.13) 		0.15
(0.433) 		0.333
(0.658) 		0.239
(0.55) 		0.105
(0.356) 		0.0193
(0.14) 		0.183
(0.477) 		0.0826
(0.312) 		0.449
(0.785) 		0.889
(1.00)
ZC3H12C 12 (3%) 355 0.0556
(0.251) 		0.0621
(0.268) 		0.00603
(0.0732) 		0.107
(0.359) 		0.0503
(0.241) 		0.741
(1.00) 		0.0224
(0.155) 		0.176
(0.466) 		0.5
(0.825) 		0.89
(1.00)
PRRT2 6 (2%) 361 0.489
(0.815) 		0.381
(0.712) 		0.829
(1.00) 		0.785
(1.00) 		0.121
(0.383) 		0.0246
(0.163) 		0.00764
(0.0818) 		0.12
(0.382)
ZNF691 7 (2%) 360 0.46
(0.791) 		1
(1.00) 		0.542
(0.859) 		0.272
(0.594) 		0.446
(0.782) 		0.158
(0.439) 		0.0468
(0.231) 		0.00231
(0.0406) 		0.532
(0.854) 		0.952
(1.00)
CCDC55 13 (4%) 354 0.0237
(0.159) 		0.0864
(0.319) 		0.135
(0.406) 		0.37
(0.699) 		0.136
(0.408) 		0.16
(0.441) 		0.0317
(0.187) 		0.117
(0.377) 		0.955
(1.00) 		0.538
(0.857)
CSGALNACT1 8 (2%) 359 0.233
(0.541) 		0.435
(0.77) 		0.108
(0.362) 		0.815
(1.00) 		0.0481
(0.235) 		0.0618
(0.267) 		0.0392
(0.207) 		0.247
(0.562)
DBN1 9 (2%) 358 0.38
(0.711) 		0.597
(0.908) 		0.339
(0.665) 		0.862
(1.00) 		0.228
(0.534) 		0.0228
(0.156) 		0.0293
(0.18) 		0.162
(0.443) 		0.899
(1.00) 		0.576
(0.89)
RRAGD 7 (2%) 360 0.757
(1.00) 		0.875
(1.00) 		0.14
(0.413) 		0.0457
(0.227) 		0.0371
(0.205) 		0.056
(0.252) 		0.25
(0.565) 		0.761
(1.00)
ZNF799 6 (2%) 361 1
(1.00) 		1
(1.00) 		0.302
(0.625) 		0.344
(0.67) 		0.351
(0.679) 		0.125
(0.39) 		0.00456
(0.0621) 		0.0328
(0.191)
SKIL 7 (2%) 360 1
(1.00) 		0.896
(1.00) 		0.444
(0.781) 		0.78
(1.00) 		0.0406
(0.211) 		0.0421
(0.217) 		0.0853
(0.317) 		0.499
(0.824)
NUP205 24 (7%) 343 0.676
(0.974) 		0.614
(0.921) 		0.00031
(0.0119) 		0.0375
(0.206) 		0.296
(0.617) 		0.172
(0.459) 		0.0505
(0.241) 		0.181
(0.473) 		0.332
(0.657) 		0.156
(0.439) 		0.765
(1.00) 		0.566
(0.879)
GRB14 9 (2%) 358 0.00852
(0.0867) 		0.0522
(0.245) 		0.286
(0.608) 		0.863
(1.00) 		0.769
(1.00) 		0.321
(0.646) 		0.535
(0.856) 		0.0403
(0.211) 		1
(1.00) 		0.653
(0.952)
NSUN6 8 (2%) 359 0.0059
(0.0725) 		0.138
(0.41) 		0.901
(1.00) 		0.997
(1.00) 		0.104
(0.353) 		0.00818
(0.0848) 		0.191
(0.488) 		0.293
(0.615) 		0.416
(0.75) 		0.103
(0.351)
PPP2R5E 8 (2%) 359 0.0022
(0.0398) 		0.118
(0.378) 		0.146
(0.425) 		0.685
(0.979) 		0.104
(0.353) 		0.293
(0.615) 		0.35
(0.677) 		0.0487
(0.237)
PANK1 7 (2%) 360 0.187
(0.483) 		0.451
(0.786) 		0.00731
(0.0802) 		0.083
(0.313) 		0.555
(0.871) 		0.704
(0.995) 		0.0281
(0.176) 		0.163
(0.444) 		0.173
(0.46) 		0.0592
(0.26)
ADM 6 (2%) 361 0.0114
(0.101) 		0.461
(0.792) 		0.454
(0.786) 		0.281
(0.606) 		0.0821
(0.311) 		0.256
(0.574) 		0.168
(0.453) 		0.0007
(0.0198)
FBXO34 9 (2%) 358 0.0365
(0.203) 		0.226
(0.531) 		0.278
(0.602) 		0.229
(0.535) 		0.0757
(0.298) 		0.0587
(0.259) 		0.191
(0.487) 		0.0202
(0.145)
NCAPD3 25 (7%) 342 0.679
(0.976) 		0.21
(0.511) 		0.00271
(0.0445) 		0.259
(0.577) 		0.73
(1.00) 		0.956
(1.00) 		0.223
(0.526) 		0.108
(0.362) 		0.0108
(0.0978) 		0.186
(0.48) 		0.084
(0.315) 		0.541
(0.858)
THUMPD3 11 (3%) 356 0.0905
(0.327) 		0.0729
(0.292) 		0.0194
(0.141) 		0.421
(0.755) 		0.0122
(0.105) 		0.101
(0.345) 		0.251
(0.567) 		0.0575
(0.256) 		0.418
(0.751) 		0.312
(0.638)
STAU2 10 (3%) 357 0.0533
(0.247) 		0.157
(0.439) 		0.00816
(0.0848) 		0.136
(0.409) 		0.148
(0.429) 		0.367
(0.697) 		0.509
(0.835) 		0.511
(0.836) 		0.346
(0.673) 		0.781
(1.00) 		0.714
(1.00) 		0.0406
(0.211)
DCLRE1A 10 (3%) 357 0.285
(0.608) 		0.0389
(0.207) 		0.0533
(0.247) 		1
(1.00) 		1
(1.00) 		0.157
(0.439) 		0.97
(1.00) 		0.00284
(0.046) 		0.352
(0.68) 		0.127
(0.392) 		0.657
(0.955) 		0.953
(1.00)
VPS52 11 (3%) 356 0.116
(0.375) 		0.0238
(0.16) 		0.0224
(0.155) 		0.516
(0.838) 		0.0876
(0.32) 		0.938
(1.00) 		0.46
(0.792) 		0.276
(0.599) 		0.76
(1.00) 		0.315
(0.64)
ERCC3 19 (5%) 348 0.044
(0.223) 		0.565
(0.879) 		0.0103
(0.0953) 		0.0737
(0.294) 		0.485
(0.813) 		0.949
(1.00) 		0.219
(0.521) 		0.151
(0.434) 		0.297
(0.618) 		0.139
(0.411) 		1
(1.00) 		0.857
(1.00)
NXF3 10 (3%) 357 0.664
(0.962) 		0.112
(0.367) 		0.202
(0.501) 		0.835
(1.00) 		0.125
(0.389) 		0.0387
(0.207) 		0.0162
(0.127) 		0.214
(0.515)
LRIG2 9 (2%) 358 0.00104
(0.0255) 		0.0494
(0.238) 		0.815
(1.00) 		0.0836
(0.314) 		0.116
(0.374) 		0.0989
(0.342) 		0.0663
(0.278) 		0.537
(0.857)
SEC31A 13 (4%) 354 0.209
(0.51) 		0.156
(0.439) 		0.0249
(0.164) 		0.213
(0.514) 		0.774
(1.00) 		0.507
(0.833) 		0.432
(0.768) 		0.0784
(0.304) 		0.554
(0.871) 		0.0994
(0.342) 		0.0312
(0.186) 		0.236
(0.546)
OR5H15 5 (1%) 362 0.666
(0.963) 		0.272
(0.595) 		0.456
(0.788) 		0.825
(1.00) 		0.158
(0.439) 		0.0354
(0.199) 		0.706
(0.996) 		0.0228
(0.156)
ST8SIA6 10 (3%) 357 0.00042
(0.0144) 		0.0682
(0.282) 		0.897
(1.00) 		0.94
(1.00) 		0.0221
(0.153) 		0.0503
(0.241) 		0.226
(0.53) 		0.323
(0.647)
C6ORF222 6 (2%) 361 0.187
(0.483) 		0.453
(0.786) 		0.0115
(0.102) 		0.11
(0.364) 		0.374
(0.704) 		0.95
(1.00) 		0.0828
(0.312) 		0.0581
(0.257) 		0.221
(0.524) 		0.0188
(0.139)
IFNA2 9 (2%) 358 0.287
(0.608) 		0.0379
(0.206) 		0.0371
(0.205) 		1
(1.00) 		0.135
(0.406) 		0.232
(0.538) 		0.802
(1.00) 		0.098
(0.34) 		0.924
(1.00) 		0.459
(0.791)
IL1RL1 14 (4%) 353 0.102
(0.349) 		0.123
(0.385) 		0.418
(0.752) 		0.937
(1.00) 		0.0352
(0.198) 		0.00603
(0.0732) 		0.124
(0.386) 		0.123
(0.386) 		0.298
(0.619) 		0.273
(0.596)
MRPS5 11 (3%) 356 0.0168
(0.129) 		0.835
(1.00) 		0.51
(0.836) 		0.243
(0.556) 		0.204
(0.504) 		0.169
(0.453) 		0.0418
(0.216) 		0.256
(0.574)
CDKL2 11 (3%) 356 0.0976
(0.34) 		0.81
(1.00) 		0.0255
(0.166) 		1
(1.00) 		0.618
(0.924) 		0.0566
(0.253) 		0.408
(0.741) 		0.682
(0.977) 		0.736
(1.00) 		0.00114
(0.0271)
NSUN2 11 (3%) 356 0.21
(0.511) 		0.155
(0.439) 		0.334
(0.659) 		0.0109
(0.0983) 		0.0301
(0.183) 		0.29
(0.612) 		0.399
(0.731) 		0.166
(0.449) 		0.48
(0.807) 		0.818
(1.00)
CCNH 7 (2%) 360 0.126
(0.391) 		0.0258
(0.167) 		0.0016
(0.0332) 		0.182
(0.475) 		0.113
(0.368) 		0.0774
(0.301) 		0.74
(1.00) 		0.38
(0.711) 		0.955
(1.00) 		0.639
(0.941)
TUT1 9 (2%) 358 0.287
(0.608) 		0.453
(0.786) 		0.0188
(0.139) 		0.162
(0.444) 		0.00036
(0.013) 		0.571
(0.885) 		0.112
(0.367) 		0.362
(0.691) 		0.0671
(0.28) 		0.585
(0.895)
TAF6 9 (2%) 358 0.283
(0.608) 		0.0392
(0.207) 		0.635
(0.938) 		0.777
(1.00) 		0.555
(0.871) 		0.121
(0.383) 		0.76
(1.00) 		0.0293
(0.18) 		0.453
(0.786) 		0.537
(0.857)
PTTG1IP 7 (2%) 360 0.124
(0.387) 		0.0726
(0.291) 		0.265
(0.586) 		0.705
(0.995) 		0.133
(0.403) 		0.0404
(0.211) 		0.0283
(0.177) 		0.0631
(0.27)
TMC8 7 (2%) 360 0.00764
(0.0818) 		0.161
(0.442) 		0.627
(0.932) 		0.834
(1.00) 		0.167
(0.451) 		0.0162
(0.127) 		0.0777
(0.302) 		0.0813
(0.31)
EMR3 16 (4%) 351 0.17
(0.455) 		0.0665
(0.279) 		0.017
(0.13) 		0.802
(1.00) 		0.936
(1.00) 		0.962
(1.00) 		0.278
(0.602) 		0.123
(0.385) 		0.0734
(0.293) 		0.0231
(0.157)
NHLRC2 9 (2%) 358 0.286
(0.608) 		0.509
(0.835) 		0.0294
(0.181) 		0.00227
(0.0404) 		0.312
(0.638) 		1
(1.00) 		0.536
(0.856) 		0.0995
(0.342) 		0.243
(0.557) 		0.226
(0.531)
TSHZ1 12 (3%) 355 0.159
(0.439) 		0.197
(0.495) 		0.00574
(0.0716) 		0.438
(0.774) 		0.101
(0.347) 		0.39
(0.72) 		0.22
(0.523) 		0.0239
(0.16) 		0.123
(0.385) 		0.486
(0.814)
PPP1R12A 13 (4%) 354 0.614
(0.92) 		1
(1.00) 		0.599
(0.909) 		0.952
(1.00) 		0.75
(1.00) 		0.0253
(0.165) 		0.0877
(0.321) 		0.479
(0.807) 		0.0213
(0.15) 		0.545
(0.862)
DPF3 5 (1%) 362 0.0321
(0.188) 		0.212
(0.512) 		0.562
(0.876) 		0.987
(1.00) 		0.226
(0.531) 		0.0436
(0.221) 		0.222
(0.524) 		0.0642
(0.273)
CCR8 7 (2%) 360 0.283
(0.608) 		0.0391
(0.207) 		0.878
(1.00) 		0.841
(1.00) 		0.389
(0.719) 		0.445
(0.782) 		0.687
(0.98) 		0.0209
(0.148) 		0.627
(0.932) 		0.514
(0.838) 		0.879
(1.00) 		0.429
(0.764)
SMARCB1 23 (6%) 344 0.731
(1.00) 		0.612
(0.919) 		0.318
(0.645) 		0.699
(0.99) 		0.275
(0.598) 		0.558
(0.873) 		0.00515
(0.0673) 		0.0189
(0.139) 		0.104
(0.353) 		0.0791
(0.305) 		0.458
(0.791) 		0.425
(0.76)
RASGRF2 17 (5%) 350 0.0737
(0.294) 		0.067
(0.28) 		0.0104
(0.0957) 		0.126
(0.39) 		0.0106
(0.0971) 		0.258
(0.576) 		0.413
(0.746) 		0.143
(0.419) 		0.0696
(0.285) 		0.122
(0.385)
ALAS1 9 (2%) 358 0.283
(0.608) 		0.453
(0.786) 		0.0371
(0.205) 		0.626
(0.932) 		0.627
(0.932) 		0.415
(0.748) 		0.742
(1.00) 		0.0663
(0.278) 		0.916
(1.00) 		0.0303
(0.184)
ZNF622 7 (2%) 360 0.382
(0.713) 		0.245
(0.56) 		1
(1.00) 		0.751
(1.00) 		0.048
(0.235) 		0.0169
(0.13) 		0.777
(1.00) 		0.0894
(0.324) 		0.46
(0.791) 		0.64
(0.943)
CNOT10 9 (2%) 358 0.0386
(0.206) 		0.218
(0.521) 		0.0245
(0.163) 		0.225
(0.528) 		0.592
(0.904) 		0.364
(0.694) 		0.53
(0.851) 		0.677
(0.975)
ARHGEF1 13 (4%) 354 0.0688
(0.282) 		0.0519
(0.244) 		0.0406
(0.212) 		0.528
(0.85) 		0.391
(0.721) 		0.307
(0.631) 		0.579
(0.891) 		0.00424
(0.0589) 		0.399
(0.731) 		0.126
(0.391) 		0.084
(0.315) 		0.231
(0.537)
BEND2 23 (6%) 344 0.00225
(0.0402) 		0.00652
(0.0756) 		0.145
(0.423) 		0.441
(0.778) 		0.723
(1.00) 		0.687
(0.98) 		0.855
(1.00) 		0.0577
(0.256) 		0.776
(1.00) 		0.205
(0.506) 		0.191
(0.487) 		0.835
(1.00)
SMARCA1 19 (5%) 348 0.16
(0.441) 		0.207
(0.507) 		0.0001
(0.00587) 		0.0599
(0.262) 		0.719
(1.00) 		0.409
(0.742) 		0.219
(0.521) 		0.0275
(0.173) 		0.0854
(0.317) 		0.343
(0.669) 		0.658
(0.956) 		0.7
(0.991)
CD79A 6 (2%) 361 0.284
(0.608) 		0.0384
(0.206) 		0.138
(0.409) 		0.516
(0.838) 		0.442
(0.779) 		0.87
(1.00) 		0.419
(0.753) 		0.00747
(0.081) 		0.434
(0.769) 		0.0929
(0.333)
TSPAN7 9 (2%) 358 0.0883
(0.322) 		0.138
(0.409) 		0.301
(0.624) 		0.885
(1.00) 		0.268
(0.589) 		0.0129
(0.11) 		0.224
(0.527) 		0.0487
(0.237) 		0.264
(0.584) 		0.584
(0.894)
DOCK7 17 (5%) 350 0.136
(0.408) 		0.111
(0.365) 		0.00148
(0.032) 		0.16
(0.441) 		0.243
(0.557) 		0.863
(1.00) 		0.41
(0.743) 		0.0486
(0.237) 		0.301
(0.624) 		0.269
(0.59)
BRD2 11 (3%) 356 0.0546
(0.249) 		0.154
(0.438) 		0.0173
(0.131) 		0.199
(0.497) 		0.211
(0.511) 		0.696
(0.988) 		0.0536
(0.247) 		0.476
(0.804) 		0.345
(0.672) 		0.012
(0.105)
NTNG1 14 (4%) 353 0.2
(0.499) 		0.094
(0.334) 		0.257
(0.575) 		0.217
(0.518) 		0.0739
(0.295) 		0.119
(0.381) 		0.00224
(0.04) 		0.00382
(0.0552) 		0.879
(1.00) 		0.356
(0.684)
CHMP4C 3 (1%) 364 0.721
(1.00) 		0.511
(0.836) 		0.0791
(0.305) 		0.0319
(0.188) 		0.183
(0.477) 		0.0459
(0.228)
PTPDC1 8 (2%) 359 0.0844
(0.315) 		0.118
(0.379) 		0.556
(0.871) 		0.498
(0.823) 		0.0663
(0.278) 		0.00403
(0.057) 		0.072
(0.29) 		0.0238
(0.16)
SYNJ1 16 (4%) 351 0.00766
(0.0818) 		0.11
(0.364) 		0.00104
(0.0255) 		0.176
(0.465) 		0.124
(0.386) 		0.93
(1.00) 		0.114
(0.37) 		0.142
(0.416) 		0.642
(0.944) 		0.263
(0.583) 		0.542
(0.858) 		0.633
(0.936)
IPPK 9 (2%) 358 0.285
(0.608) 		0.072
(0.29) 		0.0065
(0.0754) 		0.457
(0.789) 		0.266
(0.586) 		0.521
(0.843) 		0.0257
(0.167) 		0.143
(0.419) 		0.776
(1.00) 		0.836
(1.00)
HCLS1 15 (4%) 352 0.142
(0.417) 		0.219
(0.521) 		0.00201
(0.0378) 		0.322
(0.646) 		0.79
(1.00) 		0.46
(0.792) 		0.247
(0.563) 		0.109
(0.363) 		0.169
(0.454) 		0.00831
(0.0856)
SULT1C4 3 (1%) 364 0.187
(0.482) 		0.0381
(0.206) 		0.159
(0.441) 		0.783
(1.00) 		0.0226
(0.155)
TRAF2 7 (2%) 360 0.0805
(0.308) 		0.0308
(0.185) 		0.878
(1.00) 		0.274
(0.598) 		0.134
(0.405) 		0.0296
(0.181) 		0.218
(0.521) 		0.194
(0.492)
KRTAP12-3 3 (1%) 364 0.16
(0.441) 		0.111
(0.365) 		0.791
(1.00) 		0.529
(0.851) 		0.0146
(0.119) 		0.0314
(0.187) 		0.184
(0.478) 		0.684
(0.978)
GATA1 16 (4%) 351 0.00871
(0.0877) 		0.0517
(0.244) 		0.0568
(0.254) 		0.632
(0.935) 		0.928
(1.00) 		0.967
(1.00) 		0.968
(1.00) 		0.0389
(0.207) 		0.181
(0.474) 		0.0548
(0.249) 		0.416
(0.75) 		0.923
(1.00)
CCDC6 11 (3%) 356 0.0254
(0.166) 		0.0391
(0.207) 		0.388
(0.718) 		0.893
(1.00) 		0.331
(0.656) 		0.629
(0.933) 		0.141
(0.415) 		0.704
(0.995)
TAB3 10 (3%) 357 0.898
(1.00) 		0.0254
(0.166) 		0.731
(1.00) 		0.584
(0.894) 		0.232
(0.539) 		0.0074
(0.0805) 		0.0886
(0.322) 		0.382
(0.714) 		0.751
(1.00) 		0.653
(0.952)
ATP6V0A4 11 (3%) 356 0.157
(0.439) 		0.809
(1.00) 		0.00013
(0.00687) 		0.135
(0.407) 		0.279
(0.603) 		0.991
(1.00) 		0.082
(0.311) 		0.0269
(0.171) 		0.0931
(0.333) 		0.193
(0.49)
KIFC2 6 (2%) 361 0.49
(0.815) 		0.877
(1.00) 		1
(1.00) 		0.626
(0.932) 		0.12
(0.382) 		0.0429
(0.22) 		0.00332
(0.0508) 		0.152
(0.435)
EFNB3 8 (2%) 359 0.0326
(0.19) 		0.0831
(0.313) 		0.794
(1.00) 		0.686
(0.979) 		0.0328
(0.191) 		0.566
(0.879) 		0.444
(0.781) 		0.481
(0.809)
CTR9 17 (5%) 350 0.0972
(0.339) 		0.32
(0.646) 		0.0373
(0.205) 		0.0856
(0.317) 		0.0377
(0.206) 		0.59
(0.902) 		0.251
(0.566) 		0.18
(0.471) 		0.674
(0.972) 		0.123
(0.385) 		0.743
(1.00) 		0.211
(0.511)
STK40 7 (2%) 360 0.285
(0.608) 		0.0374
(0.205) 		0.083
(0.313) 		1
(1.00) 		0.372
(0.701) 		0.679
(0.976) 		0.558
(0.873) 		0.0135
(0.113) 		0.359
(0.688) 		0.561
(0.876)
BTBD3 13 (4%) 354 0.0976
(0.34) 		0.538
(0.858) 		0.156
(0.439) 		0.142
(0.418) 		0.279
(0.603) 		0.00164
(0.0337) 		0.00219
(0.0397) 		0.25
(0.565)
SENP8 4 (1%) 363 0.063
(0.27) 		0.461
(0.792) 		0.295
(0.616) 		0.652
(0.951) 		0.0449
(0.225) 		0.0856
(0.317) 		0.00673
(0.0768) 		0.64
(0.942)
ZNF711 10 (3%) 357 0.429
(0.764) 		0.322
(0.646) 		0.349
(0.676) 		0.661
(0.959) 		0.00057
(0.0175) 		0.0274
(0.173) 		0.101
(0.347) 		0.821
(1.00) 		0.955
(1.00) 		0.0813
(0.31)
PRSS48 7 (2%) 360 0.125
(0.389) 		0.162
(0.444) 		0.243
(0.557) 		0.147
(0.427) 		0.0332
(0.192) 		0.369
(0.698) 		0.0259
(0.168) 		0.0791
(0.305) 		0.096
(0.337) 		0.885
(1.00)
MMP7 8 (2%) 359 0.285
(0.608) 		0.0376
(0.206) 		0.0591
(0.26) 		0.686
(0.979) 		0.733
(1.00) 		0.633
(0.936) 		0.13
(0.397) 		0.0334
(0.193) 		0.94
(1.00) 		0.668
(0.965)
SIX5 5 (1%) 362 0.0317
(0.187) 		0.109
(0.362) 		0.168
(0.453) 		0.873
(1.00) 		0.37
(0.698) 		0.00722
(0.0796) 		0.224
(0.527) 		0.245
(0.559)
LEPROTL1 5 (1%) 362 0.0318
(0.188) 		0.629
(0.933) 		0.987
(1.00) 		0.0947
(0.335) 		0.00795
(0.0836) 		0.564
(0.878) 		0.0879
(0.321)
GUCY1A3 22 (6%) 345 0.619
(0.925) 		0.101
(0.346) 		0.0325
(0.19) 		0.573
(0.887) 		0.433
(0.768) 		0.323
(0.647) 		0.0879
(0.321) 		0.269
(0.591) 		0.743
(1.00) 		0.018
(0.134) 		0.82
(1.00) 		0.437
(0.772)
LRRN3 21 (6%) 346 0.0101
(0.0946) 		0.0832
(0.313) 		0.0165
(0.128) 		0.658
(0.956) 		0.875
(1.00) 		0.902
(1.00) 		0.206
(0.506) 		0.219
(0.522) 		0.427
(0.762) 		0.258
(0.576) 		0.656
(0.955) 		0.885
(1.00)
LIX1 9 (2%) 358 0.285
(0.608) 		0.454
(0.786) 		0.0431
(0.22) 		0.516
(0.839) 		0.731
(1.00) 		0.988
(1.00) 		0.593
(0.904) 		0.0332
(0.192) 		0.156
(0.439) 		0.0722
(0.29)
C3ORF63 21 (6%) 346 0.0277
(0.174) 		0.109
(0.362) 		0.11
(0.364) 		1
(1.00) 		0.109
(0.363) 		0.858
(1.00) 		0.781
(1.00) 		0.0961
(0.337) 		0.274
(0.597) 		0.00809
(0.0843)
TRAF3IP3 12 (3%) 355 0.00154
(0.0324) 		0.0235
(0.159) 		0.0648
(0.274) 		0.793
(1.00) 		0.0553
(0.25) 		0.686
(0.979) 		0.628
(0.933) 		0.401
(0.733) 		1
(1.00) 		0.445
(0.782) 		0.379
(0.71) 		1
(1.00)
EPB41L4B 12 (3%) 355 0.285
(0.608) 		0.155
(0.438) 		0.00053
(0.0166) 		0.627
(0.932) 		0.537
(0.857) 		0.279
(0.604) 		0.131
(0.4) 		0.0361
(0.201) 		0.341
(0.667) 		0.342
(0.669)
OLFML1 11 (3%) 356 0.485
(0.813) 		0.217
(0.519) 		0.0109
(0.0987) 		0.683
(0.977) 		0.116
(0.375) 		0.23
(0.536) 		0.0709
(0.287) 		0.109
(0.363) 		0.0209
(0.148) 		0.129
(0.396)
PIGK 10 (3%) 357 0.287
(0.609) 		0.039
(0.207) 		0.22
(0.522) 		0.711
(1) 		0.767
(1.00) 		0.988
(1.00) 		0.53
(0.852) 		0.00622
(0.074) 		0.84
(1.00) 		0.224
(0.527)
TRIB1 7 (2%) 360 0.0814
(0.31) 		0.68
(0.977) 		0.685
(0.979) 		0.77
(1.00) 		0.308
(0.632) 		0.01
(0.0943) 		0.0383
(0.206) 		0.62
(0.926) 		0.78
(1.00) 		0.537
(0.857)
UGT1A9 9 (2%) 358 0.173
(0.461) 		0.32
(0.646) 		0.02
(0.144) 		0.0715
(0.289) 		1
(1.00) 		0.668
(0.965) 		0.035
(0.197) 		0.227
(0.533) 		0.112
(0.367) 		0.201
(0.499)
MBP 6 (2%) 361 0.285
(0.608) 		0.45
(0.786) 		0.0324
(0.189) 		0.296
(0.617) 		0.445
(0.782) 		0.916
(1.00) 		0.42
(0.754) 		0.0595
(0.261) 		0.414
(0.748) 		0.00875
(0.0878)
SAFB 14 (4%) 353 0.0465
(0.23) 		0.812
(1.00) 		0.00908
(0.0894) 		0.609
(0.918) 		0.0525
(0.245) 		0.172
(0.459) 		0.426
(0.761) 		0.187
(0.483) 		0.262
(0.582) 		0.0884
(0.322)
SLC46A3 8 (2%) 359 0.185
(0.48) 		0.797
(1.00) 		0.0385
(0.206) 		0.0381
(0.206) 		0.445
(0.782) 		0.854
(1.00) 		0.156
(0.439) 		0.526
(0.848) 		0.502
(0.827) 		0.81
(1.00)
ZNF124 8 (2%) 359 0.00233
(0.0408) 		0.0809
(0.309) 		0.134
(0.405) 		0.941
(1.00) 		0.0667
(0.279) 		0.0314
(0.187) 		0.193
(0.491) 		0.169
(0.454)
PIWIL1 22 (6%) 345 0.284
(0.608) 		0.45
(0.786) 		0.00093
(0.0238) 		0.0573
(0.255) 		0.199
(0.496) 		0.708
(0.997) 		0.0672
(0.28) 		0.0368
(0.204) 		0.197
(0.495) 		0.0613
(0.266) 		0.445
(0.782) 		0.864
(1.00)
ZNF577 12 (3%) 355 0.052
(0.244) 		0.58
(0.891) 		0.00798
(0.0837) 		0.155
(0.438) 		0.811
(1.00) 		0.914
(1.00) 		0.352
(0.68) 		0.247
(0.562) 		0.309
(0.634) 		0.185
(0.48) 		0.658
(0.956) 		0.0421
(0.217)
DCLRE1C 9 (2%) 358 0.0366
(0.203) 		0.4
(0.732) 		1
(1.00) 		0.847
(1.00) 		0.269
(0.591) 		0.0348
(0.197) 		0.472
(0.801) 		0.239
(0.551)
XPO4 18 (5%) 349 0.285
(0.608) 		1
(1.00) 		0.00446
(0.0612) 		0.0477
(0.234) 		0.931
(1.00) 		0.362
(0.691) 		0.26
(0.578) 		0.146
(0.426) 		0.27
(0.592) 		0.338
(0.664) 		0.114
(0.37) 		0.772
(1.00)
PRKCQ 15 (4%) 352 0.0993
(0.342) 		0.0099
(0.0937) 		0.206
(0.507) 		0.204
(0.504) 		0.0528
(0.246) 		0.872
(1.00) 		0.804
(1.00) 		0.00622
(0.074) 		0.104
(0.353) 		0.357
(0.686) 		0.806
(1.00) 		0.102
(0.348)
CAMK1 7 (2%) 360 0.0812
(0.309) 		0.861
(1.00) 		0.556
(0.871) 		0.402
(0.733) 		0.556
(0.871) 		0.0328
(0.191) 		0.0123
(0.107) 		0.387
(0.718)
ENPP3 9 (2%) 358 0.0367
(0.204) 		0.0831
(0.313) 		0.731
(1.00) 		0.937
(1.00) 		0.384
(0.716) 		0.00384
(0.0554) 		0.0607
(0.264) 		0.111
(0.366)
RELA 9 (2%) 358 0.184
(0.479) 		0.122
(0.384) 		0.814
(1.00) 		0.29
(0.612) 		0.0622
(0.268) 		0.0687
(0.282) 		0.0478
(0.234) 		0.00302
(0.0477)
WDR65 6 (2%) 361 0.0117
(0.103) 		0.462
(0.792) 		0.284
(0.608) 		0.653
(0.952) 		0.319
(0.645) 		0.0331
(0.192) 		0.0872
(0.32) 		0.474
(0.802) 		0.151
(0.433) 		0.489
(0.815)
ESYT1 9 (2%) 358 0.636
(0.939) 		0.0964
(0.338) 		0.54
(0.858) 		0.567
(0.881) 		0.0116
(0.102) 		0.0617
(0.267) 		0.0707
(0.287) 		0.00041
(0.0142) 		0.53
(0.851) 		0.101
(0.346)
TEX11 17 (5%) 350 0.158
(0.439) 		0.197
(0.495) 		0.599
(0.909) 		0.17
(0.456) 		0.287
(0.608) 		0.509
(0.835) 		0.117
(0.378) 		0.152
(0.435) 		0.0272
(0.172) 		0.0027
(0.0445) 		0.58
(0.891) 		0.426
(0.761)
ZNF660 7 (2%) 360 0.00771
(0.082) 		0.12
(0.381) 		0.268
(0.589) 		0.431
(0.766) 		0.165
(0.447) 		0.0161
(0.126) 		0.236
(0.547) 		0.269
(0.59) 		0.153
(0.436) 		0.388
(0.718)
AGTPBP1 17 (5%) 350 0.0349
(0.197) 		0.145
(0.424) 		0.948
(1.00) 		0.0634
(0.271) 		0.324
(0.648) 		0.203
(0.503) 		0.389
(0.72) 		0.046
(0.228) 		0.65
(0.95) 		0.477
(0.805)
ZNF286A 7 (2%) 360 0.00748
(0.081) 		0.0377
(0.206) 		0.507
(0.833) 		0.59
(0.901) 		0.164
(0.446) 		0.748
(1.00) 		0.839
(1.00) 		0.55
(0.867) 		0.955
(1.00) 		0.388
(0.718)
LDLRAD3 5 (1%) 362 0.0316
(0.187) 		0.514
(0.838) 		1
(1.00) 		0.641
(0.943) 		0.0918
(0.33) 		0.0465
(0.23) 		0.15
(0.433) 		0.0527
(0.246)
CCPG1 11 (3%) 356 0.222
(0.525) 		0.321
(0.646) 		0.00319
(0.0493) 		0.0795
(0.306) 		0.0149
(0.12) 		0.136
(0.408) 		0.12
(0.382) 		0.131
(0.399) 		0.403
(0.735) 		0.326
(0.65) 		0.152
(0.435) 		0.699
(0.99)
GCC2 10 (3%) 357 0.287
(0.608) 		0.453
(0.786) 		0.00775
(0.0824) 		0.3
(0.622) 		0.478
(0.806) 		0.956
(1.00) 		0.00811
(0.0844) 		0.08
(0.308) 		0.711
(1.00) 		0.28
(0.605) 		0.231
(0.537) 		0.655
(0.953)
BTBD7 12 (3%) 355 0.114
(0.371) 		0.859
(1.00) 		0.00589
(0.0725) 		0.738
(1.00) 		0.327
(0.652) 		0.29
(0.612) 		0.219
(0.521) 		0.206
(0.507) 		0.0186
(0.138) 		0.087
(0.32)
ITPRIPL1 7 (2%) 360 0.0803
(0.308) 		0.0125
(0.108) 		0.0643
(0.273) 		0.534
(0.855) 		0.0328
(0.191) 		0.0605
(0.264) 		0.865
(1.00) 		0.502
(0.827)
PLCG2 18 (5%) 349 0.274
(0.597) 		0.317
(0.642) 		0.00514
(0.0673) 		0.0222
(0.154) 		0.183
(0.477) 		0.75
(1.00) 		0.371
(0.7) 		0.412
(0.746) 		0.63
(0.933) 		0.546
(0.862)
ZNF416 8 (2%) 359 0.00228
(0.0404) 		0.0797
(0.307) 		0.596
(0.907) 		0.333
(0.659) 		0.0666
(0.279) 		0.259
(0.577) 		0.191
(0.488) 		0.225
(0.529) 		0.00603
(0.0732) 		0.386
(0.718)
CENPA 5 (1%) 362 0.157
(0.439) 		0.198
(0.496) 		0.0321
(0.188) 		0.543
(0.859) 		0.788
(1.00) 		0.145
(0.423) 		0.209
(0.51) 		0.0431
(0.22) 		0.102
(0.348)
OR2F2 7 (2%) 360 0.382
(0.713) 		0.0378
(0.206) 		0.455
(0.787) 		0.866
(1.00) 		0.111
(0.366) 		0.0178
(0.133) 		0.38
(0.711) 		0.0651
(0.275) 		0.217
(0.519) 		0.834
(1.00)
F2R 11 (3%) 356 0.0779
(0.302) 		0.305
(0.628) 		0.187
(0.482) 		0.281
(0.606) 		0.0343
(0.196) 		0.0272
(0.172) 		0.106
(0.357) 		0.37
(0.699)
C17ORF58 3 (1%) 364 0.16
(0.441) 		0.514
(0.838) 		0.0801
(0.308) 		0.0317
(0.187) 		0.253
(0.569) 		0.00665
(0.0763)
IDI1 4 (1%) 363 0.0929
(0.333) 		0.515
(0.838) 		1
(1.00) 		0.0151
(0.121) 		0.391
(0.721) 		0.18
(0.473) 		0.0936
(0.334) 		0.00452
(0.0618)
PHLDB2 18 (5%) 349 0.277
(0.6) 		0.321
(0.646) 		0.0209
(0.148) 		0.0457
(0.227) 		0.252
(0.568) 		0.464
(0.795) 		0.121
(0.383) 		0.569
(0.883) 		0.132
(0.4) 		0.801
(1.00)
TATDN2 9 (2%) 358 0.0753
(0.298) 		0.0674
(0.28) 		0.019
(0.139) 		1
(1.00) 		0.735
(1.00) 		0.651
(0.951) 		0.56
(0.875) 		0.00819
(0.0848) 		0.308
(0.632) 		0.118
(0.38) 		0.658
(0.956) 		0.616
(0.922)
CNGA3 13 (4%) 354 0.0301
(0.183) 		0.0687
(0.282) 		0.00708
(0.0787) 		0.598
(0.909) 		0.0928
(0.333) 		0.415
(0.749) 		0.39
(0.72) 		0.52
(0.842) 		0.101
(0.345) 		0.49
(0.815)
ELANE 7 (2%) 360 0.0792
(0.305) 		0.162
(0.444) 		0.446
(0.782) 		0.71
(0.999) 		0.0335
(0.193) 		0.232
(0.539) 		0.191
(0.487) 		0.0144
(0.118)
SLC26A7 17 (5%) 350 0.313
(0.638) 		0.202
(0.5) 		0.0211
(0.149) 		0.0133
(0.112) 		0.288
(0.61) 		0.826
(1.00) 		0.135
(0.407) 		0.249
(0.565) 		0.175
(0.464) 		0.651
(0.951)
ANKRD40 8 (2%) 359 0.583
(0.893) 		0.155
(0.438) 		0.00319
(0.0493) 		0.0821
(0.311) 		0.434
(0.769) 		0.517
(0.839) 		0.207
(0.507) 		0.00848
(0.0864) 		0.111
(0.365) 		0.729
(1.00) 		0.954
(1.00) 		0.49
(0.815)
ZNF557 9 (2%) 358 0.0183
(0.136) 		0.437
(0.773) 		0.111
(0.365) 		0.122
(0.384) 		0.0995
(0.343) 		0.0757
(0.298) 		0.085
(0.316) 		0.029
(0.179)
PARVB 9 (2%) 358 0.0766
(0.3) 		0.0671
(0.28) 		0.00473
(0.0638) 		0.84
(1.00) 		1
(1.00) 		0.471
(0.8) 		0.272
(0.595) 		0.00203
(0.0381) 		0.377
(0.708) 		0.129
(0.396)
EIF2AK3 11 (3%) 356 0.112
(0.367) 		0.119
(0.381) 		0.087
(0.32) 		0.254
(0.571) 		0.0459
(0.228) 		0.0152
(0.122) 		0.255
(0.572) 		0.565
(0.878) 		0.058
(0.257) 		0.269
(0.59)
TGM1 11 (3%) 356 0.0106
(0.0971) 		0.358
(0.686) 		0.713
(1.00) 		1
(1.00) 		0.164
(0.445) 		0.00257
(0.0431) 		0.0842
(0.315) 		0.0955
(0.336)
SORBS1 10 (3%) 357 0.057
(0.254) 		0.112
(0.367) 		0.0229
(0.156) 		1
(1.00) 		0.537
(0.857) 		0.924
(1.00) 		0.109
(0.362) 		0.0541
(0.248) 		0.215
(0.516) 		0.0477
(0.234)
TOMM70A 10 (3%) 357 0.287
(0.609) 		0.451
(0.786) 		0.0182
(0.135) 		0.0783
(0.303) 		0.291
(0.613) 		0.192
(0.488) 		0.142
(0.417) 		0.0732
(0.293) 		0.464
(0.795) 		0.221
(0.523) 		0.0167
(0.129) 		0.188
(0.484)
BACH2 16 (4%) 351 0.791
(1.00) 		0.516
(0.839) 		0.29
(0.612) 		0.00058
(0.0176) 		0.119
(0.381) 		0.884
(1.00) 		0.012
(0.105) 		0.311
(0.636) 		0.382
(0.714) 		0.0674
(0.28) 		0.476
(0.804) 		0.415
(0.749)
NFS1 5 (1%) 362 0.0323
(0.189) 		0.138
(0.41) 		0.477
(0.805) 		0.479
(0.807) 		0.0021
(0.0388) 		0.494
(0.819) 		0.0663
(0.278)
CLDN17 13 (4%) 354 0.0752
(0.297) 		0.0662
(0.278) 		0.0975
(0.34) 		0.0191
(0.14) 		0.0334
(0.193) 		0.564
(0.878) 		0.287
(0.608) 		0.055
(0.25) 		0.37
(0.699) 		0.742
(1.00) 		0.883
(1.00) 		0.475
(0.803)
VWA3A 11 (3%) 356 0.158
(0.439) 		0.0521
(0.245) 		0.0252
(0.165) 		0.00834
(0.0857) 		0.0753
(0.297) 		0.459
(0.791) 		0.435
(0.77) 		0.0869
(0.32) 		0.553
(0.87) 		0.848
(1.00)
SFRS2IP 26 (7%) 341 0.269
(0.591) 		0.786
(1.00) 		0.00069
(0.0196) 		0.304
(0.627) 		0.679
(0.976) 		0.865
(1.00) 		0.172
(0.459) 		0.105
(0.356) 		0.0481
(0.235) 		0.179
(0.47) 		0.539
(0.858) 		0.523
(0.845)
KCNC4 8 (2%) 359 0.172
(0.459) 		0.0777
(0.302) 		0.148
(0.429) 		0.119
(0.381) 		0.554
(0.871) 		0.00915
(0.0898) 		0.187
(0.483) 		0.0406
(0.211) 		0.218
(0.521) 		0.923
(1.00)
GATAD2A 9 (2%) 358 0.00386
(0.0555) 		0.138
(0.41) 		0.511
(0.836) 		0.574
(0.888) 		0.0503
(0.241) 		0.0159
(0.125) 		0.0847
(0.316) 		0.117
(0.376) 		0.417
(0.751) 		0.966
(1.00)
OR5L2 14 (4%) 353 0.283
(0.608) 		0.297
(0.618) 		0.386
(0.718) 		0.365
(0.694) 		0.0872
(0.32) 		0.043
(0.22) 		0.0876
(0.32) 		0.163
(0.445) 		0.0952
(0.336) 		0.0409
(0.213)
F9 19 (5%) 348 0.0358
(0.201) 		0.109
(0.363) 		0.0248
(0.164) 		0.421
(0.755) 		1
(1.00) 		0.0683
(0.282) 		0.818
(1.00) 		0.313
(0.638) 		0.66
(0.958) 		0.507
(0.833) 		0.341
(0.667) 		0.425
(0.76)
OSBPL5 14 (4%) 353 0.0535
(0.247) 		0.0378
(0.206) 		0.0575
(0.256) 		0.609
(0.917) 		0.056
(0.252) 		0.204
(0.504) 		0.221
(0.523) 		0.0144
(0.117) 		0.825
(1.00) 		0.539
(0.858) 		0.264
(0.584) 		0.473
(0.801)
TTLL5 11 (3%) 356 0.0113
(0.101) 		0.322
(0.646) 		0.339
(0.666) 		0.864
(1.00) 		0.399
(0.73) 		0.0228
(0.156) 		0.469
(0.797) 		0.648
(0.949)
SMPDL3B 9 (2%) 358 1
(1.00) 		0.0202
(0.145) 		0.816
(1.00) 		0.97
(1.00) 		0.387
(0.718) 		0.34
(0.666) 		0.106
(0.358) 		0.433
(0.768) 		0.00978
(0.0931) 		0.991
(1.00)
CCDC112 7 (2%) 360 0.0979
(0.34) 		0.0516
(0.243) 		0.00682
(0.0772) 		0.513
(0.837) 		0.0535
(0.247) 		0.874
(1.00) 		0.262
(0.581) 		0.0496
(0.239) 		0.926
(1.00) 		0.238
(0.549)
SFTPB 9 (2%) 358 0.793
(1.00) 		0.51
(0.836) 		0.0237
(0.159) 		0.613
(0.92) 		0.722
(1.00) 		0.0812
(0.309) 		0.496
(0.821) 		0.437
(0.773) 		0.0163
(0.127) 		0.966
(1.00)
SULF2 22 (6%) 345 0.324
(0.648) 		0.11
(0.364) 		0.068
(0.281) 		0.368
(0.698) 		0.0154
(0.123) 		0.378
(0.709) 		0.117
(0.376) 		0.0445
(0.224) 		0.185
(0.479) 		0.147
(0.428) 		0.298
(0.62) 		0.922
(1.00)
CPB2 9 (2%) 358 0.0438
(0.222) 		0.51
(0.836) 		0.764
(1.00) 		0.419
(0.753) 		0.59
(0.901) 		0.734
(1.00) 		0.907
(1.00) 		0.0623
(0.268) 		0.0258
(0.167) 		0.0619
(0.267)
BCL7A 5 (1%) 362 0.579
(0.891) 		0.45
(0.786) 		0.819
(1.00) 		0.826
(1.00) 		0.933
(1.00) 		0.262
(0.581) 		0.0139
(0.115) 		0.0711
(0.288) 		0.0378
(0.206)
MAPK6 18 (5%) 349 0.422
(0.756) 		0.121
(0.383) 		0.0636
(0.271) 		0.636
(0.939) 		0.257
(0.575) 		0.0921
(0.331) 		0.0636
(0.271) 		0.0426
(0.219) 		0.624
(0.93) 		0.75
(1.00)
P2RY13 15 (4%) 352 0.0055
(0.0702) 		0.131
(0.4) 		0.513
(0.837) 		0.856
(1.00) 		0.167
(0.451) 		0.0669
(0.279) 		0.0956
(0.336) 		0.0711
(0.288) 		0.714
(1.00) 		1
(1.00)
ATXN3L 17 (5%) 350 0.189
(0.485) 		0.449
(0.785) 		0.776
(1.00) 		0.888
(1.00) 		0.242
(0.555) 		0.329
(0.654) 		0.611
(0.919) 		0.0989
(0.342) 		0.00485
(0.0648) 		0.124
(0.387) 		0.568
(0.883) 		0.977
(1.00)
SLC26A8 16 (4%) 351 0.253
(0.569) 		0.812
(1.00) 		0.0006
(0.0181) 		0.662
(0.96) 		0.522
(0.844) 		0.694
(0.986) 		0.404
(0.736) 		0.316
(0.642) 		0.25
(0.565) 		0.323
(0.646) 		0.839
(1.00) 		0.906
(1.00)
PLEKHF2 10 (3%) 357 0.136
(0.408) 		0.836
(1.00) 		0.598
(0.908) 		0.4
(0.732) 		0.251
(0.566) 		0.0408
(0.212) 		0.104
(0.353) 		0.6
(0.909) 		0.529
(0.851) 		0.614
(0.92)
CYLD 22 (6%) 345 0.254
(0.569) 		0.576
(0.89) 		0.29
(0.612) 		0.861
(1.00) 		0.0227
(0.156) 		0.623
(0.93) 		0.115
(0.374) 		0.275
(0.599) 		0.368
(0.697) 		0.0692
(0.283) 		1
(1.00) 		0.52
(0.841)
PRPS1 8 (2%) 359 0.0722
(0.29) 		0.322
(0.646) 		0.155
(0.438) 		0.43
(0.765) 		0.136
(0.409) 		0.0886
(0.322) 		0.0126
(0.108) 		0.131
(0.4)
TMEM126A 7 (2%) 360 1
(1.00) 		0.122
(0.384) 		0.086
(0.318) 		0.125
(0.39) 		0.0439
(0.222) 		0.0897
(0.325) 		0.0946
(0.335) 		0.652
(0.951)
GRB2 9 (2%) 358 0.636
(0.938) 		0.398
(0.73) 		0.795
(1.00) 		0.222
(0.525) 		0.72
(1.00) 		0.0465
(0.23) 		0.503
(0.828) 		0.134
(0.405) 		0.313
(0.638) 		0.145
(0.424)
PCBP1 10 (3%) 357 0.313
(0.638) 		0.37
(0.699) 		0.428
(0.763) 		0.117
(0.377) 		0.444
(0.781) 		0.463
(0.793) 		0.366
(0.696) 		0.368
(0.698) 		0.00265
(0.044) 		0.249
(0.565)
KCNK1 10 (3%) 357 0.596
(0.907) 		1
(1.00) 		0.91
(1.00) 		0.688
(0.98) 		0.292
(0.614) 		0.039
(0.207) 		0.0691
(0.283) 		0.443
(0.78)
FYN 15 (4%) 352 0.156
(0.439) 		0.811
(1.00) 		0.00878
(0.088) 		1
(1.00) 		0.173
(0.46) 		0.262
(0.581) 		0.0981
(0.341) 		0.185
(0.48) 		0.909
(1.00) 		0.214
(0.515)
GPR174 8 (2%) 359 0.592
(0.904) 		0.516
(0.839) 		0.00595
(0.0728) 		0.957
(1.00) 		0.219
(0.521) 		0.361
(0.69) 		0.802
(1.00) 		0.954
(1.00) 		0.461
(0.792) 		0.966
(1.00)
ZNF583 15 (4%) 352 1
(1.00) 		0.691
(0.983) 		0.028
(0.175) 		0.37
(0.699) 		0.342
(0.668) 		0.304
(0.626) 		0.368
(0.698) 		0.172
(0.459) 		0.171
(0.457) 		0.101
(0.345) 		0.483
(0.811) 		0.184
(0.478)
FNDC7 9 (2%) 358 0.0869
(0.32) 		0.435
(0.77) 		0.108
(0.362) 		0.405
(0.737) 		0.229
(0.535) 		0.0317
(0.187) 		0.288
(0.61) 		0.926
(1.00)
WEE1 12 (3%) 355 0.00045
(0.0149) 		0.213
(0.514) 		0.356
(0.685) 		0.128
(0.394) 		0.0765
(0.3) 		0.125
(0.39) 		0.864
(1.00) 		0.858
(1.00)
KLC4 16 (4%) 351 0.405
(0.737) 		0.0233
(0.158) 		0.103
(0.35) 		0.563
(0.877) 		0.931
(1.00) 		0.603
(0.912) 		0.615
(0.921) 		0.0857
(0.317) 		0.984
(1.00) 		0.282
(0.608) 		0.66
(0.958) 		0.641
(0.943)
CRY1 13 (4%) 354 0.0958
(0.337) 		0.573
(0.887) 		0.0368
(0.204) 		0.446
(0.782) 		0.12
(0.382) 		0.0575
(0.256) 		0.686
(0.979) 		0.0985
(0.341) 		0.798
(1.00) 		0.32
(0.646)
PDGFRA 49 (13%) 318 0.256
(0.574) 		0.458
(0.791) 		0.143
(0.419) 		0.619
(0.925) 		0.299
(0.621) 		0.274
(0.597) 		0.182
(0.475) 		0.00669
(0.0765) 		0.185
(0.48) 		0.253
(0.568) 		0.506
(0.832) 		0.288
(0.609)
SCAI 14 (4%) 353 0.0183
(0.136) 		0.162
(0.444) 		0.0541
(0.248) 		0.715
(1.00) 		0.753
(1.00) 		0.147
(0.427) 		0.118
(0.379) 		0.137
(0.409)
RAF1 13 (4%) 354 0.489
(0.815) 		0.156
(0.439) 		0.00744
(0.0808) 		0.177
(0.467) 		0.329
(0.654) 		0.213
(0.514) 		0.601
(0.91) 		0.905
(1.00) 		0.487
(0.814) 		0.872
(1.00)
MMP8 12 (3%) 355 0.0642
(0.273) 		0.16
(0.441) 		0.267
(0.588) 		0.0849
(0.316) 		0.211
(0.512) 		0.564
(0.878) 		0.0395
(0.208) 		0.151
(0.434) 		0.22
(0.523) 		0.884
(1.00)
SCD5 7 (2%) 360 0.0132
(0.111) 		0.861
(1.00) 		0.138
(0.41) 		0.603
(0.912) 		0.714
(1.00) 		0.149
(0.43) 		0.734
(1.00) 		0.794
(1.00)
TAF7L 11 (3%) 356 0.516
(0.838) 		0.76
(1.00) 		0.731
(1.00) 		0.735
(1.00) 		0.478
(0.806) 		0.254
(0.57) 		0.201
(0.5) 		0.0126
(0.108) 		0.244
(0.559) 		0.238
(0.549)
ERBB4 51 (14%) 316 0.0732
(0.293) 		0.11
(0.364) 		0.141
(0.415) 		0.397
(0.729) 		0.357
(0.685) 		0.967
(1.00) 		0.473
(0.801) 		0.258
(0.576) 		0.0949
(0.336) 		0.0197
(0.142) 		0.927
(1.00) 		0.726
(1.00)
CLEC4F 19 (5%) 348 0.379
(0.71) 		0.452
(0.786) 		0.00035
(0.0128) 		0.164
(0.446) 		0.334
(0.659) 		0.789
(1.00) 		0.157
(0.439) 		0.119
(0.38) 		0.153
(0.436) 		0.453
(0.786) 		0.474
(0.802) 		0.611
(0.919)
PRKCH 13 (4%) 354 0.0971
(0.339) 		0.398
(0.73) 		0.871
(1.00) 		0.73
(1.00) 		0.339
(0.665) 		0.0448
(0.225) 		0.44
(0.776) 		0.221
(0.524) 		0.328
(0.652) 		0.543
(0.859)
PPP1R12B 12 (3%) 355 0.0264
(0.17) 		0.156
(0.439) 		1
(1.00) 		0.0725
(0.291) 		0.248
(0.563) 		0.629
(0.933) 		0.468
(0.796) 		0.45
(0.786) 		0.176
(0.466) 		0.385
(0.717)
LHCGR 24 (7%) 343 0.858
(1.00) 		1
(1.00) 		0.373
(0.703) 		0.357
(0.685) 		0.918
(1.00) 		0.883
(1.00) 		0.0503
(0.241) 		0.173
(0.461) 		0.02
(0.144) 		0.621
(0.928) 		0.341
(0.667) 		0.954
(1.00)
CNIH4 6 (2%) 361 0.853
(1.00) 		0.515
(0.838) 		0.138
(0.41) 		0.849
(1.00) 		0.0102
(0.0949) 		0.0673
(0.28) 		0.407
(0.739) 		0.114
(0.37) 		1
(1.00) 		0.213
(0.514)
MYL1 8 (2%) 359 0.2
(0.498) 		0.158
(0.439) 		0.445
(0.782) 		0.074
(0.295) 		0.224
(0.527) 		0.137
(0.409) 		0.0275
(0.173) 		0.785
(1.00)
C12ORF5 6 (2%) 361 0.855
(1.00) 		1
(1.00) 		0.287
(0.608) 		0.199
(0.496) 		0.16
(0.441) 		0.0044
(0.0605) 		0.203
(0.502) 		0.754
(1.00)
ZNF280B 12 (3%) 355 0.0987
(0.341) 		0.81
(1.00) 		0.00838
(0.0859) 		0.435
(0.77) 		0.188
(0.483) 		0.52
(0.842) 		0.625
(0.931) 		0.679
(0.976) 		0.587
(0.898) 		0.112
(0.367)
ERBB2 27 (7%) 340 0.512
(0.837) 		0.0676
(0.28) 		0.922
(1.00) 		0.96
(1.00) 		0.0685
(0.282) 		0.498
(0.823) 		0.16
(0.441) 		0.00309
(0.0483) 		0.0846
(0.316) 		0.151
(0.434) 		0.617
(0.923) 		0.923
(1.00)
ZNF789 7 (2%) 360 0.126
(0.39) 		0.446
(0.782) 		0.00152
(0.0323) 		0.535
(0.856) 		0.769
(1.00) 		0.0785
(0.304) 		0.928
(1.00) 		0.56
(0.875)
C2ORF77 8 (2%) 359 0.344
(0.671) 		1
(1.00) 		0.0389
(0.207) 		0.272
(0.594) 		0.154
(0.437) 		0.81
(1.00) 		0.206
(0.507) 		0.199
(0.497) 		0.201
(0.5) 		0.263
(0.583)
TWISTNB 8 (2%) 359 0.884
(1.00) 		0.262
(0.581) 		1
(1.00) 		0.656
(0.954) 		0.638
(0.941) 		0.0297
(0.182) 		0.302
(0.625) 		0.111
(0.366) 		0.776
(1.00) 		0.535
(0.856)
ETAA1 16 (4%) 351 0.253
(0.569) 		0.813
(1.00) 		0.0678
(0.28) 		0.423
(0.758) 		0.782
(1.00) 		0.836
(1.00) 		0.0673
(0.28) 		0.026
(0.168) 		0.205
(0.505) 		0.118
(0.378) 		0.714
(1.00) 		0.837
(1.00)
PCSK1 16 (4%) 351 0.284
(0.608) 		0.452
(0.786) 		0.114
(0.371) 		0.00617
(0.0738) 		0.141
(0.415) 		0.682
(0.977) 		0.0944
(0.335) 		0.154
(0.437) 		0.0647
(0.274) 		0.236
(0.546) 		0.465
(0.795) 		0.627
(0.932)
F2RL1 7 (2%) 360 0.0651
(0.275) 		1
(1.00) 		0.00176
(0.0348) 		0.363
(0.693) 		0.0944
(0.335) 		0.107
(0.36) 		0.616
(0.922) 		0.925
(1.00)
ALG2 8 (2%) 359 0.186
(0.481) 		0.452
(0.786) 		0.171
(0.457) 		0.86
(1.00) 		0.443
(0.78) 		0.347
(0.674) 		1
(1.00) 		0.345
(0.671) 		0.567
(0.88) 		0.00601
(0.0732)
FAM133B 5 (1%) 362 0.0314
(0.187) 		0.197
(0.495) 		1
(1.00) 		0.793
(1.00) 		0.123
(0.385) 		0.0581
(0.257) 		0.312
(0.638) 		0.339
(0.666) 		0.475
(0.804) 		0.54
(0.858)
CARD11 41 (11%) 326 0.281
(0.606) 		0.361
(0.689) 		0.552
(0.869) 		0.668
(0.965) 		0.404
(0.736) 		0.872
(1.00) 		0.0554
(0.25) 		0.00415
(0.0581) 		0.119
(0.38) 		0.783
(1.00) 		0.922
(1.00) 		0.96
(1.00)
SOX7 11 (3%) 356 0.0991
(0.342) 		0.199
(0.497) 		0.023
(0.157) 		0.396
(0.728) 		0.055
(0.25) 		0.717
(1.00) 		0.143
(0.42) 		0.61
(0.918) 		0.308
(0.632) 		0.311
(0.636)
TRIP11 19 (5%) 348 0.074
(0.295) 		0.321
(0.646) 		0.00028
(0.0112) 		0.478
(0.805) 		0.285
(0.608) 		0.226
(0.531) 		0.14
(0.414) 		0.122
(0.384) 		0.0573
(0.255) 		0.146
(0.425)
ABCC4 20 (5%) 347 0.701
(0.992) 		0.764
(1.00) 		0.0261
(0.169) 		0.239
(0.55) 		0.311
(0.636) 		0.729
(1.00) 		0.896
(1.00) 		0.404
(0.736) 		0.989
(1.00) 		0.591
(0.902) 		0.799
(1.00) 		0.26
(0.578)
RNF182 13 (4%) 354 0.314
(0.639) 		0.702
(0.992) 		0.648
(0.949) 		0.347
(0.674) 		0.00214
(0.039) 		0.0897
(0.325) 		0.54
(0.858) 		0.514
(0.837)
RBBP7 15 (4%) 352 0.00949
(0.0916) 		0.211
(0.512) 		0.0924
(0.332) 		0.16
(0.441) 		0.592
(0.904) 		0.912
(1.00) 		0.628
(0.933) 		0.579
(0.891) 		0.397
(0.729) 		0.0989
(0.342)
MAGEA1 13 (4%) 354 0.847
(1.00) 		0.11
(0.364) 		0.329
(0.654) 		0.802
(1.00) 		0.0772
(0.301) 		0.059
(0.259) 		0.0148
(0.119) 		0.626
(0.932) 		0.384
(0.716) 		0.583
(0.894)
DHX35 11 (3%) 356 0.287
(0.609) 		1
(1.00) 		0.137
(0.409) 		0.4
(0.731) 		0.467
(0.796) 		0.42
(0.754) 		0.259
(0.578) 		0.575
(0.889) 		0.204
(0.504) 		0.0265
(0.17) 		0.579
(0.891) 		0.488
(0.814)
MST4 7 (2%) 360 0.651
(0.951) 		0.875
(1.00) 		0.371
(0.7) 		0.27
(0.592) 		0.714
(1.00) 		0.157
(0.439) 		0.0419
(0.216) 		0.329
(0.654)
ACP6 6 (2%) 361 1
(1.00) 		0.515
(0.838) 		0.827
(1.00) 		0.582
(0.892) 		0.162
(0.443) 		0.123
(0.385) 		0.0165
(0.128) 		0.487
(0.814)
GPNMB 13 (4%) 354 0.229
(0.535) 		0.74
(1.00) 		0.0905
(0.327) 		0.569
(0.883) 		0.399
(0.731) 		0.184
(0.479) 		0.293
(0.615) 		0.0467
(0.231)
OR51E1 13 (4%) 354 0.615
(0.921) 		0.501
(0.826) 		0.601
(0.91) 		0.645
(0.947) 		0.302
(0.625) 		0.0812
(0.309) 		0.612
(0.919) 		0.0115
(0.102) 		0.604
(0.913) 		0.705
(0.995)
AGFG1 15 (4%) 352 0.407
(0.739) 		0.466
(0.796) 		0.177
(0.467) 		0.539
(0.858) 		0.474
(0.803) 		0.174
(0.463) 		0.534
(0.855) 		0.465
(0.795) 		0.215
(0.516) 		0.00968
(0.0927) 		0.219
(0.522) 		1
(1.00)
OR1I1 10 (3%) 357 0.223
(0.525) 		0.18
(0.472) 		0.909
(1.00) 		0.801
(1.00) 		0.0923
(0.332) 		0.0561
(0.252) 		0.34
(0.667) 		0.015
(0.121) 		0.955
(1.00) 		0.966
(1.00)
NEXN 17 (5%) 350 0.107
(0.36) 		0.692
(0.985) 		0.379
(0.71) 		0.678
(0.975) 		0.252
(0.568) 		0.0803
(0.308) 		0.324
(0.647) 		0.376
(0.706) 		0.127
(0.393) 		0.104
(0.352) 		0.404
(0.736) 		0.0413
(0.214)
C5ORF22 11 (3%) 356 0.302
(0.625) 		0.835
(1.00) 		0.466
(0.796) 		0.374
(0.703) 		0.385
(0.716) 		0.263
(0.583) 		0.411
(0.744) 		0.0413
(0.214)
MOBKL2B 7 (2%) 360 1
(1.00) 		0.679
(0.976) 		0.662
(0.96) 		0.163
(0.445) 		0.103
(0.351) 		0.01
(0.0943) 		0.0623
(0.268) 		0.434
(0.769) 		0.152
(0.434) 		0.538
(0.857)
GPR87 10 (3%) 357 0.211
(0.511) 		0.0378
(0.206) 		0.0554
(0.25) 		0.515
(0.838) 		0.109
(0.362) 		0.646
(0.947) 		0.508
(0.834) 		0.178
(0.468) 		0.978
(1.00) 		0.381
(0.712)
DDX23 18 (5%) 349 0.405
(0.736) 		0.321
(0.646) 		0.238
(0.55) 		0.674
(0.972) 		0.12
(0.381) 		0.303
(0.626) 		0.773
(1.00) 		0.23
(0.536) 		0.0956
(0.336) 		0.722
(1.00) 		0.00616
(0.0738) 		0.429
(0.764)
TMEM92 3 (1%) 364 0.159
(0.44) 		0.258
(0.576) 		0.0716
(0.289) 		0.468
(0.796) 		0.00375
(0.0546)
TRMT5 6 (2%) 361 0.106
(0.357) 		0.743
(1.00) 		0.446
(0.782) 		0.862
(1.00) 		0.806
(1.00) 		0.073
(0.293) 		0.015
(0.121) 		0.684
(0.978)
AURKA 7 (2%) 360 0.229
(0.535) 		0.741
(1.00) 		0.552
(0.869) 		0.963
(1.00) 		0.367
(0.697) 		0.0696
(0.285) 		0.667
(0.965) 		0.278
(0.602) 		0.0171
(0.13) 		0.309
(0.633)
KRT14 8 (2%) 359 0.514
(0.837) 		0.744
(1.00) 		1
(1.00) 		0.386
(0.717) 		0.0968
(0.339) 		0.00668
(0.0765) 		0.253
(0.569) 		0.647
(0.949)
ANKHD1 29 (8%) 338 0.39
(0.72) 		0.784
(1.00) 		0.0126
(0.108) 		0.102
(0.347) 		0.358
(0.686) 		0.257
(0.575) 		0.13
(0.397) 		0.0578
(0.256) 		0.143
(0.42) 		0.165
(0.448) 		0.583
(0.893) 		0.879
(1.00)
ADAM18 18 (5%) 349 0.117
(0.378) 		0.321
(0.646) 		0.13
(0.398) 		0.877
(1.00) 		0.386
(0.717) 		0.651
(0.951) 		0.246
(0.561) 		0.227
(0.532) 		0.322
(0.646) 		0.0012
(0.028)
PPP1R3A 32 (9%) 335 0.0968
(0.339) 		0.16
(0.441) 		0.00734
(0.0804) 		0.858
(1.00) 		0.668
(0.965) 		0.251
(0.566) 		0.525
(0.847) 		0.0668
(0.279) 		0.257
(0.575) 		0.639
(0.941) 		0.0897
(0.325) 		0.404
(0.736)
ATG2B 15 (4%) 352 0.104
(0.353) 		0.762
(1.00) 		0.0286
(0.178) 		0.296
(0.617) 		0.42
(0.754) 		0.635
(0.938) 		0.208
(0.509) 		0.187
(0.483) 		0.164
(0.446) 		0.367
(0.697)
KIAA1804 16 (4%) 351 0.162
(0.443) 		0.111
(0.366) 		0.0335
(0.193) 		0.214
(0.516) 		0.0551
(0.25) 		0.68
(0.977) 		0.845
(1.00) 		0.257
(0.575) 		0.477
(0.805) 		0.982
(1.00) 		0.249
(0.565) 		0.884
(1.00)
C10ORF79 27 (7%) 340 0.0752
(0.297) 		0.0862
(0.318) 		0.0175
(0.132) 		0.18
(0.473) 		0.623
(0.929) 		0.784
(1.00) 		0.869
(1.00) 		0.206
(0.507) 		0.542
(0.859) 		0.397
(0.729) 		0.502
(0.827) 		0.45
(0.786)
RPA3 4 (1%) 363 0.772
(1.00) 		0.157
(0.439) 		0.0865
(0.319) 		0.028
(0.175) 		0.424
(0.758) 		0.233
(0.541) 		0.322
(0.646) 		0.42
(0.754) 		0.28
(0.605) 		0.224
(0.527)
LRRC39 8 (2%) 359 0.0863
(0.319) 		0.217
(0.519) 		0.109
(0.363) 		0.62
(0.927) 		0.553
(0.871) 		0.00896
(0.0889) 		0.303
(0.626) 		0.111
(0.365)
NOX5 5 (1%) 362 0.0318
(0.187) 		0.106
(0.356) 		0.127
(0.392) 		1
(1.00) 		0.123
(0.385) 		0.0566
(0.253) 		0.397
(0.729) 		0.663
(0.961)
WWTR1 6 (2%) 361 0.488
(0.814) 		0.0369
(0.204) 		0.539
(0.858) 		0.697
(0.989) 		0.53
(0.851) 		0.78
(1.00) 		0.414
(0.748) 		0.655
(0.953)
WDR66 19 (5%) 348 0.176
(0.466) 		0.611
(0.919) 		0.00083
(0.0221) 		0.116
(0.375) 		0.206
(0.506) 		0.552
(0.869) 		0.448
(0.785) 		0.323
(0.646) 		0.802
(1.00) 		0.341
(0.667) 		0.932
(1.00) 		0.924
(1.00)
ATAD2B 15 (4%) 352 0.252
(0.568) 		0.577
(0.891) 		0.206
(0.507) 		0.087
(0.32) 		0.78
(1.00) 		0.859
(1.00) 		0.0144
(0.117) 		0.0792
(0.305) 		0.065
(0.275) 		0.136
(0.407) 		0.956
(1.00) 		0.725
(1.00)
SLC33A1 9 (2%) 358 0.633
(0.936) 		0.905
(1.00) 		0.264
(0.584) 		0.29
(0.612) 		0.0482
(0.235) 		0.249
(0.565) 		0.246
(0.561) 		0.895
(1.00) 		0.458
(0.791) 		0.641
(0.943)
PNP 4 (1%) 363 0.0184
(0.137) 		0.774
(1.00) 		1
(1.00) 		0.253
(0.569) 		0.548
(0.865) 		0.169
(0.454) 		0.686
(0.979) 		0.254
(0.571)
ACTL8 9 (2%) 358 0.142
(0.417) 		0.156
(0.439) 		0.636
(0.939) 		0.681
(0.977) 		0.851
(1.00) 		0.0292
(0.18) 		0.407
(0.739) 		0.508
(0.834) 		0.118
(0.379) 		0.284
(0.608) 		0.955
(1.00) 		0.885
(1.00)
CDK14 15 (4%) 352 1
(1.00) 		0.765
(1.00) 		0.645
(0.946) 		0.76
(1.00) 		0.0517
(0.244) 		0.129
(0.396) 		0.259
(0.577) 		0.12
(0.382) 		0.451
(0.786) 		0.0392
(0.207)
SPCS2 5 (1%) 362 1
(1.00) 		0.107
(0.359) 		0.301
(0.624) 		0.786
(1.00) 		0.245
(0.559) 		0.15
(0.433) 		0.275
(0.598) 		0.0494
(0.238)
SULT6B1 9 (2%) 358 0.214
(0.515) 		0.025
(0.165) 		1
(1.00) 		0.786
(1.00) 		0.8
(1.00) 		0.865
(1.00) 		0.906
(1.00) 		0.367
(0.697)
IRAK3 8 (2%) 359 0.0873
(0.32) 		0.509
(0.835) 		0.557
(0.872) 		0.865
(1.00) 		0.0453
(0.226) 		0.127
(0.393) 		0.57
(0.885) 		0.282
(0.608)
AGBL2 14 (4%) 353 0.0521
(0.245) 		1
(1.00) 		0.0574
(0.255) 		0.0733
(0.293) 		0.763
(1.00) 		0.15
(0.432) 		0.393
(0.723) 		0.152
(0.435) 		0.00826
(0.0852) 		0.481
(0.808)
MTDH 12 (3%) 355 1
(1.00) 		0.796
(1.00) 		0.165
(0.448) 		0.527
(0.849) 		0.571
(0.885) 		0.828
(1.00) 		0.553
(0.871) 		0.0346
(0.196) 		0.539
(0.858) 		0.0926
(0.332) 		0.0502
(0.241) 		0.953
(1.00)
CCDC160 10 (3%) 357 0.784
(1.00) 		0.47
(0.798) 		0.00824
(0.0851) 		0.0802
(0.308) 		0.172
(0.459) 		0.218
(0.52) 		0.304
(0.628) 		0.0688
(0.282) 		0.146
(0.426) 		0.224
(0.528)
RPGRIP1L 17 (5%) 350 0.0162
(0.127) 		0.362
(0.691) 		0.131
(0.4) 		0.781
(1.00) 		0.123
(0.386) 		0.117
(0.376) 		0.563
(0.877) 		0.31
(0.634) 		0.848
(1.00) 		0.0711
(0.288) 		0.626
(0.932) 		0.593
(0.905)
ICOSLG 4 (1%) 363 0.063
(0.27) 		0.461
(0.792) 		0.294
(0.616) 		0.61
(0.918) 		0.0446
(0.225) 		0.0855
(0.317) 		0.157
(0.439) 		0.165
(0.448) 		0.151
(0.434) 		0.835
(1.00)
DUSP1 6 (2%) 361 0.135
(0.407) 		0.745
(1.00) 		0.0448
(0.225) 		0.988
(1.00) 		0.531
(0.852) 		0.746
(1.00) 		0.0985
(0.341) 		0.267
(0.588)
ZNF280C 9 (2%) 358 0.288
(0.609) 		0.263
(0.583) 		0.135
(0.406) 		0.368
(0.697) 		0.854
(1.00) 		0.44
(0.777) 		0.8
(1.00) 		0.895
(1.00) 		0.152
(0.435) 		0.0415
(0.215)
PLEK 12 (3%) 355 0.0752
(0.297) 		0.0673
(0.28) 		0.0257
(0.167) 		0.401
(0.733) 		0.51
(0.836) 		0.794
(1.00) 		0.861
(1.00) 		0.0543
(0.249) 		0.222
(0.525) 		0.259
(0.578)
HNRNPH3 4 (1%) 363 0.335
(0.661) 		0.108
(0.362) 		0.789
(1.00) 		0.373
(0.702) 		0.0661
(0.278) 		0.179
(0.469) 		0.0944
(0.335) 		0.00416
(0.0582)
LIG1 16 (4%) 351 0.0016
(0.0332) 		0.58
(0.891) 		0.207
(0.508) 		0.404
(0.735) 		0.174
(0.461) 		0.612
(0.919) 		0.362
(0.691) 		0.0747
(0.296) 		0.312
(0.637) 		0.186
(0.481) 		0.732
(1.00) 		0.923
(1.00)
RFXAP 6 (2%) 361 0.595
(0.906) 		0.0244
(0.162) 		0.289
(0.61) 		0.498
(0.823) 		0.386
(0.717) 		0.588
(0.899) 		0.573
(0.887) 		0.582
(0.893)
RBAK 17 (5%) 350 0.492
(0.817) 		0.797
(1.00) 		0.131
(0.399) 		0.209
(0.51) 		0.131
(0.4) 		0.172
(0.459) 		0.0247
(0.163) 		0.374
(0.704) 		0.302
(0.625) 		0.0742
(0.295) 		0.326
(0.65) 		0.906
(1.00)
ZNF14 13 (4%) 354 0.187
(0.482) 		1
(1.00) 		0.164
(0.446) 		0.632
(0.936) 		0.331
(0.656) 		0.35
(0.677) 		0.122
(0.384) 		0.021
(0.148) 		0.207
(0.508) 		0.208
(0.509) 		0.242
(0.555) 		0.886
(1.00)
CD244 7 (2%) 360 0.0108
(0.0979) 		0.452
(0.786) 		0.384
(0.716) 		0.0701
(0.286) 		0.341
(0.667) 		0.684
(0.978) 		0.519
(0.84) 		0.258
(0.577) 		0.383
(0.715) 		0.847
(1.00) 		0.881
(1.00) 		0.837
(1.00)
GNA11 7 (2%) 360 0.383
(0.715) 		0.0802
(0.308) 		0.287
(0.608) 		0.126
(0.39) 		0.0347
(0.197) 		0.105
(0.355) 		0.105
(0.355) 		0.365
(0.695) 		0.955
(1.00) 		0.699
(0.99)
RHPN2 15 (4%) 352 0.16
(0.441) 		0.58
(0.891) 		0.241
(0.553) 		0.74
(1.00) 		0.724
(1.00) 		0.599
(0.909) 		0.805
(1.00) 		0.0986
(0.341) 		0.0422
(0.217) 		0.0695
(0.284)
LAS1L 9 (2%) 358 0.0875
(0.32) 		0.51
(0.836) 		0.538
(0.857) 		0.449
(0.786) 		0.268
(0.589) 		0.0131
(0.111) 		0.323
(0.646) 		0.171
(0.457) 		0.25
(0.566) 		0.884
(1.00)
CATSPER4 11 (3%) 356 0.579
(0.891) 		0.451
(0.786) 		0.114
(0.37) 		0.436
(0.771) 		0.281
(0.606) 		0.651
(0.951) 		0.0118
(0.104) 		0.0953
(0.336) 		0.308
(0.632) 		0.148
(0.428) 		0.579
(0.891) 		0.926
(1.00)
LAMC1 21 (6%) 346 0.172
(0.459) 		0.221
(0.523) 		0.32
(0.646) 		0.269
(0.59) 		0.138
(0.411) 		0.0401
(0.21) 		0.94
(1.00) 		0.471
(0.799) 		0.478
(0.805) 		0.821
(1.00) 		0.375
(0.705) 		0.535
(0.856)
SLC25A13 14 (4%) 353 0.442
(0.779) 		0.717
(1.00) 		0.544
(0.86) 		0.306
(0.63) 		0.821
(1.00) 		0.904
(1.00) 		0.058
(0.257) 		0.486
(0.814) 		0.21
(0.51) 		0.0319
(0.188)
ATP8B2 17 (5%) 350 0.0971
(0.339) 		0.196
(0.495) 		0.00036
(0.013) 		0.449
(0.786) 		0.252
(0.568) 		0.258
(0.576) 		0.599
(0.909) 		0.13
(0.398) 		0.389
(0.72) 		0.282
(0.607) 		0.0672
(0.28) 		0.938
(1.00)
TMEM131 21 (6%) 346 0.0996
(0.343) 		0.812
(1.00) 		0.0813
(0.31) 		0.859
(1.00) 		1
(1.00) 		0.605
(0.913) 		0.0728
(0.292) 		0.181
(0.474) 		0.474
(0.802) 		0.00868
(0.0877) 		0.0508
(0.242) 		0.707
(0.997)
FAS 7 (2%) 360 0.08
(0.307) 		0.51
(0.836) 		0.0536
(0.247) 		0.653
(0.952) 		0.0227
(0.155) 		0.107
(0.36) 		0.207
(0.508) 		0.663
(0.96)
TXNDC17 5 (1%) 362 0.82
(1.00) 		0.38
(0.711) 		0.461
(0.792) 		0.277
(0.601) 		0.0768
(0.3) 		0.128
(0.395) 		0.0151
(0.121) 		0.492
(0.816)
ACVR2A 17 (5%) 350 0.407
(0.739) 		0.856
(1.00) 		0.00608
(0.0735) 		0.0943
(0.335) 		0.221
(0.523) 		0.63
(0.934) 		0.102
(0.349) 		0.216
(0.517) 		0.749
(1.00) 		0.417
(0.751) 		0.435
(0.771) 		0.527
(0.849)
WT1 26 (7%) 341 0.0974
(0.34) 		0.196
(0.495) 		0.593
(0.905) 		0.961
(1.00) 		0.0592
(0.26) 		0.305
(0.628) 		0.184
(0.479) 		0.0202
(0.145) 		0.108
(0.362) 		0.1
(0.344) 		0.927
(1.00) 		0.832
(1.00)
MTMR8 11 (3%) 356 0.142
(0.417) 		0.038
(0.206) 		0.517
(0.839) 		0.484
(0.811) 		0.469
(0.798) 		0.745
(1.00) 		0.618
(0.924) 		0.161
(0.442) 		0.308
(0.632) 		0.073
(0.292)
MAPK9 10 (3%) 357 1
(1.00) 		0.61
(0.918) 		0.429
(0.763) 		0.506
(0.832) 		1
(1.00) 		0.346
(0.673) 		0.683
(0.977) 		0.805
(1.00) 		0.485
(0.813) 		0.462
(0.792) 		0.0211
(0.149) 		0.463
(0.793)
KRT19 4 (1%) 363 0.0932
(0.333) 		0.684
(0.978) 		0.809
(1.00) 		0.247
(0.563) 		0.488
(0.814) 		0.493
(0.818) 		0.00068
(0.0195)
LASS3 14 (4%) 353 0.0348
(0.197) 		0.369
(0.698) 		0.282
(0.608) 		0.741
(1.00) 		0.635
(0.938) 		0.439
(0.775) 		0.704
(0.994) 		0.45
(0.786) 		0.196
(0.495) 		0.827
(1.00)
ZNF518B 10 (3%) 357 1
(1.00) 		0.515
(0.838) 		0.11
(0.364) 		0.455
(0.788) 		0.0559
(0.251) 		0.0316
(0.187) 		0.0813
(0.31) 		0.0616
(0.267) 		0.162
(0.444) 		0.403
(0.735)
C14ORF159 9 (2%) 358 1
(1.00) 		0.668
(0.966) 		0.109
(0.363) 		0.188
(0.484) 		0.24
(0.553) 		0.0494
(0.238) 		0.0609
(0.265) 		0.105
(0.355) 		0.19
(0.486) 		0.489
(0.815)
EFEMP1 20 (5%) 347 0.581
(0.891) 		0.452
(0.786) 		0.186
(0.48) 		0.176
(0.465) 		0.0528
(0.246) 		0.0169
(0.13) 		0.0635
(0.271) 		0.284
(0.608) 		0.182
(0.476) 		0.72
(1.00) 		0.229
(0.535) 		0.471
(0.8)
ASPG 7 (2%) 360 0.0812
(0.309) 		0.514
(0.838) 		0.139
(0.411) 		0.541
(0.858) 		0.305
(0.628) 		0.0294
(0.181) 		0.154
(0.438) 		0.192
(0.488)
DNAJC16 9 (2%) 358 1
(1.00) 		1
(1.00) 		0.0364
(0.202) 		0.0826
(0.312) 		0.732
(1.00) 		0.841
(1.00) 		0.114
(0.37) 		0.12
(0.382) 		0.126
(0.391) 		0.282
(0.607) 		0.955
(1.00) 		0.641
(0.943)
EIF2B5 15 (4%) 352 0.406
(0.738) 		0.32
(0.646) 		0.312
(0.638) 		1
(1.00) 		0.688
(0.981) 		0.521
(0.843) 		0.0209
(0.148) 		0.263
(0.583) 		0.0559
(0.251) 		0.424
(0.758) 		0.715
(1.00) 		1
(1.00)
CHRNA3 10 (3%) 357 0.063
(0.27) 		0.634
(0.937) 		0.478
(0.805) 		0.763
(1.00) 		0.178
(0.467) 		0.0364
(0.202) 		0.0639
(0.272) 		0.128
(0.395) 		0.353
(0.682) 		0.61
(0.918)
FLT3 24 (7%) 343 0.159
(0.439) 		0.811
(1.00) 		0.413
(0.746) 		0.264
(0.584) 		0.571
(0.885) 		0.686
(0.979) 		0.26
(0.579) 		0.0181
(0.134) 		0.114
(0.371) 		0.107
(0.359) 		0.123
(0.385) 		0.86
(1.00)
KLRC3 5 (1%) 362 0.0616
(0.267) 		0.463
(0.793) 		0.683
(0.977) 		0.305
(0.629) 		0.122
(0.384) 		0.00688
(0.0775) 		0.309
(0.634) 		0.12
(0.382)
ARMC9 7 (2%) 360 0.0812
(0.309) 		0.627
(0.932) 		0.138
(0.41) 		0.752
(1.00) 		0.166
(0.449) 		0.0116
(0.102) 		0.122
(0.384) 		0.0684
(0.282)
MAGEB2 11 (3%) 356 0.579
(0.891) 		1
(1.00) 		0.91
(1.00) 		0.139
(0.411) 		0.0747
(0.296) 		0.0477
(0.234) 		0.642
(0.944) 		0.708
(0.997) 		0.68
(0.977) 		0.915
(1.00) 		0.578
(0.891) 		0.146
(0.426)
TMEM48 10 (3%) 357 0.0226
(0.155) 		0.321
(0.646) 		0.469
(0.798) 		0.784
(1.00) 		0.121
(0.383) 		0.601
(0.91) 		0.811
(1.00) 		0.334
(0.659)
RIMBP3 6 (2%) 361 0.486
(0.814) 		1
(1.00) 		0.73
(1.00) 		0.588
(0.9) 		0.809
(1.00) 		0.745
(1.00) 		0.351
(0.679) 		0.0374
(0.205)
FER 15 (4%) 352 0.115
(0.372) 		0.518
(0.84) 		0.0931
(0.333) 		0.515
(0.838) 		0.00311
(0.0485) 		0.0506
(0.241) 		0.87
(1.00) 		0.455
(0.788) 		0.757
(1.00) 		0.826
(1.00) 		0.499
(0.824) 		0.542
(0.859)
ELFN2 9 (2%) 358 0.794
(1.00) 		0.6
(0.909) 		0.444
(0.781) 		0.93
(1.00) 		0.475
(0.803) 		0.122
(0.384) 		0.019
(0.139) 		0.525
(0.847)
DCTN5 6 (2%) 361 0.598
(0.909) 		0.38
(0.712) 		1
(1.00) 		0.359
(0.687) 		0.236
(0.546) 		0.147
(0.428) 		0.012
(0.104) 		0.151
(0.433)
PARP1 14 (4%) 353 0.00935
(0.0909) 		0.61
(0.918) 		0.486
(0.814) 		0.263
(0.583) 		0.172
(0.459) 		0.328
(0.652) 		0.251
(0.567) 		0.262
(0.582) 		0.58
(0.891) 		0.837
(1.00)
OAS1 8 (2%) 359 0.0536
(0.247) 		0.157
(0.439) 		0.51
(0.835) 		0.741
(1.00) 		0.00546
(0.0698) 		0.97
(1.00) 		0.927
(1.00) 		0.066
(0.278) 		0.913
(1.00) 		0.216
(0.517)
DNASE1L3 8 (2%) 359 0.509
(0.835) 		0.217
(0.519) 		0.627
(0.932) 		0.569
(0.883) 		1
(1.00) 		0.575
(0.889) 		0.675
(0.973) 		0.0167
(0.129)
RANBP1 6 (2%) 361 0.488
(0.814) 		0.164
(0.446) 		0.203
(0.502) 		0.618
(0.924) 		0.0187
(0.138) 		0.0883
(0.322) 		0.451
(0.786) 		0.399
(0.731)
OR10G4 5 (1%) 362 0.0619
(0.267) 		0.513
(0.837) 		1
(1.00) 		0.6
(0.91) 		0.368
(0.697) 		0.0364
(0.202) 		0.873
(1.00) 		0.14
(0.413)
OSTM1 5 (1%) 362 0.664
(0.962) 		0.38
(0.711) 		0.303
(0.626) 		0.648
(0.949) 		0.0778
(0.302) 		0.129
(0.396) 		0.166
(0.449) 		0.00267
(0.0442) 		0.051
(0.242) 		0.224
(0.528)
MAP7D3 17 (5%) 350 0.286
(0.608) 		1
(1.00) 		0.13
(0.398) 		0.244
(0.557) 		0.418
(0.752) 		0.983
(1.00) 		0.298
(0.62) 		0.4
(0.732) 		0.674
(0.972) 		0.368
(0.698) 		0.247
(0.562) 		0.00267
(0.0442)
SGK3 8 (2%) 359 0.785
(1.00) 		0.486
(0.814) 		0.197
(0.495) 		0.278
(0.602) 		0.215
(0.517) 		0.456
(0.788) 		0.0431
(0.22) 		0.615
(0.921)
DNAJC7 7 (2%) 360 0.00721
(0.0796) 		0.273
(0.596) 		0.445
(0.782) 		0.899
(1.00) 		0.164
(0.446) 		0.102
(0.349) 		0.191
(0.487) 		0.152
(0.434)
PLK2 6 (2%) 361 0.0113
(0.101) 		1
(1.00) 		0.294
(0.616) 		0.651
(0.951) 		0.894
(1.00) 		0.474
(0.803) 		0.346
(0.672) 		0.128
(0.394)
TRIM54 9 (2%) 358 0.327
(0.651) 		1
(1.00) 		0.117
(0.378) 		0.0413
(0.214) 		0.0833
(0.313) 		0.272
(0.594) 		0.245
(0.56) 		0.191
(0.487) 		0.53
(0.852) 		0.95
(1.00)
PREX2 31 (8%) 336 0.098
(0.34) 		0.16
(0.441) 		0.174
(0.461) 		0.309
(0.633) 		0.261
(0.58) 		0.191
(0.488) 		0.898
(1.00) 		0.249
(0.565) 		0.556
(0.871) 		0.447
(0.783) 		0.022
(0.153) 		0.394
(0.725)
AGTR2 15 (4%) 352 0.869
(1.00) 		0.21
(0.511) 		0.286
(0.608) 		0.0945
(0.335) 		0.93
(1.00) 		0.657
(0.956) 		0.535
(0.856) 		0.137
(0.409) 		0.442
(0.779) 		0.137
(0.409) 		0.05
(0.24) 		0.838
(1.00)
HNMT 8 (2%) 359 0.883
(1.00) 		0.165
(0.447) 		0.766
(1.00) 		0.356
(0.684) 		0.552
(0.87) 		0.738
(1.00) 		0.5
(0.825) 		0.0147
(0.119) 		0.657
(0.955) 		0.886
(1.00)
SLC7A6 6 (2%) 361 0.105
(0.355) 		0.875
(1.00) 		1
(1.00) 		0.423
(0.758) 		0.119
(0.381) 		0.0875
(0.32) 		0.0371
(0.205) 		0.0717
(0.289)
RAB42 4 (1%) 363 0.062
(0.268) 		0.293
(0.615) 		0.339
(0.665) 		0.543
(0.859) 		0.392
(0.723) 		0.0262
(0.169) 		0.157
(0.439) 		0.14
(0.415)
SLC24A2 17 (5%) 350 0.404
(0.736) 		0.209
(0.51) 		0.0353
(0.199) 		0.808
(1.00) 		0.326
(0.65) 		0.604
(0.912) 		0.797
(1.00) 		0.529
(0.85) 		0.775
(1.00) 		0.379
(0.71) 		0.225
(0.528) 		0.401
(0.733)
YES1 9 (2%) 358 0.285
(0.608) 		0.324
(0.647) 		0.302
(0.625) 		0.206
(0.507) 		0.105
(0.356) 		0.0315
(0.187) 		0.131
(0.399) 		0.0562
(0.252) 		0.215
(0.517) 		0.313
(0.638)
AP1M1 9 (2%) 358 0.285
(0.608) 		0.394
(0.726) 		0.816
(1.00) 		0.0654
(0.276) 		0.269
(0.591) 		0.122
(0.384) 		0.0342
(0.196) 		0.54
(0.858) 		0.532
(0.853) 		0.494
(0.819)
MOV10 13 (4%) 354 0.145
(0.422) 		0.155
(0.438) 		0.227
(0.532) 		1
(1.00) 		0.922
(1.00) 		0.677
(0.974) 		0.75
(1.00) 		0.176
(0.465) 		0.00812
(0.0845) 		0.663
(0.961)
GRINA 4 (1%) 363 0.0187
(0.138) 		0.841
(1.00) 		1
(1.00) 		0.505
(0.831) 		0.552
(0.869) 		0.74
(1.00) 		0.19
(0.486) 		0.389
(0.72)
CAPRIN1 11 (3%) 356 0.58
(0.891) 		0.456
(0.788) 		0.302
(0.625) 		0.122
(0.384) 		0.426
(0.76) 		0.556
(0.871) 		0.409
(0.742) 		0.368
(0.698) 		0.481
(0.809) 		0.00084
(0.0221)
CTTN 4 (1%) 363 0.0634
(0.271) 		0.459
(0.791) 		0.0193
(0.14) 		0.0848
(0.316) 		0.16
(0.441) 		0.601
(0.91)
PIGC 4 (1%) 363 0.124
(0.389) 		1
(1.00) 		0.46
(0.791) 		0.00916
(0.0899) 		0.195
(0.493) 		0.267
(0.587) 		0.0659
(0.278) 		0.32
(0.646)
NDUFAF1 7 (2%) 360 0.082
(0.311) 		0.628
(0.932) 		0.243
(0.556) 		0.758
(1.00) 		0.0944
(0.335) 		0.0909
(0.328) 		0.00141
(0.0311) 		0.335
(0.661)
UBR2 15 (4%) 352 0.0351
(0.198) 		0.563
(0.877) 		0.487
(0.814) 		0.694
(0.986) 		0.103
(0.35) 		0.4
(0.732) 		1
(1.00) 		0.24
(0.552) 		0.672
(0.969) 		0.332
(0.657) 		0.222
(0.525) 		0.185
(0.479)
DCAF12L2 17 (5%) 350 0.285
(0.608) 		0.451
(0.786) 		0.162
(0.444) 		0.643
(0.944) 		0.68
(0.976) 		0.969
(1.00) 		0.283
(0.608) 		0.016
(0.126) 		0.0638
(0.272) 		0.0602
(0.263) 		0.196
(0.495) 		0.669
(0.966)
DIAPH2 21 (6%) 346 0.0487
(0.237) 		0.125
(0.39) 		0.387
(0.718) 		0.128
(0.395) 		0.818
(1.00) 		0.195
(0.494) 		0.29
(0.612) 		0.0657
(0.277) 		0.832
(1.00) 		0.514
(0.837) 		0.449
(0.786) 		0.461
(0.792)
ZNF334 19 (5%) 348 0.14
(0.413) 		0.359
(0.687) 		0.0683
(0.282) 		0.0275
(0.173) 		0.177
(0.467) 		0.928
(1.00) 		0.215
(0.516) 		0.54
(0.858) 		0.615
(0.922) 		0.337
(0.663) 		0.684
(0.978) 		0.634
(0.937)
KLF5 11 (3%) 356 0.572
(0.886) 		0.923
(1.00) 		0.0556
(0.251) 		0.104
(0.353) 		0.245
(0.559) 		0.0224
(0.155) 		0.12
(0.382) 		0.518
(0.84)
DSC2 14 (4%) 353 0.076
(0.299) 		0.391
(0.721) 		0.064
(0.272) 		0.357
(0.686) 		0.224
(0.528) 		0.149
(0.431) 		0.151
(0.434) 		0.169
(0.454) 		0.0121
(0.105) 		0.546
(0.863)
JMJD6 8 (2%) 359 0.0864
(0.319) 		0.118
(0.379) 		1
(1.00) 		0.836
(1.00) 		0.106
(0.356) 		0.473
(0.801) 		0.516
(0.838) 		0.0148
(0.12)
PER3 17 (5%) 350 0.0744
(0.296) 		0.784
(1.00) 		0.004
(0.0568) 		0.161
(0.443) 		0.542
(0.859) 		0.737
(1.00) 		0.0585
(0.258) 		0.554
(0.871) 		0.501
(0.827) 		0.477
(0.805) 		0.0509
(0.242) 		1
(1.00)
ZNF443 8 (2%) 359 0.253
(0.569) 		0.603
(0.912) 		0.0381
(0.206) 		0.295
(0.616) 		0.266
(0.587) 		0.94
(1.00) 		0.165
(0.447) 		0.385
(0.716) 		0.346
(0.672) 		0.57
(0.884)
DPCR1 12 (3%) 355 0.0706
(0.287) 		0.221
(0.523) 		0.792
(1.00) 		0.899
(1.00) 		0.256
(0.574) 		0.246
(0.561) 		0.069
(0.283) 		0.517
(0.839) 		0.361
(0.69) 		0.0037
(0.0542)
PARG 11 (3%) 356 0.0257
(0.167) 		0.149
(0.431) 		0.247
(0.563) 		0.839
(1.00) 		0.107
(0.36) 		0.0554
(0.25) 		0.142
(0.417) 		0.229
(0.535)
OR4C15 13 (4%) 354 0.0345
(0.196) 		0.0859
(0.318) 		0.822
(1.00) 		0.307
(0.631) 		0.702
(0.993) 		0.104
(0.353) 		0.634
(0.937) 		0.431
(0.766) 		0.778
(1.00) 		1
(1.00)
CYP2C18 5 (1%) 362 1
(1.00) 		0.86
(1.00) 		0.827
(1.00) 		0.638
(0.941) 		0.296
(0.617) 		0.0226
(0.155) 		0.195
(0.494) 		0.297
(0.618) 		0.581
(0.891) 		0.487
(0.814)
ITGA5 16 (4%) 351 0.44
(0.777) 		0.368
(0.697) 		0.0168
(0.129) 		0.608
(0.916) 		0.556
(0.871) 		0.534
(0.855) 		0.364
(0.694) 		0.467
(0.796) 		0.9
(1.00) 		0.784
(1.00)
KRTAP5-3 4 (1%) 363 1
(1.00) 		1
(1.00) 		0.34
(0.666) 		0.0783
(0.303) 		0.55
(0.867) 		0.0106
(0.0971) 		0.292
(0.614) 		0.0936
(0.334)
GABPA 11 (3%) 356 0.157
(0.439) 		0.197
(0.495) 		0.0787
(0.304) 		0.628
(0.932) 		0.0688
(0.282) 		0.143
(0.419) 		0.887
(1.00) 		0.475
(0.804) 		0.912
(1.00) 		0.0257
(0.167) 		0.835
(1.00) 		0.406
(0.739)
E2F5 7 (2%) 360 0.457
(0.789) 		0.0374
(0.205) 		0.0523
(0.245) 		0.71
(0.999) 		0.711
(1.00) 		0.651
(0.951) 		0.676
(0.974) 		0.804
(1.00)
NUFIP1 8 (2%) 359 0.00211
(0.0388) 		0.162
(0.444) 		0.767
(1.00) 		0.719
(1.00) 		0.0814
(0.31) 		0.949
(1.00) 		0.259
(0.578) 		0.109
(0.363)
BAZ2B 15 (4%) 352 0.0982
(0.341) 		0.198
(0.496) 		0.0335
(0.193) 		0.862
(1.00) 		0.0638
(0.272) 		0.994
(1.00) 		0.534
(0.855) 		0.263
(0.583) 		0.196
(0.495) 		0.0585
(0.258)
UGT1A1 11 (3%) 356 0.578
(0.891) 		0.454
(0.786) 		0.0884
(0.322) 		1
(1.00) 		0.814
(1.00) 		0.63
(0.934) 		0.95
(1.00) 		0.0451
(0.226) 		0.0657
(0.277) 		0.349
(0.676) 		0.353
(0.681) 		0.309
(0.633)
MFSD9 12 (3%) 355 0.286
(0.608) 		1
(1.00) 		0.00212
(0.0388) 		0.293
(0.615) 		0.465
(0.795) 		0.393
(0.724) 		0.211
(0.512) 		0.0761
(0.299) 		0.295
(0.617) 		0.305
(0.628) 		0.778
(1.00) 		0.534
(0.855)
STK35 6 (2%) 361 0.0111
(0.0997) 		0.273
(0.595) 		0.0854
(0.317) 		0.494
(0.819) 		0.0928
(0.333) 		0.149
(0.43) 		0.123
(0.385) 		0.134
(0.405)
RC3H2 9 (2%) 358 0.288
(0.609) 		0.323
(0.647) 		0.467
(0.796) 		0.718
(1.00) 		0.104
(0.353) 		0.0378
(0.206) 		0.42
(0.754) 		0.362
(0.691) 		0.152
(0.434) 		0.587
(0.898)
FBXL19 7 (2%) 360 0.651
(0.951) 		1
(1.00) 		0.0969
(0.339) 		0.0307
(0.185) 		0.441
(0.778) 		0.598
(0.908) 		0.599
(0.909) 		0.0644
(0.273)
BFSP1 8 (2%) 359 0.448
(0.784) 		0.137
(0.409) 		0.337
(0.663) 		0.465
(0.795) 		0.452
(0.786) 		0.197
(0.495) 		0.161
(0.442) 		0.469
(0.797) 		0.682
(0.977) 		0.0213
(0.15)
TRIM24 17 (5%) 350 0.407
(0.739) 		0.319
(0.646) 		0.141
(0.415) 		0.418
(0.752) 		0.944
(1.00) 		0.53
(0.852) 		0.608
(0.917) 		0.182
(0.475) 		0.0398
(0.209) 		0.16
(0.441) 		0.604
(0.913) 		0.523
(0.845)
PAK7 20 (5%) 347 0.01
(0.0943) 		0.599
(0.909) 		0.093
(0.333) 		0.465
(0.795) 		0.129
(0.397) 		0.491
(0.816) 		0.478
(0.805) 		0.201
(0.499) 		0.0986
(0.341) 		0.134
(0.405) 		0.818
(1.00) 		0.12
(0.381)
AFF1 12 (3%) 355 1
(1.00) 		0.454
(0.786) 		0.495
(0.821) 		0.523
(0.845) 		0.0386
(0.206) 		0.232
(0.539) 		0.7
(0.99) 		0.266
(0.587) 		0.682
(0.977) 		0.643
(0.945) 		0.353
(0.682) 		0.416
(0.75)
STYK1 7 (2%) 360 0.649
(0.95) 		0.776
(1.00) 		0.385
(0.717) 		0.501
(0.827) 		0.413
(0.746) 		0.0318
(0.187) 		0.779
(1.00) 		0.62
(0.927)
BCAP29 7 (2%) 360 0.0814
(0.31) 		0.116
(0.375) 		0.561
(0.875) 		0.447
(0.783) 		0.308
(0.633) 		0.0578
(0.256) 		0.0375
(0.205) 		0.751
(1.00)
CSNK2A2 7 (2%) 360 0.649
(0.95) 		0.38
(0.711) 		0.769
(1.00) 		0.428
(0.763) 		0.121
(0.383) 		0.231
(0.538) 		0.0327
(0.191) 		0.0906
(0.327)
ACTN1 9 (2%) 358 0.0876
(0.32) 		0.00826
(0.0852) 		0.814
(1.00) 		0.923
(1.00) 		0.362
(0.691) 		0.701
(0.992) 		0.439
(0.775) 		0.457
(0.789) 		0.88
(1.00) 		0.311
(0.636)
DHX32 10 (3%) 357 0.898
(1.00) 		0.743
(1.00) 		0.909
(1.00) 		0.473
(0.801) 		0.0264
(0.17) 		0.0753
(0.298) 		0.987
(1.00) 		0.739
(1.00) 		0.63
(0.934) 		0.925
(1.00)
NKTR 13 (4%) 354 0.784
(1.00) 		0.195
(0.493) 		0.044
(0.223) 		0.915
(1.00) 		0.559
(0.874) 		0.354
(0.682) 		0.639
(0.941) 		0.0899
(0.325) 		0.548
(0.865) 		0.273
(0.595) 		0.0675
(0.28) 		0.575
(0.889)
ICA1 6 (2%) 361 0.488
(0.814) 		1
(1.00) 		0.293
(0.615) 		0.575
(0.889) 		0.278
(0.602) 		0.00872
(0.0877) 		0.194
(0.492) 		0.568
(0.882)
NEK1 12 (3%) 355 0.0964
(0.338) 		0.811
(1.00) 		0.0061
(0.0736) 		0.433
(0.769) 		0.51
(0.836) 		0.536
(0.856) 		0.353
(0.681) 		0.0922
(0.331) 		0.189
(0.485) 		0.395
(0.726) 		0.878
(1.00) 		0.354
(0.682)
RNASEL 12 (3%) 355 1
(1.00) 		0.156
(0.439) 		0.165
(0.447) 		0.613
(0.92) 		0.0329
(0.191) 		0.296
(0.617) 		0.0932
(0.333) 		0.154
(0.438) 		0.307
(0.63) 		0.0745
(0.296) 		0.594
(0.905) 		0.244
(0.559)
ALCAM 11 (3%) 356 1
(1.00) 		0.913
(1.00) 		0.109
(0.363) 		0.708
(0.998) 		0.229
(0.535) 		0.0991
(0.342) 		0.207
(0.507) 		0.346
(0.672) 		0.0125
(0.108) 		0.403
(0.735)
SLC30A8 14 (4%) 353 0.0652
(0.276) 		0.0687
(0.282) 		0.117
(0.378) 		0.905
(1.00) 		0.632
(0.935) 		0.953
(1.00) 		0.511
(0.836) 		0.0162
(0.127) 		0.0542
(0.248) 		0.831
(1.00)
UCHL5 4 (1%) 363 1
(1.00) 		1
(1.00) 		0.185
(0.48) 		0.0603
(0.263) 		0.554
(0.871) 		1
(1.00) 		0.128
(0.394) 		0.0337
(0.194)
PROM1 12 (3%) 355 0.2
(0.498) 		1
(1.00) 		0.156
(0.439) 		0.416
(0.75) 		0.469
(0.798) 		0.121
(0.383) 		0.609
(0.918) 		0.0326
(0.19)
LRMP 5 (1%) 362 0.821
(1.00) 		0.2
(0.499) 		0.295
(0.617) 		0.754
(1.00) 		0.87
(1.00) 		0.0395
(0.208) 		0.584
(0.894) 		0.621
(0.928)
SNX2 11 (3%) 356 1
(1.00) 		1
(1.00) 		0.0781
(0.303) 		0.0309
(0.185) 		0.12
(0.382) 		0.928
(1.00) 		0.411
(0.744) 		0.165
(0.446) 		0.359
(0.687) 		0.17
(0.456)
CEACAM6 4 (1%) 363 0.0957
(0.337) 		0.21
(0.51) 		1
(1.00) 		0.0361
(0.201) 		0.195
(0.493) 		0.156
(0.439) 		0.0608
(0.264) 		0.231
(0.537)
AKAP11 22 (6%) 345 0.00879
(0.088) 		0.357
(0.686) 		0.0562
(0.252) 		0.12
(0.382) 		0.208
(0.509) 		0.852
(1.00) 		0.43
(0.765) 		0.108
(0.361) 		0.221
(0.523) 		0.0774
(0.301) 		0.162
(0.444) 		0.801
(1.00)
HDAC5 11 (3%) 356 0.304
(0.627) 		0.176
(0.466) 		0.292
(0.614) 		0.778
(1.00) 		0.0766
(0.3) 		0.00336
(0.0512) 		0.142
(0.417) 		0.0786
(0.304) 		0.0555
(0.25) 		0.638
(0.94)
OR51T1 11 (3%) 356 0.137
(0.409) 		1
(1.00) 		0.289
(0.611) 		0.63
(0.934) 		0.644
(0.946) 		0.0463
(0.229) 		0.76
(1.00) 		0.47
(0.798) 		0.956
(1.00) 		0.836
(1.00)
ABHD2 10 (3%) 357 0.285
(0.608) 		0.0399
(0.209) 		0.118
(0.38) 		0.795
(1.00) 		0.796
(1.00) 		0.866
(1.00) 		1
(1.00) 		0.154
(0.438) 		0.471
(0.799) 		0.221
(0.524) 		0.246
(0.562) 		0.887
(1.00)
HECTD2 10 (3%) 357 0.0761
(0.299) 		0.319
(0.646) 		0.0083
(0.0855) 		0.196
(0.495) 		0.465
(0.795) 		0.771
(1.00) 		0.147
(0.427) 		0.0577
(0.256) 		0.899
(1.00) 		0.184
(0.478)
ARHGAP11A 14 (4%) 353 0.102
(0.348) 		0.221
(0.523) 		0.514
(0.837) 		0.96
(1.00) 		0.0512
(0.243) 		0.119
(0.38) 		0.126
(0.391) 		0.0996
(0.343) 		0.0263
(0.169) 		0.86
(1.00)
TUBB4 5 (1%) 362 0.0315
(0.187) 		0.513
(0.837) 		0.462
(0.792) 		0.505
(0.831) 		0.368
(0.697) 		0.146
(0.426) 		0.69
(0.982) 		0.295
(0.617)
USF1 5 (1%) 362 0.0624
(0.269) 		0.11
(0.364) 		0.85
(1.00) 		0.364
(0.693) 		0.369
(0.698) 		0.142
(0.417) 		0.578
(0.891) 		0.0135
(0.113)
APOBEC4 7 (2%) 360 0.287
(0.608) 		0.451
(0.786) 		0.0111
(0.0999) 		0.108
(0.361) 		0.342
(0.668) 		0.516
(0.838) 		0.32
(0.646) 		0.117
(0.376) 		0.359
(0.687) 		0.168
(0.452)
TMEM41B 4 (1%) 363 0.465
(0.795) 		0.296
(0.618) 		0.613
(0.92) 		0.0104
(0.0956) 		1
(1.00) 		0.12
(0.382) 		0.156
(0.439) 		0.542
(0.859)
FAM119A 5 (1%) 362 0.249
(0.565) 		0.777
(1.00) 		1
(1.00) 		0.0477
(0.234) 		0.213
(0.514) 		0.954
(1.00)
MAGEA4 6 (2%) 361 0.263
(0.583) 		1
(1.00) 		0.876
(1.00) 		0.976
(1.00) 		0.158
(0.439) 		0.128
(0.395) 		0.309
(0.633) 		0.0488
(0.237) 		0.0958
(0.337) 		0.834
(1.00)
MANF 4 (1%) 363 0.0625
(0.269) 		0.461
(0.792) 		0.789
(1.00) 		0.686
(0.979) 		0.391
(0.721) 		0.0267
(0.171) 		0.633
(0.936) 		0.54
(0.858)
METTL5 5 (1%) 362 0.818
(1.00) 		0.332
(0.657) 		0.375
(0.704) 		0.617
(0.923) 		0.771
(1.00) 		0.226
(0.53) 		0.236
(0.547) 		0.0189
(0.139)
NTRK2 23 (6%) 344 0.0662
(0.278) 		0.796
(1.00) 		0.469
(0.797) 		0.441
(0.778) 		0.781
(1.00) 		0.62
(0.926) 		0.0525
(0.245) 		0.0765
(0.3) 		0.0428
(0.22) 		0.183
(0.476)
DNAJC11 9 (2%) 358 0.0546
(0.249) 		0.158
(0.439) 		0.212
(0.513) 		1
(1.00) 		1
(1.00) 		0.15
(0.432) 		0.826
(1.00) 		0.0701
(0.286) 		0.535
(0.856) 		0.0369
(0.204)
CLDN10 11 (3%) 356 0.0875
(0.32) 		0.175
(0.464) 		0.425
(0.76) 		0.282
(0.607) 		0.398
(0.73) 		0.167
(0.451) 		0.223
(0.525) 		0.323
(0.647) 		0.00635
(0.0746) 		0.536
(0.856)
PCSK5 14 (4%) 353 0.173
(0.46) 		0.321
(0.646) 		0.149
(0.43) 		0.821
(1.00) 		0.0139
(0.115) 		0.599
(0.909) 		0.817
(1.00) 		0.641
(0.943) 		0.605
(0.914) 		0.0645
(0.273) 		0.529
(0.85) 		0.612
(0.919)
RARRES3 5 (1%) 362 0.021
(0.148) 		0.107
(0.359) 		0.453
(0.786) 		0.993
(1.00) 		0.772
(1.00) 		0.0667
(0.279) 		0.705
(0.995) 		0.69
(0.982)
TRAF3IP1 6 (2%) 361 0.135
(0.406) 		0.0378
(0.206) 		0.137
(0.409) 		0.897
(1.00) 		0.0935
(0.334) 		0.0853
(0.317) 		0.177
(0.466) 		0.636
(0.939)
C14ORF50 6 (2%) 361 0.189
(0.485) 		0.451
(0.786) 		0.0108
(0.0981) 		0.109
(0.363) 		0.829
(1.00) 		0.641
(0.943) 		0.418
(0.752) 		0.0586
(0.258) 		0.526
(0.848) 		0.137
(0.409)
FAM151A 6 (2%) 361 0.0313
(0.187) 		0.196
(0.495) 		0.0534
(0.247) 		0.822
(1.00) 		0.0949
(0.336) 		0.147
(0.427) 		0.077
(0.3) 		0.415
(0.749)
ADH7 7 (2%) 360 0.185
(0.48) 		0.794
(1.00) 		0.0161
(0.126) 		1
(1.00) 		0.064
(0.272) 		0.0872
(0.32) 		0.372
(0.701) 		0.6
(0.909) 		0.452
(0.786) 		0.114
(0.371)
SLC38A5 6 (2%) 361 0.489
(0.815) 		0.0812
(0.309) 		1
(1.00) 		0.4
(0.731) 		0.0291
(0.179) 		0.0858
(0.318) 		0.123
(0.385) 		0.17
(0.455)
HIST1H1A 9 (2%) 358 0.0372
(0.205) 		1
(1.00) 		0.833
(1.00) 		0.53
(0.851) 		0.0979
(0.34) 		0.366
(0.696) 		0.359
(0.687) 		0.156
(0.439)
OSR1 4 (1%) 363 0.0942
(0.335) 		1
(1.00) 		1
(1.00) 		0.403
(0.735) 		0.0373
(0.205) 		0.156
(0.439) 		0.368
(0.697) 		0.198
(0.495)
TCF7L2 23 (6%) 344 0.329
(0.654) 		1
(1.00) 		0.0013
(0.0296) 		0.634
(0.937) 		0.331
(0.656) 		0.942
(1.00) 		0.342
(0.668) 		0.745
(1.00) 		0.0601
(0.263) 		0.56
(0.874) 		0.243
(0.557) 		0.771
(1.00)
RSPO2 17 (5%) 350 0.33
(0.655) 		0.47
(0.798) 		0.164
(0.446) 		0.0103
(0.095) 		0.814
(1.00) 		0.555
(0.871) 		0.474
(0.802) 		0.357
(0.685) 		0.333
(0.658) 		0.726
(1.00) 		0.384
(0.715) 		0.434
(0.769)
FAM175A 8 (2%) 359 0.188
(0.484) 		0.452
(0.786) 		0.0388
(0.207) 		0.86
(1.00) 		0.247
(0.563) 		0.543
(0.86) 		0.621
(0.927) 		0.295
(0.617) 		0.971
(1.00) 		0.38
(0.711)
SLC8A3 12 (3%) 355 0.516
(0.838) 		0.32
(0.646) 		0.0406
(0.211) 		0.792
(1.00) 		1
(1.00) 		0.439
(0.775) 		0.361
(0.69) 		0.242
(0.555) 		0.43
(0.765) 		0.359
(0.687)
PTPRB 17 (5%) 350 0.0965
(0.338) 		0.0507
(0.242) 		0.0009
(0.0232) 		0.12
(0.382) 		0.167
(0.451) 		0.67
(0.968) 		0.599
(0.909) 		0.0978
(0.34) 		0.445
(0.782) 		0.441
(0.778) 		0.879
(1.00) 		0.487
(0.814)
PCDH20 21 (6%) 346 0.591
(0.902) 		0.319
(0.646) 		0.00188
(0.0364) 		0.492
(0.816) 		0.64
(0.942) 		0.538
(0.857) 		0.447
(0.783) 		0.125
(0.39) 		0.484
(0.811) 		0.203
(0.503) 		0.375
(0.704) 		0.478
(0.805)
ADH1B 7 (2%) 360 0.387
(0.718) 		0.135
(0.406) 		1
(1.00) 		0.626
(0.932) 		0.443
(0.78) 		0.426
(0.761) 		0.65
(0.95) 		0.00341
(0.0517)
POPDC3 6 (2%) 361 0.285
(0.608) 		1
(1.00) 		0.134
(0.405) 		1
(1.00) 		0.363
(0.692) 		0.048
(0.235) 		0.506
(0.832) 		0.781
(1.00) 		0.555
(0.871) 		0.162
(0.443)
SNRNP200 20 (5%) 347 0.281
(0.607) 		0.126
(0.39) 		0.386
(0.717) 		0.424
(0.759) 		0.116
(0.375) 		0.17
(0.456) 		0.501
(0.827) 		0.122
(0.383) 		0.03
(0.183) 		0.624
(0.93) 		1
(1.00) 		0.774
(1.00)
ADAMTS16 30 (8%) 337 0.17
(0.456) 		0.537
(0.857) 		0.00135
(0.0304) 		0.641
(0.943) 		0.258
(0.576) 		0.88
(1.00) 		0.381
(0.712) 		0.384
(0.715) 		0.228
(0.533) 		0.0952
(0.336) 		0.86
(1.00) 		0.264
(0.584)
EPSTI1 7 (2%) 360 0.125
(0.39) 		0.681
(0.977) 		0.445
(0.782) 		0.992
(1.00) 		0.558
(0.873) 		0.401
(0.733) 		0.452
(0.786) 		0.048
(0.235)
DBF4 7 (2%) 360 0.0543
(0.249) 		0.153
(0.437) 		0.00704
(0.0785) 		0.271
(0.593) 		0.827
(1.00) 		0.874
(1.00) 		0.217
(0.519) 		0.118
(0.38) 		0.732
(1.00) 		0.0894
(0.324)
IRGQ 3 (1%) 364 0.16
(0.441) 		0.0545
(0.249) 		0.662
(0.96) 		0.258
(0.576) 		0.442
(0.779) 		0.466
(0.796) 		0.00103
(0.0254)
IL6R 7 (2%) 360 0.00726
(0.08) 		0.86
(1.00) 		0.387
(0.718) 		0.443
(0.781) 		0.836
(1.00) 		0.163
(0.444) 		0.743
(1.00) 		0.238
(0.548)
C20ORF151 9 (2%) 358 0.216
(0.518) 		0.795
(1.00) 		0.389
(0.72) 		0.534
(0.855) 		0.228
(0.534) 		0.0442
(0.223) 		0.346
(0.673) 		0.38
(0.712) 		0.944
(1.00) 		0.906
(1.00)
SLC16A1 7 (2%) 360 0.00736
(0.0804) 		0.0798
(0.307) 		0.539
(0.858) 		0.892
(1.00) 		0.167
(0.452) 		0.0632
(0.27) 		0.568
(0.882) 		0.167
(0.45)
DUSP9 9 (2%) 358 0.286
(0.608) 		0.396
(0.728) 		0.155
(0.438) 		0.604
(0.913) 		0.106
(0.357) 		0.0839
(0.315) 		0.00923
(0.0904) 		0.0701
(0.286) 		0.578
(0.891) 		0.586
(0.896)
LGALS9C 5 (1%) 362 0.822
(1.00) 		0.862
(1.00) 		0.374
(0.703) 		0.433
(0.769) 		0.295
(0.616) 		0.0348
(0.197) 		0.167
(0.45) 		0.855
(1.00)
ZNF630 7 (2%) 360 0.651
(0.951) 		0.741
(1.00) 		0.374
(0.704) 		0.043
(0.22) 		0.689
(0.981) 		0.845
(1.00) 		0.766
(1.00) 		0.379
(0.71)
KLF11 7 (2%) 360 0.65
(0.951) 		0.119
(0.38) 		0.681
(0.977) 		0.526
(0.848) 		0.444
(0.781) 		0.114
(0.37) 		0.303
(0.625) 		0.0214
(0.15)
MCM9 7 (2%) 360 0.382
(0.714) 		0.0379
(0.206) 		0.54
(0.858) 		0.975
(1.00) 		0.69
(0.982) 		0.508
(0.835) 		0.581
(0.891) 		0.882
(1.00)
PAK1 10 (3%) 357 0.284
(0.608) 		1
(1.00) 		0.00121
(0.0282) 		0.0791
(0.305) 		0.0769
(0.3) 		0.785
(1.00) 		0.601
(0.91) 		0.625
(0.931) 		0.407
(0.739) 		0.784
(1.00)
OR4N4 12 (3%) 355 0.189
(0.485) 		0.452
(0.786) 		0.336
(0.662) 		0.694
(0.987) 		0.313
(0.638) 		0.186
(0.481) 		0.913
(1.00) 		0.298
(0.62) 		0.826
(1.00) 		0.21
(0.511) 		0.0346
(0.197) 		0.627
(0.932)
ABCG2 12 (3%) 355 0.403
(0.735) 		0.211
(0.511) 		0.336
(0.662) 		0.896
(1.00) 		0.0191
(0.14) 		0.154
(0.438) 		0.784
(1.00) 		1
(1.00) 		1
(1.00) 		0.724
(1.00) 		0.449
(0.786) 		0.544
(0.86)
EPC1 13 (4%) 354 0.612
(0.919) 		0.543
(0.859) 		0.309
(0.634) 		0.195
(0.494) 		0.0952
(0.336) 		0.0771
(0.301) 		0.391
(0.721) 		0.125
(0.389) 		0.0295
(0.181) 		0.96
(1.00)
PTPN3 15 (4%) 352 0.515
(0.838) 		0.519
(0.84) 		0.489
(0.815) 		0.848
(1.00) 		0.872
(1.00) 		0.264
(0.585) 		0.893
(1.00) 		0.115
(0.372) 		0.0192
(0.14) 		0.322
(0.646)
LEMD1 3 (1%) 364 0.161
(0.442) 		0.109
(0.363) 		0.0809
(0.309) 		0.0318
(0.188) 		0.25
(0.566) 		0.387
(0.718)
ZNF564 10 (3%) 357 0.0524
(0.245) 		0.813
(1.00) 		0.0239
(0.16) 		1
(1.00) 		0.341
(0.667) 		0.991
(1.00) 		0.602
(0.911) 		0.363
(0.693) 		0.937
(1.00) 		0.178
(0.468)
CCDC111 7 (2%) 360 0.383
(0.715) 		0.681
(0.977) 		0.543
(0.859) 		0.423
(0.758) 		0.307
(0.631) 		0.63
(0.934) 		0.893
(1.00) 		0.00343
(0.0518)
PAK2 10 (3%) 357 0.221
(0.523) 		0.295
(0.616) 		0.466
(0.796) 		0.613
(0.92) 		0.469
(0.797) 		0.174
(0.463) 		0.0275
(0.173) 		0.205
(0.505)
ATF2 6 (2%) 361 0.427
(0.762) 		1
(1.00) 		1
(1.00) 		0.114
(0.371) 		0.16
(0.441) 		0.0285
(0.177) 		0.35
(0.678) 		0.305
(0.628)
LRRC6 3 (1%) 364 0.241
(0.553) 		0.2
(0.498) 		0.616
(0.922) 		0.973
(1.00) 		0.147
(0.426) 		0.481
(0.808) 		0.0618
(0.267) 		0.359
(0.688) 		0.878
(1.00) 		0.0173
(0.131)
MRPS22 10 (3%) 357 0.222
(0.525) 		1
(1.00) 		0.191
(0.487) 		0.0708
(0.287) 		0.451
(0.786) 		0.308
(0.632) 		0.423
(0.757) 		0.0454
(0.227)
PALLD 9 (2%) 358 0.211
(0.512) 		1
(1.00) 		0.0219
(0.153) 		0.202
(0.501) 		0.475
(0.803) 		0.34
(0.666) 		0.165
(0.446) 		0.193
(0.491)
ZFP91 7 (2%) 360 0.65
(0.95) 		1
(1.00) 		0.767
(1.00) 		0.0456
(0.227) 		0.955
(1.00) 		0.919
(1.00) 		0.923
(1.00) 		0.247
(0.563)
C1ORF85 7 (2%) 360 0.0804
(0.308) 		0.509
(0.835) 		0.146
(0.424) 		0.499
(0.824) 		0.0222
(0.154) 		0.103
(0.35) 		0.78
(1.00) 		0.65
(0.95) 		0.921
(1.00) 		0.8
(1.00)
FSHR 15 (4%) 352 0.141
(0.415) 		0.32
(0.646) 		0.0929
(0.333) 		0.269
(0.591) 		0.247
(0.562) 		0.892
(1.00) 		0.909
(1.00) 		0.426
(0.761) 		0.661
(0.959) 		0.0447
(0.225) 		0.955
(1.00) 		0.313
(0.638)
CLVS1 10 (3%) 357 0.898
(1.00) 		0.454
(0.787) 		0.117
(0.376) 		0.533
(0.855) 		0.849
(1.00) 		0.0452
(0.226) 		0.426
(0.761) 		0.793
(1.00)
FOXA2 6 (2%) 361 1
(1.00) 		0.38
(0.711) 		0.46
(0.791) 		0.35
(0.678) 		0.236
(0.546) 		0.303
(0.626) 		0.972
(1.00) 		0.036
(0.201)
MAOB 6 (2%) 361 0.0306
(0.184) 		0.626
(0.932) 		0.204
(0.504) 		0.781
(1.00) 		0.385
(0.716) 		0.148
(0.428) 		0.344
(0.67) 		0.744
(1.00)
KCNN4 7 (2%) 360 1
(1.00) 		0.508
(0.834) 		0.376
(0.705) 		0.555
(0.871) 		0.307
(0.631) 		0.0842
(0.315) 		0.0269
(0.171) 		0.244
(0.558)
FSCB 20 (5%) 347 0.325
(0.648) 		0.112
(0.367) 		0.0767
(0.3) 		0.888
(1.00) 		0.053
(0.246) 		0.947
(1.00) 		0.489
(0.815) 		0.142
(0.418) 		0.676
(0.974) 		0.125
(0.39) 		0.0595
(0.261) 		0.0225
(0.155)
PPYR1 5 (1%) 362 0.0628
(0.27) 		0.686
(0.979) 		0.0171
(0.13) 		0.403
(0.735) 		0.771
(1.00) 		0.35
(0.677) 		0.0849
(0.316) 		0.819
(1.00)
CASP10 7 (2%) 360 0.383
(0.715) 		0.86
(1.00) 		0.196
(0.495) 		0.96
(1.00) 		0.713
(1.00) 		0.834
(1.00) 		0.674
(0.972) 		0.00389
(0.0557)
STAU1 7 (2%) 360 1
(1.00) 		1
(1.00) 		0.493
(0.818) 		0.455
(0.788) 		0.123
(0.385) 		0.107
(0.36) 		0.0142
(0.116) 		0.407
(0.739) 		0.532
(0.854) 		0.313
(0.638)
ZP2 12 (3%) 355 0.0757
(0.298) 		0.0675
(0.28) 		0.164
(0.446) 		0.821
(1.00) 		0.712
(1.00) 		0.808
(1.00) 		0.815
(1.00) 		0.0373
(0.205) 		0.741
(1.00) 		0.218
(0.52) 		0.879
(1.00) 		0.146
(0.426)
ZNF512 3 (1%) 364 0.24
(0.552) 		0.2
(0.499) 		0.346
(0.672) 		0.272
(0.594) 		0.024
(0.16) 		0.658
(0.956)
SLC22A10 15 (4%) 352 0.253
(0.568) 		0.811
(1.00) 		9e-05
(0.00567) 		0.401
(0.733) 		0.277
(0.601) 		0.916
(1.00) 		0.0845
(0.315) 		0.0591
(0.26) 		0.375
(0.704) 		0.323
(0.646) 		0.22
(0.522) 		0.355
(0.683)
GLT8D1 8 (2%) 359 0.00229
(0.0405) 		0.119
(0.38) 		0.454
(0.787) 		0.898
(1.00) 		0.106
(0.357) 		0.25
(0.565) 		0.698
(0.989) 		0.151
(0.433)
UBC 4 (1%) 363 0.773
(1.00) 		0.396
(0.728) 		0.68
(0.977) 		0.0207
(0.147) 		0.145
(0.423) 		0.3
(0.622) 		0.0721
(0.29) 		0.679
(0.976)
BTF3L4 5 (1%) 362 0.324
(0.648) 		0.445
(0.782) 		0.294
(0.616) 		0.69
(0.982) 		0.158
(0.439) 		0.0205
(0.146) 		0.214
(0.516) 		0.624
(0.93)
ZCWPW2 11 (3%) 356 1
(1.00) 		0.796
(1.00) 		0.0254
(0.166) 		1
(1.00) 		0.847
(1.00) 		0.424
(0.758) 		0.0536
(0.247) 		0.569
(0.883) 		0.201
(0.499) 		0.207
(0.507) 		0.095
(0.336) 		0.833
(1.00)
FAM120C 8 (2%) 359 0.236
(0.546) 		0.681
(0.977) 		0.141
(0.415) 		0.0222
(0.154) 		0.294
(0.616) 		0.652
(0.951) 		0.649
(0.95) 		0.295
(0.616)
FMO5 10 (3%) 357 0.899
(1.00) 		0.579
(0.891) 		0.464
(0.795) 		0.609
(0.918) 		0.0891
(0.324) 		0.0672
(0.28) 		0.0676
(0.28) 		0.017
(0.13) 		0.181
(0.474) 		0.259
(0.577)
CHRM3 13 (4%) 354 0.232
(0.54) 		0.924
(1.00) 		0.488
(0.814) 		0.426
(0.761) 		0.0718
(0.289) 		0.00321
(0.0496) 		0.611
(0.918) 		0.391
(0.721) 		0.114
(0.37) 		0.924
(1.00)
SYT2 8 (2%) 359 0.781
(1.00) 		0.378
(0.709) 		0.341
(0.667) 		0.488
(0.814) 		0.0794
(0.306) 		0.259
(0.577) 		0.0557
(0.251) 		0.00029
(0.0114)
NLRP13 27 (7%) 340 0.226
(0.531) 		0.61
(0.918) 		0.0469
(0.232) 		0.0713
(0.288) 		0.21
(0.511) 		0.66
(0.958) 		0.79
(1.00) 		0.528
(0.85) 		0.642
(0.944) 		0.449
(0.785) 		0.734
(1.00) 		0.469
(0.797)
G2E3 12 (3%) 355 0.0155
(0.123) 		0.334
(0.659) 		0.0554
(0.25) 		0.647
(0.948) 		0.341
(0.667) 		0.0755
(0.298) 		0.717
(1.00) 		0.267
(0.588)
CALB2 4 (1%) 363 0.465
(0.795) 		0.514
(0.838) 		1
(1.00) 		0.905
(1.00) 		0.39
(0.721) 		0.0269
(0.171) 		0.539
(0.858) 		0.551
(0.868)
FAM199X 10 (3%) 357 1
(1.00) 		0.743
(1.00) 		0.344
(0.67) 		0.266
(0.586) 		0.681
(0.977) 		0.354
(0.682) 		0.097
(0.339) 		0.00959
(0.0921) 		0.376
(0.707) 		0.427
(0.762)
TAPBP 3 (1%) 364 0.723
(1.00) 		0.341
(0.667) 		0.973
(1.00) 		0.784
(1.00) 		0.0101
(0.0947) 		0.58
(0.891) 		0.274
(0.597)
HIST1H4L 6 (2%) 361 1
(1.00) 		1
(1.00) 		0.201
(0.5) 		0.907
(1.00) 		0.534
(0.855) 		0.0421
(0.217) 		0.971
(1.00) 		0.859
(1.00)
NT5C3L 5 (1%) 362 0.249
(0.565) 		0.613
(0.919) 		0.925
(1.00) 		0.479
(0.807) 		0.00578
(0.0718) 		0.445
(0.782) 		0.25
(0.565)
KIAA1919 9 (2%) 358 0.00095
(0.024) 		0.0831
(0.313) 		0.466
(0.796) 		0.879
(1.00) 		0.05
(0.24) 		0.343
(0.669) 		0.344
(0.67) 		0.0972
(0.339)
SRL 12 (3%) 355 0.0692
(0.283) 		0.371
(0.699) 		0.101
(0.346) 		0.172
(0.459) 		0.0927
(0.333) 		0.159
(0.44) 		0.115
(0.373) 		0.0199
(0.144) 		0.955
(1.00) 		0.214
(0.515)
SKIV2L2 11 (3%) 356 0.335
(0.66) 		0.914
(1.00) 		0.773
(1.00) 		0.53
(0.852) 		0.48
(0.807) 		0.0124
(0.107) 		0.893
(1.00) 		0.197
(0.495) 		0.525
(0.847) 		0.48
(0.808)
C7ORF60 6 (2%) 361 0.104
(0.353) 		0.445
(0.782) 		0.769
(1.00) 		0.0155
(0.123) 		0.191
(0.487) 		0.137
(0.409) 		0.475
(0.804) 		0.616
(0.922) 		1
(1.00) 		0.54
(0.858)
IDE 10 (3%) 357 1
(1.00) 		0.273
(0.596) 		0.735
(1.00) 		0.189
(0.485) 		0.177
(0.467) 		0.038
(0.206) 		0.97
(1.00) 		0.887
(1.00) 		0.82
(1.00) 		0.942
(1.00)
BEX5 7 (2%) 360 0.385
(0.716) 		0.444
(0.781) 		0.456
(0.788) 		0.258
(0.577) 		0.0328
(0.191) 		0.0796
(0.306) 		0.678
(0.975) 		0.518
(0.84)
PLCB2 9 (2%) 358 0.054
(0.248) 		0.0383
(0.206) 		0.794
(1.00) 		0.098
(0.34) 		0.341
(0.667) 		0.88
(1.00) 		0.968
(1.00) 		0.177
(0.467) 		0.653
(0.952) 		0.516
(0.838)
DNAJB11 9 (2%) 358 0.709
(0.999) 		0.567
(0.881) 		0.593
(0.905) 		0.528
(0.85) 		0.852
(1.00) 		0.0398
(0.209) 		0.316
(0.642) 		0.0807
(0.309) 		0.878
(1.00) 		0.354
(0.682)
C9ORF102 8 (2%) 359 0.25
(0.566) 		0.812
(1.00) 		0.0069
(0.0777) 		0.209
(0.51) 		0.212
(0.513) 		0.41
(0.742) 		0.0801
(0.308) 		0.67
(0.967) 		0.585
(0.896) 		0.15
(0.432)
MTIF2 9 (2%) 358 0.0873
(0.32) 		0.163
(0.444) 		0.815
(1.00) 		0.736
(1.00) 		0.027
(0.171) 		0.272
(0.594) 		0.473
(0.802) 		0.183
(0.477)
KLC3 6 (2%) 361 0.486
(0.814) 		0.216
(0.518) 		0.00168
(0.0342) 		0.363
(0.693) 		0.386
(0.718) 		0.5
(0.825) 		0.0693
(0.283) 		0.131
(0.4)
KIAA0528 15 (4%) 352 0.332
(0.657) 		0.811
(1.00) 		0.00904
(0.0893) 		0.395
(0.727) 		0.712
(1.00) 		0.87
(1.00) 		0.533
(0.855) 		0.323
(0.647) 		0.428
(0.763) 		0.197
(0.495)
ZNF546 15 (4%) 352 0.0755
(0.298) 		0.321
(0.646) 		0.00191
(0.0367) 		0.802
(1.00) 		0.877
(1.00) 		0.935
(1.00) 		0.785
(1.00) 		0.606
(0.915) 		0.788
(1.00) 		0.708
(0.997)
SRGAP3 17 (5%) 350 0.405
(0.737) 		0.209
(0.51) 		0.212
(0.513) 		0.0916
(0.33) 		0.417
(0.75) 		0.826
(1.00) 		0.463
(0.794) 		0.0984
(0.341) 		0.062
(0.267) 		0.00089
(0.0231) 		0.875
(1.00) 		0.259
(0.578)
ZMIZ1 9 (2%) 358 0.0869
(0.32) 		0.628
(0.933) 		0.147
(0.427) 		0.175
(0.464) 		0.403
(0.735) 		0.0144
(0.118) 		0.163
(0.445) 		0.152
(0.435)
TRHDE 27 (7%) 340 0.282
(0.607) 		0.159
(0.44) 		0.00254
(0.0429) 		0.0517
(0.244) 		0.0902
(0.326) 		0.482
(0.81) 		0.0998
(0.343) 		0.078
(0.303) 		0.106
(0.357) 		0.354
(0.682) 		0.304
(0.627) 		0.109
(0.362)
STK3 9 (2%) 358 0.0358
(0.2) 		0.681
(0.977) 		0.155
(0.438) 		0.788
(1.00) 		0.163
(0.444) 		0.0678
(0.28) 		0.181
(0.473) 		0.161
(0.442)
ATAD1 8 (2%) 359 0.0382
(0.206) 		0.299
(0.621) 		0.112
(0.366) 		0.413
(0.746) 		0.193
(0.49) 		0.0748
(0.296) 		0.695
(0.987) 		0.616
(0.922)
C6ORF150 9 (2%) 358 0.187
(0.482) 		0.452
(0.786) 		0.289
(0.61) 		0.221
(0.523) 		0.697
(0.988) 		0.598
(0.908) 		0.0105
(0.0963) 		1
(1.00) 		0.223
(0.526) 		0.354
(0.682)
TAB1 3 (1%) 364 0.16
(0.441) 		0.613
(0.92) 		0.76
(1.00) 		0.257
(0.575) 		0.438
(0.774) 		0.469
(0.798) 		0.00102
(0.0252)
NONO 11 (3%) 356 0.367
(0.697) 		0.394
(0.725) 		0.17
(0.456) 		0.457
(0.789) 		0.119
(0.381) 		0.0146
(0.118) 		0.827
(1.00) 		0.184
(0.479) 		0.497
(0.822) 		0.465
(0.795)
SLC16A5 10 (3%) 357 0.24
(0.552) 		0.0516
(0.243) 		0.637
(0.94) 		0.741
(1.00) 		0.029
(0.179) 		0.887
(1.00) 		0.943
(1.00) 		0.306
(0.63) 		0.178
(0.468) 		0.415
(0.749)
ARID4B 11 (3%) 356 0.303
(0.625) 		0.055
(0.25) 		0.425
(0.759) 		0.269
(0.591) 		0.23
(0.535) 		0.0581
(0.257) 		0.0238
(0.16) 		0.311
(0.637) 		0.717
(1.00) 		1
(1.00)
WFDC10B 5 (1%) 362 1
(1.00) 		0.324
(0.648) 		0.85
(1.00) 		0.126
(0.391) 		0.0445
(0.224) 		0.168
(0.453) 		0.55
(0.867) 		0.237
(0.547)
ACTL7B 4 (1%) 363 0.466
(0.796) 		0.79
(1.00) 		0.685
(0.979) 		0.33
(0.655) 		0.595
(0.906) 		0.872
(1.00) 		0.0334
(0.193)
COL4A6 21 (6%) 346 0.766
(1.00) 		0.915
(1.00) 		0.134
(0.405) 		0.402
(0.734) 		0.053
(0.246) 		0.464
(0.795) 		0.354
(0.682) 		0.741
(1.00) 		0.596
(0.907) 		0.0185
(0.137) 		0.375
(0.705) 		0.206
(0.507)
PHKB 12 (3%) 355 0.0152
(0.122) 		0.524
(0.847) 		0.791
(1.00) 		0.953
(1.00) 		0.093
(0.333) 		0.637
(0.939) 		0.354
(0.682) 		0.221
(0.523)
GSTA5 6 (2%) 361 0.595
(0.906) 		0.164
(0.445) 		0.456
(0.788) 		0.686
(0.979) 		0.385
(0.716) 		0.0342
(0.196) 		0.223
(0.525) 		0.96
(1.00)
TMPRSS5 7 (2%) 360 0.122
(0.384) 		0.197
(0.495) 		0.769
(1.00) 		0.641
(0.943) 		0.165
(0.447) 		0.0109
(0.0987) 		0.571
(0.885) 		0.283
(0.608) 		0.462
(0.792) 		0.883
(1.00)
VANGL1 10 (3%) 357 0.429
(0.763) 		0.435
(0.77) 		0.698
(0.99) 		0.885
(1.00) 		0.529
(0.85) 		0.334
(0.659) 		0.0262
(0.169) 		0.327
(0.652)
OR5H1 10 (3%) 357 0.055
(0.25) 		0.156
(0.439) 		0.137
(0.409) 		0.395
(0.726) 		0.733
(1.00) 		0.623
(0.93) 		0.527
(0.849) 		0.218
(0.521) 		0.0876
(0.32) 		0.0267
(0.171) 		0.218
(0.52) 		0.354
(0.682)
VWA5A 12 (3%) 355 0.324
(0.647) 		0.37
(0.699) 		0.165
(0.447) 		0.876
(1.00) 		0.607
(0.915) 		0.904
(1.00) 		0.362
(0.691) 		0.779
(1.00) 		0.372
(0.701) 		0.00147
(0.0318) 		0.0958
(0.337) 		0.144
(0.422)
LIPH 9 (2%) 358 0.0361
(0.201) 		1
(1.00) 		0.339
(0.665) 		0.94
(1.00) 		0.407
(0.739) 		0.341
(0.667) 		0.885
(1.00) 		0.0631
(0.27)
UFSP2 4 (1%) 363 0.0639
(0.272) 		0.513
(0.837) 		0.789
(1.00) 		0.279
(0.604) 		0.246
(0.561) 		0.316
(0.641) 		0.469
(0.797) 		0.0057
(0.0714)
BFAR 8 (2%) 359 0.169
(0.454) 		0.298
(0.619) 		0.00527
(0.0684) 		0.611
(0.919) 		0.554
(0.871) 		0.74
(1.00) 		0.0728
(0.292) 		0.369
(0.698)
LCK 8 (2%) 359 0.0385
(0.206) 		0.68
(0.977) 		0.345
(0.671) 		0.715
(1.00) 		0.896
(1.00) 		0.259
(0.577) 		0.429
(0.763) 		0.662
(0.96) 		0.837
(1.00) 		0.544
(0.86)
C6ORF203 4 (1%) 363 0.0627
(0.269) 		0.793
(1.00) 		0.885
(1.00) 		0.247
(0.563) 		0.317
(0.642) 		0.495
(0.82) 		0.00231
(0.0406)
OR4N2 10 (3%) 357 0.0543
(0.248) 		0.226
(0.531) 		0.538
(0.857) 		0.415
(0.749) 		0.17
(0.456) 		0.0697
(0.285) 		0.0477
(0.234) 		0.0601
(0.263)
LRRTM2 5 (1%) 362 0.25
(0.566) 		0.0716
(0.289) 		0.0163
(0.127) 		0.49
(0.815) 		0.769
(1.00) 		0.116
(0.376) 		0.114
(0.37) 		0.13
(0.397)
TTLL13 5 (1%) 362 0.0639
(0.272) 		0.515
(0.838) 		0.063
(0.27) 		0.085
(0.316) 		0.37
(0.699) 		0.0378
(0.206) 		0.687
(0.98) 		0.246
(0.561)
ZNF350 9 (2%) 358 0.405
(0.737) 		0.211
(0.511) 		0.00084
(0.0221) 		0.107
(0.359) 		0.555
(0.871) 		0.85
(1.00) 		0.168
(0.452) 		0.419
(0.753) 		0.102
(0.348) 		0.208
(0.509)
MYLK4 12 (3%) 355 1
(1.00) 		0.862
(1.00) 		0.49
(0.815) 		0.886
(1.00) 		0.583
(0.893) 		0.158
(0.439) 		0.261
(0.58) 		0.322
(0.646) 		0.029
(0.179) 		1
(1.00)
MORC1 13 (4%) 354 0.113
(0.368) 		0.516
(0.838) 		0.315
(0.64) 		0.137
(0.409) 		0.00401
(0.0569) 		0.364
(0.694) 		1
(1.00) 		0.936
(1.00) 		0.879
(1.00) 		0.253
(0.569)
MIPEP 8 (2%) 359 0.171
(0.456) 		0.272
(0.594) 		0.816
(1.00) 		0.685
(0.979) 		0.276
(0.599) 		0.0431
(0.22) 		0.204
(0.504) 		0.42
(0.754)
CASC4 5 (1%) 362 0.251
(0.566) 		1
(1.00) 		0.374
(0.703) 		0.944
(1.00) 		1
(1.00) 		0.715
(1.00) 		0.562
(0.876) 		0.0435
(0.221)
MPZL1 7 (2%) 360 0.0998
(0.343) 		0.678
(0.975) 		0.445
(0.782) 		0.915
(1.00) 		0.955
(1.00) 		0.0329
(0.191) 		0.237
(0.547) 		0.0788
(0.305) 		0.776
(1.00) 		0.884
(1.00)
KIF14 11 (3%) 356 0.156
(0.439) 		0.197
(0.495) 		0.0164
(0.128) 		0.298
(0.62) 		1
(1.00) 		0.868
(1.00) 		0.461
(0.792) 		0.0651
(0.275) 		0.151
(0.433) 		0.566
(0.88) 		0.957
(1.00) 		0.886
(1.00)
XRCC6 7 (2%) 360 0.0803
(0.308) 		0.86
(1.00) 		0.263
(0.583) 		0.912
(1.00) 		0.166
(0.449) 		0.0166
(0.128) 		0.736
(1.00) 		0.0545
(0.249)
C5 17 (5%) 350 0.916
(1.00) 		0.785
(1.00) 		0.112
(0.367) 		0.0135
(0.113) 		0.594
(0.905) 		0.745
(1.00) 		0.355
(0.683) 		0.547
(0.864) 		0.359
(0.688) 		0.53
(0.852) 		0.351
(0.679) 		0.882
(1.00)
C17ORF71 9 (2%) 358 0.159
(0.44) 		0.196
(0.495) 		0.883
(1.00) 		0.861
(1.00) 		0.908
(1.00) 		0.422
(0.756) 		0.086
(0.318) 		0.0081
(0.0844) 		0.645
(0.947) 		0.332
(0.657) 		0.0757
(0.298) 		0.311
(0.636)
PDK1 5 (1%) 362 0.25
(0.565) 		0.628
(0.932) 		0.851
(1.00) 		0.894
(1.00) 		0.00873
(0.0877) 		0.0804
(0.308) 		0.253
(0.569) 		0.302
(0.625)
SFRP2 8 (2%) 359 0.884
(1.00) 		0.292
(0.614) 		0.284
(0.608) 		0.873
(1.00) 		0.0963
(0.338) 		0.4
(0.731) 		0.0273
(0.172) 		0.119
(0.38)
OR6C1 7 (2%) 360 0.65
(0.951) 		0.264
(0.584) 		0.286
(0.608) 		0.78
(1.00) 		0.039
(0.207) 		0.0523
(0.245) 		0.137
(0.409) 		0.98
(1.00) 		0.15
(0.432) 		0.876
(1.00)
C13ORF23 12 (3%) 355 0.286
(0.608) 		0.451
(0.786) 		0.164
(0.446) 		0.321
(0.646) 		0.426
(0.761) 		0.847
(1.00) 		0.877
(1.00) 		0.173
(0.459) 		0.791
(1.00) 		0.0117
(0.103) 		0.265
(0.585) 		0.685
(0.979)
XKR3 12 (3%) 355 0.0548
(0.249) 		0.155
(0.439) 		0.071
(0.288) 		0.578
(0.891) 		0.0255
(0.166) 		0.764
(1.00) 		0.553
(0.871) 		0.276
(0.599) 		0.541
(0.858) 		0.431
(0.766)
KIAA0196 10 (3%) 357 0.284
(0.608) 		0.451
(0.786) 		0.427
(0.762) 		1
(1.00) 		0.0582
(0.257) 		0.0166
(0.129) 		0.562
(0.876) 		0.09
(0.326) 		0.665
(0.963) 		0.444
(0.781)
MYPN 19 (5%) 348 0.273
(0.596) 		0.613
(0.92) 		0.0212
(0.15) 		0.397
(0.729) 		0.325
(0.649) 		0.129
(0.396) 		0.909
(1.00) 		0.518
(0.84) 		0.418
(0.752) 		0.567
(0.881) 		0.279
(0.604) 		0.708
(0.998)
DTD1 5 (1%) 362 0.666
(0.964) 		0.21
(0.511) 		0.459
(0.791) 		0.296
(0.617) 		0.0446
(0.225) 		0.348
(0.675) 		0.167
(0.451) 		0.289
(0.611) 		0.879
(1.00) 		0.951
(1.00)
PTPRZ1 28 (8%) 339 0.13
(0.397) 		0.0532
(0.247) 		0.0336
(0.193) 		0.955
(1.00) 		0.519
(0.841) 		0.551
(0.868) 		0.502
(0.827) 		0.257
(0.575) 		0.348
(0.674) 		0.156
(0.439) 		0.57
(0.885) 		0.972
(1.00)
CLEC1A 8 (2%) 359 0.0389
(0.207) 		0.516
(0.839) 		0.201
(0.5) 		0.514
(0.837) 		0.702
(0.992) 		0.564
(0.878) 		0.9
(1.00) 		0.874
(1.00) 		0.778
(1.00) 		0.49
(0.815)
CCDC64B 5 (1%) 362 0.466
(0.796) 		1
(1.00) 		0.126
(0.39) 		0.786
(1.00) 		0.48
(0.807) 		0.0997
(0.343) 		0.811
(1.00) 		0.0497
(0.239)
MOGAT3 6 (2%) 361 0.0318
(0.188) 		0.627
(0.932) 		0.768
(1.00) 		0.571
(0.885) 		0.181
(0.474) 		0.253
(0.569) 		0.31
(0.634) 		0.0671
(0.28)
ERCC6L 12 (3%) 355 0.236
(0.546) 		0.0508
(0.242) 		0.0152
(0.121) 		0.395
(0.727) 		0.598
(0.908) 		0.65
(0.95) 		0.364
(0.693) 		0.0649
(0.275) 		0.908
(1.00) 		0.6
(0.91)
GAB3 11 (3%) 356 0.443
(0.78) 		0.566
(0.88) 		0.00338
(0.0513) 		0.446
(0.782) 		0.911
(1.00) 		0.753
(1.00) 		0.561
(0.875) 		0.657
(0.955) 		0.825
(1.00) 		0.346
(0.672) 		0.88
(1.00) 		0.835
(1.00)
HIST4H4 3 (1%) 364 0.723
(1.00) 		0.776
(1.00) 		0.0148
(0.12) 		0.225
(0.528) 		0.184
(0.478) 		0.317
(0.642)
CAPZA3 9 (2%) 358 0.58
(0.891) 		0.456
(0.788) 		0.286
(0.608) 		0.0129
(0.109) 		0.467
(0.796) 		0.145
(0.423) 		0.112
(0.367) 		0.367
(0.697) 		0.157
(0.439) 		0.756
(1.00)
MC3R 13 (4%) 354 0.515
(0.838) 		0.345
(0.671) 		0.675
(0.973) 		0.675
(0.973) 		0.149
(0.43) 		0.0824
(0.312) 		0.178
(0.467) 		0.00304
(0.0478) 		0.801
(1.00) 		0.209
(0.51)
ITGA9 9 (2%) 358 0.238
(0.55) 		0.812
(1.00) 		0.043
(0.22) 		0.742
(1.00) 		0.894
(1.00) 		0.17
(0.456) 		0.805
(1.00) 		0.615
(0.921) 		0.769
(1.00) 		0.51
(0.836) 		0.955
(1.00) 		0.695
(0.987)
COPB2 13 (4%) 354 0.268
(0.589) 		0.812
(1.00) 		0.614
(0.921) 		0.914
(1.00) 		0.243
(0.557) 		0.709
(0.998) 		0.429
(0.763) 		0.212
(0.513) 		0.555
(0.871) 		0.00116
(0.0273) 		0.659
(0.957) 		0.951
(1.00)
KRT1 14 (4%) 353 0.0674
(0.28) 		0.452
(0.786) 		0.0335
(0.193) 		0.539
(0.858) 		0.42
(0.754) 		0.226
(0.53) 		0.079
(0.305) 		0.0719
(0.29) 		0.485
(0.813) 		0.0733
(0.293) 		0.219
(0.521) 		0.579
(0.891)
NDC80 8 (2%) 359 0.171
(0.457) 		1
(1.00) 		0.00669
(0.0765) 		0.892
(1.00) 		0.894
(1.00) 		0.472
(0.801) 		0.187
(0.483) 		0.306
(0.63)
ZNF232 4 (1%) 363 0.465
(0.795) 		1
(1.00) 		0.128
(0.394) 		0.851
(1.00) 		0.0353
(0.199) 		0.266
(0.586) 		0.634
(0.937) 		0.602
(0.911)
PRSS35 12 (3%) 355 0.606
(0.915) 		0.562
(0.876) 		0.2
(0.498) 		0.0127
(0.108) 		0.0883
(0.322) 		0.749
(1.00) 		0.86
(1.00) 		0.491
(0.816) 		0.98
(1.00) 		0.411
(0.744)
SIRT4 6 (2%) 361 0.189
(0.485) 		0.152
(0.435) 		0.0115
(0.102) 		0.513
(0.837) 		0.372
(0.701) 		0.679
(0.976) 		0.42
(0.754) 		0.0577
(0.256) 		0.388
(0.718) 		0.272
(0.594)
OLFM1 11 (3%) 356 0.186
(0.481) 		0.454
(0.787) 		0.301
(0.624) 		0.229
(0.535) 		0.92
(1.00) 		0.467
(0.796) 		0.144
(0.422) 		0.376
(0.707) 		0.462
(0.792) 		0.0138
(0.114) 		0.779
(1.00) 		0.492
(0.817)
CLGN 11 (3%) 356 0.0254
(0.166) 		0.162
(0.444) 		0.608
(0.917) 		0.745
(1.00) 		0.229
(0.535) 		0.576
(0.89) 		0.173
(0.46) 		0.389
(0.72)
EHBP1L1 7 (2%) 360 0.383
(0.715) 		0.271
(0.594) 		0.373
(0.702) 		0.8
(1.00) 		0.305
(0.628) 		0.00938
(0.091) 		0.265
(0.586) 		0.141
(0.415)
TIPARP 5 (1%) 362 0.186
(0.481) 		0.452
(0.786) 		0.0327
(0.191) 		0.682
(0.977) 		0.906
(1.00) 		0.478
(0.805) 		0.196
(0.495) 		0.805
(1.00) 		0.55
(0.867)
POLA1 9 (2%) 358 0.784
(1.00) 		1
(1.00) 		0.635
(0.938) 		0.327
(0.651) 		0.115
(0.372) 		0.122
(0.383) 		0.359
(0.688) 		0.686
(0.979) 		0.366
(0.696) 		0.0358
(0.2)
SAPS3 11 (3%) 356 0.285
(0.608) 		0.156
(0.439) 		0.011
(0.0993) 		0.795
(1.00) 		0.292
(0.614) 		0.422
(0.756) 		0.261
(0.581) 		0.132
(0.402) 		0.256
(0.574) 		0.656
(0.954) 		0.944
(1.00) 		0.362
(0.691)
FAAH2 11 (3%) 356 0.34
(0.666) 		0.321
(0.646) 		0.663
(0.96) 		0.283
(0.608) 		0.256
(0.573) 		0.00293
(0.0469) 		0.0976
(0.34) 		0.191
(0.487) 		0.537
(0.857) 		0.318
(0.645)
CHGB 12 (3%) 355 0.156
(0.439) 		0.198
(0.495) 		0.0404
(0.211) 		0.902
(1.00) 		0.192
(0.488) 		0.819
(1.00) 		0.35
(0.678) 		0.571
(0.885) 		0.328
(0.652) 		0.163
(0.444)
PPP2R2B 8 (2%) 359 0.17
(0.456) 		0.399
(0.731) 		1
(1.00) 		0.777
(1.00) 		0.193
(0.491) 		0.00149
(0.032) 		0.725
(1.00) 		0.0562
(0.252) 		0.153
(0.437) 		0.175
(0.464)
BATF3 4 (1%) 363 0.0948
(0.335) 		0.295
(0.617) 		0.827
(1.00) 		0.944
(1.00) 		0.0659
(0.278) 		0.739
(1.00) 		0.632
(0.936) 		0.00398
(0.0566)
SEC23IP 16 (4%) 351 0.0748
(0.296) 		0.0672
(0.28) 		0.0561
(0.252) 		0.339
(0.666) 		0.338
(0.664) 		0.608
(0.917) 		0.611
(0.918) 		0.18
(0.471) 		0.638
(0.941) 		0.428
(0.763) 		0.00618
(0.0738) 		0.884
(1.00)
GIMAP5 6 (2%) 361 0.784
(1.00) 		0.198
(0.496) 		0.596
(0.907) 		1
(1.00) 		0.982
(1.00) 		0.458
(0.79) 		0.0461
(0.229) 		0.766
(1.00) 		0.531
(0.853)
TMEM171 5 (1%) 362 0.032
(0.188) 		0.294
(0.616) 		0.0881
(0.321) 		0.753
(1.00) 		0.124
(0.386) 		0.59
(0.902) 		0.292
(0.614) 		0.785
(1.00)
GPSM2 12 (3%) 355 0.00823
(0.085) 		0.176
(0.465) 		0.928
(1.00) 		0.922
(1.00) 		0.173
(0.459) 		0.193
(0.49) 		0.0766
(0.3) 		0.727
(1.00) 		1
(1.00) 		1
(1.00)
KMO 12 (3%) 355 0.285
(0.608) 		0.157
(0.439) 		0.0402
(0.21) 		0.632
(0.935) 		0.697
(0.988) 		0.905
(1.00) 		0.627
(0.932) 		0.532
(0.854) 		0.716
(1.00) 		0.963
(1.00) 		0.295
(0.616) 		0.992
(1.00)
FKBP5 6 (2%) 361 0.133
(0.404) 		0.863
(1.00) 		0.137
(0.409) 		0.779
(1.00) 		0.095
(0.336) 		0.0415
(0.215) 		0.225
(0.529) 		0.0684
(0.282)
GABRG2 14 (4%) 353 0.0299
(0.182) 		0.319
(0.646) 		0.8
(1.00) 		0.485
(0.813) 		0.791
(1.00) 		0.703
(0.993) 		0.581
(0.891) 		0.54
(0.858) 		0.952
(1.00) 		0.472
(0.801) 		1
(1.00) 		0.362
(0.69)
CD84 9 (2%) 358 0.037
(0.205) 		0.299
(0.62) 		0.554
(0.871) 		0.645
(0.946) 		0.385
(0.716) 		0.272
(0.595) 		0.691
(0.983) 		0.793
(1.00)
PRKD1 24 (7%) 343 0.11
(0.364) 		0.366
(0.696) 		0.00712
(0.0791) 		0.685
(0.979) 		0.918
(1.00) 		0.876
(1.00) 		0.57
(0.885) 		0.613
(0.92) 		0.981
(1.00) 		0.943
(1.00) 		0.659
(0.957) 		0.834
(1.00)
SCNN1G 9 (2%) 358 0.639
(0.941) 		0.206
(0.507) 		0.277
(0.601) 		0.915
(1.00) 		0.406
(0.738) 		0.0345
(0.196) 		0.167
(0.45) 		0.181
(0.473)
SLC19A2 7 (2%) 360 0.579
(0.891) 		1
(1.00) 		0.124
(0.386) 		0.331
(0.656) 		0.682
(0.977) 		0.455
(0.788) 		0.284
(0.608) 		0.539
(0.858) 		0.649
(0.95) 		0.00625
(0.0742)
ZNF521 28 (8%) 339 0.129
(0.395) 		0.614
(0.92) 		0.0105
(0.0961) 		0.0651
(0.275) 		0.128
(0.395) 		0.331
(0.657) 		0.329
(0.654) 		0.151
(0.433) 		0.186
(0.481) 		0.0526
(0.245) 		0.561
(0.875) 		0.264
(0.585)
FAM133A 11 (3%) 356 0.406
(0.738) 		0.857
(1.00) 		0.0106
(0.0971) 		0.163
(0.445) 		0.153
(0.436) 		0.421
(0.755) 		0.458
(0.791) 		0.914
(1.00) 		0.754
(1.00) 		0.226
(0.531)
RAG1 14 (4%) 353 0.325
(0.649) 		0.561
(0.875) 		0.00878
(0.088) 		0.326
(0.65) 		0.104
(0.352) 		0.144
(0.42) 		0.578
(0.891) 		0.525
(0.848) 		0.246
(0.561) 		0.181
(0.474) 		0.095
(0.336) 		0.837
(1.00)
ENGASE 4 (1%) 363 0.161
(0.443) 		0.295
(0.616) 		0.0533
(0.247) 		0.593
(0.905) 		0.392
(0.723) 		0.0266
(0.171) 		0.633
(0.936) 		0.486
(0.814)
TMEM20 3 (1%) 364 0.161
(0.443) 		1
(1.00) 		0.745
(1.00) 		0.539
(0.858) 		0.017
(0.13) 		0.718
(1.00) 		0.337
(0.663)
SAMD11 6 (2%) 361 0.216
(0.518) 		0.688
(0.981) 		1
(1.00) 		0.517
(0.839) 		0.182
(0.475) 		0.0263
(0.169) 		0.673
(0.97) 		0.177
(0.467)
RHOA 12 (3%) 355 0.913
(1.00) 		0.741
(1.00) 		1
(1.00) 		0.83
(1.00) 		0.912
(1.00) 		0.211
(0.511) 		0.909
(1.00) 		0.713
(1.00) 		0.243
(0.557) 		0.309
(0.633)
KIAA1586 11 (3%) 356 0.0546
(0.249) 		0.158
(0.439) 		0.0561
(0.252) 		0.489
(0.815) 		0.911
(1.00) 		0.376
(0.706) 		0.411
(0.744) 		0.643
(0.945) 		0.926
(1.00) 		0.265
(0.585) 		0.114
(0.37) 		0.857
(1.00)
IQCD 10 (3%) 357 0.428
(0.763) 		0.437
(0.772) 		0.908
(1.00) 		0.252
(0.568) 		0.0911
(0.329) 		0.0794
(0.306) 		0.503
(0.828) 		0.618
(0.925) 		0.63
(0.934) 		0.7
(0.99)
RLIM 14 (4%) 353 0.543
(0.86) 		0.574
(0.888) 		0.37
(0.699) 		0.359
(0.687) 		0.0777
(0.302) 		0.0813
(0.31) 		0.245
(0.559) 		0.135
(0.406) 		0.943
(1.00) 		0.119
(0.38)
CYSLTR2 15 (4%) 352 0.58
(0.891) 		0.451
(0.786) 		0.242
(0.556) 		1
(1.00) 		0.589
(0.9) 		0.278
(0.601) 		0.371
(0.7) 		0.538
(0.857) 		0.286
(0.608) 		0.275
(0.598) 		0.059
(0.259) 		0.6
(0.91)
ATG5 8 (2%) 359 0.786
(1.00) 		0.379
(0.711) 		1
(1.00) 		0.387
(0.718) 		0.177
(0.467) 		0.167
(0.451) 		0.219
(0.522) 		0.107
(0.359)
PTGDR 7 (2%) 360 1
(1.00) 		0.508
(0.834) 		0.196
(0.495) 		0.467
(0.796) 		0.955
(1.00) 		0.521
(0.843) 		0.321
(0.646) 		0.916
(1.00)
SLK 23 (6%) 344 0.157
(0.439) 		0.58
(0.891) 		0.134
(0.404) 		0.646
(0.947) 		0.276
(0.6) 		0.731
(1.00) 		0.356
(0.684) 		0.2
(0.499) 		0.0643
(0.273) 		0.441
(0.778) 		0.636
(0.939) 		0.431
(0.766)
UQCRC2 8 (2%) 359 0.883
(1.00) 		0.205
(0.505) 		0.768
(1.00) 		0.597
(0.907) 		0.267
(0.588) 		0.826
(1.00) 		0.17
(0.455) 		0.152
(0.435)
OR5V1 14 (4%) 353 0.434
(0.769) 		0.573
(0.887) 		0.0677
(0.28) 		0.467
(0.796) 		0.32
(0.646) 		0.117
(0.378) 		0.106
(0.356) 		0.148
(0.429)
NOTCH2NL 6 (2%) 361 0.491
(0.816) 		0.686
(0.979) 		0.501
(0.826) 		0.667
(0.965) 		0.183
(0.477) 		0.782
(1.00) 		0.855
(1.00) 		0.683
(0.977)
WDR78 12 (3%) 355 0.285
(0.608) 		0.453
(0.786) 		0.0714
(0.289) 		0.159
(0.439) 		0.0756
(0.298) 		0.434
(0.769) 		0.256
(0.574) 		0.705
(0.996) 		0.187
(0.482) 		0.997
(1.00)
KIAA1012 23 (6%) 344 0.164
(0.446) 		0.0863
(0.319) 		0.288
(0.609) 		0.458
(0.79) 		0.0844
(0.315) 		0.638
(0.941) 		0.623
(0.93) 		0.17
(0.456) 		0.33
(0.654) 		0.321
(0.646) 		0.668
(0.965) 		0.652
(0.951)
HNF1B 9 (2%) 358 0.794
(1.00) 		0.0964
(0.338) 		0.664
(0.962) 		0.168
(0.452) 		0.198
(0.496) 		0.206
(0.507) 		0.0584
(0.258) 		0.186
(0.481) 		0.777
(1.00) 		0.242
(0.555)
OR7C2 10 (3%) 357 0.22
(0.522) 		0.822
(1.00) 		0.0685
(0.282) 		0.558
(0.873) 		0.467
(0.796) 		0.185
(0.48) 		0.281
(0.606) 		0.157
(0.439)
GPX6 9 (2%) 358 0.288
(0.609) 		0.453
(0.786) 		0.571
(0.885) 		0.869
(1.00) 		1
(1.00) 		0.835
(1.00) 		0.544
(0.86) 		0.398
(0.73) 		0.152
(0.435) 		0.313
(0.638)
BIRC3 11 (3%) 356 0.286
(0.608) 		0.456
(0.788) 		0.334
(0.659) 		1
(1.00) 		0.815
(1.00) 		0.945
(1.00) 		0.95
(1.00) 		0.222
(0.525) 		0.455
(0.787) 		0.0573
(0.255) 		0.879
(1.00) 		0.64
(0.943)
ZNF473 14 (4%) 353 0.404
(0.736) 		0.0503
(0.241) 		0.198
(0.496) 		1
(1.00) 		0.33
(0.655) 		0.743
(1.00) 		0.946
(1.00) 		0.121
(0.383) 		0.59
(0.902) 		0.957
(1.00) 		0.596
(0.907) 		0.721
(1.00)
SLAMF7 11 (3%) 356 0.304
(0.626) 		0.177
(0.467) 		0.774
(1.00) 		0.993
(1.00) 		0.162
(0.444) 		0.472
(0.801) 		0.34
(0.667) 		0.564
(0.877)
RBPJ 15 (4%) 352 0.578
(0.891) 		0.455
(0.787) 		0.285
(0.608) 		0.771
(1.00) 		0.891
(1.00) 		0.414
(0.748) 		0.275
(0.599) 		0.107
(0.359) 		0.212
(0.513) 		0.606
(0.915) 		0.601
(0.91) 		0.954
(1.00)
ADAM28 17 (5%) 350 0.286
(0.608) 		0.158
(0.439) 		0.13
(0.397) 		0.613
(0.92) 		0.688
(0.98) 		0.296
(0.617) 		0.676
(0.973) 		0.143
(0.419) 		0.891
(1.00) 		0.7
(0.99) 		1
(1.00) 		0.489
(0.815)
COLEC10 8 (2%) 359 0.594
(0.906) 		0.328
(0.652) 		1
(1.00) 		0.728
(1.00) 		0.588
(0.899) 		0.182
(0.475) 		0.0699
(0.285) 		0.16
(0.441)
SCLY 11 (3%) 356 0.578
(0.891) 		0.154
(0.438) 		0.365
(0.694) 		0.762
(1.00) 		0.71
(0.999) 		0.274
(0.597) 		0.596
(0.907) 		0.122
(0.384) 		0.827
(1.00) 		0.0504
(0.241) 		0.126
(0.391) 		0.355
(0.683)
HM13 5 (1%) 362 0.665
(0.963) 		0.0708
(0.287) 		0.453
(0.786) 		0.694
(0.986) 		0.772
(1.00) 		0.0668
(0.279) 		0.397
(0.729) 		0.322
(0.646)
OVGP1 14 (4%) 353 0.431
(0.766) 		0.934
(1.00) 		0.857
(1.00) 		0.611
(0.919) 		0.79
(1.00) 		0.737
(1.00) 		0.184
(0.478) 		0.424
(0.759) 		0.67
(0.968) 		0.8
(1.00)
IVL 17 (5%) 350 0.883
(1.00) 		0.529
(0.851) 		0.605
(0.914) 		0.266
(0.586) 		0.313
(0.638) 		0.103
(0.351) 		0.193
(0.49) 		0.238
(0.549) 		0.332
(0.657) 		0.273
(0.596)
PDCD5 8 (2%) 359 0.0868
(0.32) 		0.796
(1.00) 		0.707
(0.997) 		0.829
(1.00) 		0.193
(0.491) 		0.431
(0.766) 		0.274
(0.597) 		0.577
(0.891)
TRIM32 12 (3%) 355 0.406
(0.739) 		0.323
(0.647) 		0.163
(0.445) 		0.446
(0.782) 		0.61
(0.918) 		0.291
(0.612) 		0.978
(1.00) 		0.13
(0.398) 		0.818
(1.00) 		0.0791
(0.305) 		0.763
(1.00) 		0.72
(1.00)
STBD1 6 (2%) 361 0.85
(1.00) 		0.166
(0.448) 		1
(1.00) 		0.845
(1.00) 		0.675
(0.973) 		0.127
(0.393) 		0.0946
(0.335) 		0.591
(0.902)
RBM7 10 (3%) 357 0.222
(0.525) 		1
(1.00) 		0.0675
(0.28) 		0.846
(1.00) 		0.468
(0.796) 		0.216
(0.518) 		0.799
(1.00) 		0.606
(0.915) 		0.129
(0.395) 		0.103
(0.352)
TNFRSF9 9 (2%) 358 0.215
(0.516) 		1
(1.00) 		0.111
(0.366) 		0.365
(0.694) 		0.723
(1.00) 		0.521
(0.843) 		0.896
(1.00) 		0.873
(1.00)
WNT16 8 (2%) 359 0.171
(0.457) 		0.298
(0.62) 		0.767
(1.00) 		0.917
(1.00) 		0.454
(0.786) 		0.25
(0.566) 		0.647
(0.948) 		0.181
(0.474)
HMG20A 13 (4%) 354 0.95
(1.00) 		0.471
(0.8) 		0.167
(0.451) 		0.322
(0.646) 		0.456
(0.788) 		0.515
(0.838) 		0.218
(0.52) 		0.871
(1.00) 		1
(1.00) 		0.45
(0.786) 		0.776
(1.00) 		0.885
(1.00)
ETF1 10 (3%) 357 0.137
(0.409) 		0.0764
(0.299) 		0.733
(1.00) 		0.707
(0.997) 		0.574
(0.888) 		0.141
(0.416) 		0.198
(0.496) 		0.625
(0.931)
PRB4 10 (3%) 357 0.168
(0.452) 		0.237
(0.548) 		0.664
(0.962) 		0.452
(0.786) 		0.424
(0.758) 		0.105
(0.356) 		0.0821
(0.311) 		0.0521
(0.245) 		0.434
(0.769) 		0.753
(1.00) 		1
(1.00) 		0.534
(0.855)
MAGEC1 28 (8%) 339 0.178
(0.468) 		0.204
(0.503) 		0.32
(0.646) 		0.542
(0.859) 		0.916
(1.00) 		0.36
(0.688) 		0.841
(1.00) 		0.626
(0.932) 		0.523
(0.845) 		0.369
(0.698) 		0.31
(0.635) 		0.157
(0.439)
OR2T33 16 (4%) 351 0.0997
(0.343) 		0.812
(1.00) 		0.473
(0.801) 		0.222
(0.525) 		0.679
(0.976) 		0.962
(1.00) 		0.748
(1.00) 		0.442
(0.779) 		0.962
(1.00) 		0.61
(0.918)
ANAPC4 10 (3%) 357 0.736
(1.00) 		0.913
(1.00) 		0.76
(1.00) 		0.0791
(0.305) 		0.291
(0.613) 		0.0758
(0.298) 		0.188
(0.484) 		0.167
(0.451) 		0.955
(1.00) 		0.886
(1.00)
FAM134A 8 (2%) 359 0.491
(0.816) 		0.156
(0.439) 		0.338
(0.664) 		0.376
(0.707) 		0.197
(0.495) 		0.37
(0.699) 		0.127
(0.393) 		0.177
(0.466) 		0.333
(0.658) 		0.284
(0.608)
ZKSCAN2 13 (4%) 354 0.0748
(0.296) 		0.0691
(0.283) 		0.231
(0.538) 		0.904
(1.00) 		0.341
(0.667) 		0.486
(0.814) 		0.942
(1.00) 		0.0518
(0.244) 		0.746
(1.00) 		0.473
(0.801) 		0.191
(0.488) 		0.361
(0.689)
PARP12 9 (2%) 358 0.212
(0.513) 		0.397
(0.729) 		0.202
(0.5) 		0.284
(0.608) 		0.405
(0.736) 		0.0682
(0.282) 		0.164
(0.446) 		0.397
(0.729) 		0.654
(0.953) 		0.49
(0.815)
GOLPH3L 5 (1%) 362 0.821
(1.00) 		1
(1.00) 		0.626
(0.932) 		0.433
(0.769) 		0.77
(1.00) 		0.307
(0.63) 		0.965
(1.00) 		0.985
(1.00)
ZNF438 12 (3%) 355 0.165
(0.448) 		0.513
(0.837) 		0.248
(0.563) 		0.593
(0.904) 		0.699
(0.99) 		0.276
(0.599) 		0.0565
(0.253) 		0.0512
(0.243)
INPP1 7 (2%) 360 0.877
(1.00) 		1
(1.00) 		0.766
(1.00) 		0.972
(1.00) 		0.482
(0.81) 		0.899
(1.00) 		0.384
(0.715) 		0.285
(0.608)
RNF160 16 (4%) 351 0.782
(1.00) 		0.197
(0.495) 		0.0553
(0.25) 		0.926
(1.00) 		0.104
(0.353) 		0.812
(1.00) 		0.984
(1.00) 		0.272
(0.595) 		0.147
(0.426) 		0.333
(0.657) 		0.881
(1.00) 		0.312
(0.637)
ZNF708 12 (3%) 355 0.188
(0.484) 		1
(1.00) 		0.163
(0.444) 		0.694
(0.987) 		0.57
(0.885) 		0.804
(1.00) 		0.913
(1.00) 		0.122
(0.383) 		0.207
(0.507) 		0.337
(0.663)
ZNF189 17 (5%) 350 0.762
(1.00) 		0.417
(0.751) 		0.205
(0.505) 		0.295
(0.617) 		0.313
(0.638) 		0.135
(0.406) 		0.12
(0.381) 		0.581
(0.891)
NRAS 33 (9%) 334 0.0984
(0.341) 		0.339
(0.666) 		0.226
(0.531) 		0.644
(0.945) 		0.831
(1.00) 		0.477
(0.805) 		0.915
(1.00) 		0.879
(1.00) 		0.831
(1.00) 		0.94
(1.00) 		0.821
(1.00) 		0.905
(1.00)
OR11G2 5 (1%) 362 0.428
(0.763) 		0.158
(0.439) 		0.371
(0.7) 		0.844
(1.00) 		0.538
(0.857) 		0.0767
(0.3) 		0.659
(0.957) 		0.696
(0.988)
TRIM23 11 (3%) 356 0.0542
(0.248) 		0.155
(0.439) 		0.755
(1.00) 		0.17
(0.456) 		0.25
(0.565) 		0.297
(0.618) 		0.594
(0.905) 		0.0631
(0.27) 		0.344
(0.67) 		0.177
(0.466)
TXNDC15 6 (2%) 361 1
(1.00) 		1
(1.00) 		0.137
(0.409) 		0.415
(0.749) 		0.583
(0.893) 		0.201
(0.5) 		0.521
(0.843) 		0.477
(0.805)
SP110 10 (3%) 357 0.535
(0.856) 		0.836
(1.00) 		0.154
(0.438) 		0.356
(0.685) 		0.252
(0.568) 		0.0718
(0.29) 		0.165
(0.447) 		0.337
(0.663)
KPNA5 11 (3%) 356 0.536
(0.856) 		0.793
(1.00) 		1
(1.00) 		0.539
(0.858) 		0.57
(0.885) 		0.316
(0.642) 		0.427
(0.762) 		0.214
(0.515) 		0.297
(0.618) 		0.177
(0.466)
KIR2DL3 19 (5%) 348 0.94
(1.00) 		0.386
(0.717) 		0.304
(0.628) 		0.738
(1.00) 		0.301
(0.624) 		0.178
(0.468) 		0.0868
(0.32) 		0.871
(1.00) 		0.415
(0.749) 		0.924
(1.00)
RAB6C 5 (1%) 362 0.818
(1.00) 		0.862
(1.00) 		0.296
(0.617) 		0.22
(0.523) 		0.13
(0.397) 		0.148
(0.428)
NUP54 8 (2%) 359 0.0592
(0.26) 		0.795
(1.00) 		0.815
(1.00) 		0.646
(0.947) 		0.294
(0.616) 		0.738
(1.00) 		1
(1.00) 		0.241
(0.554) 		0.955
(1.00) 		0.967
(1.00)
C6ORF89 6 (2%) 361 0.0545
(0.249) 		0.155
(0.438) 		0.216
(0.518) 		0.201
(0.5) 		0.56
(0.875) 		0.794
(1.00) 		0.503
(0.828) 		0.12
(0.382) 		0.566
(0.879) 		0.904
(1.00) 		0.417
(0.751) 		0.924
(1.00)
TIFA 6 (2%) 361 0.725
(1.00) 		0.533
(0.855) 		1
(1.00) 		0.733
(1.00) 		0.808
(1.00) 		0.601
(0.91) 		0.325
(0.648) 		0.251
(0.566)
IGFBP7 4 (1%) 363 1
(1.00) 		0.402
(0.734) 		0.294
(0.616) 		0.483
(0.811) 		0.549
(0.866) 		0.0921
(0.331) 		0.214
(0.516) 		0.406
(0.738)
PRAMEF12 5 (1%) 362 0.819
(1.00) 		0.841
(1.00) 		0.303
(0.626) 		0.639
(0.942) 		0.54
(0.858) 		0.225
(0.529) 		0.905
(1.00) 		0.0532
(0.247) 		0.19
(0.486) 		0.147
(0.428)
C1ORF59 10 (3%) 357 1
(1.00) 		0.269
(0.591) 		0.343
(0.669) 		0.615
(0.921) 		0.683
(0.977) 		0.216
(0.517) 		0.146
(0.425) 		0.796
(1.00) 		0.747
(1.00) 		0.356
(0.684)
FUT10 6 (2%) 361 0.49
(0.815) 		0.861
(1.00) 		0.826
(1.00) 		0.384
(0.715) 		0.236
(0.546) 		0.497
(0.823) 		0.163
(0.444) 		0.536
(0.856)
GAB2 9 (2%) 358 0.51
(0.836) 		1
(1.00) 		0.0677
(0.28) 		0.577
(0.89) 		0.721
(1.00) 		0.834
(1.00) 		0.399
(0.731) 		0.577
(0.89) 		0.19
(0.486) 		0.61
(0.918)
NTRK3 25 (7%) 342 0.056
(0.251) 		0.786
(1.00) 		0.206
(0.507) 		0.691
(0.983) 		0.788
(1.00) 		0.632
(0.936) 		0.67
(0.968) 		0.0691
(0.283) 		0.487
(0.814) 		0.603
(0.912) 		0.729
(1.00) 		0.918
(1.00)
GATA3 16 (4%) 351 0.583
(0.893) 		0.453
(0.786) 		0.36
(0.688) 		0.344
(0.67) 		0.225
(0.529) 		0.119
(0.38) 		0.141
(0.415) 		0.0703
(0.286) 		0.127
(0.393) 		0.459
(0.791) 		0.46
(0.792) 		0.967
(1.00)
CLVS2 9 (2%) 358 0.184
(0.478) 		0.71
(0.999) 		1
(1.00) 		0.573
(0.887) 		0.628
(0.933) 		0.0685
(0.282) 		0.17
(0.456) 		0.169
(0.454)
HFE2 8 (2%) 359 0.756
(1.00) 		0.0575
(0.256) 		0.895
(1.00) 		0.313
(0.638) 		0.356
(0.684) 		0.0814
(0.31) 		0.68
(0.977) 		0.408
(0.74)
GRM7 25 (7%) 342 0.634
(0.937) 		0.896
(1.00) 		0.0527
(0.246) 		0.526
(0.849) 		0.19
(0.485) 		0.415
(0.749) 		0.32
(0.646) 		0.163
(0.445) 		0.198
(0.496) 		0.14
(0.413) 		0.36
(0.689) 		0.679
(0.976)
TAF1 22 (6%) 345 0.253
(0.569) 		0.208
(0.509) 		0.225
(0.529) 		0.266
(0.587) 		0.0616
(0.267) 		0.509
(0.835) 		0.487
(0.814) 		0.192
(0.488) 		0.879
(1.00) 		0.119
(0.38) 		0.755
(1.00) 		0.656
(0.955)
MAP9 16 (4%) 351 0.284
(0.608) 		0.451
(0.786) 		0.114
(0.37) 		0.242
(0.555) 		0.191
(0.487) 		0.452
(0.786) 		0.455
(0.788) 		0.0888
(0.323) 		0.0615
(0.266) 		0.0705
(0.287) 		0.0954
(0.336) 		0.838
(1.00)
NUDCD1 9 (2%) 358 0.289
(0.61) 		0.155
(0.439) 		0.636
(0.939) 		0.681
(0.977) 		0.0504
(0.241) 		0.634
(0.937) 		1
(1.00) 		0.209
(0.51) 		0.538
(0.857) 		0.112
(0.367) 		0.879
(1.00) 		0.836
(1.00)
NFATC3 12 (3%) 355 0.5
(0.825) 		0.915
(1.00) 		0.792
(1.00) 		0.364
(0.693) 		0.913
(1.00) 		0.919
(1.00) 		0.247
(0.562) 		0.1
(0.345)
VCX2 7 (2%) 360 0.55
(0.867) 		0.346
(0.673) 		0.895
(1.00) 		0.493
(0.818) 		0.102
(0.347) 		0.0511
(0.243) 		0.199
(0.497) 		0.434
(0.769) 		0.577
(0.891) 		0.835
(1.00)
HDAC1 5 (1%) 362 0.467
(0.796) 		0.11
(0.364) 		0.457
(0.789) 		0.249
(0.565) 		0.188
(0.484) 		0.0918
(0.33) 		0.156
(0.439) 		0.305
(0.628)
LPCAT3 5 (1%) 362 0.668
(0.965) 		0.293
(0.615) 		0.293
(0.615) 		0.605
(0.914) 		0.367
(0.697) 		0.434
(0.769) 		0.159
(0.44) 		0.64
(0.943) 		0.653
(0.952) 		0.489
(0.815)
SP4 12 (3%) 355 0.287
(0.608) 		0.453
(0.786) 		0.0643
(0.273) 		0.632
(0.935) 		0.699
(0.99) 		0.529
(0.851) 		0.556
(0.871) 		0.125
(0.389) 		0.066
(0.278) 		0.369
(0.698) 		0.955
(1.00) 		0.885
(1.00)
EIF4A2 10 (3%) 357 0.516
(0.839) 		0.275
(0.598) 		0.898
(1.00) 		0.164
(0.446) 		0.575
(0.889) 		0.384
(0.715) 		0.505
(0.831) 		0.287
(0.608) 		0.3
(0.623) 		0.0548
(0.249)
DMRTB1 6 (2%) 361 0.216
(0.517) 		0.628
(0.932) 		0.0848
(0.316) 		0.643
(0.944) 		0.321
(0.646) 		0.0852
(0.317) 		0.196
(0.495) 		0.37
(0.699)
HIST1H1C 4 (1%) 363 0.0933
(0.333) 		0.518
(0.84) 		0.183
(0.477) 		0.0602
(0.263) 		0.651
(0.951) 		1
(1.00) 		0.561
(0.875) 		0.562
(0.876)
PI4K2B 10 (3%) 357 0.663
(0.961) 		0.837
(1.00) 		0.388
(0.718) 		0.489
(0.815) 		0.125
(0.39) 		0.0719
(0.29) 		0.262
(0.582) 		0.444
(0.781)
OLR1 9 (2%) 358 0.795
(1.00) 		0.743
(1.00) 		1
(1.00) 		0.441
(0.778) 		0.627
(0.932) 		0.0748
(0.296) 		0.632
(0.936) 		0.525
(0.847) 		0.667
(0.965) 		0.699
(0.99)
NEUROD1 8 (2%) 359 0.512
(0.837) 		0.219
(0.521) 		0.6
(0.909) 		0.823
(1.00) 		0.239
(0.551) 		0.685
(0.979) 		0.206
(0.506) 		0.548
(0.865)
MIER1 6 (2%) 361 1
(1.00) 		1
(1.00) 		1
(1.00) 		0.901
(1.00) 		0.673
(0.97) 		0.599
(0.909) 		0.947
(1.00) 		0.329
(0.654)
ERGIC1 4 (1%) 363 0.339
(0.665) 		1
(1.00) 		0.296
(0.617) 		0.945
(1.00) 		0.196
(0.495) 		0.111
(0.365) 		0.368
(0.697) 		0.447
(0.784)
BACE2 10 (3%) 357 0.188
(0.484) 		0.452
(0.786) 		0.0548
(0.249) 		1
(1.00) 		1
(1.00) 		0.167
(0.451) 		0.51
(0.836) 		0.373
(0.702) 		0.0606
(0.264) 		0.164
(0.445) 		0.579
(0.891) 		0.836
(1.00)
ZNF547 8 (2%) 359 0.783
(1.00) 		0.904
(1.00) 		0.133
(0.404) 		0.784
(1.00) 		0.0956
(0.336) 		0.0778
(0.302) 		0.541
(0.858) 		0.223
(0.525)
MRAS 4 (1%) 363 0.337
(0.663) 		1
(1.00) 		0.457
(0.79) 		0.506
(0.832) 		0.773
(1.00) 		0.331
(0.656) 		0.535
(0.856) 		0.229
(0.535)
CNTFR 10 (3%) 357 0.335
(0.66) 		1
(1.00) 		0.0515
(0.243) 		0.352
(0.68) 		0.681
(0.977) 		0.64
(0.942) 		0.0757
(0.298) 		0.646
(0.947) 		0.127
(0.393) 		0.491
(0.816)
DDX3X 10 (3%) 357 0.121
(0.383) 		0.322
(0.646) 		0.767
(1.00) 		0.953
(1.00) 		0.683
(0.977) 		0.508
(0.834) 		0.958
(1.00) 		0.495
(0.82)
MDH1 8 (2%) 359 1
(1.00) 		0.454
(0.787) 		0.134
(0.405) 		0.914
(1.00) 		0.453
(0.786) 		0.068
(0.281) 		0.547
(0.863) 		0.666
(0.964) 		0.463
(0.793) 		0.886
(1.00)
HERC5 18 (5%) 349 0.897
(1.00) 		0.855
(1.00) 		0.293
(0.615) 		0.769
(1.00) 		0.52
(0.842) 		0.767
(1.00) 		0.39
(0.721) 		0.844
(1.00) 		0.465
(0.795) 		0.899
(1.00)
AKR1C4 9 (2%) 358 0.795
(1.00) 		0.797
(1.00) 		0.768
(1.00) 		0.193
(0.49) 		0.487
(0.814) 		0.354
(0.682) 		0.781
(1.00) 		0.534
(0.855) 		0.8
(1.00) 		0.907
(1.00)
ZHX1 9 (2%) 358 0.184
(0.478) 		0.485
(0.813) 		0.814
(1.00) 		0.791
(1.00) 		0.68
(0.976) 		0.612
(0.919) 		0.986
(1.00) 		0.477
(0.805) 		0.33
(0.654) 		0.127
(0.393)
OR5B2 12 (3%) 355 0.496
(0.821) 		0.518
(0.84) 		0.142
(0.417) 		0.674
(0.971) 		0.914
(1.00) 		0.435
(0.77) 		0.667
(0.965) 		0.21
(0.511) 		0.956
(1.00) 		0.492
(0.817)
IFNAR1 7 (2%) 360 0.329
(0.654) 		0.811
(1.00) 		1
(1.00) 		0.644
(0.946) 		0.137
(0.409) 		0.84
(1.00) 		0.522
(0.844) 		0.612
(0.919) 		0.256
(0.574) 		0.169
(0.454)
CYP4A22 13 (4%) 354 0.437
(0.773) 		0.863
(1.00) 		0.143
(0.419) 		0.334
(0.659) 		0.398
(0.729) 		0.23
(0.536) 		0.299
(0.622) 		0.455
(0.788) 		0.897
(1.00) 		0.0702
(0.286)
MRPL13 6 (2%) 361 0.596
(0.907) 		0.444
(0.781) 		0.456
(0.788) 		0.298
(0.62) 		0.809
(1.00) 		0.153
(0.436) 		0.595
(0.906) 		0.804
(1.00)
IL13RA2 14 (4%) 353 1
(1.00) 		0.87
(1.00) 		0.11
(0.364) 		0.506
(0.832) 		0.354
(0.682) 		0.129
(0.397) 		0.0685
(0.282) 		0.554
(0.871)
C17ORF47 5 (1%) 362 0.82
(1.00) 		0.392
(0.723) 		1
(1.00) 		0.773
(1.00) 		0.928
(1.00) 		0.646
(0.947) 		0.13
(0.397) 		0.197
(0.495)
KCTD16 12 (3%) 355 0.703
(0.993) 		0.776
(1.00) 		0.154
(0.438) 		0.0742
(0.295) 		0.517
(0.839) 		0.26
(0.579) 		0.725
(1.00) 		0.919
(1.00) 		0.549
(0.867) 		0.679
(0.976)
FRS3 10 (3%) 357 0.635
(0.938) 		0.324
(0.647) 		0.697
(0.988) 		0.466
(0.796) 		0.324
(0.647) 		0.0772
(0.301) 		0.776
(1.00) 		0.69
(0.982) 		0.378
(0.708) 		0.224
(0.527)
CATSPER1 16 (4%) 351 0.0659
(0.278) 		0.32
(0.646) 		0.643
(0.944) 		0.239
(0.55) 		0.345
(0.671) 		0.95
(1.00) 		0.0506
(0.241) 		0.274
(0.596) 		0.99
(1.00) 		0.292
(0.614) 		1
(1.00) 		0.491
(0.816)
OTX2 6 (2%) 361 0.133
(0.404) 		0.132
(0.402) 		1
(1.00) 		0.73
(1.00) 		0.0521
(0.245) 		0.304
(0.628) 		0.151
(0.433) 		0.0887
(0.323)
CYP1B1 11 (3%) 356 0.283
(0.608) 		1
(1.00) 		0.43
(0.765) 		0.903
(1.00) 		0.512
(0.837) 		0.969
(1.00) 		0.134
(0.405) 		0.316
(0.641) 		0.201
(0.5) 		0.674
(0.971) 		0.879
(1.00) 		0.43
(0.765)
AFM 13 (4%) 354 0.0965
(0.338) 		0.196
(0.495) 		0.23
(0.536) 		0.252
(0.568) 		0.225
(0.529) 		0.752
(1.00) 		0.981
(1.00) 		0.084
(0.315) 		0.0529
(0.246) 		0.0969
(0.339) 		0.128
(0.395) 		0.487
(0.814)
SLC22A9 9 (2%) 358 0.0876
(0.32) 		0.0701
(0.286) 		0.287
(0.608) 		0.363
(0.693) 		0.0978
(0.34) 		0.3
(0.623) 		0.345
(0.671) 		0.513
(0.837) 		0.667
(0.965) 		0.26
(0.579)
C14ORF39 13 (4%) 354 0.116
(0.375) 		0.222
(0.524) 		0.541
(0.858) 		0.753
(1.00) 		0.316
(0.642) 		0.315
(0.641) 		0.757
(1.00) 		0.357
(0.685)
EFHC1 11 (3%) 356 1
(1.00) 		0.465
(0.795) 		0.517
(0.839) 		0.299
(0.621) 		0.701
(0.991) 		0.988
(1.00) 		0.538
(0.857) 		0.668
(0.965) 		0.539
(0.858) 		0.208
(0.509) 		0.954
(1.00) 		0.312
(0.637)
FAM163B 4 (1%) 363 0.462
(0.792) 		1
(1.00) 		0.615
(0.921) 		0.53
(0.852) 		1
(1.00) 		0.741
(1.00) 		0.19
(0.485) 		0.601
(0.91)
TXNDC6 8 (2%) 359 0.785
(1.00) 		0.508
(0.834) 		0.894
(1.00) 		0.648
(0.949) 		0.621
(0.927) 		0.525
(0.847) 		0.513
(0.837) 		0.183
(0.478)
SLC27A2 6 (2%) 361 0.135
(0.406) 		0.0731
(0.293) 		0.457
(0.789) 		0.316
(0.642) 		0.941
(1.00) 		1
(1.00) 		0.927
(1.00) 		1
(1.00)
ENSA 5 (1%) 362 0.818
(1.00) 		0.86
(1.00) 		1
(1.00) 		0.505
(0.831) 		0.293
(0.615) 		0.0696
(0.285) 		0.252
(0.568) 		0.485
(0.813) 		0.126
(0.391) 		0.491
(0.816)
UIMC1 6 (2%) 361 0.488
(0.814) 		0.446
(0.782) 		0.0847
(0.316) 		0.606
(0.915) 		0.119
(0.381) 		0.0878
(0.321) 		0.451
(0.786) 		0.123
(0.385)
PLEKHB2 6 (2%) 361 1
(1.00) 		0.744
(1.00) 		0.788
(1.00) 		0.648
(0.949) 		0.353
(0.681) 		0.0782
(0.303) 		0.474
(0.802) 		0.21
(0.51)
TMTC4 13 (4%) 354 1
(1.00) 		0.157
(0.439) 		0.611
(0.918) 		0.213
(0.514) 		0.628
(0.933) 		0.491
(0.816) 		0.32
(0.646) 		0.233
(0.541) 		0.24
(0.553) 		0.349
(0.676) 		0.345
(0.672) 		0.25
(0.566)
OR2V2 6 (2%) 361 0.723
(1.00) 		0.676
(0.974) 		0.768
(1.00) 		0.753
(1.00) 		0.531
(0.852) 		0.168
(0.452) 		0.224
(0.527) 		0.192
(0.49) 		0.716
(1.00) 		0.426
(0.761)
FAM98B 4 (1%) 363 0.467
(0.796) 		1
(1.00) 		0.39
(0.721) 		0.333
(0.658) 		0.538
(0.857) 		0.799
(1.00)
STX16 7 (2%) 360 0.58
(0.891) 		0.154
(0.438) 		0.651
(0.951) 		0.0706
(0.287) 		0.285
(0.608) 		0.753
(1.00) 		0.283
(0.608) 		0.309
(0.634) 		0.942
(1.00) 		0.396
(0.728)
CDH22 16 (4%) 351 0.0746
(0.296) 		0.855
(1.00) 		0.474
(0.802) 		0.137
(0.409) 		0.129
(0.396) 		0.214
(0.515) 		0.671
(0.968) 		0.0593
(0.26) 		0.703
(0.993) 		0.363
(0.692) 		1
(1.00) 		0.313
(0.638)
ZBTB24 8 (2%) 359 0.17
(0.455) 		0.516
(0.838) 		0.597
(0.907) 		0.88
(1.00) 		0.555
(0.871) 		0.261
(0.58) 		0.699
(0.99) 		0.106
(0.356) 		0.0741
(0.295) 		0.801
(1.00)
GDE1 5 (1%) 362 0.818
(1.00) 		0.743
(1.00) 		0.126
(0.39) 		0.573
(0.887) 		0.158
(0.439) 		0.175
(0.464) 		0.623
(0.929) 		0.788
(1.00)
ENPP1 14 (4%) 353 1
(1.00) 		1
(1.00) 		0.54
(0.858) 		0.802
(1.00) 		0.342
(0.667) 		0.411
(0.744) 		0.275
(0.599) 		0.383
(0.715) 		0.436
(0.771) 		0.665
(0.963) 		0.126
(0.391) 		0.884
(1.00)
CHM 4 (1%) 363 0.338
(0.664) 		0.687
(0.98) 		0.343
(0.67) 		0.775
(1.00) 		0.142
(0.417) 		0.267
(0.588) 		0.479
(0.807) 		0.63
(0.934) 		0.579
(0.891) 		0.924
(1.00)
THAP9 12 (3%) 355 0.323
(0.647) 		0.0869
(0.32) 		0.164
(0.446) 		0.382
(0.713) 		0.921
(1.00) 		0.173
(0.46) 		0.129
(0.396) 		0.0534
(0.247) 		0.105
(0.355) 		0.188
(0.484)
C1QL3 4 (1%) 363 0.775
(1.00) 		0.555
(0.871) 		0.46
(0.792) 		0.71
(0.999) 		0.427
(0.762) 		0.303
(0.625) 		0.292
(0.614) 		0.353
(0.682)
CD3D 4 (1%) 363 0.34
(0.666) 		1
(1.00) 		0.682
(0.977) 		0.807
(1.00) 		1
(1.00) 		0.334
(0.659) 		0.671
(0.968) 		0.768
(1.00)
ADORA3 14 (4%) 353 0.536
(0.856) 		1
(1.00) 		0.395
(0.726) 		0.801
(1.00) 		0.3
(0.622) 		0.114
(0.371) 		0.155
(0.438) 		0.271
(0.594) 		0.6
(0.909) 		0.344
(0.67) 		0.213
(0.514) 		0.465
(0.795)
AWAT1 8 (2%) 359 0.284
(0.608) 		0.449
(0.786) 		0.514
(0.837) 		0.863
(1.00) 		0.265
(0.585) 		0.879
(1.00) 		0.894
(1.00) 		0.181
(0.474) 		0.564
(0.878) 		0.212
(0.513)
EXT1 18 (5%) 349 0.271
(0.594) 		0.158
(0.439) 		0.12
(0.382) 		0.914
(1.00) 		0.835
(1.00) 		0.461
(0.792) 		0.724
(1.00) 		0.228
(0.534) 		0.0598
(0.262) 		0.0578
(0.256) 		0.477
(0.805) 		0.608
(0.917)
CASC1 12 (3%) 355 0.252
(0.568) 		0.58
(0.891) 		0.222
(0.525) 		0.903
(1.00) 		0.571
(0.885) 		0.0784
(0.304) 		0.604
(0.913) 		0.325
(0.649) 		0.778
(1.00) 		0.666
(0.964)
ACOT9 4 (1%) 363 1
(1.00) 		1
(1.00) 		0.185
(0.479) 		0.258
(0.576) 		0.769
(1.00) 		0.201
(0.5) 		0.157
(0.439) 		0.842
(1.00)
OR8A1 4 (1%) 363 0.337
(0.663) 		0.687
(0.98) 		0.296
(0.617) 		0.943
(1.00) 		0.195
(0.494) 		0.264
(0.584) 		0.0718
(0.289) 		0.452
(0.786)
SLC35A5 7 (2%) 360 1
(1.00) 		0.262
(0.581) 		0.284
(0.608) 		0.523
(0.845) 		0.64
(0.943) 		0.292
(0.614) 		0.528
(0.85) 		0.795
(1.00)
LEF1 9 (2%) 358 0.407
(0.739) 		0.0515
(0.243) 		0.0857
(0.318) 		0.459
(0.791) 		0.703
(0.993) 		0.509
(0.835) 		0.095
(0.336) 		0.157
(0.439) 		0.825
(1.00) 		0.879
(1.00)
UGT1A7 8 (2%) 359 0.0855
(0.317) 		0.682
(0.977) 		0.277
(0.601) 		0.388
(0.718) 		0.703
(0.993) 		0.241
(0.554) 		1
(1.00) 		0.188
(0.483)
ZNF658 10 (3%) 357 0.406
(0.738) 		0.321
(0.646) 		0.898
(1.00) 		0.876
(1.00) 		0.766
(1.00) 		0.965
(1.00) 		0.943
(1.00) 		0.396
(0.728) 		0.573
(0.887) 		0.565
(0.879)
MRPS18B 4 (1%) 363 1
(1.00) 		0.776
(1.00) 		0.769
(1.00) 		0.201
(0.5) 		0.537
(0.857) 		0.322
(0.646)
PAAF1 5 (1%) 362 0.817
(1.00) 		0.535
(0.856) 		0.539
(0.858) 		0.56
(0.875) 		0.0613
(0.266) 		0.151
(0.433) 		0.904
(1.00) 		0.173
(0.461)
UAP1L1 7 (2%) 360 0.647
(0.948) 		0.134
(0.405) 		1
(1.00) 		0.532
(0.853) 		0.369
(0.698) 		0.332
(0.657) 		0.714
(1.00) 		0.177
(0.466) 		1
(1.00) 		0.885
(1.00)
THOC6 8 (2%) 359 0.336
(0.661) 		0.681
(0.977) 		0.895
(1.00) 		0.263
(0.583) 		0.557
(0.872) 		0.561
(0.876) 		0.386
(0.717) 		0.0977
(0.34)
SLC41A2 8 (2%) 359 0.513
(0.837) 		0.264
(0.584) 		0.109
(0.363) 		0.5
(0.825) 		0.38
(0.711) 		0.134
(0.405) 		0.162
(0.444) 		0.109
(0.363)
EAPP 4 (1%) 363 0.773
(1.00) 		0.777
(1.00) 		0.792
(1.00) 		0.686
(0.979) 		0.145
(0.423) 		0.222
(0.524) 		0.158
(0.439) 		0.365
(0.694)
LBP 7 (2%) 360 1
(1.00) 		0.776
(1.00) 		0.0845
(0.315) 		0.705
(0.995) 		0.154
(0.438) 		0.214
(0.515) 		0.144
(0.422) 		0.461
(0.792)
OR51A4 8 (2%) 359 0.285
(0.608) 		0.155
(0.439) 		0.171
(0.456) 		0.0821
(0.311) 		0.386
(0.717) 		0.948
(1.00) 		0.206
(0.506) 		0.295
(0.616) 		0.293
(0.615) 		0.2
(0.499)
MAOA 5 (1%) 362 0.816
(1.00) 		0.403
(0.735) 		0.138
(0.411) 		0.704
(0.994) 		0.77
(1.00) 		0.107
(0.359) 		0.872
(1.00) 		0.666
(0.963)
OR6C75 7 (2%) 360 0.383
(0.715) 		0.164
(0.445) 		0.0529
(0.246) 		0.689
(0.981) 		0.77
(1.00) 		0.077
(0.3) 		0.694
(0.986) 		0.693
(0.985)
NAP1L1 7 (2%) 360 0.384
(0.715) 		1
(1.00) 		0.294
(0.616) 		0.945
(1.00) 		0.642
(0.944) 		0.0631
(0.27) 		0.598
(0.909) 		0.917
(1.00)
HRSP12 6 (2%) 361 0.218
(0.52) 		0.461
(0.792) 		0.542
(0.859) 		0.858
(1.00) 		0.503
(0.828) 		0.812
(1.00) 		0.228
(0.533) 		0.191
(0.487)
PGAP3 7 (2%) 360 0.578
(0.891) 		0.452
(0.786) 		0.46
(0.792) 		1
(1.00) 		1
(1.00) 		0.771
(1.00) 		0.769
(1.00) 		0.117
(0.378) 		0.837
(1.00) 		0.0815
(0.31) 		0.0952
(0.336) 		0.836
(1.00)
RAE1 6 (2%) 361 0.216
(0.517) 		0.133
(0.404) 		0.389
(0.719) 		0.591
(0.902) 		0.276
(0.599) 		0.474
(0.802) 		0.31
(0.634) 		0.0874
(0.32)
PAGE2 8 (2%) 359 0.492
(0.816) 		1
(1.00) 		0.385
(0.716) 		0.861
(1.00) 		0.768
(1.00) 		0.329
(0.654) 		0.553
(0.871) 		0.792
(1.00) 		0.384
(0.715) 		0.579
(0.891) 		0.317
(0.642) 		0.147
(0.427)
AHCTF1 21 (6%) 346 0.0647
(0.274) 		0.361
(0.689) 		0.0553
(0.25) 		0.222
(0.525) 		0.153
(0.437) 		0.803
(1.00) 		0.28
(0.604) 		0.0821
(0.311) 		0.494
(0.819) 		0.174
(0.462) 		0.204
(0.504) 		0.756
(1.00)
USP16 8 (2%) 359 0.252
(0.568) 		0.809
(1.00) 		0.512
(0.837) 		1
(1.00) 		0.628
(0.932) 		0.555
(0.871) 		0.276
(0.599) 		0.447
(0.784) 		0.658
(0.956) 		0.164
(0.446)
TCEAL5 5 (1%) 362 0.819
(1.00) 		1
(1.00) 		1
(1.00) 		0.34
(0.666) 		0.0763
(0.299) 		0.129
(0.397) 		0.905
(1.00) 		0.252
(0.568) 		0.779
(1.00) 		0.174
(0.463)
MTF1 9 (2%) 358 0.0986
(0.341) 		0.808
(1.00) 		0.0859
(0.318) 		0.198
(0.496) 		0.284
(0.608) 		0.8
(1.00) 		0.0887
(0.323) 		0.612
(0.919) 		0.743
(1.00) 		0.406
(0.738)
CCDC3 4 (1%) 363 0.468
(0.796) 		0.27
(0.591) 		0.828
(1.00) 		0.816
(1.00) 		0.109
(0.363) 		0.237
(0.547) 		0.369
(0.698) 		0.632
(0.936)
H2AFJ 3 (1%) 364 0.0953
(0.336) 		0.513
(0.837) 		0.081
(0.309) 		0.136
(0.407) 		0.251
(0.566) 		0.469
(0.797)
SLC25A44 5 (1%) 362 0.818
(1.00) 		0.402
(0.734) 		0.683
(0.977) 		0.417
(0.75) 		0.604
(0.913) 		0.108
(0.362) 		0.536
(0.856) 		0.763
(1.00)
EFTUD2 14 (4%) 353 0.242
(0.555) 		0.0524
(0.245) 		0.0573
(0.255) 		0.175
(0.465) 		0.208
(0.509) 		0.69
(0.982) 		1
(1.00) 		0.0699
(0.285) 		0.668
(0.966) 		0.442
(0.779) 		0.235
(0.545) 		0.468
(0.796)
METTL9 4 (1%) 363 0.464
(0.794) 		0.107
(0.359) 		0.611
(0.918) 		0.905
(1.00) 		0.193
(0.49) 		0.266
(0.586) 		0.072
(0.29) 		0.242
(0.555)
OR10J1 13 (4%) 354 0.157
(0.439) 		0.812
(1.00) 		0.23
(0.536) 		0.913
(1.00) 		0.467
(0.796) 		0.137
(0.409) 		0.579
(0.891) 		0.105
(0.355) 		0.314
(0.638) 		0.454
(0.787) 		0.283
(0.608) 		1
(1.00)
CXXC5 6 (2%) 361 0.217
(0.518) 		0.081
(0.309) 		0.542
(0.858) 		0.455
(0.788) 		0.0941
(0.334) 		0.497
(0.823) 		0.0615
(0.266) 		0.175
(0.463)
GMNN 3 (1%) 364 1
(1.00) 		0.465
(0.795) 		0.221
(0.524) 		1
(1.00) 		0.522
(0.844) 		0.0903
(0.326) 		0.262
(0.581)
FAM155B 8 (2%) 359 0.879
(1.00) 		0.518
(0.84) 		0.876
(1.00) 		0.456
(0.788) 		0.268
(0.59) 		0.655
(0.953) 		0.967
(1.00) 		0.184
(0.478)
EML4 10 (3%) 357 0.0544
(0.249) 		0.157
(0.439) 		0.427
(0.762) 		0.897
(1.00) 		0.552
(0.869) 		0.953
(1.00) 		0.812
(1.00) 		0.192
(0.49) 		0.92
(1.00) 		0.75
(1.00)
PLA2G15 5 (1%) 362 0.322
(0.646) 		0.0707
(0.287) 		0.374
(0.704) 		0.993
(1.00) 		0.769
(1.00) 		0.227
(0.532) 		0.366
(0.695) 		0.474
(0.802) 		0.579
(0.891) 		0.836
(1.00)
GRIA4 30 (8%) 337 0.698
(0.989) 		0.611
(0.919) 		0.763
(1.00) 		0.18
(0.472) 		0.125
(0.389) 		0.675
(0.973) 		0.356
(0.684) 		0.0757
(0.298) 		0.863
(1.00) 		0.961
(1.00) 		0.248
(0.564) 		0.629
(0.933)
LUM 12 (3%) 355 1
(1.00) 		0.796
(1.00) 		0.544
(0.86) 		0.511
(0.836) 		0.501
(0.827) 		0.237
(0.548) 		0.65
(0.95) 		0.524
(0.846) 		0.197
(0.495) 		0.62
(0.927) 		0.578
(0.891) 		0.924
(1.00)
GAD2 16 (4%) 351 0.0659
(0.278) 		0.0675
(0.28) 		0.0679
(0.281) 		0.926
(1.00) 		0.286
(0.608) 		0.0913
(0.329) 		0.671
(0.968) 		0.0524
(0.245) 		0.0899
(0.326) 		0.337
(0.663) 		0.955
(1.00) 		0.698
(0.989)
C4ORF49 5 (1%) 362 0.82
(1.00) 		0.631
(0.935) 		0.539
(0.858) 		0.609
(0.918) 		0.186
(0.482) 		0.553
(0.87) 		0.707
(0.997) 		0.188
(0.484)
NUPL2 11 (3%) 356 0.159
(0.44) 		0.578
(0.891) 		0.119
(0.381) 		0.297
(0.619) 		0.513
(0.837) 		0.458
(0.791) 		0.908
(1.00) 		0.508
(0.834) 		0.692
(0.984) 		0.443
(0.78) 		0.801
(1.00) 		0.976
(1.00)
ZSWIM3 12 (3%) 355 0.408
(0.74) 		0.32
(0.646) 		0.0695
(0.284) 		0.226
(0.531) 		0.424
(0.759) 		0.872
(1.00) 		0.453
(0.786) 		0.649
(0.95) 		0.306
(0.63) 		0.094
(0.334)
LYG1 6 (2%) 361 0.134
(0.405) 		0.295
(0.617) 		0.792
(1.00) 		0.684
(0.978) 		0.292
(0.614) 		0.178
(0.468) 		0.604
(0.913) 		0.154
(0.438)
PRPF4B 15 (4%) 352 1
(1.00) 		1
(1.00) 		0.0923
(0.332) 		0.807
(1.00) 		0.326
(0.65) 		0.873
(1.00) 		0.287
(0.608) 		0.251
(0.566) 		0.0509
(0.242) 		0.433
(0.769) 		0.351
(0.679) 		0.261
(0.58)
TDRD7 15 (4%) 352 0.0532
(0.247) 		0.579
(0.891) 		0.112
(0.367) 		0.928
(1.00) 		0.304
(0.628) 		0.781
(1.00) 		0.642
(0.944) 		0.0922
(0.331) 		0.17
(0.455) 		0.51
(0.836)
HAUS6 12 (3%) 355 0.329
(0.654) 		0.0514
(0.243) 		0.166
(0.449) 		0.741
(1.00) 		0.698
(0.989) 		0.315
(0.64) 		0.741
(1.00) 		0.351
(0.679) 		0.414
(0.748) 		0.655
(0.953)
TRYX3 6 (2%) 361 0.489
(0.815) 		0.743
(1.00) 		0.828
(1.00) 		0.975
(1.00) 		0.386
(0.717) 		0.146
(0.425) 		0.573
(0.887) 		0.517
(0.839)
ACAT2 8 (2%) 359 0.168
(0.452) 		1
(1.00) 		0.197
(0.495) 		0.639
(0.941) 		0.832
(1.00) 		0.597
(0.908) 		0.117
(0.376) 		0.606
(0.915)
C16ORF45 5 (1%) 362 1
(1.00) 		0.2
(0.498) 		0.829
(1.00) 		0.583
(0.893) 		1
(1.00) 		0.815
(1.00) 		0.367
(0.697) 		0.806
(1.00)
APBB1IP 18 (5%) 349 0.181
(0.474) 		0.0521
(0.245) 		0.118
(0.38) 		0.209
(0.51) 		0.259
(0.578) 		0.868
(1.00) 		0.512
(0.837) 		0.191
(0.488) 		0.329
(0.654) 		0.175
(0.465) 		0.837
(1.00) 		0.317
(0.642)
HSD17B11 4 (1%) 363 1
(1.00) 		0.843
(1.00) 		0.0538
(0.248) 		0.974
(1.00) 		0.425
(0.76) 		0.299
(0.621) 		0.291
(0.613) 		0.202
(0.501)
WDR5 6 (2%) 361 0.491
(0.816) 		0.196
(0.495) 		1
(1.00) 		0.591
(0.903) 		0.528
(0.85) 		0.147
(0.426) 		0.45
(0.786) 		0.445
(0.782)
RRM2B 5 (1%) 362 0.249
(0.565) 		0.744
(1.00) 		0.305
(0.629) 		0.489
(0.815) 		0.928
(1.00) 		0.554
(0.871) 		0.238
(0.549) 		0.892
(1.00)
IKBKB 7 (2%) 360 0.878
(1.00) 		1
(1.00) 		0.384
(0.716) 		0.138
(0.409) 		0.874
(1.00) 		0.775
(1.00) 		0.132
(0.402) 		0.915
(1.00)
WDR75 8 (2%) 359 0.159
(0.439) 		0.0509
(0.242) 		0.06
(0.262) 		0.11
(0.364) 		0.336
(0.662) 		0.657
(0.955) 		0.25
(0.566) 		0.0784
(0.304) 		0.948
(1.00) 		0.456
(0.788)
NOL9 7 (2%) 360 0.649
(0.95) 		0.0808
(0.309) 		0.264
(0.584) 		0.91
(1.00) 		0.308
(0.632) 		0.179
(0.471) 		0.265
(0.585) 		0.156
(0.439)
CTSZ 6 (2%) 361 0.725
(1.00) 		0.157
(0.439) 		0.767
(1.00) 		0.809
(1.00) 		0.893
(1.00) 		0.629
(0.933) 		0.399
(0.73) 		0.854
(1.00)
TPK1 5 (1%) 362 0.665
(0.963) 		0.382
(0.713) 		0.615
(0.921) 		0.973
(1.00) 		0.158
(0.439) 		0.176
(0.466) 		0.284
(0.608) 		0.402
(0.733)
C7ORF66 7 (2%) 360 0.126
(0.391) 		0.68
(0.976) 		0.455
(0.787) 		0.46
(0.792) 		0.133
(0.403) 		0.475
(0.804) 		0.333
(0.657) 		0.673
(0.971) 		0.956
(1.00) 		0.587
(0.899)
P2RX7 12 (3%) 355 0.499
(0.824) 		0.0739
(0.295) 		1
(1.00) 		0.161
(0.442) 		0.204
(0.504) 		0.121
(0.383) 		0.196
(0.494) 		0.654
(0.952)
SSX2IP 8 (2%) 359 0.784
(1.00) 		0.272
(0.594) 		0.705
(0.995) 		0.781
(1.00) 		0.769
(1.00) 		0.192
(0.488) 		0.416
(0.75) 		0.332
(0.657)
DUSP19 9 (2%) 358 0.704
(0.994) 		0.902
(1.00) 		0.699
(0.99) 		0.313
(0.638) 		0.266
(0.586) 		0.541
(0.858) 		0.0571
(0.255) 		0.866
(1.00)
LEO1 10 (3%) 357 0.12
(0.381) 		0.325
(0.649) 		0.701
(0.992) 		0.896
(1.00) 		0.0744
(0.296) 		0.289
(0.611) 		0.12
(0.381) 		0.624
(0.93) 		0.58
(0.891) 		0.837
(1.00)
ODAM 5 (1%) 362 0.667
(0.965) 		1
(1.00) 		1
(1.00) 		0.865
(1.00) 		0.422
(0.756) 		0.0655
(0.276) 		0.879
(1.00) 		0.744
(1.00)
KCNG4 10 (3%) 357 0.661
(0.959) 		0.227
(0.532) 		0.178
(0.469) 		0.112
(0.367) 		0.772
(1.00) 		0.448
(0.784) 		0.484
(0.811) 		0.572
(0.886) 		0.568
(0.882) 		0.947
(1.00)
ZNF585B 7 (2%) 360 0.382
(0.714) 		0.626
(0.932) 		0.0965
(0.338) 		0.15
(0.431) 		0.557
(0.872) 		0.641
(0.943) 		0.481
(0.809) 		0.486
(0.814)
KRTAP10-11 5 (1%) 362 0.818
(1.00) 		0.688
(0.981) 		0.139
(0.412) 		0.601
(0.91) 		0.927
(1.00) 		0.556
(0.871) 		0.808
(1.00) 		0.0858
(0.318)
SERPINB7 8 (2%) 359 0.333
(0.658) 		0.0784
(0.304) 		0.116
(0.375) 		0.409
(0.742) 		0.556
(0.871) 		0.472
(0.801) 		0.333
(0.658) 		0.742
(1.00) 		0.944
(1.00) 		0.543
(0.86)
NFKBIB 5 (1%) 362 0.532
(0.854) 		0.839
(1.00) 		0.295
(0.617) 		0.944
(1.00) 		0.772
(1.00) 		0.647
(0.948) 		0.787
(1.00) 		0.489
(0.815) 		0.459
(0.791) 		0.837
(1.00)
AK3L1 3 (1%) 364 0.159
(0.44) 		0.292
(0.614) 		0.0531
(0.247) 		0.662
(0.96) 		0.0801
(0.308) 		0.137
(0.409) 		0.253
(0.568) 		0.77
(1.00)
IFITM3 6 (2%) 361 0.725
(1.00) 		0.6
(0.909) 		0.2
(0.499) 		0.0705
(0.287) 		0.12
(0.381) 		0.071
(0.288) 		0.0732
(0.293) 		0.89
(1.00)
LMOD1 12 (3%) 355 0.201
(0.5) 		1
(1.00) 		0.245
(0.56) 		0.957
(1.00) 		0.556
(0.871) 		0.706
(0.996) 		0.259
(0.577) 		0.761
(1.00)
AP1G1 11 (3%) 356 0.287
(0.608) 		0.154
(0.438) 		0.337
(0.663) 		0.323
(0.647) 		0.135
(0.407) 		0.689
(0.982) 		0.725
(1.00) 		0.263
(0.583) 		0.711
(1) 		0.768
(1.00)
STX7 4 (1%) 363 0.285
(0.608) 		0.157
(0.439) 		0.16
(0.441) 		0.0545
(0.249) 		0.715
(1.00) 		0.328
(0.653) 		0.107
(0.36) 		0.871
(1.00) 		0.695
(0.987)
CREG2 5 (1%) 362 0.429
(0.763) 		0.0653
(0.276) 		0.341
(0.667) 		0.12
(0.382) 		0.317
(0.642) 		0.478
(0.805) 		0.302
(0.625) 		0.655
(0.953)
MSH4 12 (3%) 355 0.188
(0.484) 		0.609
(0.918) 		0.54
(0.858) 		0.268
(0.589) 		0.91
(1.00) 		0.966
(1.00) 		0.423
(0.757) 		0.733
(1.00) 		0.393
(0.723) 		0.293
(0.615)
PANK3 6 (2%) 361 0.284
(0.608) 		0.452
(0.786) 		0.667
(0.965) 		0.295
(0.617) 		0.442
(0.779) 		0.351
(0.679) 		0.942
(1.00) 		0.119
(0.38) 		0.529
(0.851) 		0.177
(0.466)
TMCO6 7 (2%) 360 0.284
(0.608) 		0.452
(0.786) 		0.124
(0.387) 		0.332
(0.657) 		0.537
(0.857) 		0.86
(1.00) 		0.834
(1.00) 		0.384
(0.715) 		0.865
(1.00) 		0.0514
(0.243)
RAB38 5 (1%) 362 0.325
(0.649) 		0.556
(0.871) 		0.459
(0.791) 		0.0823
(0.311) 		0.535
(0.856) 		0.226
(0.531) 		0.252
(0.568) 		0.521
(0.843)
DCBLD1 5 (1%) 362 0.821
(1.00) 		0.841
(1.00) 		0.683
(0.977) 		0.955
(1.00) 		0.537
(0.857) 		0.262
(0.582) 		0.708
(0.998) 		0.872
(1.00)
CD34 6 (2%) 361 0.597
(0.907) 		0.196
(0.495) 		0.297
(0.618) 		0.976
(1.00) 		0.532
(0.854) 		0.183
(0.476) 		0.194
(0.492) 		0.937
(1.00)
CASP4 8 (2%) 359 0.512
(0.837) 		0.397
(0.729) 		0.793
(1.00) 		0.913
(1.00) 		0.194
(0.491) 		0.428
(0.763) 		0.142
(0.417) 		0.772
(1.00)
ORC4L 6 (2%) 361 0.185
(0.48) 		0.454
(0.787) 		0.136
(0.409) 		0.512
(0.837) 		0.765
(1.00) 		0.931
(1.00) 		0.416
(0.75) 		0.0582
(0.257) 		0.581
(0.891) 		0.09
(0.326)
SECISBP2 7 (2%) 360 0.648
(0.949) 		0.861
(1.00) 		0.285
(0.608) 		0.661
(0.959) 		0.954
(1.00) 		0.653
(0.952) 		0.349
(0.676) 		0.7
(0.99)
RNF38 5 (1%) 362 0.251
(0.566) 		0.516
(0.838) 		1
(1.00) 		0.556
(0.871) 		0.37
(0.699) 		0.245
(0.559) 		0.39
(0.72) 		0.246
(0.561)
FGD4 5 (1%) 362 0.816
(1.00) 		0.84
(1.00) 		0.296
(0.617) 		0.614
(0.92) 		0.929
(1.00) 		0.872
(1.00) 		0.878
(1.00) 		0.972
(1.00)
OR4A16 14 (4%) 353 0.582
(0.893) 		1
(1.00) 		0.398
(0.73) 		0.222
(0.525) 		0.344
(0.67) 		0.956
(1.00) 		0.438
(0.775) 		0.599
(0.909) 		0.617
(0.923) 		0.755
(1.00) 		0.809
(1.00) 		0.312
(0.638)
TM7SF4 7 (2%) 360 0.081
(0.309) 		0.876
(1.00) 		0.792
(1.00) 		0.993
(1.00) 		0.954
(1.00) 		0.737
(1.00) 		0.358
(0.686) 		0.356
(0.685)
SPOPL 10 (3%) 357 0.595
(0.906) 		0.822
(1.00) 		0.19
(0.485) 		0.526
(0.848) 		0.773
(1.00) 		0.277
(0.601) 		0.828
(1.00) 		0.736
(1.00)
DBF4B 7 (2%) 360 0.287
(0.608) 		1
(1.00) 		0.0799
(0.307) 		0.684
(0.978) 		0.767
(1.00) 		0.972
(1.00) 		0.835
(1.00) 		0.919
(1.00) 		0.94
(1.00) 		0.466
(0.796)
AKAP7 5 (1%) 362 0.821
(1.00) 		1
(1.00) 		0.227
(0.532) 		0.343
(0.669) 		1
(1.00) 		0.817
(1.00) 		0.238
(0.549) 		0.516
(0.838)
RNF215 3 (1%) 364 0.722
(1.00) 		0.515
(0.838) 		0.342
(0.668) 		0.758
(1.00) 		0.144
(0.42) 		0.136
(0.408) 		0.251
(0.566) 		0.377
(0.708)
OR5AK2 9 (2%) 358 0.287
(0.608) 		0.451
(0.786) 		0.637
(0.94) 		0.596
(0.907) 		0.278
(0.603) 		0.86
(1.00) 		0.801
(1.00) 		0.157
(0.439) 		0.537
(0.857) 		0.083
(0.313) 		0.713
(1.00) 		0.609
(0.917)
RARG 10 (3%) 357 0.123
(0.385) 		0.321
(0.646) 		0.136
(0.409) 		0.332
(0.657) 		0.17
(0.455) 		0.737
(1.00) 		0.287
(0.608) 		0.265
(0.585) 		0.24
(0.553) 		0.715
(1.00)
LCN9 4 (1%) 363 0.464
(0.794) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.418
(0.752) 		0.914
(1.00)
STAT3 9 (2%) 358 0.71
(0.999) 		0.903
(1.00) 		0.903
(1.00) 		0.322
(0.646) 		0.155
(0.438) 		0.5
(0.825) 		0.0607
(0.264) 		0.645
(0.947) 		0.648
(0.949) 		0.24
(0.553)
IRF6 6 (2%) 361 0.216
(0.518) 		0.46
(0.792) 		0.662
(0.96) 		0.477
(0.805) 		0.416
(0.75) 		0.232
(0.54) 		0.853
(1.00) 		0.708
(0.998)
SPAG7 3 (1%) 364 0.484
(0.812) 		0.776
(1.00) 		0.465
(0.795) 		0.0508
(0.242) 		0.144
(0.422) 		0.484
(0.811) 		0.182
(0.475) 		0.292
(0.614)
SYNGR4 6 (2%) 361 0.488
(0.814) 		0.46
(0.792) 		0.286
(0.608) 		0.824
(1.00) 		0.323
(0.647) 		0.353
(0.681) 		0.69
(0.982) 		0.618
(0.924)
KLF3 7 (2%) 360 0.386
(0.717) 		0.082
(0.311) 		0.303
(0.625) 		0.129
(0.396) 		0.0671
(0.28) 		0.232
(0.54) 		0.607
(0.916) 		0.149
(0.43)
OR7D4 9 (2%) 358 0.634
(0.937) 		0.821
(1.00) 		0.248
(0.563) 		0.161
(0.442) 		0.681
(0.977) 		0.0508
(0.242) 		0.276
(0.599) 		0.713
(1.00) 		0.104
(0.352) 		0.681
(0.977)
MFSD6 7 (2%) 360 0.332
(0.657) 		0.595
(0.907) 		0.283
(0.608) 		0.387
(0.718) 		0.644
(0.945) 		0.156
(0.439) 		0.208
(0.509) 		0.409
(0.742) 		0.681
(0.977) 		0.61
(0.918)
ABCB6 7 (2%) 360 0.284
(0.608) 		0.455
(0.788) 		0.0995
(0.343) 		0.0717
(0.289) 		0.0521
(0.245) 		0.824
(1.00) 		0.954
(1.00) 		0.538
(0.857) 		0.334
(0.659) 		0.655
(0.953)
C10ORF119 9 (2%) 358 0.285
(0.608) 		0.294
(0.616) 		0.445
(0.782) 		0.917
(1.00) 		0.854
(1.00) 		0.507
(0.833) 		0.939
(1.00) 		0.408
(0.74)
CLTCL1 18 (5%) 349 0.605
(0.914) 		1
(1.00) 		0.421
(0.755) 		0.934
(1.00) 		0.939
(1.00) 		0.873
(1.00) 		0.949
(1.00) 		0.629
(0.933) 		0.533
(0.855) 		0.213
(0.514)
GFRA4 3 (1%) 364 0.161
(0.442) 		0.791
(1.00) 		0.237
(0.547) 		0.54
(0.858) 		0.566
(0.88) 		0.715
(1.00) 		0.209
(0.51)
CYP3A7 10 (3%) 357 0.515
(0.838) 		0.208
(0.509) 		0.0553
(0.25) 		1
(1.00) 		1
(1.00) 		0.123
(0.386) 		0.944
(1.00) 		0.399
(0.731) 		0.101
(0.346) 		0.604
(0.913)
PDGFC 9 (2%) 358 0.171
(0.457) 		0.217
(0.519) 		0.342
(0.668) 		0.775
(1.00) 		0.627
(0.932) 		0.542
(0.859) 		0.695
(0.987) 		0.597
(0.907) 		0.498
(0.823) 		0.859
(1.00)
STAG2 13 (4%) 354 0.0751
(0.297) 		0.857
(1.00) 		0.476
(0.805) 		0.0525
(0.245) 		0.425
(0.759) 		0.319
(0.646) 		0.224
(0.527) 		0.69
(0.982) 		0.776
(1.00) 		0.476
(0.804)
LPAR6 7 (2%) 360 0.459
(0.791) 		0.516
(0.838) 		0.138
(0.41) 		0.703
(0.994) 		0.715
(1.00) 		0.168
(0.452) 		0.145
(0.422) 		0.963
(1.00)
A1CF 8 (2%) 359 0.0541
(0.248) 		0.155
(0.439) 		0.885
(1.00) 		0.773
(1.00) 		0.204
(0.504) 		0.71
(0.999) 		0.586
(0.897) 		0.0821
(0.311) 		0.889
(1.00) 		0.88
(1.00)
CD47 8 (2%) 359 0.17
(0.455) 		0.741
(1.00) 		0.553
(0.871) 		0.73
(1.00) 		1
(1.00) 		0.354
(0.682) 		0.34
(0.666) 		0.0592
(0.26)
KIAA1407 11 (3%) 356 0.0973
(0.34) 		0.198
(0.495) 		0.901
(1.00) 		0.794
(1.00) 		0.158
(0.439) 		0.816
(1.00) 		0.887
(1.00) 		0.0865
(0.319) 		0.472
(0.801) 		0.0513
(0.243) 		0.648
(0.95) 		0.995
(1.00)
TGIF1 9 (2%) 358 0.184
(0.478) 		0.29
(0.611) 		0.251
(0.566) 		0.253
(0.568) 		0.63
(0.934) 		0.511
(0.836) 		0.885
(1.00) 		0.813
(1.00)
IGFBP3 6 (2%) 361 0.134
(0.405) 		1
(1.00) 		0.455
(0.788) 		0.868
(1.00) 		0.809
(1.00) 		0.781
(1.00) 		0.608
(0.917) 		0.9
(1.00)
ZNF41 9 (2%) 358 0.79
(1.00) 		0.332
(0.657) 		0.499
(0.824) 		0.875
(1.00) 		0.386
(0.717) 		0.554
(0.871) 		0.356
(0.684) 		0.294
(0.616) 		0.292
(0.614) 		0.586
(0.896)
OR13C5 11 (3%) 356 0.175
(0.464) 		0.177
(0.466) 		0.0557
(0.251) 		0.55
(0.867) 		0.95
(1.00) 		0.626
(0.932) 		0.73
(1.00) 		0.485
(0.813) 		0.508
(0.834) 		0.428
(0.763)
CYP2C9 8 (2%) 359 0.238
(0.55) 		0.11
(0.363) 		0.885
(1.00) 		0.269
(0.591) 		0.265
(0.586) 		0.484
(0.812) 		0.478
(0.805) 		0.317
(0.642) 		0.824
(1.00) 		0.662
(0.96)
ZNF235 9 (2%) 358 0.922
(1.00) 		0.61
(0.918) 		0.564
(0.877) 		0.517
(0.839) 		1
(1.00) 		0.31
(0.634) 		0.593
(0.905) 		0.642
(0.944) 		0.905
(1.00) 		0.598
(0.909)
CEPT1 5 (1%) 362 0.249
(0.565) 		0.462
(0.792) 		0.296
(0.617) 		0.964
(1.00) 		0.77
(1.00) 		0.227
(0.532) 		0.905
(1.00) 		0.406
(0.738)
GGNBP2 11 (3%) 356 0.303
(0.626) 		0.294
(0.616) 		0.51
(0.836) 		0.496
(0.821) 		0.4
(0.732) 		0.216
(0.517) 		0.248
(0.564) 		0.34
(0.666)
AP4B1 12 (3%) 355 0.0703
(0.286) 		0.559
(0.874) 		0.352
(0.68) 		0.787
(1.00) 		0.331
(0.656) 		0.377
(0.707) 		0.498
(0.823) 		0.237
(0.547)
DIAPH3 16 (4%) 351 0.36
(0.688) 		0.576
(0.89) 		0.131
(0.399) 		0.798
(1.00) 		0.189
(0.485) 		0.0641
(0.272) 		0.154
(0.438) 		0.122
(0.384) 		1
(1.00) 		0.835
(1.00)
SBDS 3 (1%) 364 0.348
(0.674) 		0.0656
(0.277) 		0.143
(0.419) 		0.116
(0.374) 		0.0597
(0.261) 		0.0893
(0.324)
ANXA11 7 (2%) 360 1
(1.00) 		0.796
(1.00) 		0.0805
(0.308) 		0.209
(0.51) 		1
(1.00) 		0.856
(1.00) 		0.111
(0.365) 		0.541
(0.858) 		0.0661
(0.278) 		0.205
(0.505)
OR2A5 10 (3%) 357 0.0547
(0.249) 		0.155
(0.438) 		0.429
(0.764) 		0.216
(0.518) 		0.153
(0.436) 		0.302
(0.624) 		0.802
(1.00) 		0.211
(0.511) 		0.43
(0.764) 		0.76
(1.00) 		0.46
(0.792) 		0.355
(0.683)
SLC45A2 9 (2%) 358 1
(1.00) 		0.333
(0.658) 		0.793
(1.00) 		0.164
(0.445) 		0.139
(0.411) 		0.494
(0.819) 		0.59
(0.902) 		0.877
(1.00) 		0.0672
(0.28) 		0.233
(0.541)
DUSP7 6 (2%) 361 0.486
(0.814) 		0.379
(0.71) 		0.0862
(0.318) 		0.969
(1.00) 		0.0526
(0.245) 		0.337
(0.663) 		0.451
(0.786) 		0.355
(0.684)
EFCAB4B 5 (1%) 362 0.247
(0.562) 		0.331
(0.656) 		0.114
(0.37) 		0.844
(1.00) 		0.187
(0.482) 		0.0576
(0.256) 		0.215
(0.517) 		0.484
(0.812)
IFI44 8 (2%) 359 0.168
(0.453) 		0.517
(0.839) 		0.11
(0.364) 		0.742
(1.00) 		0.703
(0.993) 		0.0841
(0.315) 		0.984
(1.00) 		0.569
(0.883)
DGKH 15 (4%) 352 0.0997
(0.343) 		0.195
(0.494) 		0.797
(1.00) 		0.514
(0.838) 		0.0756
(0.298) 		0.405
(0.736) 		0.865
(1.00) 		0.0943
(0.335) 		0.949
(1.00) 		0.278
(0.602) 		0.714
(1.00) 		0.835
(1.00)
SGOL2 12 (3%) 355 0.0701
(0.286) 		0.78
(1.00) 		0.156
(0.439) 		0.987
(1.00) 		0.0684
(0.282) 		0.162
(0.444) 		0.244
(0.558) 		0.23
(0.536)
STK38L 7 (2%) 360 0.098
(0.34) 		0.194
(0.492) 		0.245
(0.56) 		0.204
(0.504) 		0.557
(0.872) 		0.737
(1.00) 		0.123
(0.386) 		0.355
(0.683)
MFSD4 6 (2%) 361 0.597
(0.908) 		0.463
(0.793) 		1
(1.00) 		0.472
(0.801) 		0.895
(1.00) 		0.943
(1.00) 		0.834
(1.00) 		0.0659
(0.278)
MPP7 5 (1%) 362 0.428
(0.763) 		0.841
(1.00) 		0.172
(0.459) 		0.434
(0.769) 		0.297
(0.619) 		0.0621
(0.268) 		0.878
(1.00) 		0.745
(1.00)
IKBKE 7 (2%) 360 0.462
(0.792) 		0.135
(0.406) 		0.579
(0.891) 		0.326
(0.651) 		0.556
(0.871) 		0.541
(0.858) 		0.908
(1.00) 		0.472
(0.801) 		0.527
(0.849) 		0.613
(0.92)
PSMD11 8 (2%) 359 0.0576
(0.256) 		1
(1.00) 		0.537
(0.857) 		0.0556
(0.251) 		1
(1.00) 		0.186
(0.48) 		0.659
(0.956) 		0.211
(0.511)
OR9Q2 14 (4%) 353 0.285
(0.608) 		1
(1.00) 		0.15
(0.432) 		0.259
(0.577) 		0.392
(0.723) 		0.994
(1.00) 		0.392
(0.723) 		0.58
(0.891) 		0.503
(0.828) 		0.192
(0.489)
HIST1H2BC 4 (1%) 363 0.0644
(0.273) 		0.512
(0.837) 		0.46
(0.792) 		0.117
(0.378) 		0.652
(0.951) 		0.488
(0.814) 		0.91
(1.00) 		0.744
(1.00)
CLK4 9 (2%) 358 0.639
(0.941) 		0.512
(0.837) 		0.536
(0.856) 		0.123
(0.385) 		0.682
(0.977) 		0.0809
(0.309) 		0.741
(1.00) 		0.44
(0.776) 		0.695
(0.987) 		0.524
(0.846)
LPGAT1 3 (1%) 364 1
(1.00) 		0.403
(0.735) 		0.616
(0.922) 		0.634
(0.937) 		0.348
(0.674) 		0.481
(0.808) 		0.183
(0.477) 		0.366
(0.696)
TMEM229B 4 (1%) 363 0.466
(0.796) 		1
(1.00) 		0.429
(0.764) 		1
(1.00) 		0.873
(1.00) 		0.666
(0.963)
IFITM5 3 (1%) 364 0.717
(1.00) 		0.778
(1.00) 		0.341
(0.667) 		1
(1.00) 		0.0809
(0.309) 		0.136
(0.408) 		0.93
(1.00) 		0.134
(0.405)
FAM70A 7 (2%) 360 0.386
(0.717) 		0.592
(0.904) 		0.201
(0.5) 		0.653
(0.952) 		0.642
(0.944) 		0.0644
(0.273) 		0.473
(0.802) 		0.435
(0.77)
METT5D1 6 (2%) 361 0.134
(0.405) 		0.379
(0.71) 		0.375
(0.705) 		0.608
(0.916) 		0.807
(1.00) 		0.073
(0.292) 		0.3
(0.622) 		0.541
(0.858) 		0.3
(0.622) 		0.708
(0.998)
GFRAL 4 (1%) 363 0.094
(0.334) 		0.108
(0.362) 		0.615
(0.921) 		0.846
(1.00) 		0.389
(0.72) 		0.739
(1.00) 		0.158
(0.439) 		0.39
(0.721)
ATG10 4 (1%) 363 0.0627
(0.27) 		0.681
(0.977) 		0.807
(1.00) 		0.652
(0.951) 		0.315
(0.641) 		0.497
(0.822) 		0.147
(0.428)
MORC2 12 (3%) 355 0.579
(0.891) 		0.156
(0.439) 		0.223
(0.525) 		0.27
(0.592) 		0.503
(0.828) 		0.218
(0.521) 		0.829
(1.00) 		0.126
(0.39) 		0.223
(0.525) 		0.389
(0.719) 		0.412
(0.745) 		0.682
(0.977)
DLGAP5 8 (2%) 359 0.884
(1.00) 		0.0971
(0.339) 		0.251
(0.566) 		0.941
(1.00) 		0.658
(0.956) 		0.11
(0.364) 		0.52
(0.842) 		0.948
(1.00)
ACCN5 13 (4%) 354 0.0523
(0.245) 		1
(1.00) 		0.557
(0.872) 		0.696
(0.988) 		0.0689
(0.283) 		0.36
(0.688) 		0.662
(0.96) 		0.477
(0.805) 		0.94
(1.00) 		0.8
(1.00) 		0.378
(0.709) 		0.836
(1.00)
CCT5 8 (2%) 359 0.189
(0.484) 		0.796
(1.00) 		0.171
(0.457) 		0.625
(0.931) 		0.444
(0.781) 		0.713
(1.00) 		0.623
(0.929) 		0.26
(0.579) 		0.19
(0.486) 		0.0693
(0.283)
TBCA 4 (1%) 363 0.464
(0.795) 		0.828
(1.00) 		0.696
(0.988) 		0.242
(0.555) 		0.593
(0.905) 		0.496
(0.821) 		0.549
(0.866)
RWDD4A 5 (1%) 362 0.818
(1.00) 		0.395
(0.726) 		1
(1.00) 		0.199
(0.496) 		0.318
(0.645) 		0.67
(0.967) 		0.727
(1.00) 		0.575
(0.889) 		0.776
(1.00) 		0.884
(1.00)
SLC44A1 9 (2%) 358 0.579
(0.891) 		1
(1.00) 		0.0873
(0.32) 		0.163
(0.444) 		0.878
(1.00) 		0.181
(0.474) 		0.112
(0.366) 		0.836
(1.00) 		0.344
(0.67) 		0.798
(1.00)
LPIN2 9 (2%) 358 1
(1.00) 		0.61
(0.918) 		0.287
(0.608) 		0.216
(0.517) 		0.108
(0.362) 		0.527
(0.849) 		0.723
(1.00) 		0.865
(1.00) 		0.742
(1.00) 		0.948
(1.00)
C4ORF29 5 (1%) 362 0.0615
(0.266) 		0.108
(0.36) 		0.54
(0.858) 		0.91
(1.00) 		0.37
(0.699) 		0.146
(0.425) 		0.387
(0.718) 		0.809
(1.00)
HAUS1 6 (2%) 361 0.216
(0.518) 		0.393
(0.724) 		0.766
(1.00) 		0.147
(0.426) 		1
(1.00) 		0.0972
(0.339) 		0.624
(0.931) 		0.824
(1.00)
C14ORF105 3 (1%) 364 0.161
(0.442) 		0.54
(0.858) 		0.56
(0.875) 		0.506
(0.832) 		0.184
(0.479)
UBA3 6 (2%) 361 0.216
(0.517) 		0.198
(0.495) 		0.54
(0.858) 		0.0779
(0.303) 		0.42
(0.754) 		0.463
(0.793) 		1
(1.00) 		0.935
(1.00)
UBE3C 18 (5%) 349 0.104
(0.353) 		0.562
(0.876) 		0.173
(0.461) 		0.317
(0.642) 		0.369
(0.698) 		0.32
(0.646) 		0.904
(1.00) 		0.509
(0.835) 		0.892
(1.00) 		0.235
(0.545) 		0.0529
(0.246) 		0.725
(1.00)
TMSB15B 3 (1%) 364 1
(1.00) 		0.779
(1.00) 		0.346
(0.672) 		0.48
(0.808) 		0.162
(0.444) 		0.252
(0.568)
ZP3 6 (2%) 361 1
(1.00) 		0.331
(0.656) 		0.578
(0.891) 		0.107
(0.36) 		0.892
(1.00) 		0.441
(0.778) 		0.972
(1.00) 		0.177
(0.466)
OR11H12 3 (1%) 364 1
(1.00) 		1
(1.00) 		0.411
(0.744) 		0.274
(0.598) 		0.185
(0.48) 		0.376
(0.705)
MMAA 9 (2%) 358 0.184
(0.478) 		0.139
(0.412) 		0.224
(0.527) 		0.678
(0.975) 		0.0507
(0.242) 		0.301
(0.624) 		0.176
(0.465) 		0.317
(0.642) 		0.81
(1.00) 		0.697
(0.988)
CALCOCO2 7 (2%) 360 0.653
(0.952) 		0.629
(0.933) 		0.874
(1.00) 		0.132
(0.401) 		0.769
(1.00) 		0.642
(0.944) 		0.567
(0.881) 		0.858
(1.00)
ZNF385B 7 (2%) 360 0.0797
(0.307) 		0.12
(0.381) 		0.445
(0.782) 		0.272
(0.594) 		0.306
(0.629) 		0.526
(0.848) 		0.373
(0.702) 		0.984
(1.00)
SUPT3H 11 (3%) 356 0.097
(0.339) 		0.81
(1.00) 		0.111
(0.366) 		1
(1.00) 		0.156
(0.439) 		0.748
(1.00) 		0.907
(1.00) 		0.732
(1.00) 		0.795
(1.00) 		0.113
(0.369)
NCL 10 (3%) 357 0.429
(0.764) 		0.666
(0.963) 		0.893
(1.00) 		0.557
(0.872) 		0.853
(1.00) 		0.0908
(0.328) 		0.57
(0.885) 		0.629
(0.933) 		0.247
(0.562) 		0.534
(0.855)
ANAPC16 3 (1%) 364 1
(1.00) 		1
(1.00) 		0.925
(1.00) 		0.693
(0.986) 		0.918
(1.00)
DNAJC18 7 (2%) 360 0.65
(0.951) 		1
(1.00) 		0.201
(0.5) 		0.504
(0.83) 		0.712
(1.00) 		0.081
(0.309) 		0.475
(0.803) 		0.732
(1.00)
ESRP2 9 (2%) 358 0.285
(0.608) 		0.451
(0.786) 		0.687
(0.98) 		0.448
(0.785) 		0.731
(1.00) 		0.36
(0.688) 		0.423
(0.757) 		0.224
(0.527) 		0.75
(1.00) 		0.528
(0.85) 		0.555
(0.871) 		0.801
(1.00)
VIM 7 (2%) 360 0.134
(0.405) 		0.212
(0.513) 		0.214
(0.515) 		0.832
(1.00) 		0.688
(0.981) 		0.735
(1.00) 		0.576
(0.89) 		0.812
(1.00)
WDR45L 7 (2%) 360 0.46
(0.792) 		0.595
(0.906) 		0.455
(0.787) 		0.735
(1.00) 		0.19
(0.487) 		0.0544
(0.249) 		0.683
(0.977) 		0.297
(0.618)
PISD 3 (1%) 364 1
(1.00) 		1
(1.00) 		0.345
(0.671) 		0.482
(0.81) 		0.252
(0.568) 		0.975
(1.00)
DEFB129 5 (1%) 362 0.581
(0.891) 		0.156
(0.439) 		0.322
(0.646) 		0.126
(0.39) 		0.473
(0.802) 		0.213
(0.514) 		0.195
(0.494) 		0.747
(1.00) 		0.726
(1.00)
OR8K3 10 (3%) 357 0.222
(0.525) 		0.154
(0.438) 		0.3
(0.622) 		0.593
(0.905) 		0.578
(0.891) 		0.483
(0.811) 		0.566
(0.879) 		0.599
(0.909) 		0.249
(0.565) 		0.185
(0.48)
GRK5 11 (3%) 356 1
(1.00) 		0.577
(0.891) 		0.753
(1.00) 		0.295
(0.616) 		0.189
(0.485) 		0.964
(1.00) 		0.887
(1.00) 		0.438
(0.774) 		0.403
(0.735) 		0.563
(0.877)
GLDN 7 (2%) 360 0.0799
(0.307) 		0.162
(0.444) 		0.136
(0.409) 		0.204
(0.504) 		0.953
(1.00) 		0.334
(0.659) 		0.161
(0.442) 		0.796
(1.00)
DEK 6 (2%) 361 0.216
(0.518) 		1
(1.00) 		0.0538
(0.248) 		0.533
(0.855) 		0.81
(1.00) 		0.225
(0.528) 		0.549
(0.867) 		0.951
(1.00)
PCDH9 38 (10%) 329 0.684
(0.978) 		0.512
(0.837) 		0.214
(0.515) 		0.0553
(0.25) 		0.171
(0.457) 		0.749
(1.00) 		0.12
(0.382) 		0.408
(0.74) 		0.889
(1.00) 		0.29
(0.612) 		0.476
(0.804) 		0.991
(1.00)
DPPA2 7 (2%) 360 0.385
(0.716) 		0.678
(0.975) 		0.0627
(0.27) 		0.641
(0.943) 		0.444
(0.781) 		0.114
(0.371) 		0.208
(0.509) 		0.237
(0.547)
TYW3 6 (2%) 361 0.727
(1.00) 		0.0658
(0.278) 		0.137
(0.409) 		0.261
(0.58) 		0.121
(0.383) 		0.066
(0.278) 		0.0969
(0.339) 		0.636
(0.939) 		0.748
(1.00) 		0.923
(1.00)
KLF12 3 (1%) 364 0.0939
(0.334) 		1
(1.00) 		0.176
(0.465) 		0.815
(1.00) 		0.588
(0.899)
MGEA5 8 (2%) 359 0.0593
(0.26) 		0.445
(0.782) 		0.109
(0.362) 		0.377
(0.707) 		0.554
(0.871) 		0.652
(0.951) 		0.647
(0.948) 		0.38
(0.712)
HAUS3 9 (2%) 358 0.287
(0.608) 		0.71
(0.999) 		0.73
(1.00) 		0.536
(0.856) 		1
(1.00) 		0.834
(1.00) 		0.453
(0.786) 		0.0736
(0.294)
NUDT16L1 3 (1%) 364 0.16
(0.441) 		0.792
(1.00) 		0.686
(0.979) 		0.693
(0.985) 		0.299
(0.621) 		0.813
(1.00) 		0.819
(1.00)
C14ORF104 4 (1%) 363 0.465
(0.795) 		0.914
(1.00) 		1
(1.00) 		1
(1.00) 		0.729
(1.00)
ZSCAN20 13 (4%) 354 0.95
(1.00) 		0.811
(1.00) 		0.314
(0.638) 		0.179
(0.47) 		0.244
(0.559) 		0.435
(0.77) 		0.21
(0.51) 		0.389
(0.719) 		0.921
(1.00) 		0.38
(0.712)
GSK3B 14 (4%) 353 0.116
(0.375) 		0.321
(0.646) 		0.118
(0.378) 		0.762
(1.00) 		0.712
(1.00) 		0.89
(1.00) 		0.221
(0.523) 		0.361
(0.69) 		0.833
(1.00) 		0.305
(0.628)
NSF 4 (1%) 363 0.466
(0.796) 		0.201
(0.5) 		0.462
(0.792) 		0.513
(0.837) 		1
(1.00) 		0.121
(0.383) 		1
(1.00) 		0.798
(1.00)
TRPC1 13 (4%) 354 0.0981
(0.34) 		0.811
(1.00) 		0.0953
(0.336) 		0.763
(1.00) 		0.922
(1.00) 		0.797
(1.00) 		0.139
(0.412) 		0.633
(0.936) 		0.848
(1.00) 		0.0753
(0.298) 		0.0963
(0.338) 		0.542
(0.859)
ZNF643 9 (2%) 358 0.187
(0.483) 		1
(1.00) 		0.215
(0.517) 		1
(1.00) 		0.265
(0.586) 		0.505
(0.83) 		0.801
(1.00) 		0.133
(0.404) 		0.75
(1.00) 		0.67
(0.968)
RNF10 13 (4%) 354 0.076
(0.299) 		0.0671
(0.28) 		0.0638
(0.272) 		0.0769
(0.3) 		0.193
(0.491) 		0.834
(1.00) 		0.291
(0.613) 		0.174
(0.463) 		0.166
(0.448) 		0.313
(0.638)
NCF2 8 (2%) 359 0.337
(0.663) 		0.298
(0.62) 		0.554
(0.871) 		0.829
(1.00) 		0.452
(0.786) 		0.0673
(0.28) 		0.215
(0.516) 		0.166
(0.449)
TAF4 9 (2%) 358 0.209
(0.51) 		0.451
(0.786) 		1
(1.00) 		1
(1.00) 		0.335
(0.661) 		0.267
(0.588) 		0.907
(1.00) 		0.179
(0.469) 		0.484
(0.812) 		0.161
(0.442)
IL18R1 13 (4%) 354 0.283
(0.608) 		0.125
(0.389) 		0.163
(0.445) 		0.861
(1.00) 		0.387
(0.718) 		0.515
(0.838) 		0.242
(0.555) 		0.151
(0.433) 		0.0589
(0.259) 		0.121
(0.383)
TMEM62 6 (2%) 361 0.134
(0.405) 		0.839
(1.00) 		0.461
(0.792) 		0.616
(0.922) 		1
(1.00) 		0.815
(1.00) 		0.565
(0.879) 		0.811
(1.00)
FABP2 7 (2%) 360 0.461
(0.792) 		0.876
(1.00) 		0.386
(0.717) 		0.0809
(0.309) 		0.447
(0.783) 		0.157
(0.439) 		0.222
(0.525) 		0.117
(0.376) 		0.776
(1.00) 		0.354
(0.682)
HCFC1R1 5 (1%) 362 0.248
(0.563) 		1
(1.00) 		0.372
(0.701) 		0.628
(0.933) 		0.775
(1.00) 		0.088
(0.321) 		0.387
(0.718) 		0.325
(0.649)
VCX3A 5 (1%) 362 0.533
(0.855) 		0.326
(0.65) 		0.115
(0.374) 		0.0958
(0.337) 		1
(1.00) 		0.671
(0.969) 		0.455
(0.787) 		0.909
(1.00)
CASP5 13 (4%) 354 0.099
(0.342) 		0.0513
(0.243) 		0.31
(0.635) 		1
(1.00) 		0.211
(0.511) 		0.189
(0.485) 		1
(1.00) 		0.187
(0.483) 		0.366
(0.696) 		0.247
(0.563) 		0.717
(1.00) 		0.951
(1.00)
CXCR7 19 (5%) 348 0.386
(0.717) 		0.272
(0.594) 		0.528
(0.85) 		1
(1.00) 		0.301
(0.623) 		0.617
(0.923) 		0.461
(0.792) 		0.439
(0.775) 		0.0896
(0.325) 		0.249
(0.565) 		0.327
(0.651) 		0.772
(1.00)
DTX3L 10 (3%) 357 0.285
(0.608) 		1
(1.00) 		0.218
(0.52) 		1
(1.00) 		0.444
(0.781) 		0.649
(0.95) 		0.811
(1.00) 		0.305
(0.628) 		0.892
(1.00) 		0.21
(0.511)
ZNF295 10 (3%) 357 0.158
(0.439) 		0.517
(0.839) 		0.221
(0.523) 		1
(1.00) 		0.194
(0.492) 		0.125
(0.39) 		0.433
(0.768) 		0.696
(0.988) 		0.459
(0.791) 		0.407
(0.739)
SHQ1 8 (2%) 359 0.685
(0.979) 		0.445
(0.781) 		1
(1.00) 		0.414
(0.747) 		0.268
(0.589) 		0.705
(0.995) 		0.356
(0.685) 		0.113
(0.369)
DAB2 13 (4%) 354 0.79
(1.00) 		0.238
(0.549) 		0.0992
(0.342) 		0.176
(0.465) 		0.0833
(0.313) 		0.781
(1.00) 		0.437
(0.772) 		0.456
(0.788) 		0.394
(0.725) 		0.549
(0.866) 		0.955
(1.00) 		0.0801
(0.308)
IFLTD1 12 (3%) 355 0.781
(1.00) 		0.197
(0.495) 		0.201
(0.5) 		0.742
(1.00) 		0.713
(1.00) 		0.322
(0.646) 		0.628
(0.932) 		0.186
(0.481) 		0.0852
(0.317) 		0.489
(0.815)
GOLGA1 7 (2%) 360 0.286
(0.608) 		0.155
(0.439) 		0.124
(0.386) 		0.211
(0.511) 		0.827
(1.00) 		0.753
(1.00) 		0.217
(0.518) 		0.164
(0.446) 		0.535
(0.856) 		0.275
(0.599)
FAM167B 4 (1%) 363 0.466
(0.795) 		0.779
(1.00) 		0.549
(0.867) 		0.771
(1.00) 		0.19
(0.485) 		0.307
(0.631)
MR1 5 (1%) 362 0.249
(0.565) 		0.0707
(0.287) 		0.827
(1.00) 		0.7
(0.99) 		0.093
(0.333) 		0.341
(0.667) 		0.523
(0.845) 		0.837
(1.00)
OR5R1 14 (4%) 353 0.24
(0.553) 		0.109
(0.362) 		0.626
(0.932) 		0.923
(1.00) 		0.29
(0.612) 		0.966
(1.00) 		0.683
(0.977) 		0.879
(1.00) 		1
(1.00) 		0.941
(1.00)
GSS 8 (2%) 359 0.189
(0.485) 		0.452
(0.786) 		0.168
(0.452) 		0.462
(0.793) 		0.558
(0.873) 		0.393
(0.724) 		0.747
(1.00) 		0.669
(0.967) 		0.771
(1.00) 		0.282
(0.608)
ZNF323 10 (3%) 357 0.118
(0.379) 		0.742
(1.00) 		0.815
(1.00) 		0.879
(1.00) 		0.508
(0.834) 		0.277
(0.6) 		0.0613
(0.266) 		0.248
(0.564) 		0.777
(1.00) 		0.489
(0.815)
SLAMF9 6 (2%) 361 0.215
(0.517) 		0.397
(0.729) 		0.372
(0.701) 		0.529
(0.851) 		1
(1.00) 		0.0701
(0.286) 		0.834
(1.00) 		0.247
(0.562)
RIC8B 9 (2%) 358 0.184
(0.478) 		0.511
(0.836) 		0.555
(0.871) 		0.404
(0.736) 		0.593
(0.905) 		0.21
(0.511) 		0.905
(1.00) 		0.218
(0.52)
SPATA6 6 (2%) 361 0.492
(0.817) 		0.532
(0.854) 		1
(1.00) 		0.41
(0.743) 		0.53
(0.851) 		0.225
(0.528) 		0.45
(0.786) 		0.632
(0.936)
RALA 7 (2%) 360 0.65
(0.95) 		0.0708
(0.287) 		0.201
(0.499) 		0.621
(0.928) 		0.955
(1.00) 		0.749
(1.00) 		0.207
(0.508) 		0.776
(1.00)
IL7R 11 (3%) 356 0.755
(1.00) 		0.0669
(0.28) 		0.467
(0.796) 		0.422
(0.756) 		0.724
(1.00) 		0.689
(0.982) 		0.342
(0.668) 		0.166
(0.45)
ERN1 3 (1%) 364 0.483
(0.811) 		0.34
(0.666) 		1
(1.00) 		0.259
(0.578) 		0.786
(1.00) 		0.544
(0.86) 		0.951
(1.00)
CCDC18 11 (3%) 356 0.286
(0.608) 		1
(1.00) 		0.754
(1.00) 		0.823
(1.00) 		0.345
(0.671) 		0.556
(0.871) 		0.723
(1.00) 		0.309
(0.634) 		0.275
(0.599) 		0.42
(0.754)
CUTC 5 (1%) 362 0.817
(1.00) 		0.841
(1.00) 		0.459
(0.791) 		0.4
(0.731) 		0.928
(1.00) 		0.553
(0.87) 		0.275
(0.599) 		0.503
(0.828)
OR9G4 8 (2%) 359 0.515
(0.838) 		0.68
(0.977) 		0.597
(0.907) 		0.698
(0.989) 		0.554
(0.871) 		0.653
(0.952) 		0.672
(0.97) 		0.0513
(0.243)
C14ORF180 4 (1%) 363 0.338
(0.664) 		0.686
(0.979) 		0.682
(0.977) 		0.451
(0.786) 		0.196
(0.494) 		0.0877
(0.321) 		0.094
(0.334) 		0.367
(0.697) 		0.458
(0.791) 		0.952
(1.00)
CHMP4B 3 (1%) 364 0.0945
(0.335) 		0.614
(0.921) 		0.948
(1.00) 		0.257
(0.575) 		0.298
(0.62) 		0.306
(0.629) 		0.0822
(0.311)
C20ORF43 3 (1%) 364 0.16
(0.441) 		0.292
(0.614) 		0.691
(0.984) 		1
(1.00) 		0.468
(0.796) 		0.785
(1.00)
CIZ1 15 (4%) 352 0.592
(0.904) 		0.765
(1.00) 		0.284
(0.608) 		0.359
(0.687) 		0.561
(0.875) 		0.321
(0.646) 		0.178
(0.468) 		0.0635
(0.271) 		0.0836
(0.314) 		0.606
(0.915) 		0.218
(0.521) 		0.354
(0.682)
ROR1 20 (5%) 347 0.309
(0.634) 		0.857
(1.00) 		0.0801
(0.308) 		0.452
(0.786) 		0.119
(0.381) 		0.304
(0.626) 		0.42
(0.754) 		0.0946
(0.335) 		0.116
(0.375) 		0.154
(0.438)
VN1R4 6 (2%) 361 0.0625
(0.269) 		0.108
(0.362) 		0.451
(0.786) 		0.906
(1.00) 		0.181
(0.473) 		0.298
(0.62) 		0.516
(0.839) 		0.169
(0.454)
SERPINB10 10 (3%) 357 0.186
(0.481) 		0.453
(0.786) 		0.119
(0.381) 		0.263
(0.583) 		0.554
(0.871) 		0.888
(1.00) 		0.602
(0.911) 		0.36
(0.689) 		0.444
(0.781) 		0.391
(0.721) 		0.383
(0.715) 		0.609
(0.918)
TEX13A 10 (3%) 357 0.122
(0.384) 		0.562
(0.876) 		0.0855
(0.317) 		0.461
(0.792) 		0.154
(0.438) 		0.502
(0.827) 		0.115
(0.374) 		0.757
(1.00) 		0.757
(1.00) 		0.966
(1.00)
FAM81B 9 (2%) 358 0.335
(0.66) 		0.396
(0.728) 		0.554
(0.871) 		0.753
(1.00) 		0.297
(0.619) 		0.65
(0.951) 		0.742
(1.00) 		0.326
(0.65)
HIP1 12 (3%) 355 0.654
(0.953) 		0.579
(0.891) 		0.496
(0.822) 		0.54
(0.858) 		0.504
(0.829) 		0.539
(0.858) 		0.536
(0.857) 		0.683
(0.977) 		0.683
(0.977) 		0.0958
(0.337) 		0.879
(1.00) 		0.836
(1.00)
PIAS2 4 (1%) 363 0.464
(0.795) 		0.612
(0.919) 		0.773
(1.00) 		0.245
(0.56) 		0.595
(0.906) 		0.952
(1.00) 		0.954
(1.00)
OR51E2 5 (1%) 362 0.064
(0.272) 		0.681
(0.977) 		0.375
(0.705) 		0.945
(1.00) 		0.607
(0.915) 		0.928
(1.00) 		0.64
(0.942) 		0.927
(1.00) 		0.955
(1.00) 		0.638
(0.941)
EVI2A 7 (2%) 360 0.65
(0.951) 		0.876
(1.00) 		0.894
(1.00) 		0.611
(0.918) 		0.201
(0.499) 		0.521
(0.843) 		0.154
(0.438) 		0.0776
(0.302) 		0.192
(0.488) 		0.22
(0.523)
ACSL3 10 (3%) 357 0.0747
(0.296) 		0.858
(1.00) 		0.223
(0.526) 		0.274
(0.597) 		1
(1.00) 		0.292
(0.614) 		0.0574
(0.256) 		0.692
(0.984) 		0.242
(0.555) 		0.677
(0.974)
CDC7 10 (3%) 357 0.118
(0.379) 		0.287
(0.609) 		0.249
(0.565) 		0.659
(0.957) 		0.467
(0.796) 		0.0518
(0.244) 		0.572
(0.886) 		0.741
(1.00)
FOLR3 6 (2%) 361 0.211
(0.512) 		0.155
(0.439) 		0.487
(0.814) 		0.512
(0.837) 		0.627
(0.932) 		0.855
(1.00) 		0.416
(0.75) 		0.617
(0.923) 		0.662
(0.96) 		0.807
(1.00)
MRPL10 4 (1%) 363 1
(1.00) 		0.295
(0.616) 		0.825
(1.00) 		1
(1.00) 		0.913
(1.00) 		0.595
(0.906) 		0.184
(0.478) 		0.484
(0.812)
ACADVL 6 (2%) 361 0.596
(0.907) 		0.631
(0.934) 		0.37
(0.699) 		0.494
(0.819) 		0.81
(1.00) 		0.301
(0.624) 		0.151
(0.433) 		0.146
(0.426)
UVRAG 7 (2%) 360 0.651
(0.951) 		0.217
(0.519) 		0.541
(0.858) 		0.834
(1.00) 		0.368
(0.697) 		0.833
(1.00) 		0.789
(1.00) 		0.809
(1.00)
C14ORF118 9 (2%) 358 0.346
(0.672) 		0.61
(0.918) 		0.793
(1.00) 		1
(1.00) 		0.734
(1.00) 		0.549
(0.867) 		0.968
(1.00) 		0.806
(1.00) 		0.539
(0.858) 		0.429
(0.763)
IFI35 8 (2%) 359 1
(1.00) 		0.452
(0.786) 		0.882
(1.00) 		0.192
(0.488) 		1
(1.00) 		0.563
(0.877) 		0.335
(0.66) 		0.184
(0.478) 		0.137
(0.409) 		0.847
(1.00)
MGAT5 13 (4%) 354 0.0532
(0.247) 		0.577
(0.891) 		0.336
(0.662) 		0.177
(0.467) 		0.398
(0.73) 		0.355
(0.684) 		0.432
(0.768) 		0.213
(0.514) 		0.7
(0.991) 		0.0829
(0.313) 		0.877
(1.00) 		0.127
(0.393)
C3ORF27 3 (1%) 364 0.72
(1.00) 		0.791
(1.00) 		0.571
(0.885) 		0.538
(0.857) 		0.66
(0.958) 		0.364
(0.694) 		0.53
(0.851)
CCT4 12 (3%) 355 0.913
(1.00) 		0.716
(1.00) 		0.316
(0.642) 		0.768
(1.00) 		0.34
(0.666) 		0.644
(0.946) 		0.42
(0.754) 		0.823
(1.00)
PON3 10 (3%) 357 0.22
(0.523) 		0.321
(0.646) 		0.292
(0.614) 		0.703
(0.993) 		0.529
(0.851) 		0.141
(0.415) 		0.779
(1.00) 		0.277
(0.601) 		0.192
(0.488) 		0.126
(0.391)
NEK3 11 (3%) 356 0.158
(0.439) 		0.813
(1.00) 		0.0872
(0.32) 		0.894
(1.00) 		0.136
(0.407) 		0.206
(0.507) 		1
(1.00) 		0.478
(0.805) 		0.895
(1.00) 		0.555
(0.871)
GSTM5 5 (1%) 362 0.326
(0.65) 		0.209
(0.509) 		1
(1.00) 		0.601
(0.91) 		0.123
(0.386) 		0.352
(0.681) 		0.0842
(0.315) 		0.985
(1.00)
HIST1H3B 4 (1%) 363 0.469
(0.797) 		0.777
(1.00) 		0.559
(0.874) 		0.898
(1.00) 		1
(1.00) 		0.167
(0.45) 		0.685
(0.979) 		0.0959
(0.337)
ZNF391 8 (2%) 359 0.0529
(0.246) 		0.156
(0.439) 		0.334
(0.659) 		0.859
(1.00) 		0.452
(0.786) 		0.536
(0.856) 		1
(1.00) 		0.189
(0.485) 		0.625
(0.931) 		0.647
(0.948)
MOGAT1 4 (1%) 363 0.463
(0.794) 		0.2
(0.498) 		0.0537
(0.247) 		0.633
(0.936) 		0.0654
(0.276) 		0.0794
(0.306) 		0.873
(1.00) 		0.172
(0.459) 		0.715
(1.00) 		0.835
(1.00)
SIGLEC14 8 (2%) 359 0.0867
(0.319) 		0.517
(0.839) 		0.203
(0.502) 		0.498
(0.823) 		0.774
(1.00) 		0.258
(0.576) 		0.294
(0.616) 		0.106
(0.356) 		0.129
(0.396) 		0.952
(1.00)
SFRS12IP1 3 (1%) 364 0.162
(0.444) 		0.202
(0.501) 		0.411
(0.744) 		0.223
(0.525) 		0.183
(0.477) 		0.203
(0.502)
RRP9 12 (3%) 355 0.784
(1.00) 		0.196
(0.494) 		0.201
(0.5) 		0.136
(0.408) 		0.0692
(0.283) 		0.65
(0.951) 		0.978
(1.00) 		0.268
(0.589) 		0.908
(1.00) 		0.12
(0.381)
C1ORF88 6 (2%) 361 0.135
(0.406) 		1
(1.00) 		0.851
(1.00) 		0.461
(0.792) 		1
(1.00) 		0.815
(1.00) 		0.769
(1.00) 		0.389
(0.719)
LGALS9 4 (1%) 363 0.0633
(0.271) 		0.515
(0.838) 		0.827
(1.00) 		0.925
(1.00) 		0.388
(0.719) 		0.18
(0.471) 		0.805
(1.00) 		0.593
(0.905)
ACTL6B 9 (2%) 358 0.892
(1.00) 		0.121
(0.383) 		0.109
(0.363) 		0.888
(1.00) 		0.629
(0.933) 		0.521
(0.843) 		0.289
(0.611) 		0.369
(0.698)
PGM2 3 (1%) 364 1
(1.00) 		0.514
(0.838) 		0.614
(0.921) 		1
(1.00) 		0.407
(0.739) 		0.0988
(0.341) 		0.183
(0.478) 		0.394
(0.724)
UEVLD 3 (1%) 364 0.159
(0.44) 		0.295
(0.616) 		0.0803
(0.308) 		0.221
(0.523) 		0.93
(1.00) 		0.403
(0.735)
NDUFV2 3 (1%) 364 0.0942
(0.335) 		1
(1.00) 		0.41
(0.743) 		0.221
(0.523) 		0.184
(0.478) 		0.855
(1.00)
ATP2B4 18 (5%) 349 0.0737
(0.294) 		0.854
(1.00) 		0.0571
(0.255) 		0.718
(1.00) 		0.0551
(0.25) 		0.0931
(0.333) 		0.421
(0.755) 		0.554
(0.871) 		0.521
(0.843) 		0.576
(0.89) 		0.326
(0.65) 		1
(1.00)
PLEKHA4 10 (3%) 357 0.707
(0.997) 		0.326
(0.65) 		0.187
(0.483) 		0.363
(0.692) 		0.682
(0.977) 		0.306
(0.629) 		0.423
(0.758) 		0.944
(1.00) 		0.779
(1.00) 		0.951
(1.00)
TRIM25 4 (1%) 363 0.0627
(0.269) 		0.646
(0.947) 		1
(1.00) 		0.737
(1.00) 		0.769
(1.00) 		0.334
(0.659) 		0.912
(1.00) 		0.334
(0.659)
S1PR1 11 (3%) 356 0.0699
(0.285) 		0.052
(0.244) 		0.363
(0.693) 		1
(1.00) 		0.222
(0.525) 		0.478
(0.805) 		0.849
(1.00) 		0.149
(0.431) 		0.309
(0.633) 		0.934
(1.00)
NDUFB2 3 (1%) 364 0.0933
(0.333) 		0.792
(1.00) 		0.866
(1.00) 		1
(1.00) 		0.302
(0.625) 		0.465
(0.795) 		0.468
(0.796)
LRRFIP1 12 (3%) 355 0.653
(0.952) 		0.578
(0.891) 		0.07
(0.286) 		0.0689
(0.283) 		0.291
(0.613) 		0.552
(0.87) 		0.623
(0.93) 		0.53
(0.851) 		0.175
(0.463) 		0.963
(1.00)
FOXF2 4 (1%) 363 0.0933
(0.333) 		0.514
(0.837) 		1
(1.00) 		0.864
(1.00) 		0.388
(0.718) 		0.177
(0.467) 		0.742
(1.00) 		0.312
(0.637)
CNKSR3 9 (2%) 358 0.158
(0.439) 		0.121
(0.383) 		0.387
(0.718) 		0.549
(0.866) 		0.269
(0.591) 		0.502
(0.827) 		0.14
(0.414) 		0.668
(0.965) 		0.513
(0.837) 		0.868
(1.00)
C1ORF116 6 (2%) 361 0.485
(0.813) 		0.686
(0.979) 		0.769
(1.00) 		0.996
(1.00) 		0.894
(1.00) 		0.814
(1.00) 		0.688
(0.981) 		0.662
(0.96)
TAOK1 16 (4%) 351 0.787
(1.00) 		0.581
(0.891) 		0.0677
(0.28) 		0.419
(0.753) 		1
(1.00) 		0.954
(1.00) 		0.226
(0.531) 		0.214
(0.516) 		0.477
(0.805) 		0.142
(0.418)
GATA6 4 (1%) 363 0.0939
(0.334) 		0.364
(0.694) 		0.394
(0.725) 		0.245
(0.559) 		0.351
(0.679) 		0.215
(0.517) 		0.212
(0.513)
HLA-G 11 (3%) 356 0.664
(0.961) 		0.695
(0.987) 		0.156
(0.439) 		0.0613
(0.266) 		0.383
(0.715) 		0.052
(0.244) 		0.758
(1.00) 		0.12
(0.381) 		1
(1.00) 		0.71
(0.999)
PPM1B 5 (1%) 362 0.249
(0.565) 		0.333
(0.658) 		0.458
(0.79) 		0.0822
(0.311) 		0.185
(0.48) 		0.117
(0.376) 		0.387
(0.718) 		0.201
(0.5)
HRASLS5 5 (1%) 362 1
(1.00) 		0.399
(0.731) 		1
(1.00) 		0.875
(1.00) 		0.928
(1.00) 		0.0763
(0.299) 		0.525
(0.847) 		0.31
(0.634)
KRT39 7 (2%) 360 0.855
(1.00) 		0.86
(1.00) 		0.894
(1.00) 		0.595
(0.906) 		0.642
(0.944) 		0.652
(0.951) 		0.56
(0.875) 		0.882
(1.00)
IL3 6 (2%) 361 0.21
(0.51) 		0.155
(0.439) 		1
(1.00) 		0.401
(0.733) 		0.0635
(0.271) 		0.704
(0.994) 		0.739
(1.00) 		0.574
(0.888) 		0.43
(0.765) 		0.139
(0.412)
UST 9 (2%) 358 1
(1.00) 		0.435
(0.771) 		0.51
(0.836) 		0.912
(1.00) 		0.0763
(0.299) 		0.12
(0.382) 		0.498
(0.823) 		0.327
(0.651) 		0.631
(0.934) 		0.967
(1.00)
HIST1H1B 7 (2%) 360 0.125
(0.39) 		0.517
(0.839) 		0.201
(0.5) 		0.805
(1.00) 		0.133
(0.404) 		0.0594
(0.26) 		0.302
(0.625) 		0.647
(0.948)
DDX55 10 (3%) 357 1
(1.00) 		0.453
(0.786) 		0.428
(0.763) 		0.0514
(0.243) 		0.28
(0.604) 		0.768
(1.00) 		0.573
(0.887) 		0.178
(0.469) 		0.501
(0.827) 		0.0629
(0.27)
GRAMD1C 11 (3%) 356 0.347
(0.674) 		0.239
(0.55) 		0.333
(0.658) 		0.485
(0.813) 		0.714
(1.00) 		0.438
(0.774) 		0.741
(1.00) 		0.74
(1.00) 		0.87
(1.00) 		0.926
(1.00) 		0.651
(0.951) 		0.134
(0.405)
ZFP1 4 (1%) 363 0.063
(0.27) 		0.468
(0.796) 		0.652
(0.951) 		0.176
(0.466) 		0.588
(0.899)
KIAA0355 7 (2%) 360 0.649
(0.95) 		0.329
(0.654) 		0.243
(0.557) 		0.444
(0.781) 		0.305
(0.628) 		0.182
(0.476) 		0.527
(0.849) 		0.195
(0.494)
HDAC2 7 (2%) 360 0.0985
(0.341) 		0.197
(0.495) 		0.794
(1.00) 		0.757
(1.00) 		0.164
(0.446) 		0.638
(0.94) 		0.272
(0.594) 		0.463
(0.793)
ZNF185 10 (3%) 357 0.0554
(0.25) 		0.157
(0.439) 		0.0548
(0.249) 		0.23
(0.536) 		0.571
(0.885) 		0.0761
(0.299) 		0.509
(0.835) 		0.0812
(0.31) 		0.287
(0.608) 		0.391
(0.721) 		0.483
(0.811) 		0.184
(0.479)
NXT1 5 (1%) 362 0.666
(0.964) 		0.84
(1.00) 		0.731
(1.00) 		0.535
(0.856) 		0.929
(1.00) 		0.814
(1.00) 		0.623
(0.93) 		0.339
(0.666)
OR14J1 8 (2%) 359 1
(1.00) 		0.876
(1.00) 		0.249
(0.565) 		0.24
(0.552) 		0.831
(1.00) 		0.175
(0.463) 		0.456
(0.789) 		0.653
(0.952)
C9ORF41 10 (3%) 357 0.0969
(0.339) 		0.197
(0.495) 		0.054
(0.248) 		1
(1.00) 		0.191
(0.487) 		0.98
(1.00) 		0.6
(0.91) 		0.575
(0.889) 		0.476
(0.804) 		0.49
(0.815)
FAM91A1 10 (3%) 357 0.284
(0.608) 		0.439
(0.775) 		0.251
(0.566) 		0.324
(0.648) 		0.682
(0.977) 		0.316
(0.641) 		0.918
(1.00) 		0.839
(1.00)
BUB1 13 (4%) 354 0.189
(0.485) 		1
(1.00) 		0.0951
(0.336) 		0.914
(1.00) 		0.389
(0.719) 		0.951
(1.00) 		0.319
(0.646) 		0.31
(0.635) 		0.57
(0.884) 		0.196
(0.495)
RARS2 7 (2%) 360 0.286
(0.608) 		0.157
(0.439) 		0.0813
(0.31) 		0.107
(0.359) 		0.294
(0.616) 		1
(1.00) 		0.835
(1.00) 		0.403
(0.735) 		0.927
(1.00) 		0.976
(1.00)
PCDHGA9 12 (3%) 355 0.514
(0.837) 		0.21
(0.511) 		0.0699
(0.285) 		0.895
(1.00) 		0.105
(0.354) 		0.219
(0.521) 		0.741
(1.00) 		0.401
(0.733) 		0.487
(0.814) 		0.564
(0.878)
TFEC 10 (3%) 357 0.222
(0.525) 		0.322
(0.646) 		0.466
(0.796) 		0.552
(0.869) 		0.367
(0.696) 		0.793
(1.00) 		0.344
(0.67) 		0.561
(0.876)
NEFH 13 (4%) 354 0.166
(0.449) 		0.178
(0.468) 		0.543
(0.859) 		0.343
(0.669) 		0.0843
(0.315) 		0.0785
(0.304) 		0.103
(0.35) 		0.186
(0.482)
ZNF286B 5 (1%) 362 0.248
(0.563) 		0.444
(0.781) 		1
(1.00) 		0.383
(0.715) 		0.771
(1.00) 		0.65
(0.951) 		0.522
(0.844) 		0.133
(0.403)
WNT8A 5 (1%) 362 0.818
(1.00) 		0.838
(1.00) 		0.541
(0.858) 		0.518
(0.839) 		0.927
(1.00) 		0.555
(0.871) 		0.237
(0.548) 		0.636
(0.939)
GPR61 9 (2%) 358 0.24
(0.553) 		0.467
(0.796) 		0.512
(0.837) 		0.272
(0.594) 		0.282
(0.608) 		0.768
(1.00) 		0.165
(0.446) 		0.958
(1.00) 		0.435
(0.77) 		0.722
(1.00) 		0.462
(0.792) 		0.966
(1.00)
ALG9 3 (1%) 364 0.722
(1.00) 		0.791
(1.00) 		0.729
(1.00) 		0.257
(0.575) 		0.3
(0.622) 		0.815
(1.00) 		0.697
(0.989)
'APC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S1.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
APC MUTATED 16 13 34 22 15
APC WILD-TYPE 16 5 12 5 8
'APC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0415 (Fisher's exact test), Q value = 0.21

Table S2.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
APC MUTATED 23 51 26
APC WILD-TYPE 20 16 10

Figure S1.  Get High-res Image Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0082 (Fisher's exact test), Q value = 0.085

Table S3.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
APC MUTATED 36 148 106
APC WILD-TYPE 6 25 41

Figure S2.  Get High-res Image Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'APC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 0.16

Table S4.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
APC MUTATED 54 71 64
APC WILD-TYPE 8 2 11

Figure S3.  Get High-res Image Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'APC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S5.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
APC MUTATED 52 102 81
APC WILD-TYPE 18 18 19
'APC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.54

Table S6.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
APC MUTATED 35 21 23 25 26 55 16 13 21
APC WILD-TYPE 6 5 7 4 13 14 4 1 1
'APC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S7.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
APC MUTATED 88 63 62 80
APC WILD-TYPE 12 9 10 41

Figure S4.  Get High-res Image Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'APC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S8.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
APC MUTATED 51 70 62 89 21
APC WILD-TYPE 8 5 12 30 17

Figure S5.  Get High-res Image Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S9.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
APC MUTATED 49 66 50 60 61
APC WILD-TYPE 2 10 11 11 34

Figure S6.  Get High-res Image Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'APC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00731 (Fisher's exact test), Q value = 0.08

Table S10.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
APC MUTATED 63 41 32 13 42 19 13 24 39
APC WILD-TYPE 6 7 7 3 11 1 8 14 11

Figure S7.  Get High-res Image Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.53

Table S11.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
APC MUTATED 13 12 11 11 9 8
APC WILD-TYPE 0 4 3 0 2 1
'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S12.  Gene #1: 'APC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
APC MUTATED 10 6 6 8 6 5 9 9 5
APC WILD-TYPE 1 1 1 1 2 2 2 0 0
'TP53 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00069 (Fisher's exact test), Q value = 0.02

Table S13.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TP53 MUTATED 9 10 34 10 10
TP53 WILD-TYPE 23 8 12 17 13

Figure S8.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TP53 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00295 (Fisher's exact test), Q value = 0.047

Table S14.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TP53 MUTATED 12 40 21
TP53 WILD-TYPE 31 27 15

Figure S9.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S15.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TP53 MUTATED 27 141 60
TP53 WILD-TYPE 15 32 87

Figure S10.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S16.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TP53 MUTATED 47 58 50
TP53 WILD-TYPE 15 15 25
'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S17.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TP53 MUTATED 39 78 65
TP53 WILD-TYPE 31 42 35
'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0686 (Fisher's exact test), Q value = 0.28

Table S18.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TP53 MUTATED 30 12 20 21 18 41 13 9 18
TP53 WILD-TYPE 11 14 10 8 21 28 7 5 4
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00108 (Fisher's exact test), Q value = 0.026

Table S19.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TP53 MUTATED 74 44 52 61
TP53 WILD-TYPE 26 28 20 60

Figure S11.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S20.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TP53 MUTATED 48 56 48 70 9
TP53 WILD-TYPE 11 19 26 49 29

Figure S12.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S21.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TP53 MUTATED 40 50 42 53 42
TP53 WILD-TYPE 11 26 19 18 53

Figure S13.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00132 (Fisher's exact test), Q value = 0.03

Table S22.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TP53 MUTATED 50 36 23 8 37 16 9 14 34
TP53 WILD-TYPE 19 12 16 8 16 4 12 24 16

Figure S14.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S23.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TP53 MUTATED 11 13 10 8 5 9
TP53 WILD-TYPE 2 3 4 3 6 0
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S24.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TP53 MUTATED 9 6 6 6 5 5 7 8 4
TP53 WILD-TYPE 2 1 1 3 3 2 4 1 1
'ARID1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00969 (Fisher's exact test), Q value = 0.093

Table S25.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ARID1A MUTATED 9 2 2 1 1
ARID1A WILD-TYPE 23 16 44 26 22

Figure S15.  Get High-res Image Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARID1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S26.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ARID1A MUTATED 9 3 3
ARID1A WILD-TYPE 34 64 33

Figure S16.  Get High-res Image Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00057 (Fisher's exact test), Q value = 0.017

Table S27.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARID1A MUTATED 8 21 43
ARID1A WILD-TYPE 34 152 104

Figure S17.  Get High-res Image Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S28.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARID1A MUTATED 15 15 26
ARID1A WILD-TYPE 47 58 49
'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S29.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARID1A MUTATED 11 22 26
ARID1A WILD-TYPE 59 98 74
'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S30.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARID1A MUTATED 7 4 5 5 4 19 5 4 6
ARID1A WILD-TYPE 34 22 25 24 35 50 15 10 16
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00764 (Fisher's exact test), Q value = 0.082

Table S31.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARID1A MUTATED 17 23 17 15
ARID1A WILD-TYPE 83 49 55 106

Figure S18.  Get High-res Image Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S32.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARID1A MUTATED 9 18 28 9 8
ARID1A WILD-TYPE 50 57 46 110 30

Figure S19.  Get High-res Image Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00081 (Fisher's exact test), Q value = 0.022

Table S33.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARID1A MUTATED 14 25 12 7 11
ARID1A WILD-TYPE 37 51 49 64 84

Figure S20.  Get High-res Image Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00088 (Fisher's exact test), Q value = 0.023

Table S34.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARID1A MUTATED 15 10 7 9 11 6 1 8 2
ARID1A WILD-TYPE 54 38 32 7 42 14 20 30 48

Figure S21.  Get High-res Image Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 0.29

Table S35.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ARID1A MUTATED 1 1 6 1 4 2
ARID1A WILD-TYPE 12 15 8 10 7 7
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S36.  Gene #3: 'ARID1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ARID1A MUTATED 3 0 1 1 3 2 3 1 1
ARID1A WILD-TYPE 8 7 6 8 5 5 8 8 4
'RNF43 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00194 (Fisher's exact test), Q value = 0.037

Table S37.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RNF43 MUTATED 6 0 0 3 0
RNF43 WILD-TYPE 26 18 46 24 23

Figure S22.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RNF43 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0343 (Fisher's exact test), Q value = 0.2

Table S38.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RNF43 MUTATED 6 3 0
RNF43 WILD-TYPE 37 64 36

Figure S23.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S39.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RNF43 MUTATED 2 2 42
RNF43 WILD-TYPE 40 171 105

Figure S24.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S40.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RNF43 MUTATED 12 2 22
RNF43 WILD-TYPE 50 71 53

Figure S25.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RNF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S41.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RNF43 MUTATED 8 13 20
RNF43 WILD-TYPE 62 107 80
'RNF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S42.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RNF43 MUTATED 4 5 2 6 4 15 3 1 1
RNF43 WILD-TYPE 37 21 28 23 35 54 17 13 21
'RNF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S43.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RNF43 MUTATED 2 21 14 9
RNF43 WILD-TYPE 98 51 58 112

Figure S26.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RNF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S44.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RNF43 MUTATED 0 2 33 6 5
RNF43 WILD-TYPE 59 73 41 113 33

Figure S27.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S45.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RNF43 MUTATED 2 26 5 1 10
RNF43 WILD-TYPE 49 50 56 70 85

Figure S28.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S46.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RNF43 MUTATED 7 10 1 13 2 2 3 6 0
RNF43 WILD-TYPE 62 38 38 3 51 18 18 32 50

Figure S29.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S47.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RNF43 MUTATED 0 1 4 1 7 0
RNF43 WILD-TYPE 13 15 10 10 4 9

Figure S30.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.095

Table S48.  Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RNF43 MUTATED 0 0 0 4 3 2 4 0 0
RNF43 WILD-TYPE 11 7 7 5 5 5 7 9 5

Figure S31.  Get High-res Image Gene #4: 'RNF43 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SOX9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S49.  Gene #5: 'SOX9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SOX9 MUTATED 2 0 3 0 3
SOX9 WILD-TYPE 30 18 43 27 20
'SOX9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S50.  Gene #5: 'SOX9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SOX9 MUTATED 1 4 3
SOX9 WILD-TYPE 42 63 33
'SOX9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00375 (Fisher's exact test), Q value = 0.055

Table S51.  Gene #5: 'SOX9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SOX9 MUTATED 3 9 24
SOX9 WILD-TYPE 39 164 123

Figure S32.  Get High-res Image Gene #5: 'SOX9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SOX9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0059 (Fisher's exact test), Q value = 0.073

Table S52.  Gene #5: 'SOX9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SOX9 MUTATED 6 4 17
SOX9 WILD-TYPE 56 69 58

Figure S33.  Get High-res Image Gene #5: 'SOX9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SOX9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S53.  Gene #5: 'SOX9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SOX9 MUTATED 5 10 8
SOX9 WILD-TYPE 65 110 92
'SOX9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S54.  Gene #5: 'SOX9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SOX9 MUTATED 1 4 1 1 4 7 1 3 1
SOX9 WILD-TYPE 40 22 29 28 35 62 19 11 21
'SOX9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00108 (Fisher's exact test), Q value = 0.026

Table S55.  Gene #5: 'SOX9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SOX9 MUTATED 6 17 4 9
SOX9 WILD-TYPE 94 55 68 112

Figure S34.  Get High-res Image Gene #5: 'SOX9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SOX9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0069

Table S56.  Gene #5: 'SOX9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SOX9 MUTATED 0 11 14 11 0
SOX9 WILD-TYPE 59 64 60 108 38

Figure S35.  Get High-res Image Gene #5: 'SOX9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SOX9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S57.  Gene #5: 'SOX9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SOX9 MUTATED 5 12 3 8 8
SOX9 WILD-TYPE 46 64 58 63 87
'SOX9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S58.  Gene #5: 'SOX9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SOX9 MUTATED 15 3 4 1 2 2 2 4 3
SOX9 WILD-TYPE 54 45 35 15 51 18 19 34 47
'SOX9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.25

Table S59.  Gene #5: 'SOX9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SOX9 MUTATED 2 0 4 0 2 0
SOX9 WILD-TYPE 11 16 10 11 9 9
'SOX9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S60.  Gene #5: 'SOX9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SOX9 MUTATED 1 0 0 2 1 1 1 0 2
SOX9 WILD-TYPE 10 7 7 7 7 6 10 9 3
'FAM123B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S61.  Gene #6: 'FAM123B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FAM123B MUTATED 7 2 6 3 1
FAM123B WILD-TYPE 25 16 40 24 22
'FAM123B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S62.  Gene #6: 'FAM123B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FAM123B MUTATED 9 8 2
FAM123B WILD-TYPE 34 59 34
'FAM123B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00173 (Fisher's exact test), Q value = 0.035

Table S63.  Gene #6: 'FAM123B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM123B MUTATED 5 13 31
FAM123B WILD-TYPE 37 160 116

Figure S36.  Get High-res Image Gene #6: 'FAM123B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM123B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.17

Table S64.  Gene #6: 'FAM123B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM123B MUTATED 6 7 18
FAM123B WILD-TYPE 56 66 57

Figure S37.  Get High-res Image Gene #6: 'FAM123B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FAM123B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S65.  Gene #6: 'FAM123B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM123B MUTATED 7 14 13
FAM123B WILD-TYPE 63 106 87
'FAM123B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S66.  Gene #6: 'FAM123B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM123B MUTATED 6 2 3 1 6 10 3 2 1
FAM123B WILD-TYPE 35 24 27 28 33 59 17 12 21
'FAM123B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S67.  Gene #6: 'FAM123B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM123B MUTATED 11 12 11 16
FAM123B WILD-TYPE 89 60 61 105
'FAM123B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S68.  Gene #6: 'FAM123B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM123B MUTATED 7 14 10 12 7
FAM123B WILD-TYPE 52 61 64 107 31
'FAM123B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S69.  Gene #6: 'FAM123B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM123B MUTATED 6 11 7 8 17
FAM123B WILD-TYPE 45 65 54 63 78
'FAM123B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S70.  Gene #6: 'FAM123B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM123B MUTATED 12 7 2 3 5 4 2 10 4
FAM123B WILD-TYPE 57 41 37 13 48 16 19 28 46
'FAM123B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.9

Table S71.  Gene #6: 'FAM123B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FAM123B MUTATED 4 2 1 1 1 2
FAM123B WILD-TYPE 9 14 13 10 10 7
'FAM123B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S72.  Gene #6: 'FAM123B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FAM123B MUTATED 2 2 1 1 1 0 0 3 1
FAM123B WILD-TYPE 9 5 6 8 7 7 11 6 4
'TXNDC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.99

Table S73.  Gene #7: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TXNDC2 MUTATED 1 11 10
TXNDC2 WILD-TYPE 41 162 137
'TXNDC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.97

Table S74.  Gene #7: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TXNDC2 MUTATED 5 9 6
TXNDC2 WILD-TYPE 57 64 69
'TXNDC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S75.  Gene #7: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TXNDC2 MUTATED 4 5 9
TXNDC2 WILD-TYPE 66 115 91
'TXNDC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.65

Table S76.  Gene #7: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TXNDC2 MUTATED 4 1 0 2 1 7 1 2 0
TXNDC2 WILD-TYPE 37 25 30 27 38 62 19 12 22
'TXNDC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.25

Table S77.  Gene #7: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TXNDC2 MUTATED 9 5 6 2
TXNDC2 WILD-TYPE 91 67 66 119
'TXNDC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-04 (Fisher's exact test), Q value = 0.02

Table S78.  Gene #7: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TXNDC2 MUTATED 8 9 3 1 1
TXNDC2 WILD-TYPE 51 66 71 118 37

Figure S38.  Get High-res Image Gene #7: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TXNDC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.13

Table S79.  Gene #7: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TXNDC2 MUTATED 8 5 5 2 2
TXNDC2 WILD-TYPE 43 71 56 69 93

Figure S39.  Get High-res Image Gene #7: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TXNDC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.36

Table S80.  Gene #7: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TXNDC2 MUTATED 9 4 3 0 2 2 1 1 0
TXNDC2 WILD-TYPE 60 44 36 16 51 18 20 37 50
'TXNDC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S81.  Gene #7: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TXNDC2 MUTATED 1 1 1 2 0 1
TXNDC2 WILD-TYPE 12 15 13 9 11 8
'TXNDC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S82.  Gene #7: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TXNDC2 MUTATED 1 1 1 0 0 1 1 1 0
TXNDC2 WILD-TYPE 10 6 6 9 8 6 10 8 5
'ACVR1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S83.  Gene #8: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ACVR1B MUTATED 5 1 1 3 1
ACVR1B WILD-TYPE 27 17 45 24 22
'ACVR1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S84.  Gene #8: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ACVR1B MUTATED 6 4 1
ACVR1B WILD-TYPE 37 63 35
'ACVR1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00175 (Fisher's exact test), Q value = 0.035

Table S85.  Gene #8: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ACVR1B MUTATED 2 5 19
ACVR1B WILD-TYPE 40 168 128

Figure S40.  Get High-res Image Gene #8: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ACVR1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S86.  Gene #8: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ACVR1B MUTATED 7 3 3
ACVR1B WILD-TYPE 55 70 72
'ACVR1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S87.  Gene #8: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ACVR1B MUTATED 2 10 11
ACVR1B WILD-TYPE 68 110 89
'ACVR1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S88.  Gene #8: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ACVR1B MUTATED 2 1 5 1 3 9 1 0 1
ACVR1B WILD-TYPE 39 25 25 28 36 60 19 14 21
'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S89.  Gene #8: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ACVR1B MUTATED 4 4 6 12
ACVR1B WILD-TYPE 96 68 66 109
'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S90.  Gene #8: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ACVR1B MUTATED 2 3 7 6 8
ACVR1B WILD-TYPE 57 72 67 113 30

Figure S41.  Get High-res Image Gene #8: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.59

Table S91.  Gene #8: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ACVR1B MUTATED 1 7 5 3 10
ACVR1B WILD-TYPE 50 69 56 68 85
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00801 (Fisher's exact test), Q value = 0.084

Table S92.  Gene #8: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ACVR1B MUTATED 3 6 4 1 0 1 3 7 1
ACVR1B WILD-TYPE 66 42 35 15 53 19 18 31 49

Figure S42.  Get High-res Image Gene #8: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S93.  Gene #8: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ACVR1B MUTATED 0 0 1 1 2 0
ACVR1B WILD-TYPE 13 16 13 10 9 9
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.085 (Fisher's exact test), Q value = 0.32

Table S94.  Gene #8: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ACVR1B MUTATED 0 0 0 0 0 1 3 0 0
ACVR1B WILD-TYPE 11 7 7 9 8 6 8 9 5
'B2M MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S95.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
B2M MUTATED 2 0 0 1 0
B2M WILD-TYPE 30 18 46 26 23
'B2M MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S96.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
B2M MUTATED 2 1 0
B2M WILD-TYPE 41 66 36
'B2M MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00194 (Fisher's exact test), Q value = 0.037

Table S97.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
B2M MUTATED 0 2 13
B2M WILD-TYPE 42 171 134

Figure S43.  Get High-res Image Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'B2M MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 0.3

Table S98.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
B2M MUTATED 6 1 6
B2M WILD-TYPE 56 72 69
'B2M MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S99.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
B2M MUTATED 1 5 8
B2M WILD-TYPE 69 115 92
'B2M MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S100.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
B2M MUTATED 1 1 1 1 2 7 0 0 1
B2M WILD-TYPE 40 25 29 28 37 62 20 14 21
'B2M MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 0.31

Table S101.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
B2M MUTATED 1 4 6 4
B2M WILD-TYPE 99 68 66 117
'B2M MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0913 (Fisher's exact test), Q value = 0.33

Table S102.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
B2M MUTATED 1 3 7 2 2
B2M WILD-TYPE 58 72 67 117 36
'B2M MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S103.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
B2M MUTATED 1 7 2 1 4
B2M WILD-TYPE 50 69 59 70 91
'B2M MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0431 (Fisher's exact test), Q value = 0.22

Table S104.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
B2M MUTATED 1 4 0 3 4 1 0 1 1
B2M WILD-TYPE 68 44 39 13 49 19 21 37 49

Figure S44.  Get High-res Image Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0836 (Fisher's exact test), Q value = 0.31

Table S105.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
B2M MUTATED 1 0 1 0 3 0
B2M WILD-TYPE 12 16 13 11 8 9
'B2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0812 (Fisher's exact test), Q value = 0.31

Table S106.  Gene #9: 'B2M MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
B2M MUTATED 0 0 0 2 0 0 3 0 0
B2M WILD-TYPE 11 7 7 7 8 7 8 9 5
'BCOR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.18

Table S107.  Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BCOR MUTATED 4 0 0 1 0
BCOR WILD-TYPE 28 18 46 26 23

Figure S45.  Get High-res Image Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BCOR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0682 (Fisher's exact test), Q value = 0.28

Table S108.  Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BCOR MUTATED 4 1 0
BCOR WILD-TYPE 39 66 36
'BCOR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0021 (Fisher's exact test), Q value = 0.039

Table S109.  Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BCOR MUTATED 3 5 19
BCOR WILD-TYPE 39 168 128

Figure S46.  Get High-res Image Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BCOR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0747 (Fisher's exact test), Q value = 0.3

Table S110.  Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BCOR MUTATED 8 3 11
BCOR WILD-TYPE 54 70 64
'BCOR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S111.  Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BCOR MUTATED 4 7 13
BCOR WILD-TYPE 66 113 87
'BCOR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0968 (Fisher's exact test), Q value = 0.34

Table S112.  Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BCOR MUTATED 1 0 3 3 2 10 4 0 1
BCOR WILD-TYPE 40 26 27 26 37 59 16 14 21
'BCOR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S113.  Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BCOR MUTATED 3 7 11 6
BCOR WILD-TYPE 97 65 61 115

Figure S47.  Get High-res Image Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BCOR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00461 (Fisher's exact test), Q value = 0.063

Table S114.  Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BCOR MUTATED 4 4 13 3 3
BCOR WILD-TYPE 55 71 61 116 35

Figure S48.  Get High-res Image Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BCOR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0453 (Fisher's exact test), Q value = 0.23

Table S115.  Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BCOR MUTATED 5 10 6 1 5
BCOR WILD-TYPE 46 66 55 70 90

Figure S49.  Get High-res Image Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BCOR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00095 (Fisher's exact test), Q value = 0.024

Table S116.  Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BCOR MUTATED 2 7 1 5 4 3 1 4 0
BCOR WILD-TYPE 67 41 38 11 49 17 20 34 50

Figure S50.  Get High-res Image Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S117.  Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BCOR MUTATED 0 2 1 0 3 0
BCOR WILD-TYPE 13 14 13 11 8 9
'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S118.  Gene #10: 'BCOR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BCOR MUTATED 1 1 0 2 1 0 1 0 0
BCOR WILD-TYPE 10 6 7 7 7 7 10 9 5
'CDH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S119.  Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CDH1 MUTATED 2 0 0 2 0
CDH1 WILD-TYPE 30 18 46 25 23
'CDH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S120.  Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CDH1 MUTATED 3 1 0
CDH1 WILD-TYPE 40 66 36
'CDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S121.  Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CDH1 MUTATED 8 28 37
CDH1 WILD-TYPE 34 145 110
'CDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S122.  Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CDH1 MUTATED 21 22 26
CDH1 WILD-TYPE 41 51 49
'CDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0881 (Fisher's exact test), Q value = 0.32

Table S123.  Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CDH1 MUTATED 12 23 30
CDH1 WILD-TYPE 58 97 70
'CDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00046 (Fisher's exact test), Q value = 0.015

Table S124.  Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CDH1 MUTATED 8 3 4 7 5 22 9 7 0
CDH1 WILD-TYPE 33 23 26 22 34 47 11 7 22

Figure S51.  Get High-res Image Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S125.  Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CDH1 MUTATED 27 26 15 6
CDH1 WILD-TYPE 73 46 57 115

Figure S52.  Get High-res Image Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S126.  Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CDH1 MUTATED 16 23 29 2 4
CDH1 WILD-TYPE 43 52 45 117 34

Figure S53.  Get High-res Image Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S127.  Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CDH1 MUTATED 14 34 13 8 4
CDH1 WILD-TYPE 37 42 48 63 91

Figure S54.  Get High-res Image Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S128.  Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CDH1 MUTATED 24 14 7 9 12 4 0 3 0
CDH1 WILD-TYPE 45 34 32 7 41 16 21 35 50

Figure S55.  Get High-res Image Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S129.  Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CDH1 MUTATED 3 3 3 3 4 1
CDH1 WILD-TYPE 10 13 11 8 7 8
'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 0.21

Table S130.  Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CDH1 MUTATED 2 1 0 5 4 0 4 1 0
CDH1 WILD-TYPE 9 6 7 4 4 7 7 8 5

Figure S56.  Get High-res Image Gene #11: 'CDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MLH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S131.  Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MLH1 MUTATED 2 0 1 1 0
MLH1 WILD-TYPE 30 18 45 26 23
'MLH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S132.  Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MLH1 MUTATED 3 1 0
MLH1 WILD-TYPE 40 66 36
'MLH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00632 (Fisher's exact test), Q value = 0.074

Table S133.  Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MLH1 MUTATED 1 22 30
MLH1 WILD-TYPE 41 151 117

Figure S57.  Get High-res Image Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S134.  Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MLH1 MUTATED 14 14 21
MLH1 WILD-TYPE 48 59 54
'MLH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S135.  Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MLH1 MUTATED 9 20 20
MLH1 WILD-TYPE 61 100 80
'MLH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.57

Table S136.  Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MLH1 MUTATED 8 5 3 2 6 18 3 3 1
MLH1 WILD-TYPE 33 21 27 27 33 51 17 11 21
'MLH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S137.  Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MLH1 MUTATED 15 19 14 5
MLH1 WILD-TYPE 85 53 58 116

Figure S58.  Get High-res Image Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MLH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S138.  Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MLH1 MUTATED 13 15 18 4 3
MLH1 WILD-TYPE 46 60 56 115 35

Figure S59.  Get High-res Image Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MLH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S139.  Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MLH1 MUTATED 10 26 8 4 5
MLH1 WILD-TYPE 41 50 53 67 90

Figure S60.  Get High-res Image Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MLH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0075

Table S140.  Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MLH1 MUTATED 17 13 4 5 4 4 2 4 0
MLH1 WILD-TYPE 52 35 35 11 49 16 19 34 50

Figure S61.  Get High-res Image Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S141.  Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MLH1 MUTATED 2 7 2 1 4 1
MLH1 WILD-TYPE 11 9 12 10 7 8
'MLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.99

Table S142.  Gene #12: 'MLH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MLH1 MUTATED 3 3 1 2 1 3 3 1 0
MLH1 WILD-TYPE 8 4 6 7 7 4 8 8 5
'NTAN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S143.  Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NTAN1 MUTATED 2 0 0 1 0
NTAN1 WILD-TYPE 30 18 46 26 23
'NTAN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0393 (Fisher's exact test), Q value = 0.21

Table S144.  Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NTAN1 MUTATED 3 0 0
NTAN1 WILD-TYPE 40 67 36

Figure S62.  Get High-res Image Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NTAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00045 (Fisher's exact test), Q value = 0.015

Table S145.  Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NTAN1 MUTATED 0 0 10
NTAN1 WILD-TYPE 42 173 137

Figure S63.  Get High-res Image Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NTAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0496 (Fisher's exact test), Q value = 0.24

Table S146.  Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NTAN1 MUTATED 2 0 5
NTAN1 WILD-TYPE 60 73 70

Figure S64.  Get High-res Image Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NTAN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S147.  Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NTAN1 MUTATED 1 3 5
NTAN1 WILD-TYPE 69 117 95
'NTAN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S148.  Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NTAN1 MUTATED 1 0 0 1 1 5 0 0 1
NTAN1 WILD-TYPE 40 26 30 28 38 64 20 14 21
'NTAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0452 (Fisher's exact test), Q value = 0.23

Table S149.  Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NTAN1 MUTATED 0 5 2 3
NTAN1 WILD-TYPE 100 67 70 118

Figure S65.  Get High-res Image Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NTAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S150.  Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NTAN1 MUTATED 0 0 7 0 3
NTAN1 WILD-TYPE 59 75 67 119 35

Figure S66.  Get High-res Image Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NTAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00198 (Fisher's exact test), Q value = 0.038

Table S151.  Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NTAN1 MUTATED 0 7 0 0 2
NTAN1 WILD-TYPE 51 69 61 71 93

Figure S67.  Get High-res Image Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NTAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S152.  Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NTAN1 MUTATED 3 1 0 3 0 0 0 2 0
NTAN1 WILD-TYPE 66 47 39 13 53 20 21 36 50

Figure S68.  Get High-res Image Gene #13: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZFP36L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S153.  Gene #14: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZFP36L2 MUTATED 2 6 6
ZFP36L2 WILD-TYPE 40 167 141
'ZFP36L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S154.  Gene #14: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZFP36L2 MUTATED 4 2 7
ZFP36L2 WILD-TYPE 58 71 68
'ZFP36L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0874 (Fisher's exact test), Q value = 0.32

Table S155.  Gene #14: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZFP36L2 MUTATED 0 6 6
ZFP36L2 WILD-TYPE 70 114 94
'ZFP36L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S156.  Gene #14: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZFP36L2 MUTATED 1 0 2 4 0 4 1 0 0
ZFP36L2 WILD-TYPE 40 26 28 25 39 65 19 14 22
'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.64

Table S157.  Gene #14: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZFP36L2 MUTATED 4 5 3 2
ZFP36L2 WILD-TYPE 96 67 69 119
'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S158.  Gene #14: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZFP36L2 MUTATED 2 2 8 2 0
ZFP36L2 WILD-TYPE 57 73 66 117 38

Figure S69.  Get High-res Image Gene #14: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.55

Table S159.  Gene #14: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZFP36L2 MUTATED 3 6 2 1 2
ZFP36L2 WILD-TYPE 48 70 59 70 93
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 9e-04 (Fisher's exact test), Q value = 0.023

Table S160.  Gene #14: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZFP36L2 MUTATED 1 2 1 5 4 0 0 0 1
ZFP36L2 WILD-TYPE 68 46 38 11 49 20 21 38 49

Figure S70.  Get High-res Image Gene #14: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S161.  Gene #14: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZFP36L2 MUTATED 1 0 1 1 2 0
ZFP36L2 WILD-TYPE 12 16 13 10 9 9
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 0.98

Table S162.  Gene #14: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZFP36L2 MUTATED 0 0 0 2 1 0 1 1 0
ZFP36L2 WILD-TYPE 11 7 7 7 7 7 10 8 5
'WNT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S163.  Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WNT1 MUTATED 1 0 6
WNT1 WILD-TYPE 41 173 141

Figure S71.  Get High-res Image Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WNT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.19

Table S164.  Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WNT1 MUTATED 1 0 5
WNT1 WILD-TYPE 61 73 70

Figure S72.  Get High-res Image Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'WNT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S165.  Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WNT1 MUTATED 1 2 4
WNT1 WILD-TYPE 69 118 96
'WNT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S166.  Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WNT1 MUTATED 0 1 1 1 0 4 0 0 0
WNT1 WILD-TYPE 41 25 29 28 39 65 20 14 22
'WNT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00783 (Fisher's exact test), Q value = 0.083

Table S167.  Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WNT1 MUTATED 0 5 1 1
WNT1 WILD-TYPE 100 67 71 120

Figure S73.  Get High-res Image Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'WNT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00044 (Fisher's exact test), Q value = 0.015

Table S168.  Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WNT1 MUTATED 0 0 6 0 1
WNT1 WILD-TYPE 59 75 68 119 37

Figure S74.  Get High-res Image Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WNT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00283 (Fisher's exact test), Q value = 0.046

Table S169.  Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WNT1 MUTATED 0 6 0 0 1
WNT1 WILD-TYPE 51 70 61 71 94

Figure S75.  Get High-res Image Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'WNT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S170.  Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WNT1 MUTATED 1 1 0 4 0 0 0 1 0
WNT1 WILD-TYPE 68 47 39 12 53 20 21 37 50

Figure S76.  Get High-res Image Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'WNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00629 (Fisher's exact test), Q value = 0.074

Table S171.  Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
WNT1 MUTATED 0 0 0 0 3 0
WNT1 WILD-TYPE 13 16 14 11 8 9

Figure S77.  Get High-res Image Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'WNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S172.  Gene #15: 'WNT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
WNT1 MUTATED 0 0 0 2 0 0 1 0 0
WNT1 WILD-TYPE 11 7 7 7 8 7 10 9 5
'BMPR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0053

Table S173.  Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BMPR2 MUTATED 8 0 0 1 0
BMPR2 WILD-TYPE 24 18 46 26 23

Figure S78.  Get High-res Image Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BMPR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S174.  Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BMPR2 MUTATED 9 0 0
BMPR2 WILD-TYPE 34 67 36

Figure S79.  Get High-res Image Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BMPR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S175.  Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BMPR2 MUTATED 1 4 29
BMPR2 WILD-TYPE 41 169 118

Figure S80.  Get High-res Image Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BMPR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00608 (Fisher's exact test), Q value = 0.073

Table S176.  Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BMPR2 MUTATED 6 4 17
BMPR2 WILD-TYPE 56 69 58

Figure S81.  Get High-res Image Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BMPR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.53

Table S177.  Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BMPR2 MUTATED 4 14 14
BMPR2 WILD-TYPE 66 106 86
'BMPR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.23

Table S178.  Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BMPR2 MUTATED 3 2 1 4 2 12 5 3 0
BMPR2 WILD-TYPE 38 24 29 25 37 57 15 11 22

Figure S82.  Get High-res Image Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'BMPR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0081

Table S179.  Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BMPR2 MUTATED 3 17 7 8
BMPR2 WILD-TYPE 97 55 65 113

Figure S83.  Get High-res Image Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BMPR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S180.  Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BMPR2 MUTATED 2 4 20 1 8
BMPR2 WILD-TYPE 57 71 54 118 30

Figure S84.  Get High-res Image Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BMPR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00271 (Fisher's exact test), Q value = 0.044

Table S181.  Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BMPR2 MUTATED 3 16 3 2 9
BMPR2 WILD-TYPE 48 60 58 69 86

Figure S85.  Get High-res Image Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BMPR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S182.  Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BMPR2 MUTATED 6 5 1 9 1 2 1 7 1
BMPR2 WILD-TYPE 63 43 38 7 52 18 20 31 49

Figure S86.  Get High-res Image Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BMPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0783 (Fisher's exact test), Q value = 0.3

Table S183.  Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BMPR2 MUTATED 1 2 0 1 4 0
BMPR2 WILD-TYPE 12 14 14 10 7 9
'BMPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.88

Table S184.  Gene #16: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BMPR2 MUTATED 1 0 0 3 1 0 1 1 1
BMPR2 WILD-TYPE 10 7 7 6 7 7 10 8 4
'SELPLG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S185.  Gene #17: 'SELPLG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SELPLG MUTATED 2 9 5
SELPLG WILD-TYPE 40 164 142
'SELPLG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.18

Table S186.  Gene #17: 'SELPLG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SELPLG MUTATED 6 8 1
SELPLG WILD-TYPE 56 65 74

Figure S87.  Get High-res Image Gene #17: 'SELPLG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SELPLG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S187.  Gene #17: 'SELPLG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SELPLG MUTATED 3 6 7
SELPLG WILD-TYPE 67 114 93
'SELPLG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S188.  Gene #17: 'SELPLG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SELPLG MUTATED 1 1 1 2 2 7 1 0 1
SELPLG WILD-TYPE 40 25 29 27 37 62 19 14 21
'SELPLG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S189.  Gene #17: 'SELPLG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SELPLG MUTATED 7 2 5 2
SELPLG WILD-TYPE 93 70 67 119
'SELPLG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00347 (Fisher's exact test), Q value = 0.052

Table S190.  Gene #17: 'SELPLG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SELPLG MUTATED 5 8 1 1 1
SELPLG WILD-TYPE 54 67 73 118 37

Figure S88.  Get High-res Image Gene #17: 'SELPLG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SELPLG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S191.  Gene #17: 'SELPLG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SELPLG MUTATED 5 5 3 1 2
SELPLG WILD-TYPE 46 71 58 70 93
'SELPLG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S192.  Gene #17: 'SELPLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SELPLG MUTATED 6 1 4 0 3 0 0 1 1
SELPLG WILD-TYPE 63 47 35 16 50 20 21 37 49
'SELPLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S193.  Gene #17: 'SELPLG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SELPLG MUTATED 1 0 1 1 0 1
SELPLG WILD-TYPE 12 16 13 10 11 8
'SELPLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.992 (Fisher's exact test), Q value = 1

Table S194.  Gene #17: 'SELPLG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SELPLG MUTATED 1 0 0 0 1 0 1 1 0
SELPLG WILD-TYPE 10 7 7 9 7 7 10 8 5
'CRIPAK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.56

Table S195.  Gene #18: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CRIPAK MUTATED 4 6 8
CRIPAK WILD-TYPE 38 167 139
'CRIPAK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.1

Table S196.  Gene #18: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CRIPAK MUTATED 7 1 10
CRIPAK WILD-TYPE 55 72 65

Figure S89.  Get High-res Image Gene #18: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CRIPAK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S197.  Gene #18: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CRIPAK MUTATED 5 6 6
CRIPAK WILD-TYPE 65 114 94
'CRIPAK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S198.  Gene #18: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CRIPAK MUTATED 0 0 1 3 2 6 2 2 1
CRIPAK WILD-TYPE 41 26 29 26 37 63 18 12 21
'CRIPAK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00102 (Fisher's exact test), Q value = 0.025

Table S199.  Gene #18: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CRIPAK MUTATED 5 5 8 0
CRIPAK WILD-TYPE 95 67 64 121

Figure S90.  Get High-res Image Gene #18: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CRIPAK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.017

Table S200.  Gene #18: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CRIPAK MUTATED 4 6 8 0 0
CRIPAK WILD-TYPE 55 69 66 119 38

Figure S91.  Get High-res Image Gene #18: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CRIPAK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S201.  Gene #18: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CRIPAK MUTATED 3 5 6 3 1
CRIPAK WILD-TYPE 48 71 55 68 94
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S202.  Gene #18: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CRIPAK MUTATED 6 4 0 2 2 2 0 1 1
CRIPAK WILD-TYPE 63 44 39 14 51 18 21 37 49
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S203.  Gene #18: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CRIPAK MUTATED 2 2 0 1 2 0
CRIPAK WILD-TYPE 11 14 14 10 9 9
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S204.  Gene #18: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CRIPAK MUTATED 2 0 0 1 1 1 0 2 0
CRIPAK WILD-TYPE 9 7 7 8 7 6 11 7 5
'KDM6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S205.  Gene #19: 'KDM6A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KDM6A MUTATED 2 11 14
KDM6A WILD-TYPE 40 162 133
'KDM6A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S206.  Gene #19: 'KDM6A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KDM6A MUTATED 10 7 9
KDM6A WILD-TYPE 52 66 66
'KDM6A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S207.  Gene #19: 'KDM6A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KDM6A MUTATED 3 8 13
KDM6A WILD-TYPE 67 112 87
'KDM6A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.89

Table S208.  Gene #19: 'KDM6A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KDM6A MUTATED 4 0 2 3 3 8 0 1 3
KDM6A WILD-TYPE 37 26 28 26 36 61 20 13 19
'KDM6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00631 (Fisher's exact test), Q value = 0.074

Table S209.  Gene #19: 'KDM6A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KDM6A MUTATED 9 6 10 2
KDM6A WILD-TYPE 91 66 62 119

Figure S92.  Get High-res Image Gene #19: 'KDM6A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KDM6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00023 (Fisher's exact test), Q value = 0.0098

Table S210.  Gene #19: 'KDM6A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KDM6A MUTATED 10 9 6 1 1
KDM6A WILD-TYPE 49 66 68 118 37

Figure S93.  Get High-res Image Gene #19: 'KDM6A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KDM6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0951 (Fisher's exact test), Q value = 0.34

Table S211.  Gene #19: 'KDM6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KDM6A MUTATED 3 9 8 4 3
KDM6A WILD-TYPE 48 67 53 67 92
'KDM6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S212.  Gene #19: 'KDM6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KDM6A MUTATED 6 7 3 2 5 1 0 1 2
KDM6A WILD-TYPE 63 41 36 14 48 19 21 37 48
'KDM6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S213.  Gene #19: 'KDM6A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KDM6A MUTATED 1 1 1 2 0 1
KDM6A WILD-TYPE 12 15 13 9 11 8
'KDM6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S214.  Gene #19: 'KDM6A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KDM6A MUTATED 0 1 1 1 1 0 0 2 0
KDM6A WILD-TYPE 11 6 6 8 7 7 11 7 5
'MAPK6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.76

Table S215.  Gene #20: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAPK6 MUTATED 2 6 10
MAPK6 WILD-TYPE 40 167 137
'MAPK6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S216.  Gene #20: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAPK6 MUTATED 7 2 7
MAPK6 WILD-TYPE 55 71 68
'MAPK6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.27

Table S217.  Gene #20: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAPK6 MUTATED 1 4 9
MAPK6 WILD-TYPE 69 116 91
'MAPK6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.94

Table S218.  Gene #20: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAPK6 MUTATED 4 1 0 2 1 5 1 0 0
MAPK6 WILD-TYPE 37 25 30 27 38 64 19 14 22
'MAPK6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S219.  Gene #20: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAPK6 MUTATED 3 6 5 4
MAPK6 WILD-TYPE 97 66 67 117
'MAPK6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0921 (Fisher's exact test), Q value = 0.33

Table S220.  Gene #20: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAPK6 MUTATED 4 2 8 3 1
MAPK6 WILD-TYPE 55 73 66 116 37
'MAPK6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.27

Table S221.  Gene #20: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAPK6 MUTATED 2 9 3 1 3
MAPK6 WILD-TYPE 49 67 58 70 92
'MAPK6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0426 (Fisher's exact test), Q value = 0.22

Table S222.  Gene #20: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAPK6 MUTATED 6 5 0 3 1 0 1 1 1
MAPK6 WILD-TYPE 63 43 39 13 52 20 20 37 49

Figure S94.  Get High-res Image Gene #20: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAPK6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 0.93

Table S223.  Gene #20: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAPK6 MUTATED 1 0 1 1 2 1
MAPK6 WILD-TYPE 12 16 13 10 9 8
'MAPK6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S224.  Gene #20: 'MAPK6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAPK6 MUTATED 0 0 1 1 1 1 1 0 1
MAPK6 WILD-TYPE 11 7 6 8 7 6 10 9 4
'RHOA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S225.  Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RHOA MUTATED 1 5 6
RHOA WILD-TYPE 41 168 141
'RHOA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S226.  Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RHOA MUTATED 2 2 4
RHOA WILD-TYPE 60 71 71
'RHOA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S227.  Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RHOA MUTATED 2 4 3
RHOA WILD-TYPE 68 116 97
'RHOA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S228.  Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RHOA MUTATED 1 1 2 1 2 1 1 0 0
RHOA WILD-TYPE 40 25 28 28 37 68 19 14 22
'RHOA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S229.  Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RHOA MUTATED 4 2 3 3
RHOA WILD-TYPE 96 70 69 118
'RHOA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S230.  Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RHOA MUTATED 3 2 4 1 2
RHOA WILD-TYPE 56 73 70 118 36
'RHOA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S231.  Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RHOA MUTATED 1 4 2 2 3
RHOA WILD-TYPE 50 72 59 69 92
'RHOA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S232.  Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RHOA MUTATED 2 3 0 1 3 0 1 1 1
RHOA WILD-TYPE 67 45 39 15 50 20 20 37 49
'RHOA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.56

Table S233.  Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RHOA MUTATED 1 0 0 2 1 0
RHOA WILD-TYPE 12 16 14 9 10 9
'RHOA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.63

Table S234.  Gene #21: 'RHOA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RHOA MUTATED 0 0 0 1 0 0 2 0 1
RHOA WILD-TYPE 11 7 7 8 8 7 9 9 4
'FMN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.21

Table S235.  Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FMN2 MUTATED 0 1 0 3 1
FMN2 WILD-TYPE 32 17 46 24 22

Figure S95.  Get High-res Image Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FMN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S236.  Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FMN2 MUTATED 1 3 1
FMN2 WILD-TYPE 42 64 35
'FMN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.01

Table S237.  Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FMN2 MUTATED 1 15 32
FMN2 WILD-TYPE 41 158 115

Figure S96.  Get High-res Image Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FMN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.2

Table S238.  Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FMN2 MUTATED 11 10 23
FMN2 WILD-TYPE 51 63 52

Figure S97.  Get High-res Image Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FMN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00361 (Fisher's exact test), Q value = 0.053

Table S239.  Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FMN2 MUTATED 3 20 22
FMN2 WILD-TYPE 67 100 78

Figure S98.  Get High-res Image Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FMN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00927 (Fisher's exact test), Q value = 0.091

Table S240.  Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FMN2 MUTATED 3 5 3 6 1 18 4 4 1
FMN2 WILD-TYPE 38 21 27 23 38 51 16 10 21

Figure S99.  Get High-res Image Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'FMN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S241.  Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FMN2 MUTATED 12 20 14 3
FMN2 WILD-TYPE 88 52 58 118

Figure S100.  Get High-res Image Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FMN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S242.  Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FMN2 MUTATED 8 12 23 5 1
FMN2 WILD-TYPE 51 63 51 114 37

Figure S101.  Get High-res Image Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FMN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S243.  Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FMN2 MUTATED 7 23 10 5 3
FMN2 WILD-TYPE 44 53 51 66 92

Figure S102.  Get High-res Image Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FMN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S244.  Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FMN2 MUTATED 14 11 4 9 3 4 2 1 0
FMN2 WILD-TYPE 55 37 35 7 50 16 19 37 50

Figure S103.  Get High-res Image Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FMN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.76

Table S245.  Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FMN2 MUTATED 2 4 2 1 5 2
FMN2 WILD-TYPE 11 12 12 10 6 7
'FMN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S246.  Gene #22: 'FMN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FMN2 MUTATED 2 2 0 2 1 2 5 2 0
FMN2 WILD-TYPE 9 5 7 7 7 5 6 7 5
'STARD3NL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 0.19

Table S247.  Gene #23: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STARD3NL MUTATED 0 3 10
STARD3NL WILD-TYPE 42 170 137

Figure S104.  Get High-res Image Gene #23: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STARD3NL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0946 (Fisher's exact test), Q value = 0.34

Table S248.  Gene #23: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STARD3NL MUTATED 3 1 7
STARD3NL WILD-TYPE 59 72 68
'STARD3NL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S249.  Gene #23: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STARD3NL MUTATED 2 5 3
STARD3NL WILD-TYPE 68 115 97
'STARD3NL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0949 (Fisher's exact test), Q value = 0.34

Table S250.  Gene #23: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STARD3NL MUTATED 1 0 2 0 0 2 3 1 1
STARD3NL WILD-TYPE 40 26 28 29 39 67 17 13 21
'STARD3NL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0943 (Fisher's exact test), Q value = 0.33

Table S251.  Gene #23: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STARD3NL MUTATED 2 6 3 2
STARD3NL WILD-TYPE 98 66 69 119
'STARD3NL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0196 (Fisher's exact test), Q value = 0.14

Table S252.  Gene #23: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STARD3NL MUTATED 3 1 7 1 1
STARD3NL WILD-TYPE 56 74 67 118 37

Figure S105.  Get High-res Image Gene #23: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STARD3NL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.14

Table S253.  Gene #23: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STARD3NL MUTATED 3 7 1 0 2
STARD3NL WILD-TYPE 48 69 60 71 93

Figure S106.  Get High-res Image Gene #23: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'STARD3NL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.63

Table S254.  Gene #23: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STARD3NL MUTATED 2 2 1 2 4 1 0 1 0
STARD3NL WILD-TYPE 67 46 38 14 49 19 21 37 50
'STARD3NL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S255.  Gene #23: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
STARD3NL MUTATED 0 1 0 1 1 0
STARD3NL WILD-TYPE 13 15 14 10 10 9
'STARD3NL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.9

Table S256.  Gene #23: 'STARD3NL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
STARD3NL MUTATED 0 1 0 0 0 1 1 0 0
STARD3NL WILD-TYPE 11 6 7 9 8 6 10 9 5
'NF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.89

Table S257.  Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NF2 MUTATED 2 0 1 0 0
NF2 WILD-TYPE 30 18 45 27 23
'NF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S258.  Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NF2 MUTATED 2 0 1
NF2 WILD-TYPE 41 67 35
'NF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.55

Table S259.  Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NF2 MUTATED 7 24 31
NF2 WILD-TYPE 35 149 116
'NF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S260.  Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NF2 MUTATED 21 16 21
NF2 WILD-TYPE 41 57 54
'NF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00599 (Fisher's exact test), Q value = 0.073

Table S261.  Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NF2 MUTATED 9 16 29
NF2 WILD-TYPE 61 104 71

Figure S107.  Get High-res Image Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00097 (Fisher's exact test), Q value = 0.024

Table S262.  Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NF2 MUTATED 5 0 3 7 3 20 6 6 4
NF2 WILD-TYPE 36 26 27 22 36 49 14 8 18

Figure S108.  Get High-res Image Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'NF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S263.  Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NF2 MUTATED 17 22 18 5
NF2 WILD-TYPE 83 50 54 116

Figure S109.  Get High-res Image Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S264.  Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NF2 MUTATED 15 19 23 2 3
NF2 WILD-TYPE 44 56 51 117 35

Figure S110.  Get High-res Image Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S265.  Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NF2 MUTATED 14 29 12 3 4
NF2 WILD-TYPE 37 47 49 68 91

Figure S111.  Get High-res Image Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S266.  Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NF2 MUTATED 16 14 2 9 13 3 0 3 2
NF2 WILD-TYPE 53 34 37 7 40 17 21 35 48

Figure S112.  Get High-res Image Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S267.  Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NF2 MUTATED 1 3 4 3 2 0
NF2 WILD-TYPE 12 13 10 8 9 9
'NF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 0.16

Table S268.  Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NF2 MUTATED 0 3 2 1 4 2 1 0 0
NF2 WILD-TYPE 11 4 5 8 4 5 10 9 5

Figure S113.  Get High-res Image Gene #24: 'NF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0629 (Fisher's exact test), Q value = 0.27

Table S269.  Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NF1 MUTATED 4 0 0 2 1
NF1 WILD-TYPE 28 18 46 25 22
'NF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S270.  Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NF1 MUTATED 4 1 2
NF1 WILD-TYPE 39 66 34
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.54

Table S271.  Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NF1 MUTATED 8 38 43
NF1 WILD-TYPE 34 135 104
'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S272.  Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NF1 MUTATED 27 23 33
NF1 WILD-TYPE 35 50 42
'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0099 (Fisher's exact test), Q value = 0.094

Table S273.  Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NF1 MUTATED 11 29 36
NF1 WILD-TYPE 59 91 64

Figure S114.  Get High-res Image Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00208 (Fisher's exact test), Q value = 0.039

Table S274.  Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NF1 MUTATED 9 1 4 9 6 28 7 6 6
NF1 WILD-TYPE 32 25 26 20 33 41 13 8 16

Figure S115.  Get High-res Image Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S275.  Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NF1 MUTATED 26 33 22 8
NF1 WILD-TYPE 74 39 50 113

Figure S116.  Get High-res Image Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S276.  Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NF1 MUTATED 18 28 35 4 4
NF1 WILD-TYPE 41 47 39 115 34

Figure S117.  Get High-res Image Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S277.  Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NF1 MUTATED 20 40 17 6 5
NF1 WILD-TYPE 31 36 44 65 90

Figure S118.  Get High-res Image Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S278.  Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NF1 MUTATED 26 16 4 10 17 9 2 3 1
NF1 WILD-TYPE 43 32 35 6 36 11 19 35 49

Figure S119.  Get High-res Image Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.998 (Fisher's exact test), Q value = 1

Table S279.  Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NF1 MUTATED 4 6 6 4 4 3
NF1 WILD-TYPE 9 10 8 7 7 6
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S280.  Gene #25: 'NF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NF1 MUTATED 2 3 2 3 3 6 4 1 3
NF1 WILD-TYPE 9 4 5 6 5 1 7 8 2
'OR4D10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S281.  Gene #26: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR4D10 MUTATED 1 5 8
OR4D10 WILD-TYPE 41 168 139
'OR4D10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S282.  Gene #26: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR4D10 MUTATED 7 2 3
OR4D10 WILD-TYPE 55 71 72
'OR4D10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.11

Table S283.  Gene #26: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR4D10 MUTATED 0 4 9
OR4D10 WILD-TYPE 70 116 91

Figure S120.  Get High-res Image Gene #26: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'OR4D10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S284.  Gene #26: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR4D10 MUTATED 2 1 1 0 1 7 0 1 0
OR4D10 WILD-TYPE 39 25 29 29 38 62 20 13 22
'OR4D10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 0.29

Table S285.  Gene #26: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR4D10 MUTATED 2 2 7 3
OR4D10 WILD-TYPE 98 70 65 118
'OR4D10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0899 (Fisher's exact test), Q value = 0.33

Table S286.  Gene #26: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR4D10 MUTATED 4 5 2 1 2
OR4D10 WILD-TYPE 55 70 72 118 36
'OR4D10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S287.  Gene #26: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR4D10 MUTATED 6 3 2 0 2
OR4D10 WILD-TYPE 45 73 59 71 93

Figure S121.  Get High-res Image Gene #26: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR4D10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S288.  Gene #26: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR4D10 MUTATED 3 5 1 0 1 1 0 1 1
OR4D10 WILD-TYPE 66 43 38 16 52 19 21 37 49
'OR4D10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S289.  Gene #26: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR4D10 MUTATED 1 1 0 0 2 1
OR4D10 WILD-TYPE 12 15 14 11 9 8
'OR4D10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.82

Table S290.  Gene #26: 'OR4D10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR4D10 MUTATED 1 1 0 0 0 0 2 0 1
OR4D10 WILD-TYPE 10 6 7 9 8 7 9 9 4
'PRKDC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00225 (Fisher's exact test), Q value = 0.04

Table S291.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PRKDC MUTATED 6 0 0 3 0
PRKDC WILD-TYPE 26 18 46 24 23

Figure S122.  Get High-res Image Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PRKDC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00681 (Fisher's exact test), Q value = 0.077

Table S292.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PRKDC MUTATED 7 1 1
PRKDC WILD-TYPE 36 66 35

Figure S123.  Get High-res Image Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PRKDC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.012

Table S293.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRKDC MUTATED 3 20 40
PRKDC WILD-TYPE 39 153 107

Figure S124.  Get High-res Image Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PRKDC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S294.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRKDC MUTATED 19 16 19
PRKDC WILD-TYPE 43 57 56
'PRKDC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 0.18

Table S295.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRKDC MUTATED 6 23 24
PRKDC WILD-TYPE 64 97 76

Figure S125.  Get High-res Image Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PRKDC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S296.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRKDC MUTATED 8 4 3 5 5 19 5 3 1
PRKDC WILD-TYPE 33 22 27 24 34 50 15 11 21
'PRKDC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00278 (Fisher's exact test), Q value = 0.045

Table S297.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRKDC MUTATED 17 19 17 10
PRKDC WILD-TYPE 83 53 55 111

Figure S126.  Get High-res Image Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PRKDC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S298.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRKDC MUTATED 10 18 25 4 6
PRKDC WILD-TYPE 49 57 49 115 32

Figure S127.  Get High-res Image Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PRKDC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S299.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRKDC MUTATED 10 29 8 7 8
PRKDC WILD-TYPE 41 47 53 64 87

Figure S128.  Get High-res Image Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PRKDC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00279 (Fisher's exact test), Q value = 0.045

Table S300.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRKDC MUTATED 18 12 4 7 9 4 2 4 2
PRKDC WILD-TYPE 51 36 35 9 44 16 19 34 48

Figure S129.  Get High-res Image Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PRKDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 0.29

Table S301.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PRKDC MUTATED 1 2 5 2 6 1
PRKDC WILD-TYPE 12 14 9 9 5 8
'PRKDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S302.  Gene #27: 'PRKDC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PRKDC MUTATED 1 1 1 3 4 2 4 1 0
PRKDC WILD-TYPE 10 6 6 6 4 5 7 8 5
'MGA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 0.18

Table S303.  Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MGA MUTATED 4 1 0 3 0
MGA WILD-TYPE 28 17 46 24 23

Figure S130.  Get High-res Image Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MGA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S304.  Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MGA MUTATED 4 2 2
MGA WILD-TYPE 39 65 34
'MGA MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S305.  Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MGA MUTATED 2 5 30
MGA WILD-TYPE 40 168 117

Figure S131.  Get High-res Image Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S306.  Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MGA MUTATED 12 4 11
MGA WILD-TYPE 50 69 64

Figure S132.  Get High-res Image Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S307.  Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MGA MUTATED 7 14 11
MGA WILD-TYPE 63 106 89
'MGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S308.  Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MGA MUTATED 2 3 3 4 4 10 2 2 2
MGA WILD-TYPE 39 23 27 25 35 59 18 12 20
'MGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 0.2

Table S309.  Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MGA MUTATED 5 13 9 10
MGA WILD-TYPE 95 59 63 111

Figure S133.  Get High-res Image Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S310.  Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MGA MUTATED 2 5 19 6 5
MGA WILD-TYPE 57 70 55 113 33

Figure S134.  Get High-res Image Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S311.  Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MGA MUTATED 5 13 6 4 8
MGA WILD-TYPE 46 63 55 67 87
'MGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S312.  Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MGA MUTATED 7 7 1 4 6 4 1 4 2
MGA WILD-TYPE 62 41 38 12 47 16 20 34 48
'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S313.  Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MGA MUTATED 1 1 1 0 1 0
MGA WILD-TYPE 12 15 13 11 10 9
'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S314.  Gene #28: 'MGA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MGA MUTATED 1 0 0 1 1 1 0 0 0
MGA WILD-TYPE 10 7 7 8 7 6 11 9 5
'P2RY13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0055 (Fisher's exact test), Q value = 0.07

Table S315.  Gene #29: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
P2RY13 MUTATED 1 2 12
P2RY13 WILD-TYPE 41 171 135

Figure S135.  Get High-res Image Gene #29: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'P2RY13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S316.  Gene #29: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
P2RY13 MUTATED 3 2 8
P2RY13 WILD-TYPE 59 71 67
'P2RY13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S317.  Gene #29: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
P2RY13 MUTATED 1 4 5
P2RY13 WILD-TYPE 69 116 95
'P2RY13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S318.  Gene #29: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
P2RY13 MUTATED 1 2 0 1 1 4 0 0 1
P2RY13 WILD-TYPE 40 24 30 28 38 65 20 14 21
'P2RY13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S319.  Gene #29: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
P2RY13 MUTATED 4 6 3 2
P2RY13 WILD-TYPE 96 66 69 119
'P2RY13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0669 (Fisher's exact test), Q value = 0.28

Table S320.  Gene #29: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
P2RY13 MUTATED 2 5 6 1 1
P2RY13 WILD-TYPE 57 70 68 118 37
'P2RY13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 0.34

Table S321.  Gene #29: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
P2RY13 MUTATED 3 7 2 2 1
P2RY13 WILD-TYPE 48 69 59 69 94
'P2RY13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0711 (Fisher's exact test), Q value = 0.29

Table S322.  Gene #29: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
P2RY13 MUTATED 3 2 1 3 5 0 0 1 0
P2RY13 WILD-TYPE 66 46 38 13 48 20 21 37 50
'P2RY13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S323.  Gene #29: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
P2RY13 MUTATED 0 1 0 1 1 0
P2RY13 WILD-TYPE 13 15 14 10 10 9
'P2RY13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S324.  Gene #29: 'P2RY13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
P2RY13 MUTATED 1 0 0 1 0 0 1 0 0
P2RY13 WILD-TYPE 10 7 7 8 8 7 10 9 5
'MVK MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S325.  Gene #30: 'MVK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MVK MUTATED 0 0 14
MVK WILD-TYPE 42 173 133

Figure S136.  Get High-res Image Gene #30: 'MVK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MVK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00806 (Fisher's exact test), Q value = 0.084

Table S326.  Gene #30: 'MVK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MVK MUTATED 4 0 8
MVK WILD-TYPE 58 73 67

Figure S137.  Get High-res Image Gene #30: 'MVK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MVK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S327.  Gene #30: 'MVK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MVK MUTATED 2 4 8
MVK WILD-TYPE 68 116 92
'MVK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S328.  Gene #30: 'MVK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MVK MUTATED 2 2 1 2 0 6 1 0 0
MVK WILD-TYPE 39 24 29 27 39 63 19 14 22
'MVK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00129 (Fisher's exact test), Q value = 0.029

Table S329.  Gene #30: 'MVK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MVK MUTATED 0 6 6 2
MVK WILD-TYPE 100 66 66 119

Figure S138.  Get High-res Image Gene #30: 'MVK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MVK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S330.  Gene #30: 'MVK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MVK MUTATED 1 0 10 1 2
MVK WILD-TYPE 58 75 64 118 36

Figure S139.  Get High-res Image Gene #30: 'MVK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0098

Table S331.  Gene #30: 'MVK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MVK MUTATED 0 10 1 0 3
MVK WILD-TYPE 51 66 60 71 92

Figure S140.  Get High-res Image Gene #30: 'MVK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MVK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00033 (Fisher's exact test), Q value = 0.012

Table S332.  Gene #30: 'MVK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MVK MUTATED 2 5 0 4 0 0 0 3 0
MVK WILD-TYPE 67 43 39 12 53 20 21 35 50

Figure S141.  Get High-res Image Gene #30: 'MVK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S333.  Gene #30: 'MVK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MVK MUTATED 0 1 1 0 3 0
MVK WILD-TYPE 13 15 13 11 8 9
'MVK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S334.  Gene #30: 'MVK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MVK MUTATED 0 0 0 1 0 2 2 0 0
MVK WILD-TYPE 11 7 7 8 8 5 9 9 5
'ATXN3L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S335.  Gene #31: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATXN3L MUTATED 1 0 0 2 0
ATXN3L WILD-TYPE 31 18 46 25 23
'ATXN3L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.79

Table S336.  Gene #31: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATXN3L MUTATED 2 1 0
ATXN3L WILD-TYPE 41 66 36
'ATXN3L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S337.  Gene #31: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATXN3L MUTATED 2 7 8
ATXN3L WILD-TYPE 40 166 139
'ATXN3L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S338.  Gene #31: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATXN3L MUTATED 5 4 5
ATXN3L WILD-TYPE 57 69 70
'ATXN3L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.55

Table S339.  Gene #31: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATXN3L MUTATED 7 5 5
ATXN3L WILD-TYPE 63 115 95
'ATXN3L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.65

Table S340.  Gene #31: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATXN3L MUTATED 4 0 0 2 3 3 3 1 1
ATXN3L WILD-TYPE 37 26 30 27 36 66 17 13 21
'ATXN3L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.92

Table S341.  Gene #31: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATXN3L MUTATED 4 4 5 4
ATXN3L WILD-TYPE 96 68 67 117
'ATXN3L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0989 (Fisher's exact test), Q value = 0.34

Table S342.  Gene #31: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATXN3L MUTATED 5 2 6 2 2
ATXN3L WILD-TYPE 54 73 68 117 36
'ATXN3L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00485 (Fisher's exact test), Q value = 0.065

Table S343.  Gene #31: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATXN3L MUTATED 4 5 6 0 1
ATXN3L WILD-TYPE 47 71 55 71 94

Figure S142.  Get High-res Image Gene #31: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ATXN3L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S344.  Gene #31: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATXN3L MUTATED 2 6 1 1 2 1 2 1 0
ATXN3L WILD-TYPE 67 42 38 15 51 19 19 37 50
'ATXN3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S345.  Gene #31: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ATXN3L MUTATED 0 2 0 1 1 0
ATXN3L WILD-TYPE 13 14 14 10 10 9
'ATXN3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S346.  Gene #31: 'ATXN3L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ATXN3L MUTATED 1 1 0 1 0 0 1 0 0
ATXN3L WILD-TYPE 10 6 7 8 8 7 10 9 5
'FBXW7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00967 (Fisher's exact test), Q value = 0.093

Table S347.  Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FBXW7 MUTATED 13 2 4 4 3
FBXW7 WILD-TYPE 19 16 42 23 20

Figure S143.  Get High-res Image Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FBXW7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0491 (Fisher's exact test), Q value = 0.24

Table S348.  Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FBXW7 MUTATED 13 9 4
FBXW7 WILD-TYPE 30 58 32

Figure S144.  Get High-res Image Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S349.  Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FBXW7 MUTATED 7 36 59
FBXW7 WILD-TYPE 35 137 88

Figure S145.  Get High-res Image Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FBXW7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S350.  Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FBXW7 MUTATED 22 23 30
FBXW7 WILD-TYPE 40 50 45
'FBXW7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00124 (Fisher's exact test), Q value = 0.029

Table S351.  Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FBXW7 MUTATED 12 30 42
FBXW7 WILD-TYPE 58 90 58

Figure S146.  Get High-res Image Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FBXW7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.72

Table S352.  Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FBXW7 MUTATED 11 6 4 9 12 27 5 5 5
FBXW7 WILD-TYPE 30 20 26 20 27 42 15 9 17
'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.18

Table S353.  Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FBXW7 MUTATED 23 28 25 27
FBXW7 WILD-TYPE 77 44 47 94

Figure S147.  Get High-res Image Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S354.  Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FBXW7 MUTATED 16 25 32 15 15
FBXW7 WILD-TYPE 43 50 42 104 23

Figure S148.  Get High-res Image Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00152 (Fisher's exact test), Q value = 0.032

Table S355.  Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FBXW7 MUTATED 18 33 14 10 26
FBXW7 WILD-TYPE 33 43 47 61 69

Figure S149.  Get High-res Image Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.0093

Table S356.  Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FBXW7 MUTATED 16 21 8 11 15 8 3 13 6
FBXW7 WILD-TYPE 53 27 31 5 38 12 18 25 44

Figure S150.  Get High-res Image Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.6

Table S357.  Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FBXW7 MUTATED 5 4 3 5 6 1
FBXW7 WILD-TYPE 8 12 11 6 5 8
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S358.  Gene #32: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FBXW7 MUTATED 2 2 3 6 1 2 3 3 2
FBXW7 WILD-TYPE 9 5 4 3 7 5 8 6 3
'DIP2B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.77

Table S359.  Gene #33: 'DIP2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DIP2B MUTATED 4 1 1 2 1
DIP2B WILD-TYPE 28 17 45 25 22
'DIP2B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S360.  Gene #33: 'DIP2B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DIP2B MUTATED 5 2 2
DIP2B WILD-TYPE 38 65 34
'DIP2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S361.  Gene #33: 'DIP2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DIP2B MUTATED 2 9 16
DIP2B WILD-TYPE 40 164 131
'DIP2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S362.  Gene #33: 'DIP2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DIP2B MUTATED 1 7 10
DIP2B WILD-TYPE 61 66 65

Figure S151.  Get High-res Image Gene #33: 'DIP2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DIP2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S363.  Gene #33: 'DIP2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DIP2B MUTATED 3 10 10
DIP2B WILD-TYPE 67 110 90
'DIP2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S364.  Gene #33: 'DIP2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DIP2B MUTATED 2 0 2 3 2 8 2 3 1
DIP2B WILD-TYPE 39 26 28 26 37 61 18 11 21
'DIP2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S365.  Gene #33: 'DIP2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DIP2B MUTATED 7 10 3 7
DIP2B WILD-TYPE 93 62 69 114
'DIP2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0947 (Fisher's exact test), Q value = 0.34

Table S366.  Gene #33: 'DIP2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DIP2B MUTATED 1 9 8 6 3
DIP2B WILD-TYPE 58 66 66 113 35
'DIP2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S367.  Gene #33: 'DIP2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DIP2B MUTATED 5 10 2 2 7
DIP2B WILD-TYPE 46 66 59 69 88
'DIP2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00409 (Fisher's exact test), Q value = 0.058

Table S368.  Gene #33: 'DIP2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DIP2B MUTATED 3 1 1 4 7 4 3 2 1
DIP2B WILD-TYPE 66 47 38 12 46 16 18 36 49

Figure S152.  Get High-res Image Gene #33: 'DIP2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RBMX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S369.  Gene #34: 'RBMX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RBMX MUTATED 1 4 13
RBMX WILD-TYPE 41 169 134

Figure S153.  Get High-res Image Gene #34: 'RBMX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBMX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S370.  Gene #34: 'RBMX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RBMX MUTATED 7 3 7
RBMX WILD-TYPE 55 70 68
'RBMX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.21

Table S371.  Gene #34: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RBMX MUTATED 3 2 9
RBMX WILD-TYPE 67 118 91

Figure S154.  Get High-res Image Gene #34: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RBMX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.53

Table S372.  Gene #34: 'RBMX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RBMX MUTATED 3 1 0 1 0 7 0 0 2
RBMX WILD-TYPE 38 25 30 28 39 62 20 14 20
'RBMX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0098

Table S373.  Gene #34: 'RBMX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RBMX MUTATED 2 5 10 1
RBMX WILD-TYPE 98 67 62 120

Figure S155.  Get High-res Image Gene #34: 'RBMX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RBMX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00174 (Fisher's exact test), Q value = 0.035

Table S374.  Gene #34: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RBMX MUTATED 5 3 9 1 0
RBMX WILD-TYPE 54 72 65 118 38

Figure S156.  Get High-res Image Gene #34: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBMX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S375.  Gene #34: 'RBMX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RBMX MUTATED 1 10 6 0 1
RBMX WILD-TYPE 50 66 55 71 94

Figure S157.  Get High-res Image Gene #34: 'RBMX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RBMX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S376.  Gene #34: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RBMX MUTATED 5 5 1 2 3 1 0 0 1
RBMX WILD-TYPE 64 43 38 14 50 19 21 38 49
'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S377.  Gene #34: 'RBMX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RBMX MUTATED 0 1 1 1 1 0
RBMX WILD-TYPE 13 15 13 10 10 9
'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0843 (Fisher's exact test), Q value = 0.32

Table S378.  Gene #34: 'RBMX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RBMX MUTATED 0 0 0 0 0 2 2 0 0
RBMX WILD-TYPE 11 7 7 9 8 5 9 9 5
'SMAD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.096

Table S379.  Gene #35: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SMAD2 MUTATED 1 2 0 5 1
SMAD2 WILD-TYPE 31 16 46 22 22

Figure S158.  Get High-res Image Gene #35: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SMAD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S380.  Gene #35: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SMAD2 MUTATED 5 4 0
SMAD2 WILD-TYPE 38 63 36
'SMAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.2

Table S381.  Gene #35: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SMAD2 MUTATED 3 3 10
SMAD2 WILD-TYPE 39 170 137

Figure S159.  Get High-res Image Gene #35: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SMAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S382.  Gene #35: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SMAD2 MUTATED 3 0 3
SMAD2 WILD-TYPE 59 73 72
'SMAD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S383.  Gene #35: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SMAD2 MUTATED 1 6 5
SMAD2 WILD-TYPE 69 114 95
'SMAD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 0.99

Table S384.  Gene #35: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SMAD2 MUTATED 2 3 1 0 2 3 1 0 0
SMAD2 WILD-TYPE 39 23 29 29 37 66 19 14 22
'SMAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.09 (Fisher's exact test), Q value = 0.33

Table S385.  Gene #35: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SMAD2 MUTATED 1 4 2 9
SMAD2 WILD-TYPE 99 68 70 112
'SMAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S386.  Gene #35: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SMAD2 MUTATED 2 1 2 8 3
SMAD2 WILD-TYPE 57 74 72 111 35
'SMAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0885 (Fisher's exact test), Q value = 0.32

Table S387.  Gene #35: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SMAD2 MUTATED 1 3 1 1 9
SMAD2 WILD-TYPE 50 73 60 70 86
'SMAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 0.91

Table S388.  Gene #35: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SMAD2 MUTATED 1 2 1 1 3 0 2 3 2
SMAD2 WILD-TYPE 68 46 38 15 50 20 19 35 48
'ASXL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.07 (Fisher's exact test), Q value = 0.29

Table S389.  Gene #36: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ASXL1 MUTATED 3 0 1 4 0
ASXL1 WILD-TYPE 29 18 45 23 23
'ASXL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S390.  Gene #36: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ASXL1 MUTATED 4 3 1
ASXL1 WILD-TYPE 39 64 35
'ASXL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S391.  Gene #36: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ASXL1 MUTATED 2 13 25
ASXL1 WILD-TYPE 40 160 122

Figure S160.  Get High-res Image Gene #36: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ASXL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S392.  Gene #36: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ASXL1 MUTATED 12 9 11
ASXL1 WILD-TYPE 50 64 64
'ASXL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S393.  Gene #36: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ASXL1 MUTATED 4 17 14
ASXL1 WILD-TYPE 66 103 86
'ASXL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S394.  Gene #36: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ASXL1 MUTATED 3 3 4 2 2 11 4 3 3
ASXL1 WILD-TYPE 38 23 26 27 37 58 16 11 19
'ASXL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 0.22

Table S395.  Gene #36: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ASXL1 MUTATED 8 11 13 8
ASXL1 WILD-TYPE 92 61 59 113

Figure S161.  Get High-res Image Gene #36: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ASXL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0282 (Fisher's exact test), Q value = 0.18

Table S396.  Gene #36: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ASXL1 MUTATED 9 8 14 6 3
ASXL1 WILD-TYPE 50 67 60 113 35

Figure S162.  Get High-res Image Gene #36: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ASXL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S397.  Gene #36: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ASXL1 MUTATED 9 12 5 4 9
ASXL1 WILD-TYPE 42 64 56 67 86
'ASXL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S398.  Gene #36: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ASXL1 MUTATED 8 8 5 1 8 4 1 2 2
ASXL1 WILD-TYPE 61 40 34 15 45 16 20 36 48
'ASXL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.86

Table S399.  Gene #36: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ASXL1 MUTATED 2 4 3 0 3 2
ASXL1 WILD-TYPE 11 12 11 11 8 7
'ASXL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S400.  Gene #36: 'ASXL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ASXL1 MUTATED 2 2 1 1 2 0 5 1 0
ASXL1 WILD-TYPE 9 5 6 8 6 7 6 8 5
'ALG12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S401.  Gene #37: 'ALG12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ALG12 MUTATED 1 1 5
ALG12 WILD-TYPE 41 172 142
'ALG12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S402.  Gene #37: 'ALG12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ALG12 MUTATED 0 0 5
ALG12 WILD-TYPE 62 73 70

Figure S163.  Get High-res Image Gene #37: 'ALG12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ALG12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.93

Table S403.  Gene #37: 'ALG12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ALG12 MUTATED 2 4 1
ALG12 WILD-TYPE 68 116 99
'ALG12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S404.  Gene #37: 'ALG12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ALG12 MUTATED 1 1 1 2 1 1 0 0 0
ALG12 WILD-TYPE 40 25 29 27 38 68 20 14 22
'ALG12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00697 (Fisher's exact test), Q value = 0.078

Table S405.  Gene #37: 'ALG12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ALG12 MUTATED 0 5 0 2
ALG12 WILD-TYPE 100 67 72 119

Figure S164.  Get High-res Image Gene #37: 'ALG12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ALG12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S406.  Gene #37: 'ALG12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ALG12 MUTATED 0 0 4 2 1
ALG12 WILD-TYPE 59 75 70 117 37
'ALG12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0788 (Fisher's exact test), Q value = 0.3

Table S407.  Gene #37: 'ALG12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ALG12 MUTATED 0 4 0 0 3
ALG12 WILD-TYPE 51 72 61 71 92
'ALG12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0952 (Fisher's exact test), Q value = 0.34

Table S408.  Gene #37: 'ALG12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ALG12 MUTATED 1 1 1 2 0 0 0 2 0
ALG12 WILD-TYPE 68 47 38 14 53 20 21 36 50
'NR1H3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S409.  Gene #38: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NR1H3 MUTATED 2 0 1 1 0
NR1H3 WILD-TYPE 30 18 45 26 23
'NR1H3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S410.  Gene #38: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NR1H3 MUTATED 3 1 0
NR1H3 WILD-TYPE 40 66 36
'NR1H3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S411.  Gene #38: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NR1H3 MUTATED 1 5 9
NR1H3 WILD-TYPE 41 168 138
'NR1H3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S412.  Gene #38: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NR1H3 MUTATED 5 3 3
NR1H3 WILD-TYPE 57 70 72
'NR1H3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0754 (Fisher's exact test), Q value = 0.3

Table S413.  Gene #38: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NR1H3 MUTATED 1 3 8
NR1H3 WILD-TYPE 69 117 92
'NR1H3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S414.  Gene #38: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NR1H3 MUTATED 1 0 1 0 1 7 1 1 0
NR1H3 WILD-TYPE 40 26 29 29 38 62 19 13 22
'NR1H3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.99

Table S415.  Gene #38: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NR1H3 MUTATED 5 3 4 3
NR1H3 WILD-TYPE 95 69 68 118
'NR1H3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.058 (Fisher's exact test), Q value = 0.26

Table S416.  Gene #38: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NR1H3 MUTATED 2 3 6 1 3
NR1H3 WILD-TYPE 57 72 68 118 35
'NR1H3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0413 (Fisher's exact test), Q value = 0.21

Table S417.  Gene #38: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NR1H3 MUTATED 2 8 1 1 2
NR1H3 WILD-TYPE 49 68 60 70 93

Figure S165.  Get High-res Image Gene #38: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NR1H3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0432 (Fisher's exact test), Q value = 0.22

Table S418.  Gene #38: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NR1H3 MUTATED 3 3 2 3 0 1 0 2 0
NR1H3 WILD-TYPE 66 45 37 13 53 19 21 36 50

Figure S166.  Get High-res Image Gene #38: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NR1H3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S419.  Gene #38: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NR1H3 MUTATED 0 0 2 1 2 0
NR1H3 WILD-TYPE 13 16 12 10 9 9
'NR1H3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S420.  Gene #38: 'NR1H3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NR1H3 MUTATED 0 0 0 1 0 1 3 0 0
NR1H3 WILD-TYPE 11 7 7 8 8 6 8 9 5
'ZBTB20 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00195 (Fisher's exact test), Q value = 0.037

Table S421.  Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZBTB20 MUTATED 5 0 0 0 0
ZBTB20 WILD-TYPE 27 18 46 27 23

Figure S167.  Get High-res Image Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00271 (Fisher's exact test), Q value = 0.044

Table S422.  Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZBTB20 MUTATED 5 0 0
ZBTB20 WILD-TYPE 38 67 36

Figure S168.  Get High-res Image Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S423.  Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZBTB20 MUTATED 0 2 17
ZBTB20 WILD-TYPE 42 171 130

Figure S169.  Get High-res Image Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZBTB20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00129 (Fisher's exact test), Q value = 0.029

Table S424.  Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZBTB20 MUTATED 2 1 12
ZBTB20 WILD-TYPE 60 72 63

Figure S170.  Get High-res Image Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZBTB20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00356 (Fisher's exact test), Q value = 0.053

Table S425.  Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZBTB20 MUTATED 1 3 12
ZBTB20 WILD-TYPE 69 117 88

Figure S171.  Get High-res Image Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZBTB20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0234 (Fisher's exact test), Q value = 0.16

Table S426.  Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZBTB20 MUTATED 1 0 0 2 1 8 4 0 0
ZBTB20 WILD-TYPE 40 26 30 27 38 61 16 14 22

Figure S172.  Get High-res Image Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00338 (Fisher's exact test), Q value = 0.051

Table S427.  Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZBTB20 MUTATED 1 10 4 5
ZBTB20 WILD-TYPE 99 62 68 116

Figure S173.  Get High-res Image Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S428.  Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZBTB20 MUTATED 1 2 12 1 4
ZBTB20 WILD-TYPE 58 73 62 118 34

Figure S174.  Get High-res Image Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.018

Table S429.  Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZBTB20 MUTATED 1 12 2 0 5
ZBTB20 WILD-TYPE 50 64 59 71 90

Figure S175.  Get High-res Image Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S430.  Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZBTB20 MUTATED 1 2 1 8 4 0 1 3 0
ZBTB20 WILD-TYPE 68 46 38 8 49 20 20 35 50

Figure S176.  Get High-res Image Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0587 (Fisher's exact test), Q value = 0.26

Table S431.  Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZBTB20 MUTATED 0 0 1 1 3 0
ZBTB20 WILD-TYPE 13 16 13 10 8 9
'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S432.  Gene #39: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZBTB20 MUTATED 0 0 1 1 2 0 1 0 0
ZBTB20 WILD-TYPE 11 7 6 8 6 7 10 9 5
'MPHOSPH10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00455 (Fisher's exact test), Q value = 0.062

Table S433.  Gene #40: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MPHOSPH10 MUTATED 1 3 14
MPHOSPH10 WILD-TYPE 41 170 133

Figure S177.  Get High-res Image Gene #40: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MPHOSPH10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.095

Table S434.  Gene #40: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MPHOSPH10 MUTATED 9 1 6
MPHOSPH10 WILD-TYPE 53 72 69

Figure S178.  Get High-res Image Gene #40: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MPHOSPH10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.2

Table S435.  Gene #40: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MPHOSPH10 MUTATED 1 3 9
MPHOSPH10 WILD-TYPE 69 117 91

Figure S179.  Get High-res Image Gene #40: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MPHOSPH10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.56

Table S436.  Gene #40: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MPHOSPH10 MUTATED 2 0 0 1 1 8 1 0 0
MPHOSPH10 WILD-TYPE 39 26 30 28 38 61 19 14 22
'MPHOSPH10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00544 (Fisher's exact test), Q value = 0.07

Table S437.  Gene #40: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MPHOSPH10 MUTATED 2 6 8 2
MPHOSPH10 WILD-TYPE 98 66 64 119

Figure S180.  Get High-res Image Gene #40: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MPHOSPH10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00418 (Fisher's exact test), Q value = 0.058

Table S438.  Gene #40: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MPHOSPH10 MUTATED 3 3 10 2 0
MPHOSPH10 WILD-TYPE 56 72 64 117 38

Figure S181.  Get High-res Image Gene #40: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MPHOSPH10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00048 (Fisher's exact test), Q value = 0.016

Table S439.  Gene #40: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MPHOSPH10 MUTATED 0 10 5 1 1
MPHOSPH10 WILD-TYPE 51 66 56 70 94

Figure S182.  Get High-res Image Gene #40: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MPHOSPH10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S440.  Gene #40: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MPHOSPH10 MUTATED 3 5 1 2 5 0 0 0 1
MPHOSPH10 WILD-TYPE 66 43 38 14 48 20 21 38 49
'MPHOSPH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S441.  Gene #40: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MPHOSPH10 MUTATED 0 1 1 0 3 2
MPHOSPH10 WILD-TYPE 13 15 13 11 8 7
'MPHOSPH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S442.  Gene #40: 'MPHOSPH10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MPHOSPH10 MUTATED 1 1 0 1 1 2 1 0 0
MPHOSPH10 WILD-TYPE 10 6 7 8 7 5 10 9 5
'TPRKB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S443.  Gene #41: 'TPRKB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TPRKB MUTATED 1 2 7
TPRKB WILD-TYPE 41 171 140
'TPRKB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S444.  Gene #41: 'TPRKB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TPRKB MUTATED 4 1 5
TPRKB WILD-TYPE 58 72 70
'TPRKB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S445.  Gene #41: 'TPRKB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TPRKB MUTATED 1 3 4
TPRKB WILD-TYPE 69 117 96
'TPRKB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S446.  Gene #41: 'TPRKB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TPRKB MUTATED 1 0 0 3 1 3 0 0 0
TPRKB WILD-TYPE 40 26 30 26 38 66 20 14 22
'TPRKB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.1

Table S447.  Gene #41: 'TPRKB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TPRKB MUTATED 2 3 5 0
TPRKB WILD-TYPE 98 69 67 121

Figure S183.  Get High-res Image Gene #41: 'TPRKB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TPRKB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00873 (Fisher's exact test), Q value = 0.088

Table S448.  Gene #41: 'TPRKB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TPRKB MUTATED 2 2 6 0 0
TPRKB WILD-TYPE 57 73 68 119 38

Figure S184.  Get High-res Image Gene #41: 'TPRKB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TPRKB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 0.24

Table S449.  Gene #41: 'TPRKB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TPRKB MUTATED 1 4 4 1 0
TPRKB WILD-TYPE 50 72 57 70 95

Figure S185.  Get High-res Image Gene #41: 'TPRKB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TPRKB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.14

Table S450.  Gene #41: 'TPRKB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TPRKB MUTATED 1 6 1 1 1 0 0 0 0
TPRKB WILD-TYPE 68 42 38 15 52 20 21 38 50

Figure S186.  Get High-res Image Gene #41: 'TPRKB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PLAGL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.19

Table S451.  Gene #42: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PLAGL2 MUTATED 1 0 5
PLAGL2 WILD-TYPE 41 173 142

Figure S187.  Get High-res Image Gene #42: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PLAGL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.19

Table S452.  Gene #42: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PLAGL2 MUTATED 1 0 5
PLAGL2 WILD-TYPE 61 73 70

Figure S188.  Get High-res Image Gene #42: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PLAGL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S453.  Gene #42: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PLAGL2 MUTATED 1 3 2
PLAGL2 WILD-TYPE 69 117 98
'PLAGL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S454.  Gene #42: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PLAGL2 MUTATED 0 0 0 2 1 2 1 0 0
PLAGL2 WILD-TYPE 41 26 30 27 38 67 19 14 22
'PLAGL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S455.  Gene #42: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PLAGL2 MUTATED 0 6 0 0
PLAGL2 WILD-TYPE 100 66 72 121

Figure S189.  Get High-res Image Gene #42: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PLAGL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.0087

Table S456.  Gene #42: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PLAGL2 MUTATED 0 0 6 0 0
PLAGL2 WILD-TYPE 59 75 68 119 38

Figure S190.  Get High-res Image Gene #42: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00045 (Fisher's exact test), Q value = 0.015

Table S457.  Gene #42: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PLAGL2 MUTATED 0 6 0 0 0
PLAGL2 WILD-TYPE 51 70 61 71 95

Figure S191.  Get High-res Image Gene #42: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0628 (Fisher's exact test), Q value = 0.27

Table S458.  Gene #42: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PLAGL2 MUTATED 3 0 0 2 1 0 0 0 0
PLAGL2 WILD-TYPE 66 48 39 14 52 20 21 38 50
'IDH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0535 (Fisher's exact test), Q value = 0.25

Table S459.  Gene #43: 'IDH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IDH1 MUTATED 3 0 0 0 0
IDH1 WILD-TYPE 29 18 46 27 23
'IDH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S460.  Gene #43: 'IDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IDH1 MUTATED 3 0 0
IDH1 WILD-TYPE 40 67 36

Figure S192.  Get High-res Image Gene #43: 'IDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0583 (Fisher's exact test), Q value = 0.26

Table S461.  Gene #43: 'IDH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IDH1 MUTATED 3 4 11
IDH1 WILD-TYPE 39 169 136
'IDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S462.  Gene #43: 'IDH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IDH1 MUTATED 5 4 6
IDH1 WILD-TYPE 57 69 69
'IDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S463.  Gene #43: 'IDH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IDH1 MUTATED 4 6 7
IDH1 WILD-TYPE 66 114 93
'IDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S464.  Gene #43: 'IDH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IDH1 MUTATED 5 3 0 1 1 3 0 2 2
IDH1 WILD-TYPE 36 23 30 28 38 66 20 12 20
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.19

Table S465.  Gene #43: 'IDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IDH1 MUTATED 2 6 7 3
IDH1 WILD-TYPE 98 66 65 118

Figure S193.  Get High-res Image Gene #43: 'IDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00424 (Fisher's exact test), Q value = 0.059

Table S466.  Gene #43: 'IDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IDH1 MUTATED 5 4 6 0 3
IDH1 WILD-TYPE 54 71 68 119 35

Figure S194.  Get High-res Image Gene #43: 'IDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S467.  Gene #43: 'IDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IDH1 MUTATED 2 8 3 2 3
IDH1 WILD-TYPE 49 68 58 69 92
'IDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S468.  Gene #43: 'IDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IDH1 MUTATED 5 4 2 3 1 0 1 2 0
IDH1 WILD-TYPE 64 44 37 13 52 20 20 36 50
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S469.  Gene #43: 'IDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IDH1 MUTATED 1 2 1 3 2 0
IDH1 WILD-TYPE 12 14 13 8 9 9
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.94

Table S470.  Gene #43: 'IDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IDH1 MUTATED 2 0 2 2 0 0 2 1 0
IDH1 WILD-TYPE 9 7 5 7 8 7 9 8 5
'SETD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00838 (Fisher's exact test), Q value = 0.086

Table S471.  Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SETD2 MUTATED 6 0 0 2 1
SETD2 WILD-TYPE 26 18 46 25 22

Figure S195.  Get High-res Image Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SETD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0531 (Fisher's exact test), Q value = 0.25

Table S472.  Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SETD2 MUTATED 6 2 1
SETD2 WILD-TYPE 37 65 35
'SETD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S473.  Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SETD2 MUTATED 0 10 31
SETD2 WILD-TYPE 42 163 116

Figure S196.  Get High-res Image Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SETD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00104 (Fisher's exact test), Q value = 0.025

Table S474.  Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SETD2 MUTATED 10 3 19
SETD2 WILD-TYPE 52 70 56

Figure S197.  Get High-res Image Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SETD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S475.  Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SETD2 MUTATED 6 14 13
SETD2 WILD-TYPE 64 106 87
'SETD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.9

Table S476.  Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SETD2 MUTATED 3 3 1 3 3 11 4 2 3
SETD2 WILD-TYPE 38 23 29 26 36 58 16 12 19
'SETD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S477.  Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SETD2 MUTATED 6 20 9 6
SETD2 WILD-TYPE 94 52 63 115

Figure S198.  Get High-res Image Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SETD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S478.  Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SETD2 MUTATED 9 6 17 3 6
SETD2 WILD-TYPE 50 69 57 116 32

Figure S199.  Get High-res Image Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SETD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00247 (Fisher's exact test), Q value = 0.042

Table S479.  Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SETD2 MUTATED 6 18 6 3 6
SETD2 WILD-TYPE 45 58 55 68 89

Figure S200.  Get High-res Image Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SETD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00053 (Fisher's exact test), Q value = 0.017

Table S480.  Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SETD2 MUTATED 9 7 2 8 7 0 0 4 2
SETD2 WILD-TYPE 60 41 37 8 46 20 21 34 48

Figure S201.  Get High-res Image Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SETD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S481.  Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SETD2 MUTATED 1 2 2 0 3 1
SETD2 WILD-TYPE 12 14 12 11 8 8
'SETD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S482.  Gene #44: 'SETD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SETD2 MUTATED 1 2 1 2 2 0 1 0 0
SETD2 WILD-TYPE 10 5 6 7 6 7 10 9 5
'GPATCH8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.25

Table S483.  Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GPATCH8 MUTATED 3 0 0 0 0
GPATCH8 WILD-TYPE 29 18 46 27 23
'GPATCH8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 0.21

Table S484.  Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GPATCH8 MUTATED 3 0 0
GPATCH8 WILD-TYPE 40 67 36

Figure S202.  Get High-res Image Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPATCH8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00205 (Fisher's exact test), Q value = 0.038

Table S485.  Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GPATCH8 MUTATED 2 1 11
GPATCH8 WILD-TYPE 40 172 136

Figure S203.  Get High-res Image Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPATCH8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.14

Table S486.  Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GPATCH8 MUTATED 4 0 7
GPATCH8 WILD-TYPE 58 73 68

Figure S204.  Get High-res Image Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GPATCH8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S487.  Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GPATCH8 MUTATED 2 2 9
GPATCH8 WILD-TYPE 68 118 91

Figure S205.  Get High-res Image Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GPATCH8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.77

Table S488.  Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GPATCH8 MUTATED 3 0 0 1 3 6 0 0 0
GPATCH8 WILD-TYPE 38 26 30 28 36 63 20 14 22
'GPATCH8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00596 (Fisher's exact test), Q value = 0.073

Table S489.  Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GPATCH8 MUTATED 0 6 5 3
GPATCH8 WILD-TYPE 100 66 67 118

Figure S206.  Get High-res Image Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GPATCH8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00042 (Fisher's exact test), Q value = 0.014

Table S490.  Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GPATCH8 MUTATED 2 1 8 0 3
GPATCH8 WILD-TYPE 57 74 66 119 35

Figure S207.  Get High-res Image Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0528 (Fisher's exact test), Q value = 0.25

Table S491.  Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GPATCH8 MUTATED 1 8 1 1 3
GPATCH8 WILD-TYPE 50 68 60 70 92
'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S492.  Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GPATCH8 MUTATED 5 3 0 2 1 0 0 2 1
GPATCH8 WILD-TYPE 64 45 39 14 52 20 21 36 49
'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 0.25

Table S493.  Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GPATCH8 MUTATED 0 1 0 0 3 1
GPATCH8 WILD-TYPE 13 15 14 11 8 8
'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S494.  Gene #45: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GPATCH8 MUTATED 1 0 0 2 0 1 1 0 0
GPATCH8 WILD-TYPE 10 7 7 7 8 6 10 9 5
'ALPK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S495.  Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ALPK2 MUTATED 4 0 1 2 0
ALPK2 WILD-TYPE 28 18 45 25 23
'ALPK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S496.  Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ALPK2 MUTATED 4 2 1
ALPK2 WILD-TYPE 39 65 35
'ALPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00039 (Fisher's exact test), Q value = 0.014

Table S497.  Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ALPK2 MUTATED 2 11 29
ALPK2 WILD-TYPE 40 162 118

Figure S208.  Get High-res Image Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ALPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.57

Table S498.  Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ALPK2 MUTATED 12 8 15
ALPK2 WILD-TYPE 50 65 60
'ALPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0775 (Fisher's exact test), Q value = 0.3

Table S499.  Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ALPK2 MUTATED 4 15 17
ALPK2 WILD-TYPE 66 105 83
'ALPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0168 (Fisher's exact test), Q value = 0.13

Table S500.  Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ALPK2 MUTATED 2 1 1 4 3 13 6 4 2
ALPK2 WILD-TYPE 39 25 29 25 36 56 14 10 20

Figure S209.  Get High-res Image Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.013

Table S501.  Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ALPK2 MUTATED 8 19 8 7
ALPK2 WILD-TYPE 92 53 64 114

Figure S210.  Get High-res Image Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S502.  Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ALPK2 MUTATED 5 8 21 4 4
ALPK2 WILD-TYPE 54 67 53 115 34

Figure S211.  Get High-res Image Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S503.  Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ALPK2 MUTATED 9 20 4 2 6
ALPK2 WILD-TYPE 42 56 57 69 89

Figure S212.  Get High-res Image Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S504.  Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ALPK2 MUTATED 6 8 2 9 6 4 0 5 1
ALPK2 WILD-TYPE 63 40 37 7 47 16 21 33 49

Figure S213.  Get High-res Image Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S505.  Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ALPK2 MUTATED 1 2 1 0 4 0
ALPK2 WILD-TYPE 12 14 13 11 7 9
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.63

Table S506.  Gene #46: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ALPK2 MUTATED 0 1 0 3 1 1 2 0 0
ALPK2 WILD-TYPE 11 6 7 6 7 6 9 9 5
'C11ORF30 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00153 (Fisher's exact test), Q value = 0.032

Table S507.  Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C11ORF30 MUTATED 6 0 0 1 0
C11ORF30 WILD-TYPE 26 18 46 26 23

Figure S214.  Get High-res Image Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C11ORF30 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00183 (Fisher's exact test), Q value = 0.036

Table S508.  Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C11ORF30 MUTATED 6 0 1
C11ORF30 WILD-TYPE 37 67 35

Figure S215.  Get High-res Image Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'C11ORF30 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0048

Table S509.  Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C11ORF30 MUTATED 1 2 18
C11ORF30 WILD-TYPE 41 171 129

Figure S216.  Get High-res Image Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C11ORF30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S510.  Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C11ORF30 MUTATED 5 2 7
C11ORF30 WILD-TYPE 57 71 68
'C11ORF30 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00497 (Fisher's exact test), Q value = 0.066

Table S511.  Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C11ORF30 MUTATED 0 5 11
C11ORF30 WILD-TYPE 70 115 89

Figure S217.  Get High-res Image Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C11ORF30 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S512.  Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C11ORF30 MUTATED 1 1 0 2 1 9 1 1 0
C11ORF30 WILD-TYPE 40 25 30 27 38 60 19 13 22
'C11ORF30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S513.  Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C11ORF30 MUTATED 2 7 5 7
C11ORF30 WILD-TYPE 98 65 67 114
'C11ORF30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0254 (Fisher's exact test), Q value = 0.17

Table S514.  Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C11ORF30 MUTATED 2 5 7 2 5
C11ORF30 WILD-TYPE 57 70 67 117 33

Figure S218.  Get High-res Image Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C11ORF30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S515.  Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C11ORF30 MUTATED 2 7 3 2 6
C11ORF30 WILD-TYPE 49 69 58 69 89
'C11ORF30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S516.  Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C11ORF30 MUTATED 3 3 2 1 4 1 2 3 1
C11ORF30 WILD-TYPE 66 45 37 15 49 19 19 35 49
'C11ORF30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S517.  Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C11ORF30 MUTATED 0 1 1 0 1 0
C11ORF30 WILD-TYPE 13 15 13 11 10 9
'C11ORF30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S518.  Gene #47: 'C11ORF30 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C11ORF30 MUTATED 0 1 0 1 0 0 0 0 1
C11ORF30 WILD-TYPE 11 6 7 8 8 7 11 9 4
'RPTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.78

Table S519.  Gene #48: 'RPTN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RPTN MUTATED 2 4 7
RPTN WILD-TYPE 40 169 140
'RPTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.94

Table S520.  Gene #48: 'RPTN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RPTN MUTATED 5 3 5
RPTN WILD-TYPE 57 70 70
'RPTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.79

Table S521.  Gene #48: 'RPTN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RPTN MUTATED 3 3 6
RPTN WILD-TYPE 67 117 94
'RPTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S522.  Gene #48: 'RPTN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RPTN MUTATED 3 0 1 1 2 3 0 2 0
RPTN WILD-TYPE 38 26 29 28 37 66 20 12 22
'RPTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00481 (Fisher's exact test), Q value = 0.064

Table S523.  Gene #48: 'RPTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RPTN MUTATED 3 4 6 0
RPTN WILD-TYPE 97 68 66 121

Figure S219.  Get High-res Image Gene #48: 'RPTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RPTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00166 (Fisher's exact test), Q value = 0.034

Table S524.  Gene #48: 'RPTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RPTN MUTATED 4 2 7 0 0
RPTN WILD-TYPE 55 73 67 119 38

Figure S220.  Get High-res Image Gene #48: 'RPTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RPTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.017

Table S525.  Gene #48: 'RPTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RPTN MUTATED 1 7 5 0 0
RPTN WILD-TYPE 50 69 56 71 95

Figure S221.  Get High-res Image Gene #48: 'RPTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RPTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0573 (Fisher's exact test), Q value = 0.26

Table S526.  Gene #48: 'RPTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RPTN MUTATED 3 5 2 2 1 0 0 0 0
RPTN WILD-TYPE 66 43 37 14 52 20 21 38 50
'RPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S527.  Gene #48: 'RPTN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RPTN MUTATED 0 0 1 0 1 2
RPTN WILD-TYPE 13 16 13 11 10 7
'RPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.95

Table S528.  Gene #48: 'RPTN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RPTN MUTATED 1 0 0 0 0 1 2 0 0
RPTN WILD-TYPE 10 7 7 9 8 6 9 9 5
'ROS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S529.  Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ROS1 MUTATED 6 0 1 3 0
ROS1 WILD-TYPE 26 18 45 24 23

Figure S222.  Get High-res Image Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ROS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0185 (Fisher's exact test), Q value = 0.14

Table S530.  Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ROS1 MUTATED 7 2 1
ROS1 WILD-TYPE 36 65 35

Figure S223.  Get High-res Image Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ROS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0098

Table S531.  Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ROS1 MUTATED 4 11 32
ROS1 WILD-TYPE 38 162 115

Figure S224.  Get High-res Image Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ROS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.18

Table S532.  Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ROS1 MUTATED 15 6 15
ROS1 WILD-TYPE 47 67 60

Figure S225.  Get High-res Image Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ROS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00325 (Fisher's exact test), Q value = 0.05

Table S533.  Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ROS1 MUTATED 3 13 21
ROS1 WILD-TYPE 67 107 79

Figure S226.  Get High-res Image Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ROS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0288 (Fisher's exact test), Q value = 0.18

Table S534.  Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ROS1 MUTATED 3 2 4 2 2 19 1 1 3
ROS1 WILD-TYPE 38 24 26 27 37 50 19 13 19

Figure S227.  Get High-res Image Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ROS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.058 (Fisher's exact test), Q value = 0.26

Table S535.  Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ROS1 MUTATED 8 13 14 12
ROS1 WILD-TYPE 92 59 58 109
'ROS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S536.  Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ROS1 MUTATED 4 11 20 5 7
ROS1 WILD-TYPE 55 64 54 114 31

Figure S228.  Get High-res Image Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ROS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0093

Table S537.  Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ROS1 MUTATED 7 21 6 2 10
ROS1 WILD-TYPE 44 55 55 69 85

Figure S229.  Get High-res Image Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ROS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S538.  Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ROS1 MUTATED 10 9 3 7 5 3 1 6 2
ROS1 WILD-TYPE 59 39 36 9 48 17 20 32 48

Figure S230.  Get High-res Image Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ROS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.19

Table S539.  Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ROS1 MUTATED 2 4 1 0 5 0
ROS1 WILD-TYPE 11 12 13 11 6 9

Figure S231.  Get High-res Image Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ROS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S540.  Gene #49: 'ROS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ROS1 MUTATED 2 1 0 1 2 2 2 1 1
ROS1 WILD-TYPE 9 6 7 8 6 5 9 8 4
'EGR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00354 (Fisher's exact test), Q value = 0.053

Table S541.  Gene #50: 'EGR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EGR1 MUTATED 1 0 8
EGR1 WILD-TYPE 41 173 139

Figure S232.  Get High-res Image Gene #50: 'EGR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EGR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0504 (Fisher's exact test), Q value = 0.24

Table S542.  Gene #50: 'EGR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EGR1 MUTATED 2 0 5
EGR1 WILD-TYPE 60 73 70
'EGR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S543.  Gene #50: 'EGR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EGR1 MUTATED 0 2 4
EGR1 WILD-TYPE 70 118 96
'EGR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S544.  Gene #50: 'EGR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EGR1 MUTATED 0 0 0 2 0 4 0 0 0
EGR1 WILD-TYPE 41 26 30 27 39 65 20 14 22
'EGR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00527 (Fisher's exact test), Q value = 0.068

Table S545.  Gene #50: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EGR1 MUTATED 0 6 1 2
EGR1 WILD-TYPE 100 66 71 119

Figure S233.  Get High-res Image Gene #50: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EGR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0016 (Fisher's exact test), Q value = 0.033

Table S546.  Gene #50: 'EGR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EGR1 MUTATED 0 1 6 0 2
EGR1 WILD-TYPE 59 74 68 119 36

Figure S234.  Get High-res Image Gene #50: 'EGR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EGR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.003 (Fisher's exact test), Q value = 0.048

Table S547.  Gene #50: 'EGR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EGR1 MUTATED 0 7 1 0 1
EGR1 WILD-TYPE 51 69 60 71 94

Figure S235.  Get High-res Image Gene #50: 'EGR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EGR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0081

Table S548.  Gene #50: 'EGR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EGR1 MUTATED 2 0 0 4 1 0 2 0 0
EGR1 WILD-TYPE 67 48 39 12 52 20 19 38 50

Figure S236.  Get High-res Image Gene #50: 'EGR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S549.  Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PTEN MUTATED 4 0 1 2 1
PTEN WILD-TYPE 28 18 45 25 22
'PTEN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S550.  Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PTEN MUTATED 5 2 1
PTEN WILD-TYPE 38 65 35
'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S551.  Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTEN MUTATED 16 66 70
PTEN WILD-TYPE 26 107 77
'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S552.  Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTEN MUTATED 38 54 54
PTEN WILD-TYPE 24 19 21
'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00116 (Fisher's exact test), Q value = 0.027

Table S553.  Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTEN MUTATED 21 55 58
PTEN WILD-TYPE 49 65 42

Figure S237.  Get High-res Image Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00022 (Fisher's exact test), Q value = 0.0096

Table S554.  Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTEN MUTATED 20 11 6 19 8 38 11 8 13
PTEN WILD-TYPE 21 15 24 10 31 31 9 6 9

Figure S238.  Get High-res Image Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S555.  Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTEN MUTATED 51 48 45 9
PTEN WILD-TYPE 49 24 27 112

Figure S239.  Get High-res Image Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S556.  Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTEN MUTATED 40 50 53 5 5
PTEN WILD-TYPE 19 25 21 114 33

Figure S240.  Get High-res Image Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S557.  Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTEN MUTATED 36 55 32 20 10
PTEN WILD-TYPE 15 21 29 51 85

Figure S241.  Get High-res Image Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S558.  Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTEN MUTATED 43 36 15 15 18 15 1 6 4
PTEN WILD-TYPE 26 12 24 1 35 5 20 32 46

Figure S242.  Get High-res Image Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.76

Table S559.  Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PTEN MUTATED 9 10 7 8 8 3
PTEN WILD-TYPE 4 6 7 3 3 6
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S560.  Gene #51: 'PTEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PTEN MUTATED 6 6 4 7 3 2 8 6 3
PTEN WILD-TYPE 5 1 3 2 5 5 3 3 2
'CTNNB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 0.3

Table S561.  Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CTNNB1 MUTATED 0 1 1 4 1
CTNNB1 WILD-TYPE 32 17 45 23 22
'CTNNB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S562.  Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CTNNB1 MUTATED 1 5 1
CTNNB1 WILD-TYPE 42 62 35
'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.88

Table S563.  Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CTNNB1 MUTATED 7 33 34
CTNNB1 WILD-TYPE 35 140 113
'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S564.  Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CTNNB1 MUTATED 23 21 23
CTNNB1 WILD-TYPE 39 52 52
'CTNNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00173 (Fisher's exact test), Q value = 0.035

Table S565.  Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CTNNB1 MUTATED 8 24 34
CTNNB1 WILD-TYPE 62 96 66

Figure S243.  Get High-res Image Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CTNNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.15

Table S566.  Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CTNNB1 MUTATED 7 2 4 8 5 25 5 2 8
CTNNB1 WILD-TYPE 34 24 26 21 34 44 15 12 14

Figure S244.  Get High-res Image Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S567.  Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CTNNB1 MUTATED 25 22 20 7
CTNNB1 WILD-TYPE 75 50 52 114

Figure S245.  Get High-res Image Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S568.  Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CTNNB1 MUTATED 17 23 25 8 1
CTNNB1 WILD-TYPE 42 52 49 111 37

Figure S246.  Get High-res Image Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S569.  Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CTNNB1 MUTATED 13 31 13 9 6
CTNNB1 WILD-TYPE 38 45 48 62 89

Figure S247.  Get High-res Image Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S570.  Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CTNNB1 MUTATED 22 13 10 9 10 4 0 1 3
CTNNB1 WILD-TYPE 47 35 29 7 43 16 21 37 47

Figure S248.  Get High-res Image Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.58

Table S571.  Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CTNNB1 MUTATED 1 2 4 2 4 4
CTNNB1 WILD-TYPE 12 14 10 9 7 5
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S572.  Gene #52: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CTNNB1 MUTATED 4 1 1 1 2 0 5 3 0
CTNNB1 WILD-TYPE 7 6 6 8 6 7 6 6 5
'RBM44 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 0.3

Table S573.  Gene #53: 'RBM44 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RBM44 MUTATED 3 0 0 2 0
RBM44 WILD-TYPE 29 18 46 25 23
'RBM44 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S574.  Gene #53: 'RBM44 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RBM44 MUTATED 3 1 1
RBM44 WILD-TYPE 40 66 35
'RBM44 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0075

Table S575.  Gene #53: 'RBM44 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RBM44 MUTATED 1 0 12
RBM44 WILD-TYPE 41 173 135

Figure S249.  Get High-res Image Gene #53: 'RBM44 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBM44 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0348 (Fisher's exact test), Q value = 0.2

Table S576.  Gene #53: 'RBM44 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RBM44 MUTATED 5 0 3
RBM44 WILD-TYPE 57 73 72

Figure S250.  Get High-res Image Gene #53: 'RBM44 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RBM44 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S577.  Gene #53: 'RBM44 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RBM44 MUTATED 1 4 7
RBM44 WILD-TYPE 69 116 93
'RBM44 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S578.  Gene #53: 'RBM44 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RBM44 MUTATED 1 2 1 0 1 6 0 1 0
RBM44 WILD-TYPE 40 24 29 29 38 63 20 13 22
'RBM44 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0615 (Fisher's exact test), Q value = 0.27

Table S579.  Gene #53: 'RBM44 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RBM44 MUTATED 0 4 3 6
RBM44 WILD-TYPE 100 68 69 115
'RBM44 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S580.  Gene #53: 'RBM44 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RBM44 MUTATED 1 0 5 5 2
RBM44 WILD-TYPE 58 75 69 114 36
'RBM44 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.94

Table S581.  Gene #53: 'RBM44 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RBM44 MUTATED 0 3 3 2 4
RBM44 WILD-TYPE 51 73 58 69 91
'RBM44 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S582.  Gene #53: 'RBM44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RBM44 MUTATED 2 2 0 2 2 1 1 1 1
RBM44 WILD-TYPE 67 46 39 14 51 19 20 37 49
'RBM44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S583.  Gene #53: 'RBM44 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RBM44 MUTATED 0 0 1 0 2 0
RBM44 WILD-TYPE 13 16 13 11 9 9
'RBM44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S584.  Gene #53: 'RBM44 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RBM44 MUTATED 0 0 0 1 1 1 0 0 0
RBM44 WILD-TYPE 11 7 7 8 7 6 11 9 5
'ECT2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S585.  Gene #54: 'ECT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ECT2 MUTATED 4 0 0 1 0
ECT2 WILD-TYPE 28 18 46 26 23

Figure S251.  Get High-res Image Gene #54: 'ECT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ECT2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.28

Table S586.  Gene #54: 'ECT2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ECT2 MUTATED 4 1 0
ECT2 WILD-TYPE 39 66 36
'ECT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0496 (Fisher's exact test), Q value = 0.24

Table S587.  Gene #54: 'ECT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ECT2 MUTATED 0 6 12
ECT2 WILD-TYPE 42 167 135

Figure S252.  Get High-res Image Gene #54: 'ECT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ECT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S588.  Gene #54: 'ECT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ECT2 MUTATED 5 4 4
ECT2 WILD-TYPE 57 69 71
'ECT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0821 (Fisher's exact test), Q value = 0.31

Table S589.  Gene #54: 'ECT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ECT2 MUTATED 1 5 9
ECT2 WILD-TYPE 69 115 91
'ECT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S590.  Gene #54: 'ECT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ECT2 MUTATED 2 0 1 2 2 5 2 1 0
ECT2 WILD-TYPE 39 26 29 27 37 64 18 13 22
'ECT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S591.  Gene #54: 'ECT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ECT2 MUTATED 3 6 4 5
ECT2 WILD-TYPE 97 66 68 116
'ECT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00201 (Fisher's exact test), Q value = 0.038

Table S592.  Gene #54: 'ECT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ECT2 MUTATED 4 1 8 1 4
ECT2 WILD-TYPE 55 74 66 118 34

Figure S253.  Get High-res Image Gene #54: 'ECT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ECT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S593.  Gene #54: 'ECT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ECT2 MUTATED 1 8 3 1 4
ECT2 WILD-TYPE 50 68 58 70 91
'ECT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0579 (Fisher's exact test), Q value = 0.26

Table S594.  Gene #54: 'ECT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ECT2 MUTATED 6 4 0 2 1 1 0 3 0
ECT2 WILD-TYPE 63 44 39 14 52 19 21 35 50
'ECT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.95

Table S595.  Gene #54: 'ECT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ECT2 MUTATED 0 1 1 1 2 0
ECT2 WILD-TYPE 13 15 13 10 9 9
'ECT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S596.  Gene #54: 'ECT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ECT2 MUTATED 1 0 1 1 0 1 1 0 0
ECT2 WILD-TYPE 10 7 6 8 8 6 10 9 5
'DDX26B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0081

Table S597.  Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DDX26B MUTATED 0 1 14
DDX26B WILD-TYPE 42 172 133

Figure S254.  Get High-res Image Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DDX26B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00529 (Fisher's exact test), Q value = 0.068

Table S598.  Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DDX26B MUTATED 5 0 9
DDX26B WILD-TYPE 57 73 66

Figure S255.  Get High-res Image Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DDX26B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S599.  Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DDX26B MUTATED 2 2 10
DDX26B WILD-TYPE 68 118 90

Figure S256.  Get High-res Image Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DDX26B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0525 (Fisher's exact test), Q value = 0.25

Table S600.  Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DDX26B MUTATED 1 0 0 2 1 6 4 0 0
DDX26B WILD-TYPE 40 26 30 27 38 63 16 14 22
'DDX26B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S601.  Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DDX26B MUTATED 0 7 7 1
DDX26B WILD-TYPE 100 65 65 120

Figure S257.  Get High-res Image Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DDX26B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S602.  Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DDX26B MUTATED 2 1 11 0 1
DDX26B WILD-TYPE 57 74 63 119 37

Figure S258.  Get High-res Image Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DDX26B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S603.  Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DDX26B MUTATED 0 13 1 0 1
DDX26B WILD-TYPE 51 63 60 71 94

Figure S259.  Get High-res Image Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DDX26B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00083 (Fisher's exact test), Q value = 0.022

Table S604.  Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DDX26B MUTATED 3 6 0 4 1 0 0 1 0
DDX26B WILD-TYPE 66 42 39 12 52 20 21 37 50

Figure S260.  Get High-res Image Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DDX26B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S605.  Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DDX26B MUTATED 0 0 1 1 2 0
DDX26B WILD-TYPE 13 16 13 10 9 9
'DDX26B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.78

Table S606.  Gene #55: 'DDX26B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DDX26B MUTATED 0 0 0 0 1 1 2 0 0
DDX26B WILD-TYPE 11 7 7 9 7 6 9 9 5
'UBQLN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00044 (Fisher's exact test), Q value = 0.015

Table S607.  Gene #56: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UBQLN2 MUTATED 0 0 10
UBQLN2 WILD-TYPE 42 173 137

Figure S261.  Get High-res Image Gene #56: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UBQLN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.067 (Fisher's exact test), Q value = 0.28

Table S608.  Gene #56: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UBQLN2 MUTATED 3 0 5
UBQLN2 WILD-TYPE 59 73 70
'UBQLN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0401 (Fisher's exact test), Q value = 0.21

Table S609.  Gene #56: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UBQLN2 MUTATED 0 3 7
UBQLN2 WILD-TYPE 70 117 93

Figure S262.  Get High-res Image Gene #56: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'UBQLN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0725 (Fisher's exact test), Q value = 0.29

Table S610.  Gene #56: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UBQLN2 MUTATED 0 1 0 2 0 7 0 0 0
UBQLN2 WILD-TYPE 41 25 30 27 39 62 20 14 22
'UBQLN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00679 (Fisher's exact test), Q value = 0.077

Table S611.  Gene #56: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UBQLN2 MUTATED 0 6 2 2
UBQLN2 WILD-TYPE 100 66 70 119

Figure S263.  Get High-res Image Gene #56: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'UBQLN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00377 (Fisher's exact test), Q value = 0.055

Table S612.  Gene #56: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UBQLN2 MUTATED 1 0 7 1 1
UBQLN2 WILD-TYPE 58 75 67 118 37

Figure S264.  Get High-res Image Gene #56: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00286 (Fisher's exact test), Q value = 0.046

Table S613.  Gene #56: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UBQLN2 MUTATED 0 7 1 0 1
UBQLN2 WILD-TYPE 51 69 60 71 94

Figure S265.  Get High-res Image Gene #56: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00797 (Fisher's exact test), Q value = 0.084

Table S614.  Gene #56: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UBQLN2 MUTATED 3 2 0 3 0 0 1 0 0
UBQLN2 WILD-TYPE 66 46 39 13 53 20 20 38 50

Figure S266.  Get High-res Image Gene #56: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'THOC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S615.  Gene #57: 'THOC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
THOC7 MUTATED 1 6 3
THOC7 WILD-TYPE 41 167 144
'THOC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S616.  Gene #57: 'THOC7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
THOC7 MUTATED 4 3 2
THOC7 WILD-TYPE 58 70 73
'THOC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S617.  Gene #57: 'THOC7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
THOC7 MUTATED 1 5 4
THOC7 WILD-TYPE 69 115 96
'THOC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S618.  Gene #57: 'THOC7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
THOC7 MUTATED 1 2 1 2 0 3 0 0 1
THOC7 WILD-TYPE 40 24 29 27 39 66 20 14 21
'THOC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.57

Table S619.  Gene #57: 'THOC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
THOC7 MUTATED 3 2 4 1
THOC7 WILD-TYPE 97 70 68 120
'THOC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0304 (Fisher's exact test), Q value = 0.18

Table S620.  Gene #57: 'THOC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
THOC7 MUTATED 4 4 0 1 1
THOC7 WILD-TYPE 55 71 74 118 37

Figure S267.  Get High-res Image Gene #57: 'THOC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'THOC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00272 (Fisher's exact test), Q value = 0.044

Table S621.  Gene #57: 'THOC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
THOC7 MUTATED 4 0 4 0 1
THOC7 WILD-TYPE 47 76 57 71 94

Figure S268.  Get High-res Image Gene #57: 'THOC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'THOC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S622.  Gene #57: 'THOC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
THOC7 MUTATED 1 3 1 0 1 2 0 1 0
THOC7 WILD-TYPE 68 45 38 16 52 18 21 37 50
'THOC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S623.  Gene #57: 'THOC7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
THOC7 MUTATED 1 3 1 0 0 0
THOC7 WILD-TYPE 12 13 13 11 11 9
'THOC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S624.  Gene #57: 'THOC7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
THOC7 MUTATED 1 2 0 0 0 1 0 0 1
THOC7 WILD-TYPE 10 5 7 9 8 6 11 9 4
'TOP2B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S625.  Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TOP2B MUTATED 1 0 0 2 1
TOP2B WILD-TYPE 31 18 46 25 22
'TOP2B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S626.  Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TOP2B MUTATED 2 1 1
TOP2B WILD-TYPE 41 66 35
'TOP2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00721 (Fisher's exact test), Q value = 0.08

Table S627.  Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TOP2B MUTATED 3 4 15
TOP2B WILD-TYPE 39 169 132

Figure S269.  Get High-res Image Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TOP2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.96

Table S628.  Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TOP2B MUTATED 6 4 7
TOP2B WILD-TYPE 56 69 68
'TOP2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0901 (Fisher's exact test), Q value = 0.33

Table S629.  Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TOP2B MUTATED 1 10 9
TOP2B WILD-TYPE 69 110 91
'TOP2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S630.  Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TOP2B MUTATED 0 2 3 4 1 5 3 1 1
TOP2B WILD-TYPE 41 24 27 25 38 64 17 13 21
'TOP2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.22

Table S631.  Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TOP2B MUTATED 3 10 3 7
TOP2B WILD-TYPE 97 62 69 114

Figure S270.  Get High-res Image Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TOP2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0232 (Fisher's exact test), Q value = 0.16

Table S632.  Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TOP2B MUTATED 2 4 10 3 4
TOP2B WILD-TYPE 57 71 64 116 34

Figure S271.  Get High-res Image Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TOP2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S633.  Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TOP2B MUTATED 2 11 1 2 7
TOP2B WILD-TYPE 49 65 60 69 88

Figure S272.  Get High-res Image Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TOP2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0196 (Fisher's exact test), Q value = 0.14

Table S634.  Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TOP2B MUTATED 4 3 2 4 0 3 0 4 3
TOP2B WILD-TYPE 65 45 37 12 53 17 21 34 47

Figure S273.  Get High-res Image Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TOP2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S635.  Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TOP2B MUTATED 0 0 2 1 2 0
TOP2B WILD-TYPE 13 16 12 10 9 9
'TOP2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S636.  Gene #58: 'TOP2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TOP2B MUTATED 0 0 0 2 0 0 2 0 1
TOP2B WILD-TYPE 11 7 7 7 8 7 9 9 4
'RB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S637.  Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RB1 MUTATED 2 0 1 1 0
RB1 WILD-TYPE 30 18 45 26 23
'RB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S638.  Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RB1 MUTATED 2 1 1
RB1 WILD-TYPE 41 66 35
'RB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 0.21

Table S639.  Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RB1 MUTATED 11 32 45
RB1 WILD-TYPE 31 141 102

Figure S274.  Get High-res Image Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S640.  Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RB1 MUTATED 23 24 37
RB1 WILD-TYPE 39 49 38
'RB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.25

Table S641.  Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RB1 MUTATED 13 30 35
RB1 WILD-TYPE 57 90 65
'RB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.6

Table S642.  Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RB1 MUTATED 10 5 3 9 9 22 8 5 7
RB1 WILD-TYPE 31 21 27 20 30 47 12 9 15
'RB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S643.  Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RB1 MUTATED 23 32 26 7
RB1 WILD-TYPE 77 40 46 114

Figure S275.  Get High-res Image Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S644.  Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RB1 MUTATED 21 24 36 5 2
RB1 WILD-TYPE 38 51 38 114 36

Figure S276.  Get High-res Image Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S645.  Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RB1 MUTATED 18 37 17 12 4
RB1 WILD-TYPE 33 39 44 59 91

Figure S277.  Get High-res Image Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S646.  Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RB1 MUTATED 26 20 4 10 17 6 0 1 4
RB1 WILD-TYPE 43 28 35 6 36 14 21 37 46

Figure S278.  Get High-res Image Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S647.  Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RB1 MUTATED 4 3 6 3 4 2
RB1 WILD-TYPE 9 13 8 8 7 7
'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S648.  Gene #59: 'RB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RB1 MUTATED 3 0 2 4 4 3 4 1 1
RB1 WILD-TYPE 8 7 5 5 4 4 7 8 4
'ALDH1A3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 0.18

Table S649.  Gene #60: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ALDH1A3 MUTATED 4 0 0 1 0
ALDH1A3 WILD-TYPE 28 18 46 26 23

Figure S279.  Get High-res Image Gene #60: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ALDH1A3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.64

Table S650.  Gene #60: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ALDH1A3 MUTATED 3 1 1
ALDH1A3 WILD-TYPE 40 66 35
'ALDH1A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00234 (Fisher's exact test), Q value = 0.041

Table S651.  Gene #60: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ALDH1A3 MUTATED 3 2 13
ALDH1A3 WILD-TYPE 39 171 134

Figure S280.  Get High-res Image Gene #60: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ALDH1A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S652.  Gene #60: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ALDH1A3 MUTATED 7 2 4
ALDH1A3 WILD-TYPE 55 71 71
'ALDH1A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S653.  Gene #60: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ALDH1A3 MUTATED 1 8 5
ALDH1A3 WILD-TYPE 69 112 95
'ALDH1A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.96

Table S654.  Gene #60: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ALDH1A3 MUTATED 1 2 0 3 1 4 1 1 1
ALDH1A3 WILD-TYPE 40 24 30 26 38 65 19 13 21
'ALDH1A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00393 (Fisher's exact test), Q value = 0.056

Table S655.  Gene #60: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ALDH1A3 MUTATED 0 8 4 5
ALDH1A3 WILD-TYPE 100 64 68 116

Figure S281.  Get High-res Image Gene #60: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ALDH1A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00136 (Fisher's exact test), Q value = 0.03

Table S656.  Gene #60: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ALDH1A3 MUTATED 1 1 10 2 3
ALDH1A3 WILD-TYPE 58 74 64 117 35

Figure S282.  Get High-res Image Gene #60: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ALDH1A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 0.34

Table S657.  Gene #60: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ALDH1A3 MUTATED 0 8 3 2 5
ALDH1A3 WILD-TYPE 51 68 58 69 90
'ALDH1A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0761 (Fisher's exact test), Q value = 0.3

Table S658.  Gene #60: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ALDH1A3 MUTATED 3 3 0 4 2 1 0 3 2
ALDH1A3 WILD-TYPE 66 45 39 12 51 19 21 35 48
'ALDH1A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S659.  Gene #60: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ALDH1A3 MUTATED 0 1 1 0 3 0
ALDH1A3 WILD-TYPE 13 15 13 11 8 9
'ALDH1A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S660.  Gene #60: 'ALDH1A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ALDH1A3 MUTATED 0 1 0 2 1 0 1 0 0
ALDH1A3 WILD-TYPE 11 6 7 7 7 7 10 9 5
'GMPS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.17

Table S661.  Gene #61: 'GMPS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GMPS MUTATED 4 0 0 2 0
GMPS WILD-TYPE 28 18 46 25 23

Figure S283.  Get High-res Image Gene #61: 'GMPS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GMPS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.88

Table S662.  Gene #61: 'GMPS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GMPS MUTATED 3 2 1
GMPS WILD-TYPE 40 65 35
'GMPS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00578 (Fisher's exact test), Q value = 0.072

Table S663.  Gene #61: 'GMPS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GMPS MUTATED 3 2 12
GMPS WILD-TYPE 39 171 135

Figure S284.  Get High-res Image Gene #61: 'GMPS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GMPS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S664.  Gene #61: 'GMPS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GMPS MUTATED 6 3 3
GMPS WILD-TYPE 56 70 72
'GMPS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00653 (Fisher's exact test), Q value = 0.076

Table S665.  Gene #61: 'GMPS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GMPS MUTATED 0 4 10
GMPS WILD-TYPE 70 116 90

Figure S285.  Get High-res Image Gene #61: 'GMPS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GMPS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S666.  Gene #61: 'GMPS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GMPS MUTATED 3 0 2 1 2 6 0 0 0
GMPS WILD-TYPE 38 26 28 28 37 63 20 14 22
'GMPS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S667.  Gene #61: 'GMPS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GMPS MUTATED 3 4 4 6
GMPS WILD-TYPE 97 68 68 115
'GMPS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 0.96

Table S668.  Gene #61: 'GMPS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GMPS MUTATED 2 3 5 4 3
GMPS WILD-TYPE 57 72 69 115 35
'GMPS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.9

Table S669.  Gene #61: 'GMPS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GMPS MUTATED 3 3 4 1 5
GMPS WILD-TYPE 48 73 57 70 90
'GMPS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S670.  Gene #61: 'GMPS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GMPS MUTATED 2 4 0 2 3 1 0 3 1
GMPS WILD-TYPE 67 44 39 14 50 19 21 35 49
'GMPS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.75

Table S671.  Gene #61: 'GMPS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GMPS MUTATED 0 2 0 1 0 0
GMPS WILD-TYPE 13 14 14 10 11 9
'GMPS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S672.  Gene #61: 'GMPS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GMPS MUTATED 2 0 1 0 0 0 0 0 0
GMPS WILD-TYPE 9 7 6 9 8 7 11 9 5
'KIAA1586 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0546 (Fisher's exact test), Q value = 0.25

Table S673.  Gene #62: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIAA1586 MUTATED 3 0 0 0 0
KIAA1586 WILD-TYPE 29 18 46 27 23
'KIAA1586 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S674.  Gene #62: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIAA1586 MUTATED 2 0 1
KIAA1586 WILD-TYPE 41 67 35
'KIAA1586 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.25

Table S675.  Gene #62: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA1586 MUTATED 0 2 8
KIAA1586 WILD-TYPE 42 171 139
'KIAA1586 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S676.  Gene #62: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA1586 MUTATED 4 2 2
KIAA1586 WILD-TYPE 58 71 73
'KIAA1586 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S677.  Gene #62: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA1586 MUTATED 2 3 4
KIAA1586 WILD-TYPE 68 117 96
'KIAA1586 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S678.  Gene #62: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA1586 MUTATED 2 1 0 2 0 2 2 0 0
KIAA1586 WILD-TYPE 39 25 30 27 39 67 18 14 22
'KIAA1586 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S679.  Gene #62: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA1586 MUTATED 1 2 4 4
KIAA1586 WILD-TYPE 99 70 68 117
'KIAA1586 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 0.94

Table S680.  Gene #62: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA1586 MUTATED 2 2 3 2 2
KIAA1586 WILD-TYPE 57 73 71 117 36
'KIAA1586 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S681.  Gene #62: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA1586 MUTATED 1 3 1 2 4
KIAA1586 WILD-TYPE 50 73 60 69 91
'KIAA1586 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S682.  Gene #62: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA1586 MUTATED 1 3 0 2 1 0 0 2 2
KIAA1586 WILD-TYPE 68 45 39 14 52 20 21 36 48
'KIAA1586 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S683.  Gene #62: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIAA1586 MUTATED 0 0 0 1 2 1
KIAA1586 WILD-TYPE 13 16 14 10 9 8
'KIAA1586 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S684.  Gene #62: 'KIAA1586 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIAA1586 MUTATED 0 0 1 0 1 0 1 1 0
KIAA1586 WILD-TYPE 11 7 6 9 7 7 10 8 5
'L1TD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S685.  Gene #63: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
L1TD1 MUTATED 4 0 0 2 0
L1TD1 WILD-TYPE 28 18 46 25 23

Figure S286.  Get High-res Image Gene #63: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'L1TD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S686.  Gene #63: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
L1TD1 MUTATED 4 1 1
L1TD1 WILD-TYPE 39 66 35
'L1TD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00839 (Fisher's exact test), Q value = 0.086

Table S687.  Gene #63: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
L1TD1 MUTATED 1 3 13
L1TD1 WILD-TYPE 41 170 134

Figure S287.  Get High-res Image Gene #63: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'L1TD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.32

Table S688.  Gene #63: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
L1TD1 MUTATED 6 1 5
L1TD1 WILD-TYPE 56 72 70
'L1TD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S689.  Gene #63: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
L1TD1 MUTATED 2 8 4
L1TD1 WILD-TYPE 68 112 96
'L1TD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S690.  Gene #63: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
L1TD1 MUTATED 3 2 1 1 2 3 1 1 0
L1TD1 WILD-TYPE 38 24 29 28 37 66 19 13 22
'L1TD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.6

Table S691.  Gene #63: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
L1TD1 MUTATED 2 6 3 6
L1TD1 WILD-TYPE 98 66 69 115
'L1TD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S692.  Gene #63: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
L1TD1 MUTATED 2 2 6 3 4
L1TD1 WILD-TYPE 57 73 68 116 34
'L1TD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S693.  Gene #63: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
L1TD1 MUTATED 2 5 2 1 6
L1TD1 WILD-TYPE 49 71 59 70 89
'L1TD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S694.  Gene #63: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
L1TD1 MUTATED 2 2 2 3 1 1 0 4 1
L1TD1 WILD-TYPE 67 46 37 13 52 19 21 34 49
'L1TD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S695.  Gene #63: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
L1TD1 MUTATED 0 1 0 0 2 0
L1TD1 WILD-TYPE 13 15 14 11 9 9
'L1TD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S696.  Gene #63: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
L1TD1 MUTATED 0 1 0 1 0 1 0 0 0
L1TD1 WILD-TYPE 11 6 7 8 8 6 11 9 5
'NLRC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 0.34

Table S697.  Gene #64: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NLRC4 MUTATED 3 0 0 1 0
NLRC4 WILD-TYPE 29 18 46 26 23
'NLRC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S698.  Gene #64: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NLRC4 MUTATED 3 1 0
NLRC4 WILD-TYPE 40 66 36
'NLRC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 0.31

Table S699.  Gene #64: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NLRC4 MUTATED 1 8 15
NLRC4 WILD-TYPE 41 165 132
'NLRC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S700.  Gene #64: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NLRC4 MUTATED 9 4 7
NLRC4 WILD-TYPE 53 69 68
'NLRC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S701.  Gene #64: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NLRC4 MUTATED 4 6 9
NLRC4 WILD-TYPE 66 114 91
'NLRC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.75

Table S702.  Gene #64: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NLRC4 MUTATED 1 1 1 1 4 7 3 1 0
NLRC4 WILD-TYPE 40 25 29 28 35 62 17 13 22
'NLRC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0899 (Fisher's exact test), Q value = 0.33

Table S703.  Gene #64: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NLRC4 MUTATED 4 6 9 5
NLRC4 WILD-TYPE 96 66 63 116
'NLRC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S704.  Gene #64: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NLRC4 MUTATED 5 4 10 2 3
NLRC4 WILD-TYPE 54 71 64 117 35

Figure S288.  Get High-res Image Gene #64: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NLRC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00372 (Fisher's exact test), Q value = 0.054

Table S705.  Gene #64: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NLRC4 MUTATED 4 11 5 0 4
NLRC4 WILD-TYPE 47 65 56 71 91

Figure S289.  Get High-res Image Gene #64: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NLRC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00257 (Fisher's exact test), Q value = 0.043

Table S706.  Gene #64: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NLRC4 MUTATED 9 7 0 2 1 2 0 3 0
NLRC4 WILD-TYPE 60 41 39 14 52 18 21 35 50

Figure S290.  Get High-res Image Gene #64: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NLRC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S707.  Gene #64: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NLRC4 MUTATED 1 1 1 1 2 1
NLRC4 WILD-TYPE 12 15 13 10 9 8
'NLRC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S708.  Gene #64: 'NLRC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NLRC4 MUTATED 2 0 0 1 1 1 2 0 0
NLRC4 WILD-TYPE 9 7 7 8 7 6 9 9 5
'ZDHHC7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00898 (Fisher's exact test), Q value = 0.089

Table S709.  Gene #65: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZDHHC7 MUTATED 4 0 0 0 0
ZDHHC7 WILD-TYPE 28 18 46 27 23

Figure S291.  Get High-res Image Gene #65: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZDHHC7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0512 (Fisher's exact test), Q value = 0.24

Table S710.  Gene #65: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZDHHC7 MUTATED 3 0 1
ZDHHC7 WILD-TYPE 40 67 35
'ZDHHC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 0.21

Table S711.  Gene #65: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZDHHC7 MUTATED 1 2 9
ZDHHC7 WILD-TYPE 41 171 138

Figure S292.  Get High-res Image Gene #65: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZDHHC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S712.  Gene #65: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZDHHC7 MUTATED 5 1 2
ZDHHC7 WILD-TYPE 57 72 73
'ZDHHC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S713.  Gene #65: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZDHHC7 MUTATED 0 2 7
ZDHHC7 WILD-TYPE 70 118 93

Figure S293.  Get High-res Image Gene #65: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZDHHC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S714.  Gene #65: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZDHHC7 MUTATED 0 0 0 0 2 6 1 0 0
ZDHHC7 WILD-TYPE 41 26 30 29 37 63 19 14 22
'ZDHHC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S715.  Gene #65: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZDHHC7 MUTATED 2 3 3 4
ZDHHC7 WILD-TYPE 98 69 69 117
'ZDHHC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.16

Table S716.  Gene #65: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZDHHC7 MUTATED 0 3 5 1 3
ZDHHC7 WILD-TYPE 59 72 69 118 35

Figure S294.  Get High-res Image Gene #65: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S717.  Gene #65: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZDHHC7 MUTATED 1 4 1 3 3
ZDHHC7 WILD-TYPE 50 72 60 68 92
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S718.  Gene #65: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZDHHC7 MUTATED 1 2 0 1 4 1 1 1 1
ZDHHC7 WILD-TYPE 68 46 39 15 49 19 20 37 49
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S719.  Gene #65: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZDHHC7 MUTATED 1 0 1 0 1 0
ZDHHC7 WILD-TYPE 12 16 13 11 10 9
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S720.  Gene #65: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZDHHC7 MUTATED 0 0 0 2 0 0 1 0 0
ZDHHC7 WILD-TYPE 11 7 7 7 8 7 10 9 5
'DCLK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00886 (Fisher's exact test), Q value = 0.088

Table S721.  Gene #66: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DCLK2 MUTATED 4 0 0 0 0
DCLK2 WILD-TYPE 28 18 46 27 23

Figure S295.  Get High-res Image Gene #66: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DCLK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 0.24

Table S722.  Gene #66: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DCLK2 MUTATED 3 0 1
DCLK2 WILD-TYPE 40 67 35
'DCLK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S723.  Gene #66: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DCLK2 MUTATED 1 4 8
DCLK2 WILD-TYPE 41 169 139
'DCLK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S724.  Gene #66: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DCLK2 MUTATED 4 4 2
DCLK2 WILD-TYPE 58 69 73
'DCLK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00556 (Fisher's exact test), Q value = 0.07

Table S725.  Gene #66: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DCLK2 MUTATED 1 1 9
DCLK2 WILD-TYPE 69 119 91

Figure S296.  Get High-res Image Gene #66: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DCLK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S726.  Gene #66: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DCLK2 MUTATED 1 0 1 0 1 6 1 1 0
DCLK2 WILD-TYPE 40 26 29 29 38 63 19 13 22
'DCLK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S727.  Gene #66: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DCLK2 MUTATED 3 4 3 4
DCLK2 WILD-TYPE 97 68 69 117
'DCLK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.099 (Fisher's exact test), Q value = 0.34

Table S728.  Gene #66: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DCLK2 MUTATED 2 3 5 1 3
DCLK2 WILD-TYPE 57 72 69 118 35
'DCLK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S729.  Gene #66: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DCLK2 MUTATED 1 3 4 3 3
DCLK2 WILD-TYPE 50 73 57 68 92
'DCLK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S730.  Gene #66: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DCLK2 MUTATED 3 3 1 1 1 1 0 3 1
DCLK2 WILD-TYPE 66 45 38 15 52 19 21 35 49
'DCLK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S731.  Gene #66: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DCLK2 MUTATED 2 0 0 0 0 1
DCLK2 WILD-TYPE 11 16 14 11 11 8
'DCLK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S732.  Gene #66: 'DCLK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DCLK2 MUTATED 1 0 0 1 0 0 0 1 0
DCLK2 WILD-TYPE 10 7 7 8 8 7 11 8 5
'C2ORF29 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.56

Table S733.  Gene #67: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C2ORF29 MUTATED 2 5 10
C2ORF29 WILD-TYPE 40 168 137
'C2ORF29 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00183 (Fisher's exact test), Q value = 0.036

Table S734.  Gene #67: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C2ORF29 MUTATED 8 0 8
C2ORF29 WILD-TYPE 54 73 67

Figure S297.  Get High-res Image Gene #67: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C2ORF29 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S735.  Gene #67: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C2ORF29 MUTATED 1 7 6
C2ORF29 WILD-TYPE 69 113 94
'C2ORF29 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S736.  Gene #67: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C2ORF29 MUTATED 1 0 1 1 2 5 2 2 0
C2ORF29 WILD-TYPE 40 26 29 28 37 64 18 12 22
'C2ORF29 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 0.16

Table S737.  Gene #67: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C2ORF29 MUTATED 5 7 4 1
C2ORF29 WILD-TYPE 95 65 68 120

Figure S298.  Get High-res Image Gene #67: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C2ORF29 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S738.  Gene #67: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C2ORF29 MUTATED 4 5 7 1 0
C2ORF29 WILD-TYPE 55 70 67 118 38

Figure S299.  Get High-res Image Gene #67: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C2ORF29 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S739.  Gene #67: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C2ORF29 MUTATED 4 7 4 1 1
C2ORF29 WILD-TYPE 47 69 57 70 94

Figure S300.  Get High-res Image Gene #67: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C2ORF29 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00795 (Fisher's exact test), Q value = 0.084

Table S740.  Gene #67: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C2ORF29 MUTATED 5 1 2 4 3 2 0 0 0
C2ORF29 WILD-TYPE 64 47 37 12 50 18 21 38 50

Figure S301.  Get High-res Image Gene #67: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C2ORF29 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S741.  Gene #67: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C2ORF29 MUTATED 0 0 1 1 2 0
C2ORF29 WILD-TYPE 13 16 13 10 9 9
'C2ORF29 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 0.98

Table S742.  Gene #67: 'C2ORF29 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C2ORF29 MUTATED 1 0 0 2 0 0 1 0 0
C2ORF29 WILD-TYPE 10 7 7 7 8 7 10 9 5
'PTCH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0018 (Fisher's exact test), Q value = 0.035

Table S743.  Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PTCH1 MUTATED 6 0 0 3 0
PTCH1 WILD-TYPE 26 18 46 24 23

Figure S302.  Get High-res Image Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTCH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00547 (Fisher's exact test), Q value = 0.07

Table S744.  Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PTCH1 MUTATED 7 2 0
PTCH1 WILD-TYPE 36 65 36

Figure S303.  Get High-res Image Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PTCH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.15

Table S745.  Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTCH1 MUTATED 6 35 46
PTCH1 WILD-TYPE 36 138 101

Figure S304.  Get High-res Image Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTCH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S746.  Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTCH1 MUTATED 26 23 29
PTCH1 WILD-TYPE 36 50 46
'PTCH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.18

Table S747.  Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTCH1 MUTATED 10 34 31
PTCH1 WILD-TYPE 60 86 69

Figure S305.  Get High-res Image Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PTCH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00093 (Fisher's exact test), Q value = 0.024

Table S748.  Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTCH1 MUTATED 4 4 3 10 7 27 9 6 5
PTCH1 WILD-TYPE 37 22 27 19 32 42 11 8 17

Figure S306.  Get High-res Image Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PTCH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S749.  Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTCH1 MUTATED 29 28 22 10
PTCH1 WILD-TYPE 71 44 50 111

Figure S307.  Get High-res Image Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTCH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S750.  Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTCH1 MUTATED 14 31 33 3 8
PTCH1 WILD-TYPE 45 44 41 116 30

Figure S308.  Get High-res Image Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTCH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S751.  Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTCH1 MUTATED 20 37 13 6 12
PTCH1 WILD-TYPE 31 39 48 65 83

Figure S309.  Get High-res Image Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PTCH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S752.  Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTCH1 MUTATED 22 15 8 9 13 12 1 7 1
PTCH1 WILD-TYPE 47 33 31 7 40 8 20 31 49

Figure S310.  Get High-res Image Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S753.  Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PTCH1 MUTATED 5 4 2 4 5 3
PTCH1 WILD-TYPE 8 12 12 7 6 6
'PTCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S754.  Gene #68: 'PTCH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PTCH1 MUTATED 3 1 0 4 2 3 4 4 2
PTCH1 WILD-TYPE 8 6 7 5 6 4 7 5 3
'LINGO4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S755.  Gene #69: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LINGO4 MUTATED 2 0 0 2 0
LINGO4 WILD-TYPE 30 18 46 25 23
'LINGO4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00991 (Fisher's exact test), Q value = 0.094

Table S756.  Gene #69: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LINGO4 MUTATED 4 0 0
LINGO4 WILD-TYPE 39 67 36

Figure S311.  Get High-res Image Gene #69: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LINGO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S757.  Gene #69: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LINGO4 MUTATED 1 1 8
LINGO4 WILD-TYPE 41 172 139

Figure S312.  Get High-res Image Gene #69: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LINGO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S758.  Gene #69: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LINGO4 MUTATED 1 2 2
LINGO4 WILD-TYPE 61 71 73
'LINGO4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.92

Table S759.  Gene #69: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LINGO4 MUTATED 2 3 5
LINGO4 WILD-TYPE 68 117 95
'LINGO4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S760.  Gene #69: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LINGO4 MUTATED 1 0 1 1 1 6 0 0 0
LINGO4 WILD-TYPE 40 26 29 28 38 63 20 14 22
'LINGO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S761.  Gene #69: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LINGO4 MUTATED 1 2 1 6
LINGO4 WILD-TYPE 99 70 71 115
'LINGO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0314 (Fisher's exact test), Q value = 0.19

Table S762.  Gene #69: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LINGO4 MUTATED 0 1 3 2 4
LINGO4 WILD-TYPE 59 74 71 117 34

Figure S313.  Get High-res Image Gene #69: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LINGO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S763.  Gene #69: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LINGO4 MUTATED 1 3 1 0 4
LINGO4 WILD-TYPE 50 73 60 71 91
'LINGO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00843 (Fisher's exact test), Q value = 0.086

Table S764.  Gene #69: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LINGO4 MUTATED 1 1 0 2 0 0 2 3 0
LINGO4 WILD-TYPE 68 47 39 14 53 20 19 35 50

Figure S314.  Get High-res Image Gene #69: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.52

Table S765.  Gene #70: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PIK3R1 MUTATED 2 0 0 2 1
PIK3R1 WILD-TYPE 30 18 46 25 22
'PIK3R1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S766.  Gene #70: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PIK3R1 MUTATED 1 2 2
PIK3R1 WILD-TYPE 42 65 34
'PIK3R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.76

Table S767.  Gene #70: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PIK3R1 MUTATED 3 19 21
PIK3R1 WILD-TYPE 39 154 126
'PIK3R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S768.  Gene #70: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PIK3R1 MUTATED 12 16 10
PIK3R1 WILD-TYPE 50 57 65
'PIK3R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00562 (Fisher's exact test), Q value = 0.071

Table S769.  Gene #70: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PIK3R1 MUTATED 2 17 18
PIK3R1 WILD-TYPE 68 103 82

Figure S315.  Get High-res Image Gene #70: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PIK3R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0569 (Fisher's exact test), Q value = 0.25

Table S770.  Gene #70: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PIK3R1 MUTATED 3 0 4 4 3 16 1 3 3
PIK3R1 WILD-TYPE 38 26 26 25 36 53 19 11 19
'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0215 (Fisher's exact test), Q value = 0.15

Table S771.  Gene #70: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PIK3R1 MUTATED 17 10 10 6
PIK3R1 WILD-TYPE 83 62 62 115

Figure S316.  Get High-res Image Gene #70: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00043 (Fisher's exact test), Q value = 0.015

Table S772.  Gene #70: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PIK3R1 MUTATED 8 16 13 4 2
PIK3R1 WILD-TYPE 51 59 61 115 36

Figure S317.  Get High-res Image Gene #70: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00161 (Fisher's exact test), Q value = 0.033

Table S773.  Gene #70: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PIK3R1 MUTATED 10 17 6 6 4
PIK3R1 WILD-TYPE 41 59 55 65 91

Figure S318.  Get High-res Image Gene #70: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S774.  Gene #70: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PIK3R1 MUTATED 11 8 5 3 8 4 1 1 2
PIK3R1 WILD-TYPE 58 40 34 13 45 16 20 37 48
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S775.  Gene #70: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PIK3R1 MUTATED 1 1 2 2 3 1
PIK3R1 WILD-TYPE 12 15 12 9 8 8
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.95

Table S776.  Gene #70: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PIK3R1 MUTATED 0 1 1 1 0 2 2 2 1
PIK3R1 WILD-TYPE 11 6 6 8 8 5 9 7 4
'C14ORF43 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0978 (Fisher's exact test), Q value = 0.34

Table S777.  Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C14ORF43 MUTATED 3 0 0 1 0
C14ORF43 WILD-TYPE 29 18 46 26 23
'C14ORF43 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.096

Table S778.  Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C14ORF43 MUTATED 4 0 0
C14ORF43 WILD-TYPE 39 67 36

Figure S319.  Get High-res Image Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00047 (Fisher's exact test), Q value = 0.015

Table S779.  Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C14ORF43 MUTATED 1 2 15
C14ORF43 WILD-TYPE 41 171 132

Figure S320.  Get High-res Image Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C14ORF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.16

Table S780.  Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C14ORF43 MUTATED 5 1 9
C14ORF43 WILD-TYPE 57 72 66

Figure S321.  Get High-res Image Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C14ORF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S781.  Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C14ORF43 MUTATED 3 5 8
C14ORF43 WILD-TYPE 67 115 92
'C14ORF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.99

Table S782.  Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C14ORF43 MUTATED 3 1 0 1 4 5 1 1 0
C14ORF43 WILD-TYPE 38 25 30 28 35 64 19 13 22
'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S783.  Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C14ORF43 MUTATED 1 7 6 4
C14ORF43 WILD-TYPE 99 65 66 117

Figure S322.  Get High-res Image Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S784.  Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C14ORF43 MUTATED 3 0 11 0 4
C14ORF43 WILD-TYPE 56 75 63 119 34

Figure S323.  Get High-res Image Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 0.14

Table S785.  Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C14ORF43 MUTATED 1 10 2 1 4
C14ORF43 WILD-TYPE 50 66 59 70 91

Figure S324.  Get High-res Image Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S786.  Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C14ORF43 MUTATED 3 5 0 6 0 1 0 3 0
C14ORF43 WILD-TYPE 66 43 39 10 53 19 21 35 50

Figure S325.  Get High-res Image Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00241 (Fisher's exact test), Q value = 0.042

Table S787.  Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C14ORF43 MUTATED 0 1 1 0 5 0
C14ORF43 WILD-TYPE 13 15 13 11 6 9

Figure S326.  Get High-res Image Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.064 (Fisher's exact test), Q value = 0.27

Table S788.  Gene #71: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C14ORF43 MUTATED 0 0 0 3 1 0 3 0 0
C14ORF43 WILD-TYPE 11 7 7 6 7 7 8 9 5
'C14ORF184 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S789.  Gene #72: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C14ORF184 MUTATED 2 2 2
C14ORF184 WILD-TYPE 40 171 145
'C14ORF184 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S790.  Gene #72: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C14ORF184 MUTATED 2 2 2
C14ORF184 WILD-TYPE 60 71 73
'C14ORF184 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S791.  Gene #72: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C14ORF184 MUTATED 1 1 4
C14ORF184 WILD-TYPE 69 119 96
'C14ORF184 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S792.  Gene #72: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C14ORF184 MUTATED 1 0 0 1 1 2 1 0 0
C14ORF184 WILD-TYPE 40 26 30 28 38 67 19 14 22
'C14ORF184 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S793.  Gene #72: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C14ORF184 MUTATED 1 4 1 0
C14ORF184 WILD-TYPE 99 68 71 121

Figure S327.  Get High-res Image Gene #72: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C14ORF184 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S794.  Gene #72: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C14ORF184 MUTATED 1 2 3 0 0
C14ORF184 WILD-TYPE 58 73 71 119 38
'C14ORF184 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S795.  Gene #72: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C14ORF184 MUTATED 0 6 0 0 0
C14ORF184 WILD-TYPE 51 70 61 71 95

Figure S328.  Get High-res Image Gene #72: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C14ORF184 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S796.  Gene #72: 'C14ORF184 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C14ORF184 MUTATED 2 1 0 2 1 0 0 0 0
C14ORF184 WILD-TYPE 67 47 39 14 52 20 21 38 50
'ATP6V1B1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00785 (Fisher's exact test), Q value = 0.083

Table S797.  Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATP6V1B1 MUTATED 5 0 0 1 0
ATP6V1B1 WILD-TYPE 27 18 46 26 23

Figure S329.  Get High-res Image Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S798.  Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATP6V1B1 MUTATED 4 1 1
ATP6V1B1 WILD-TYPE 39 66 35
'ATP6V1B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S799.  Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATP6V1B1 MUTATED 1 0 13
ATP6V1B1 WILD-TYPE 41 173 134

Figure S330.  Get High-res Image Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00894 (Fisher's exact test), Q value = 0.089

Table S800.  Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATP6V1B1 MUTATED 2 0 7
ATP6V1B1 WILD-TYPE 60 73 68

Figure S331.  Get High-res Image Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S801.  Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATP6V1B1 MUTATED 2 5 4
ATP6V1B1 WILD-TYPE 68 115 96
'ATP6V1B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.62

Table S802.  Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATP6V1B1 MUTATED 1 0 0 1 3 4 0 2 0
ATP6V1B1 WILD-TYPE 40 26 30 28 36 65 20 12 22
'ATP6V1B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.63

Table S803.  Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATP6V1B1 MUTATED 1 3 4 6
ATP6V1B1 WILD-TYPE 99 69 68 115
'ATP6V1B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00084 (Fisher's exact test), Q value = 0.022

Table S804.  Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATP6V1B1 MUTATED 0 2 6 1 5
ATP6V1B1 WILD-TYPE 59 73 68 118 33

Figure S332.  Get High-res Image Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0491 (Fisher's exact test), Q value = 0.24

Table S805.  Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATP6V1B1 MUTATED 0 7 1 1 5
ATP6V1B1 WILD-TYPE 51 69 60 70 90

Figure S333.  Get High-res Image Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.65

Table S806.  Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATP6V1B1 MUTATED 2 3 1 1 2 0 1 4 0
ATP6V1B1 WILD-TYPE 67 45 38 15 51 20 20 34 50
'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0043 (Fisher's exact test), Q value = 0.06

Table S807.  Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ATP6V1B1 MUTATED 0 1 0 0 4 0
ATP6V1B1 WILD-TYPE 13 15 14 11 7 9

Figure S334.  Get High-res Image Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S808.  Gene #73: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ATP6V1B1 MUTATED 0 0 1 1 0 1 2 0 0
ATP6V1B1 WILD-TYPE 11 7 6 8 8 6 9 9 5
'BCL9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00273 (Fisher's exact test), Q value = 0.045

Table S809.  Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BCL9 MUTATED 6 0 0 2 0
BCL9 WILD-TYPE 26 18 46 25 23

Figure S335.  Get High-res Image Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BCL9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00139 (Fisher's exact test), Q value = 0.031

Table S810.  Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BCL9 MUTATED 7 1 0
BCL9 WILD-TYPE 36 66 36

Figure S336.  Get High-res Image Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BCL9 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S811.  Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BCL9 MUTATED 1 2 18
BCL9 WILD-TYPE 41 171 129

Figure S337.  Get High-res Image Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BCL9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.97

Table S812.  Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BCL9 MUTATED 4 3 6
BCL9 WILD-TYPE 58 70 69
'BCL9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.18

Table S813.  Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BCL9 MUTATED 1 6 11
BCL9 WILD-TYPE 69 114 89

Figure S338.  Get High-res Image Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'BCL9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.95

Table S814.  Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BCL9 MUTATED 1 1 2 1 2 7 3 0 1
BCL9 WILD-TYPE 40 25 28 28 37 62 17 14 21
'BCL9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S815.  Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BCL9 MUTATED 4 4 5 9
BCL9 WILD-TYPE 96 68 67 112
'BCL9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S816.  Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BCL9 MUTATED 2 3 8 1 8
BCL9 WILD-TYPE 57 72 66 118 30

Figure S339.  Get High-res Image Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BCL9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.61

Table S817.  Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BCL9 MUTATED 1 7 3 2 8
BCL9 WILD-TYPE 50 69 58 69 87
'BCL9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00614 (Fisher's exact test), Q value = 0.074

Table S818.  Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BCL9 MUTATED 3 3 1 3 2 2 0 7 0
BCL9 WILD-TYPE 66 45 38 13 51 18 21 31 50

Figure S340.  Get High-res Image Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BCL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0867 (Fisher's exact test), Q value = 0.32

Table S819.  Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BCL9 MUTATED 1 0 1 1 4 1
BCL9 WILD-TYPE 12 16 13 10 7 8
'BCL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S820.  Gene #74: 'BCL9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BCL9 MUTATED 0 0 0 0 2 2 3 1 0
BCL9 WILD-TYPE 11 7 7 9 6 5 8 8 5
'NAA25 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00189 (Fisher's exact test), Q value = 0.037

Table S821.  Gene #75: 'NAA25 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NAA25 MUTATED 6 0 0 3 0
NAA25 WILD-TYPE 26 18 46 24 23

Figure S341.  Get High-res Image Gene #75: 'NAA25 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NAA25 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00728 (Fisher's exact test), Q value = 0.08

Table S822.  Gene #75: 'NAA25 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NAA25 MUTATED 7 1 1
NAA25 WILD-TYPE 36 66 35

Figure S342.  Get High-res Image Gene #75: 'NAA25 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NAA25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.011

Table S823.  Gene #75: 'NAA25 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NAA25 MUTATED 0 1 13
NAA25 WILD-TYPE 42 172 134

Figure S343.  Get High-res Image Gene #75: 'NAA25 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NAA25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S824.  Gene #75: 'NAA25 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NAA25 MUTATED 1 2 3
NAA25 WILD-TYPE 61 71 72
'NAA25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0627 (Fisher's exact test), Q value = 0.27

Table S825.  Gene #75: 'NAA25 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NAA25 MUTATED 0 6 7
NAA25 WILD-TYPE 70 114 93
'NAA25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S826.  Gene #75: 'NAA25 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NAA25 MUTATED 0 1 1 0 4 5 1 0 1
NAA25 WILD-TYPE 41 25 29 29 35 64 19 14 21
'NAA25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S827.  Gene #75: 'NAA25 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NAA25 MUTATED 2 2 1 9
NAA25 WILD-TYPE 98 70 71 112
'NAA25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00112 (Fisher's exact test), Q value = 0.027

Table S828.  Gene #75: 'NAA25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NAA25 MUTATED 2 2 1 2 7
NAA25 WILD-TYPE 57 73 73 117 31

Figure S344.  Get High-res Image Gene #75: 'NAA25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NAA25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.75

Table S829.  Gene #75: 'NAA25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NAA25 MUTATED 1 2 1 2 7
NAA25 WILD-TYPE 50 74 60 69 88
'NAA25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00354 (Fisher's exact test), Q value = 0.053

Table S830.  Gene #75: 'NAA25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NAA25 MUTATED 1 0 1 1 2 2 0 6 0
NAA25 WILD-TYPE 68 48 38 15 51 18 21 32 50

Figure S345.  Get High-res Image Gene #75: 'NAA25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLC26A8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S831.  Gene #76: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC26A8 MUTATED 2 1 0 1 0
SLC26A8 WILD-TYPE 30 17 46 26 23
'SLC26A8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S832.  Gene #76: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC26A8 MUTATED 2 1 1
SLC26A8 WILD-TYPE 41 66 35
'SLC26A8 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.018

Table S833.  Gene #76: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC26A8 MUTATED 0 2 14
SLC26A8 WILD-TYPE 42 171 133

Figure S346.  Get High-res Image Gene #76: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC26A8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.96

Table S834.  Gene #76: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC26A8 MUTATED 5 3 4
SLC26A8 WILD-TYPE 57 70 71
'SLC26A8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S835.  Gene #76: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC26A8 MUTATED 2 6 7
SLC26A8 WILD-TYPE 68 114 93
'SLC26A8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.99

Table S836.  Gene #76: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC26A8 MUTATED 1 2 2 1 1 7 0 0 1
SLC26A8 WILD-TYPE 40 24 28 28 38 62 20 14 21
'SLC26A8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.74

Table S837.  Gene #76: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC26A8 MUTATED 2 5 4 5
SLC26A8 WILD-TYPE 98 67 68 116
'SLC26A8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S838.  Gene #76: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC26A8 MUTATED 2 2 7 4 1
SLC26A8 WILD-TYPE 57 73 67 115 37
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S839.  Gene #76: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC26A8 MUTATED 1 7 1 2 4
SLC26A8 WILD-TYPE 50 69 60 69 91
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S840.  Gene #76: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC26A8 MUTATED 4 1 1 3 2 1 0 2 1
SLC26A8 WILD-TYPE 65 47 38 13 51 19 21 36 49
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S841.  Gene #76: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLC26A8 MUTATED 1 0 1 1 1 0
SLC26A8 WILD-TYPE 12 16 13 10 10 9
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S842.  Gene #76: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLC26A8 MUTATED 0 0 0 1 0 1 1 1 0
SLC26A8 WILD-TYPE 11 7 7 8 8 6 10 8 5
'IQCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S843.  Gene #77: 'IQCD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IQCD MUTATED 1 3 6
IQCD WILD-TYPE 41 170 141
'IQCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.77

Table S844.  Gene #77: 'IQCD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IQCD MUTATED 3 1 4
IQCD WILD-TYPE 59 72 71
'IQCD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S845.  Gene #77: 'IQCD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IQCD MUTATED 2 3 4
IQCD WILD-TYPE 68 117 96
'IQCD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S846.  Gene #77: 'IQCD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IQCD MUTATED 0 1 0 1 0 5 1 1 0
IQCD WILD-TYPE 41 25 30 28 39 64 19 13 22
'IQCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0911 (Fisher's exact test), Q value = 0.33

Table S847.  Gene #77: 'IQCD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IQCD MUTATED 2 5 2 1
IQCD WILD-TYPE 98 67 70 120
'IQCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0794 (Fisher's exact test), Q value = 0.31

Table S848.  Gene #77: 'IQCD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IQCD MUTATED 1 1 6 2 0
IQCD WILD-TYPE 58 74 68 117 38
'IQCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S849.  Gene #77: 'IQCD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IQCD MUTATED 2 3 2 0 3
IQCD WILD-TYPE 49 73 59 71 92
'IQCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S850.  Gene #77: 'IQCD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IQCD MUTATED 3 2 0 1 2 0 1 1 0
IQCD WILD-TYPE 66 46 39 15 51 20 20 37 50
'IQCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S851.  Gene #77: 'IQCD MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IQCD MUTATED 0 2 1 0 0 0
IQCD WILD-TYPE 13 14 13 11 11 9
'IQCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 0.99

Table S852.  Gene #77: 'IQCD MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IQCD MUTATED 1 1 0 0 1 0 0 0 0
IQCD WILD-TYPE 10 6 7 9 7 7 11 9 5
'CHD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00199 (Fisher's exact test), Q value = 0.038

Table S853.  Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CHD3 MUTATED 6 0 0 3 0
CHD3 WILD-TYPE 26 18 46 24 23

Figure S347.  Get High-res Image Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CHD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00047 (Fisher's exact test), Q value = 0.015

Table S854.  Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CHD3 MUTATED 8 1 0
CHD3 WILD-TYPE 35 66 36

Figure S348.  Get High-res Image Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CHD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S855.  Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CHD3 MUTATED 0 1 23
CHD3 WILD-TYPE 42 172 124

Figure S349.  Get High-res Image Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CHD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.16

Table S856.  Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CHD3 MUTATED 5 1 9
CHD3 WILD-TYPE 57 72 66

Figure S350.  Get High-res Image Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CHD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0715 (Fisher's exact test), Q value = 0.29

Table S857.  Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CHD3 MUTATED 3 7 13
CHD3 WILD-TYPE 67 113 87
'CHD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S858.  Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CHD3 MUTATED 2 0 1 2 6 9 2 1 0
CHD3 WILD-TYPE 39 26 29 27 33 60 18 13 22
'CHD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00594 (Fisher's exact test), Q value = 0.073

Table S859.  Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CHD3 MUTATED 1 10 4 9
CHD3 WILD-TYPE 99 62 68 112

Figure S351.  Get High-res Image Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CHD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S860.  Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CHD3 MUTATED 1 1 13 1 8
CHD3 WILD-TYPE 58 74 61 118 30

Figure S352.  Get High-res Image Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0079

Table S861.  Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CHD3 MUTATED 0 11 2 0 9
CHD3 WILD-TYPE 51 65 59 71 86

Figure S353.  Get High-res Image Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CHD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0069

Table S862.  Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CHD3 MUTATED 2 4 0 6 2 1 0 6 1
CHD3 WILD-TYPE 67 44 39 10 51 19 21 32 49

Figure S354.  Get High-res Image Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CHD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.018

Table S863.  Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CHD3 MUTATED 0 0 0 0 4 0
CHD3 WILD-TYPE 13 16 14 11 7 9

Figure S355.  Get High-res Image Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CHD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S864.  Gene #78: 'CHD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CHD3 MUTATED 0 0 0 2 0 1 1 0 0
CHD3 WILD-TYPE 11 7 7 7 8 6 10 9 5
'PLEKHF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S865.  Gene #79: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PLEKHF2 MUTATED 2 2 6
PLEKHF2 WILD-TYPE 40 171 141
'PLEKHF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S866.  Gene #79: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PLEKHF2 MUTATED 2 4 3
PLEKHF2 WILD-TYPE 60 69 72
'PLEKHF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.91

Table S867.  Gene #79: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PLEKHF2 MUTATED 2 2 4
PLEKHF2 WILD-TYPE 68 118 96
'PLEKHF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S868.  Gene #79: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PLEKHF2 MUTATED 1 0 0 1 1 3 0 2 0
PLEKHF2 WILD-TYPE 40 26 30 28 38 66 20 12 22
'PLEKHF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S869.  Gene #79: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PLEKHF2 MUTATED 3 4 2 1
PLEKHF2 WILD-TYPE 97 68 70 120
'PLEKHF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0408 (Fisher's exact test), Q value = 0.21

Table S870.  Gene #79: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PLEKHF2 MUTATED 1 4 4 0 1
PLEKHF2 WILD-TYPE 58 71 70 119 37

Figure S356.  Get High-res Image Gene #79: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PLEKHF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S871.  Gene #79: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PLEKHF2 MUTATED 1 6 1 1 1
PLEKHF2 WILD-TYPE 50 70 60 70 94
'PLEKHF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S872.  Gene #79: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PLEKHF2 MUTATED 4 1 2 1 1 0 0 1 0
PLEKHF2 WILD-TYPE 65 47 37 15 52 20 21 37 50
'PLEKHF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S873.  Gene #79: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PLEKHF2 MUTATED 1 0 0 1 1 0
PLEKHF2 WILD-TYPE 12 16 14 10 10 9
'PLEKHF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.92

Table S874.  Gene #79: 'PLEKHF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PLEKHF2 MUTATED 0 0 1 1 0 0 0 1 0
PLEKHF2 WILD-TYPE 11 7 6 8 8 7 11 8 5
'FKBP9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S875.  Gene #80: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FKBP9 MUTATED 2 0 0 2 0
FKBP9 WILD-TYPE 30 18 46 25 23
'FKBP9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S876.  Gene #80: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FKBP9 MUTATED 3 1 0
FKBP9 WILD-TYPE 40 66 36
'FKBP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S877.  Gene #80: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FKBP9 MUTATED 1 1 15
FKBP9 WILD-TYPE 41 172 132

Figure S357.  Get High-res Image Gene #80: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FKBP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.62

Table S878.  Gene #80: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FKBP9 MUTATED 5 2 6
FKBP9 WILD-TYPE 57 71 69
'FKBP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0631 (Fisher's exact test), Q value = 0.27

Table S879.  Gene #80: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FKBP9 MUTATED 1 4 9
FKBP9 WILD-TYPE 69 116 91
'FKBP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S880.  Gene #80: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FKBP9 MUTATED 0 1 1 1 2 9 0 0 0
FKBP9 WILD-TYPE 41 25 29 28 37 60 20 14 22
'FKBP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S881.  Gene #80: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FKBP9 MUTATED 3 6 4 4
FKBP9 WILD-TYPE 97 66 68 117
'FKBP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0309 (Fisher's exact test), Q value = 0.19

Table S882.  Gene #80: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FKBP9 MUTATED 2 4 7 1 3
FKBP9 WILD-TYPE 57 71 67 118 35

Figure S358.  Get High-res Image Gene #80: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FKBP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.097

Table S883.  Gene #80: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FKBP9 MUTATED 0 9 2 1 3
FKBP9 WILD-TYPE 51 67 59 70 92

Figure S359.  Get High-res Image Gene #80: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FKBP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S884.  Gene #80: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FKBP9 MUTATED 3 3 0 3 3 1 0 1 1
FKBP9 WILD-TYPE 66 45 39 13 50 19 21 37 49
'FKBP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S885.  Gene #80: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FKBP9 MUTATED 0 0 1 1 2 0
FKBP9 WILD-TYPE 13 16 13 10 9 9
'FKBP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S886.  Gene #80: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FKBP9 MUTATED 0 0 0 1 0 0 3 0 0
FKBP9 WILD-TYPE 11 7 7 8 8 7 8 9 5
'HPS3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0987 (Fisher's exact test), Q value = 0.34

Table S887.  Gene #81: 'HPS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HPS3 MUTATED 3 0 0 1 0
HPS3 WILD-TYPE 29 18 46 26 23
'HPS3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.095

Table S888.  Gene #81: 'HPS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HPS3 MUTATED 4 0 0
HPS3 WILD-TYPE 39 67 36

Figure S360.  Get High-res Image Gene #81: 'HPS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HPS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S889.  Gene #81: 'HPS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HPS3 MUTATED 2 6 12
HPS3 WILD-TYPE 40 167 135
'HPS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S890.  Gene #81: 'HPS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HPS3 MUTATED 3 5 8
HPS3 WILD-TYPE 59 68 67
'HPS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S891.  Gene #81: 'HPS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HPS3 MUTATED 2 5 9
HPS3 WILD-TYPE 68 115 91
'HPS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.72

Table S892.  Gene #81: 'HPS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HPS3 MUTATED 2 2 0 1 1 8 1 1 0
HPS3 WILD-TYPE 39 24 30 28 38 61 19 13 22
'HPS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.62

Table S893.  Gene #81: 'HPS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HPS3 MUTATED 6 7 2 5
HPS3 WILD-TYPE 94 65 70 116
'HPS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.099

Table S894.  Gene #81: 'HPS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HPS3 MUTATED 2 7 6 1 4
HPS3 WILD-TYPE 57 68 68 118 34

Figure S361.  Get High-res Image Gene #81: 'HPS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HPS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0705 (Fisher's exact test), Q value = 0.29

Table S895.  Gene #81: 'HPS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HPS3 MUTATED 5 7 1 1 4
HPS3 WILD-TYPE 46 69 60 70 91
'HPS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S896.  Gene #81: 'HPS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HPS3 MUTATED 3 2 0 2 4 2 0 2 3
HPS3 WILD-TYPE 66 46 39 14 49 18 21 36 47
'ATM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.17

Table S897.  Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATM MUTATED 9 0 5 5 1
ATM WILD-TYPE 23 18 41 22 22

Figure S362.  Get High-res Image Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S898.  Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATM MUTATED 9 6 5
ATM WILD-TYPE 34 61 31
'ATM MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S899.  Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATM MUTATED 6 53 72
ATM WILD-TYPE 36 120 75

Figure S363.  Get High-res Image Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S900.  Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATM MUTATED 30 35 44
ATM WILD-TYPE 32 38 31
'ATM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00339 (Fisher's exact test), Q value = 0.051

Table S901.  Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATM MUTATED 16 43 48
ATM WILD-TYPE 54 77 52

Figure S364.  Get High-res Image Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ATM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00908 (Fisher's exact test), Q value = 0.089

Table S902.  Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATM MUTATED 8 8 8 13 10 37 10 4 9
ATM WILD-TYPE 33 18 22 16 29 32 10 10 13

Figure S365.  Get High-res Image Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S903.  Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATM MUTATED 39 42 30 21
ATM WILD-TYPE 61 30 42 100

Figure S366.  Get High-res Image Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ATM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S904.  Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATM MUTATED 21 45 42 12 12
ATM WILD-TYPE 38 30 32 107 26

Figure S367.  Get High-res Image Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S905.  Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATM MUTATED 27 55 14 15 20
ATM WILD-TYPE 24 21 47 56 75

Figure S368.  Get High-res Image Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ATM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S906.  Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATM MUTATED 36 18 14 15 18 12 1 11 6
ATM WILD-TYPE 33 30 25 1 35 8 20 27 44

Figure S369.  Get High-res Image Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0716 (Fisher's exact test), Q value = 0.29

Table S907.  Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ATM MUTATED 5 4 5 3 9 4
ATM WILD-TYPE 8 12 9 8 2 5
'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S908.  Gene #82: 'ATM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ATM MUTATED 6 1 4 6 3 1 5 3 1
ATM WILD-TYPE 5 6 3 3 5 6 6 6 4
'RLIM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S909.  Gene #83: 'RLIM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RLIM MUTATED 1 5 8
RLIM WILD-TYPE 41 168 139
'RLIM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.89

Table S910.  Gene #83: 'RLIM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RLIM MUTATED 3 3 6
RLIM WILD-TYPE 59 70 69
'RLIM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S911.  Gene #83: 'RLIM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RLIM MUTATED 4 3 6
RLIM WILD-TYPE 66 117 94
'RLIM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S912.  Gene #83: 'RLIM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RLIM MUTATED 3 0 0 0 2 3 2 1 2
RLIM WILD-TYPE 38 26 30 29 37 66 18 13 20
'RLIM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0777 (Fisher's exact test), Q value = 0.3

Table S913.  Gene #83: 'RLIM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RLIM MUTATED 1 5 5 3
RLIM WILD-TYPE 99 67 67 118
'RLIM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0813 (Fisher's exact test), Q value = 0.31

Table S914.  Gene #83: 'RLIM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RLIM MUTATED 5 1 5 2 1
RLIM WILD-TYPE 54 74 69 117 37
'RLIM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S915.  Gene #83: 'RLIM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RLIM MUTATED 4 4 3 2 1
RLIM WILD-TYPE 47 72 58 69 94
'RLIM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S916.  Gene #83: 'RLIM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RLIM MUTATED 4 1 3 2 1 2 0 1 0
RLIM WILD-TYPE 65 47 36 14 52 18 21 37 50
'RLIM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S917.  Gene #83: 'RLIM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RLIM MUTATED 0 1 1 1 1 0
RLIM WILD-TYPE 13 15 13 10 10 9
'RLIM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S918.  Gene #83: 'RLIM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RLIM MUTATED 0 1 1 0 2 0 0 0 0
RLIM WILD-TYPE 11 6 6 9 6 7 11 9 5
'CYLD MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.57

Table S919.  Gene #84: 'CYLD MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CYLD MUTATED 2 1 0 1 0
CYLD WILD-TYPE 30 17 46 26 23
'CYLD MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.89

Table S920.  Gene #84: 'CYLD MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CYLD MUTATED 2 2 0
CYLD WILD-TYPE 41 65 36
'CYLD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S921.  Gene #84: 'CYLD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CYLD MUTATED 4 7 10
CYLD WILD-TYPE 38 166 137
'CYLD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S922.  Gene #84: 'CYLD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CYLD MUTATED 6 5 7
CYLD WILD-TYPE 56 68 68
'CYLD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.16

Table S923.  Gene #84: 'CYLD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CYLD MUTATED 1 7 12
CYLD WILD-TYPE 69 113 88

Figure S370.  Get High-res Image Gene #84: 'CYLD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CYLD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 0.93

Table S924.  Gene #84: 'CYLD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CYLD MUTATED 4 2 1 0 2 7 1 2 1
CYLD WILD-TYPE 37 24 29 29 37 62 19 12 21
'CYLD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.37

Table S925.  Gene #84: 'CYLD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CYLD MUTATED 4 7 7 4
CYLD WILD-TYPE 96 65 65 117
'CYLD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S926.  Gene #84: 'CYLD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CYLD MUTATED 5 6 6 3 2
CYLD WILD-TYPE 54 69 68 116 36
'CYLD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S927.  Gene #84: 'CYLD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CYLD MUTATED 5 4 6 2 5
CYLD WILD-TYPE 46 72 55 69 90
'CYLD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0692 (Fisher's exact test), Q value = 0.28

Table S928.  Gene #84: 'CYLD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CYLD MUTATED 4 4 0 3 2 4 1 2 2
CYLD WILD-TYPE 65 44 39 13 51 16 20 36 48
'CYLD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S929.  Gene #84: 'CYLD MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CYLD MUTATED 1 1 1 1 1 1
CYLD WILD-TYPE 12 15 13 10 10 8
'CYLD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S930.  Gene #84: 'CYLD MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CYLD MUTATED 2 1 1 1 0 0 0 0 1
CYLD WILD-TYPE 9 6 6 8 8 7 11 9 4
'GGT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S931.  Gene #85: 'GGT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GGT1 MUTATED 0 7 1
GGT1 WILD-TYPE 42 166 146
'GGT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00368 (Fisher's exact test), Q value = 0.054

Table S932.  Gene #85: 'GGT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GGT1 MUTATED 0 7 1
GGT1 WILD-TYPE 62 66 74

Figure S371.  Get High-res Image Gene #85: 'GGT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GGT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S933.  Gene #85: 'GGT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GGT1 MUTATED 1 3 4
GGT1 WILD-TYPE 69 117 96
'GGT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 0.91

Table S934.  Gene #85: 'GGT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GGT1 MUTATED 1 0 0 1 0 3 1 1 1
GGT1 WILD-TYPE 40 26 30 28 39 66 19 13 21
'GGT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0021 (Fisher's exact test), Q value = 0.039

Table S935.  Gene #85: 'GGT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GGT1 MUTATED 7 0 1 0
GGT1 WILD-TYPE 93 72 71 121

Figure S372.  Get High-res Image Gene #85: 'GGT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GGT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0026 (Fisher's exact test), Q value = 0.043

Table S936.  Gene #85: 'GGT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GGT1 MUTATED 4 4 0 0 0
GGT1 WILD-TYPE 55 71 74 119 38

Figure S373.  Get High-res Image Gene #85: 'GGT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GGT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00503 (Fisher's exact test), Q value = 0.066

Table S937.  Gene #85: 'GGT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GGT1 MUTATED 5 1 1 1 0
GGT1 WILD-TYPE 46 75 60 70 95

Figure S374.  Get High-res Image Gene #85: 'GGT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GGT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S938.  Gene #85: 'GGT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GGT1 MUTATED 3 2 1 0 2 0 0 0 0
GGT1 WILD-TYPE 66 46 38 16 51 20 21 38 50
'GGT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S939.  Gene #85: 'GGT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GGT1 MUTATED 2 0 0 1 0 0
GGT1 WILD-TYPE 11 16 14 10 11 9
'GGT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S940.  Gene #85: 'GGT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GGT1 MUTATED 0 0 1 1 0 0 0 0 1
GGT1 WILD-TYPE 11 7 6 8 8 7 11 9 4
'CYSLTR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S941.  Gene #86: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CYSLTR2 MUTATED 2 0 1 0 0
CYSLTR2 WILD-TYPE 30 18 45 27 23
'CYSLTR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S942.  Gene #86: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CYSLTR2 MUTATED 2 1 0
CYSLTR2 WILD-TYPE 41 66 36
'CYSLTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.56

Table S943.  Gene #86: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CYSLTR2 MUTATED 0 6 9
CYSLTR2 WILD-TYPE 42 167 138
'CYSLTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S944.  Gene #86: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CYSLTR2 MUTATED 4 4 4
CYSLTR2 WILD-TYPE 58 69 71
'CYSLTR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.9

Table S945.  Gene #86: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CYSLTR2 MUTATED 3 4 6
CYSLTR2 WILD-TYPE 67 116 94
'CYSLTR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S946.  Gene #86: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CYSLTR2 MUTATED 4 1 0 0 0 5 1 1 1
CYSLTR2 WILD-TYPE 37 25 30 29 39 64 19 13 21
'CYSLTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S947.  Gene #86: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CYSLTR2 MUTATED 3 4 5 3
CYSLTR2 WILD-TYPE 97 68 67 118
'CYSLTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S948.  Gene #86: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CYSLTR2 MUTATED 3 2 5 3 2
CYSLTR2 WILD-TYPE 56 73 69 116 36
'CYSLTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S949.  Gene #86: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CYSLTR2 MUTATED 3 5 4 1 2
CYSLTR2 WILD-TYPE 48 71 57 70 93
'CYSLTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S950.  Gene #86: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CYSLTR2 MUTATED 3 4 0 0 3 1 2 2 0
CYSLTR2 WILD-TYPE 66 44 39 16 50 19 19 36 50
'CYSLTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.059 (Fisher's exact test), Q value = 0.26

Table S951.  Gene #86: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CYSLTR2 MUTATED 0 0 1 1 3 0
CYSLTR2 WILD-TYPE 13 16 13 10 8 9
'CYSLTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S952.  Gene #86: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CYSLTR2 MUTATED 0 0 1 0 0 1 2 1 0
CYSLTR2 WILD-TYPE 11 7 6 9 8 6 9 8 5
'ATG5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S953.  Gene #87: 'ATG5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATG5 MUTATED 1 3 4
ATG5 WILD-TYPE 41 170 143
'ATG5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S954.  Gene #87: 'ATG5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATG5 MUTATED 1 1 4
ATG5 WILD-TYPE 61 72 71
'ATG5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S955.  Gene #87: 'ATG5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATG5 MUTATED 1 3 2
ATG5 WILD-TYPE 69 117 98
'ATG5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S956.  Gene #87: 'ATG5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATG5 MUTATED 0 1 0 2 0 2 1 0 0
ATG5 WILD-TYPE 41 25 30 27 39 67 19 14 22
'ATG5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S957.  Gene #87: 'ATG5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATG5 MUTATED 2 4 0 2
ATG5 WILD-TYPE 98 68 72 119
'ATG5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S958.  Gene #87: 'ATG5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATG5 MUTATED 0 2 4 1 1
ATG5 WILD-TYPE 59 73 70 118 37
'ATG5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S959.  Gene #87: 'ATG5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATG5 MUTATED 2 3 0 0 2
ATG5 WILD-TYPE 49 73 61 71 93
'ATG5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S960.  Gene #87: 'ATG5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATG5 MUTATED 1 0 1 2 1 0 0 2 0
ATG5 WILD-TYPE 68 48 38 14 52 20 21 36 50
'MAP4K3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S961.  Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MAP4K3 MUTATED 1 0 0 2 0
MAP4K3 WILD-TYPE 31 18 46 25 23
'MAP4K3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S962.  Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MAP4K3 MUTATED 2 1 0
MAP4K3 WILD-TYPE 41 66 36
'MAP4K3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00922 (Fisher's exact test), Q value = 0.09

Table S963.  Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAP4K3 MUTATED 1 3 13
MAP4K3 WILD-TYPE 41 170 134

Figure S375.  Get High-res Image Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP4K3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 0.24

Table S964.  Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAP4K3 MUTATED 5 1 8
MAP4K3 WILD-TYPE 57 72 67

Figure S376.  Get High-res Image Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MAP4K3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.17

Table S965.  Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAP4K3 MUTATED 1 4 10
MAP4K3 WILD-TYPE 69 116 90

Figure S377.  Get High-res Image Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MAP4K3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S966.  Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAP4K3 MUTATED 2 2 2 1 2 5 1 0 0
MAP4K3 WILD-TYPE 39 24 28 28 37 64 19 14 22
'MAP4K3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 0.24

Table S967.  Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAP4K3 MUTATED 2 5 7 3
MAP4K3 WILD-TYPE 98 67 65 118

Figure S378.  Get High-res Image Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAP4K3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S968.  Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAP4K3 MUTATED 5 2 7 1 2
MAP4K3 WILD-TYPE 54 73 67 118 36

Figure S379.  Get High-res Image Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP4K3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.14

Table S969.  Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAP4K3 MUTATED 2 7 5 0 2
MAP4K3 WILD-TYPE 49 69 56 71 93

Figure S380.  Get High-res Image Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MAP4K3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00292 (Fisher's exact test), Q value = 0.047

Table S970.  Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAP4K3 MUTATED 4 3 1 5 1 1 0 1 0
MAP4K3 WILD-TYPE 65 45 38 11 52 19 21 37 50

Figure S381.  Get High-res Image Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP4K3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.96

Table S971.  Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAP4K3 MUTATED 0 2 2 0 1 1
MAP4K3 WILD-TYPE 13 14 12 11 10 8
'MAP4K3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S972.  Gene #88: 'MAP4K3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAP4K3 MUTATED 4 0 0 1 0 0 1 0 0
MAP4K3 WILD-TYPE 7 7 7 8 8 7 10 9 5
'PRPS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 0.29

Table S973.  Gene #89: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRPS1 MUTATED 3 2 3
PRPS1 WILD-TYPE 39 171 144
'PRPS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S974.  Gene #89: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRPS1 MUTATED 4 1 3
PRPS1 WILD-TYPE 58 72 72
'PRPS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S975.  Gene #89: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRPS1 MUTATED 2 1 5
PRPS1 WILD-TYPE 68 119 95
'PRPS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S976.  Gene #89: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRPS1 MUTATED 0 0 0 1 2 5 0 0 0
PRPS1 WILD-TYPE 41 26 30 28 37 64 20 14 22
'PRPS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S977.  Gene #89: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRPS1 MUTATED 1 4 2 1
PRPS1 WILD-TYPE 99 68 70 120
'PRPS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0886 (Fisher's exact test), Q value = 0.32

Table S978.  Gene #89: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRPS1 MUTATED 1 1 5 1 0
PRPS1 WILD-TYPE 58 74 69 118 38
'PRPS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S979.  Gene #89: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRPS1 MUTATED 2 5 1 0 0
PRPS1 WILD-TYPE 49 71 60 71 95

Figure S382.  Get High-res Image Gene #89: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PRPS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S980.  Gene #89: 'PRPS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRPS1 MUTATED 3 0 1 2 2 0 0 0 0
PRPS1 WILD-TYPE 66 48 38 14 51 20 21 38 50
'KCTD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S981.  Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KCTD3 MUTATED 0 1 16
KCTD3 WILD-TYPE 42 172 131

Figure S383.  Get High-res Image Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KCTD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0398 (Fisher's exact test), Q value = 0.21

Table S982.  Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KCTD3 MUTATED 7 1 6
KCTD3 WILD-TYPE 55 72 69

Figure S384.  Get High-res Image Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KCTD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S983.  Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KCTD3 MUTATED 5 3 8
KCTD3 WILD-TYPE 65 117 92
'KCTD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S984.  Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KCTD3 MUTATED 2 2 2 0 0 8 1 1 0
KCTD3 WILD-TYPE 39 24 28 29 39 61 19 13 22
'KCTD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00912 (Fisher's exact test), Q value = 0.09

Table S985.  Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KCTD3 MUTATED 1 7 6 3
KCTD3 WILD-TYPE 99 65 66 118

Figure S385.  Get High-res Image Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KCTD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S986.  Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KCTD3 MUTATED 1 1 12 1 2
KCTD3 WILD-TYPE 58 74 62 118 36

Figure S386.  Get High-res Image Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KCTD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00206 (Fisher's exact test), Q value = 0.038

Table S987.  Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KCTD3 MUTATED 0 10 3 1 2
KCTD3 WILD-TYPE 51 66 58 70 93

Figure S387.  Get High-res Image Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KCTD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00059 (Fisher's exact test), Q value = 0.018

Table S988.  Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KCTD3 MUTATED 2 3 1 6 1 1 0 1 1
KCTD3 WILD-TYPE 67 45 38 10 52 19 21 37 49

Figure S388.  Get High-res Image Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KCTD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0738 (Fisher's exact test), Q value = 0.29

Table S989.  Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KCTD3 MUTATED 0 1 2 1 4 0
KCTD3 WILD-TYPE 13 15 12 10 7 9
'KCTD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0399 (Fisher's exact test), Q value = 0.21

Table S990.  Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KCTD3 MUTATED 0 0 0 2 2 0 4 0 0
KCTD3 WILD-TYPE 11 7 7 7 6 7 7 9 5

Figure S389.  Get High-res Image Gene #90: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PTGDR MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S991.  Gene #91: 'PTGDR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTGDR MUTATED 0 4 3
PTGDR WILD-TYPE 42 169 144
'PTGDR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S992.  Gene #91: 'PTGDR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTGDR MUTATED 3 1 3
PTGDR WILD-TYPE 59 72 72
'PTGDR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S993.  Gene #91: 'PTGDR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTGDR MUTATED 0 5 2
PTGDR WILD-TYPE 70 115 98
'PTGDR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S994.  Gene #91: 'PTGDR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTGDR MUTATED 0 2 1 1 0 2 1 0 0
PTGDR WILD-TYPE 41 24 29 28 39 67 19 14 22
'PTGDR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S995.  Gene #91: 'PTGDR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTGDR MUTATED 2 2 1 2
PTGDR WILD-TYPE 98 70 71 119
'PTGDR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S996.  Gene #91: 'PTGDR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTGDR MUTATED 0 3 2 2 0
PTGDR WILD-TYPE 59 72 72 117 38
'PTGDR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S997.  Gene #91: 'PTGDR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTGDR MUTATED 2 3 1 0 1
PTGDR WILD-TYPE 49 73 60 71 94
'PTGDR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S998.  Gene #91: 'PTGDR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTGDR MUTATED 1 1 1 0 2 1 0 0 1
PTGDR WILD-TYPE 68 47 38 16 51 19 21 38 49
'BCORL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S999.  Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BCORL1 MUTATED 2 0 0 2 0
BCORL1 WILD-TYPE 30 18 46 25 23
'BCORL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S1000.  Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BCORL1 MUTATED 2 2 0
BCORL1 WILD-TYPE 41 65 36
'BCORL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00154 (Fisher's exact test), Q value = 0.032

Table S1001.  Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BCORL1 MUTATED 2 4 18
BCORL1 WILD-TYPE 40 169 129

Figure S390.  Get High-res Image Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BCORL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0469 (Fisher's exact test), Q value = 0.23

Table S1002.  Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BCORL1 MUTATED 6 3 12
BCORL1 WILD-TYPE 56 70 63

Figure S391.  Get High-res Image Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BCORL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0394 (Fisher's exact test), Q value = 0.21

Table S1003.  Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BCORL1 MUTATED 1 13 8
BCORL1 WILD-TYPE 69 107 92

Figure S392.  Get High-res Image Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'BCORL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0367 (Fisher's exact test), Q value = 0.2

Table S1004.  Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BCORL1 MUTATED 0 2 2 6 2 7 3 0 0
BCORL1 WILD-TYPE 41 24 28 23 37 62 17 14 22

Figure S393.  Get High-res Image Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 0.28

Table S1005.  Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BCORL1 MUTATED 4 9 7 5
BCORL1 WILD-TYPE 96 63 65 116
'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.001 (Fisher's exact test), Q value = 0.025

Table S1006.  Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BCORL1 MUTATED 1 4 14 4 2
BCORL1 WILD-TYPE 58 71 60 115 36

Figure S394.  Get High-res Image Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.012

Table S1007.  Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BCORL1 MUTATED 1 15 2 2 5
BCORL1 WILD-TYPE 50 61 59 69 90

Figure S395.  Get High-res Image Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S1008.  Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BCORL1 MUTATED 4 6 2 4 4 2 0 1 2
BCORL1 WILD-TYPE 65 42 37 12 49 18 21 37 48
'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0926 (Fisher's exact test), Q value = 0.33

Table S1009.  Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BCORL1 MUTATED 2 0 2 0 3 0
BCORL1 WILD-TYPE 11 16 12 11 8 9
'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.63

Table S1010.  Gene #92: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BCORL1 MUTATED 0 0 0 2 0 2 2 1 0
BCORL1 WILD-TYPE 11 7 7 7 8 5 9 8 5
'IDH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S1011.  Gene #93: 'IDH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IDH2 MUTATED 3 0 1 2 0
IDH2 WILD-TYPE 29 18 45 25 23
'IDH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00705 (Fisher's exact test), Q value = 0.079

Table S1012.  Gene #93: 'IDH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IDH2 MUTATED 5 0 1
IDH2 WILD-TYPE 38 67 35

Figure S396.  Get High-res Image Gene #93: 'IDH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IDH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.91

Table S1013.  Gene #93: 'IDH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IDH2 MUTATED 1 7 9
IDH2 WILD-TYPE 41 166 138
'IDH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1014.  Gene #93: 'IDH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IDH2 MUTATED 3 2 4
IDH2 WILD-TYPE 59 71 71
'IDH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.98

Table S1015.  Gene #93: 'IDH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IDH2 MUTATED 2 5 6
IDH2 WILD-TYPE 68 115 94
'IDH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1016.  Gene #93: 'IDH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IDH2 MUTATED 0 1 2 1 2 4 2 0 1
IDH2 WILD-TYPE 41 25 28 28 37 65 18 14 21
'IDH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S1017.  Gene #93: 'IDH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IDH2 MUTATED 5 6 1 5
IDH2 WILD-TYPE 95 66 71 116
'IDH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0672 (Fisher's exact test), Q value = 0.28

Table S1018.  Gene #93: 'IDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IDH2 MUTATED 2 4 4 2 5
IDH2 WILD-TYPE 57 71 70 117 33
'IDH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0946 (Fisher's exact test), Q value = 0.34

Table S1019.  Gene #93: 'IDH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IDH2 MUTATED 2 8 1 1 5
IDH2 WILD-TYPE 49 68 60 70 90
'IDH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0038 (Fisher's exact test), Q value = 0.055

Table S1020.  Gene #93: 'IDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IDH2 MUTATED 4 0 0 3 4 0 3 3 0
IDH2 WILD-TYPE 65 48 39 13 49 20 18 35 50

Figure S397.  Get High-res Image Gene #93: 'IDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TMEM126A MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1021.  Gene #94: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMEM126A MUTATED 0 4 3
TMEM126A WILD-TYPE 42 169 144
'TMEM126A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S1022.  Gene #94: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TMEM126A MUTATED 0 2 5
TMEM126A WILD-TYPE 62 71 70
'TMEM126A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.086 (Fisher's exact test), Q value = 0.32

Table S1023.  Gene #94: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TMEM126A MUTATED 0 4 0
TMEM126A WILD-TYPE 70 116 100
'TMEM126A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S1024.  Gene #94: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TMEM126A MUTATED 0 1 2 1 0 0 0 0 0
TMEM126A WILD-TYPE 41 25 28 28 39 69 20 14 22
'TMEM126A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.22

Table S1025.  Gene #94: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMEM126A MUTATED 5 1 1 0
TMEM126A WILD-TYPE 95 71 71 121

Figure S398.  Get High-res Image Gene #94: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TMEM126A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0897 (Fisher's exact test), Q value = 0.33

Table S1026.  Gene #94: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMEM126A MUTATED 1 3 3 0 0
TMEM126A WILD-TYPE 58 72 71 119 38
'TMEM126A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0946 (Fisher's exact test), Q value = 0.34

Table S1027.  Gene #94: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMEM126A MUTATED 3 1 2 1 0
TMEM126A WILD-TYPE 48 75 59 70 95
'TMEM126A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.95

Table S1028.  Gene #94: 'TMEM126A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMEM126A MUTATED 1 2 1 0 2 1 0 0 0
TMEM126A WILD-TYPE 68 46 38 16 51 19 21 38 50
'GRB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.94

Table S1029.  Gene #95: 'GRB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GRB2 MUTATED 1 3 5
GRB2 WILD-TYPE 41 170 142
'GRB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.73

Table S1030.  Gene #95: 'GRB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GRB2 MUTATED 2 1 4
GRB2 WILD-TYPE 60 72 71
'GRB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1031.  Gene #95: 'GRB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GRB2 MUTATED 1 4 2
GRB2 WILD-TYPE 69 116 98
'GRB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S1032.  Gene #95: 'GRB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GRB2 MUTATED 1 1 0 2 0 1 2 0 0
GRB2 WILD-TYPE 40 25 30 27 39 68 18 14 22
'GRB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1033.  Gene #95: 'GRB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GRB2 MUTATED 2 3 2 2
GRB2 WILD-TYPE 98 69 70 119
'GRB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0465 (Fisher's exact test), Q value = 0.23

Table S1034.  Gene #95: 'GRB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GRB2 MUTATED 1 2 4 0 2
GRB2 WILD-TYPE 58 73 70 119 36

Figure S399.  Get High-res Image Gene #95: 'GRB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GRB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S1035.  Gene #95: 'GRB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GRB2 MUTATED 1 4 1 1 1
GRB2 WILD-TYPE 50 72 60 70 94
'GRB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S1036.  Gene #95: 'GRB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GRB2 MUTATED 1 0 1 2 2 1 0 1 0
GRB2 WILD-TYPE 68 48 38 14 51 19 21 37 50
'GRB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S1037.  Gene #95: 'GRB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GRB2 MUTATED 1 0 2 0 0 0
GRB2 WILD-TYPE 12 16 12 11 11 9
'GRB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S1038.  Gene #95: 'GRB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GRB2 MUTATED 0 0 0 1 2 0 0 0 0
GRB2 WILD-TYPE 11 7 7 8 6 7 11 9 5
'PLXNA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0053

Table S1039.  Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PLXNA3 MUTATED 1 1 15
PLXNA3 WILD-TYPE 41 172 132

Figure S400.  Get High-res Image Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PLXNA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00088 (Fisher's exact test), Q value = 0.023

Table S1040.  Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PLXNA3 MUTATED 5 0 11
PLXNA3 WILD-TYPE 57 73 64

Figure S401.  Get High-res Image Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PLXNA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1041.  Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PLXNA3 MUTATED 3 6 7
PLXNA3 WILD-TYPE 67 114 93
'PLXNA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S1042.  Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PLXNA3 MUTATED 2 1 0 2 2 4 2 3 0
PLXNA3 WILD-TYPE 39 25 30 27 37 65 18 11 22
'PLXNA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00049 (Fisher's exact test), Q value = 0.016

Table S1043.  Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PLXNA3 MUTATED 2 10 4 1
PLXNA3 WILD-TYPE 98 62 68 120

Figure S402.  Get High-res Image Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PLXNA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S1044.  Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PLXNA3 MUTATED 2 1 12 1 1
PLXNA3 WILD-TYPE 57 74 62 118 37

Figure S403.  Get High-res Image Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PLXNA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S1045.  Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PLXNA3 MUTATED 1 13 1 0 2
PLXNA3 WILD-TYPE 50 63 60 71 93

Figure S404.  Get High-res Image Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PLXNA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0278 (Fisher's exact test), Q value = 0.17

Table S1046.  Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PLXNA3 MUTATED 4 4 1 4 2 0 0 2 0
PLXNA3 WILD-TYPE 65 44 38 12 51 20 21 36 50

Figure S405.  Get High-res Image Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PLXNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.95

Table S1047.  Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PLXNA3 MUTATED 0 1 1 1 2 0
PLXNA3 WILD-TYPE 13 15 13 10 9 9
'PLXNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S1048.  Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PLXNA3 MUTATED 0 0 0 1 0 0 4 0 0
PLXNA3 WILD-TYPE 11 7 7 8 8 7 7 9 5

Figure S406.  Get High-res Image Gene #96: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C15ORF52 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0543 (Fisher's exact test), Q value = 0.25

Table S1049.  Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C15ORF52 MUTATED 3 0 0 0 0
C15ORF52 WILD-TYPE 29 18 46 27 23
'C15ORF52 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0372 (Fisher's exact test), Q value = 0.21

Table S1050.  Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C15ORF52 MUTATED 3 0 0
C15ORF52 WILD-TYPE 40 67 36

Figure S407.  Get High-res Image Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'C15ORF52 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S1051.  Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C15ORF52 MUTATED 0 0 12
C15ORF52 WILD-TYPE 42 173 135

Figure S408.  Get High-res Image Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C15ORF52 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00977 (Fisher's exact test), Q value = 0.093

Table S1052.  Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C15ORF52 MUTATED 2 0 7
C15ORF52 WILD-TYPE 60 73 68

Figure S409.  Get High-res Image Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C15ORF52 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S1053.  Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C15ORF52 MUTATED 2 3 4
C15ORF52 WILD-TYPE 68 117 96
'C15ORF52 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S1054.  Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C15ORF52 MUTATED 0 2 0 1 2 3 0 1 0
C15ORF52 WILD-TYPE 41 24 30 28 37 66 20 13 22
'C15ORF52 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S1055.  Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C15ORF52 MUTATED 1 7 1 3
C15ORF52 WILD-TYPE 99 65 71 118

Figure S410.  Get High-res Image Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C15ORF52 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00109 (Fisher's exact test), Q value = 0.026

Table S1056.  Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C15ORF52 MUTATED 0 1 8 1 2
C15ORF52 WILD-TYPE 59 74 66 118 36

Figure S411.  Get High-res Image Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S1057.  Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C15ORF52 MUTATED 1 5 2 0 4
C15ORF52 WILD-TYPE 50 71 59 71 91
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00626 (Fisher's exact test), Q value = 0.074

Table S1058.  Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C15ORF52 MUTATED 2 0 1 4 2 0 1 2 0
C15ORF52 WILD-TYPE 67 48 38 12 51 20 20 36 50

Figure S412.  Get High-res Image Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0916 (Fisher's exact test), Q value = 0.33

Table S1059.  Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C15ORF52 MUTATED 0 0 2 0 2 0
C15ORF52 WILD-TYPE 13 16 12 11 9 9
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0625 (Fisher's exact test), Q value = 0.27

Table S1060.  Gene #97: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C15ORF52 MUTATED 0 0 0 2 2 0 0 0 0
C15ORF52 WILD-TYPE 11 7 7 7 6 7 11 9 5
'PCBP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S1061.  Gene #98: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PCBP1 MUTATED 0 1 1 2 0
PCBP1 WILD-TYPE 32 17 45 25 23
'PCBP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S1062.  Gene #98: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PCBP1 MUTATED 0 3 1
PCBP1 WILD-TYPE 43 64 35
'PCBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S1063.  Gene #98: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PCBP1 MUTATED 1 3 6
PCBP1 WILD-TYPE 41 170 141
'PCBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S1064.  Gene #98: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PCBP1 MUTATED 2 0 4
PCBP1 WILD-TYPE 60 73 71
'PCBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S1065.  Gene #98: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PCBP1 MUTATED 0 3 3
PCBP1 WILD-TYPE 70 117 97
'PCBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S1066.  Gene #98: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PCBP1 MUTATED 0 1 2 0 0 3 0 0 0
PCBP1 WILD-TYPE 41 25 28 29 39 66 20 14 22
'PCBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S1067.  Gene #98: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PCBP1 MUTATED 1 4 2 3
PCBP1 WILD-TYPE 99 68 70 118
'PCBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S1068.  Gene #98: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PCBP1 MUTATED 0 2 4 4 0
PCBP1 WILD-TYPE 59 73 70 115 38
'PCBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00265 (Fisher's exact test), Q value = 0.044

Table S1069.  Gene #98: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PCBP1 MUTATED 0 6 0 3 0
PCBP1 WILD-TYPE 51 70 61 68 95

Figure S413.  Get High-res Image Gene #98: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PCBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.57

Table S1070.  Gene #98: 'PCBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PCBP1 MUTATED 5 1 0 0 0 0 1 0 2
PCBP1 WILD-TYPE 64 47 39 16 53 20 20 38 48
'SLK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S1071.  Gene #99: 'SLK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLK MUTATED 2 0 0 2 0
SLK WILD-TYPE 30 18 46 25 23
'SLK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S1072.  Gene #99: 'SLK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLK MUTATED 2 2 0
SLK WILD-TYPE 41 65 36
'SLK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.4

Table S1073.  Gene #99: 'SLK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLK MUTATED 2 7 14
SLK WILD-TYPE 40 166 133
'SLK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.95

Table S1074.  Gene #99: 'SLK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLK MUTATED 5 8 5
SLK WILD-TYPE 57 65 70
'SLK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S1075.  Gene #99: 'SLK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLK MUTATED 2 8 9
SLK WILD-TYPE 68 112 91
'SLK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1076.  Gene #99: 'SLK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLK MUTATED 3 2 4 2 1 4 0 1 2
SLK WILD-TYPE 38 24 26 27 38 65 20 13 20
'SLK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S1077.  Gene #99: 'SLK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLK MUTATED 5 6 7 5
SLK WILD-TYPE 95 66 65 116
'SLK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S1078.  Gene #99: 'SLK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLK MUTATED 6 5 6 3 3
SLK WILD-TYPE 53 70 68 116 35
'SLK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.27

Table S1079.  Gene #99: 'SLK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLK MUTATED 4 7 5 0 6
SLK WILD-TYPE 47 69 56 71 89
'SLK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.78

Table S1080.  Gene #99: 'SLK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLK MUTATED 3 5 4 2 1 2 1 2 2
SLK WILD-TYPE 66 43 35 14 52 18 20 36 48
'SLK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.94

Table S1081.  Gene #99: 'SLK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLK MUTATED 2 1 0 2 1 1
SLK WILD-TYPE 11 15 14 9 10 8
'SLK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.77

Table S1082.  Gene #99: 'SLK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLK MUTATED 1 1 2 1 0 0 0 2 0
SLK WILD-TYPE 10 6 5 8 8 7 11 7 5
'SMAD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0605 (Fisher's exact test), Q value = 0.26

Table S1083.  Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SMAD4 MUTATED 8 3 3 6 1
SMAD4 WILD-TYPE 24 15 43 21 22
'SMAD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S1084.  Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SMAD4 MUTATED 9 10 2
SMAD4 WILD-TYPE 34 57 34
'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.98

Table S1085.  Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SMAD4 MUTATED 16 54 48
SMAD4 WILD-TYPE 26 119 99
'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S1086.  Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SMAD4 MUTATED 36 30 32
SMAD4 WILD-TYPE 26 43 43
'SMAD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S1087.  Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SMAD4 MUTATED 19 43 40
SMAD4 WILD-TYPE 51 77 60
'SMAD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00491 (Fisher's exact test), Q value = 0.065

Table S1088.  Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SMAD4 MUTATED 16 7 4 9 10 24 12 9 11
SMAD4 WILD-TYPE 25 19 26 20 29 45 8 5 11

Figure S414.  Get High-res Image Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1089.  Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SMAD4 MUTATED 38 22 39 19
SMAD4 WILD-TYPE 62 50 33 102

Figure S415.  Get High-res Image Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1090.  Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SMAD4 MUTATED 31 32 32 15 8
SMAD4 WILD-TYPE 28 43 42 104 30

Figure S416.  Get High-res Image Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1091.  Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SMAD4 MUTATED 25 34 30 12 17
SMAD4 WILD-TYPE 26 42 31 59 78

Figure S417.  Get High-res Image Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1092.  Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SMAD4 MUTATED 31 28 15 5 18 7 1 9 4
SMAD4 WILD-TYPE 38 20 24 11 35 13 20 29 46

Figure S418.  Get High-res Image Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.65

Table S1093.  Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SMAD4 MUTATED 5 11 9 4 5 3
SMAD4 WILD-TYPE 8 5 5 7 6 6
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S1094.  Gene #100: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SMAD4 MUTATED 6 4 3 3 7 3 6 5 0
SMAD4 WILD-TYPE 5 3 4 6 1 4 5 4 5
'XYLT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00147 (Fisher's exact test), Q value = 0.032

Table S1095.  Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
XYLT2 MUTATED 1 1 12
XYLT2 WILD-TYPE 41 172 135

Figure S419.  Get High-res Image Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'XYLT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00884 (Fisher's exact test), Q value = 0.088

Table S1096.  Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
XYLT2 MUTATED 2 1 10
XYLT2 WILD-TYPE 60 72 65

Figure S420.  Get High-res Image Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'XYLT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.97

Table S1097.  Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
XYLT2 MUTATED 2 5 6
XYLT2 WILD-TYPE 68 115 94
'XYLT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.6

Table S1098.  Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
XYLT2 MUTATED 1 1 0 3 0 5 2 0 1
XYLT2 WILD-TYPE 40 25 30 26 39 64 18 14 21
'XYLT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S1099.  Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
XYLT2 MUTATED 0 9 4 1
XYLT2 WILD-TYPE 100 63 68 120

Figure S421.  Get High-res Image Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'XYLT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00062 (Fisher's exact test), Q value = 0.018

Table S1100.  Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
XYLT2 MUTATED 1 1 10 2 0
XYLT2 WILD-TYPE 58 74 64 117 38

Figure S422.  Get High-res Image Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0096

Table S1101.  Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
XYLT2 MUTATED 1 10 0 0 3
XYLT2 WILD-TYPE 50 66 61 71 92

Figure S423.  Get High-res Image Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00107 (Fisher's exact test), Q value = 0.026

Table S1102.  Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
XYLT2 MUTATED 4 2 0 5 0 0 1 1 1
XYLT2 WILD-TYPE 65 46 39 11 53 20 20 37 49

Figure S424.  Get High-res Image Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.19

Table S1103.  Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
XYLT2 MUTATED 0 1 0 0 3 0
XYLT2 WILD-TYPE 13 15 14 11 8 9

Figure S425.  Get High-res Image Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1104.  Gene #101: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
XYLT2 MUTATED 0 0 0 1 1 1 1 0 0
XYLT2 WILD-TYPE 11 7 7 8 7 6 10 9 5
'FAHD2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.1

Table S1105.  Gene #102: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAHD2B MUTATED 0 0 6
FAHD2B WILD-TYPE 42 173 141

Figure S426.  Get High-res Image Gene #102: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAHD2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.19

Table S1106.  Gene #102: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAHD2B MUTATED 1 0 5
FAHD2B WILD-TYPE 61 73 70

Figure S427.  Get High-res Image Gene #102: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FAHD2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1107.  Gene #102: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAHD2B MUTATED 1 3 2
FAHD2B WILD-TYPE 69 117 98
'FAHD2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S1108.  Gene #102: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAHD2B MUTATED 1 0 0 3 0 2 0 0 0
FAHD2B WILD-TYPE 40 26 30 26 39 67 20 14 22
'FAHD2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00491 (Fisher's exact test), Q value = 0.065

Table S1109.  Gene #102: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAHD2B MUTATED 0 4 2 0
FAHD2B WILD-TYPE 100 68 70 121

Figure S428.  Get High-res Image Gene #102: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FAHD2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00495 (Fisher's exact test), Q value = 0.066

Table S1110.  Gene #102: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAHD2B MUTATED 0 1 5 0 0
FAHD2B WILD-TYPE 59 74 69 119 38

Figure S429.  Get High-res Image Gene #102: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAHD2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.013

Table S1111.  Gene #102: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAHD2B MUTATED 0 6 0 0 0
FAHD2B WILD-TYPE 51 70 61 71 95

Figure S430.  Get High-res Image Gene #102: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FAHD2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.57

Table S1112.  Gene #102: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAHD2B MUTATED 1 3 0 1 1 0 0 0 0
FAHD2B WILD-TYPE 68 45 39 15 52 20 21 38 50
'RSPH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S1113.  Gene #103: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RSPH3 MUTATED 1 2 7
RSPH3 WILD-TYPE 41 171 140
'RSPH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S1114.  Gene #103: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RSPH3 MUTATED 2 1 6
RSPH3 WILD-TYPE 60 72 69
'RSPH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.37

Table S1115.  Gene #103: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RSPH3 MUTATED 0 6 2
RSPH3 WILD-TYPE 70 114 98
'RSPH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S1116.  Gene #103: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RSPH3 MUTATED 0 0 2 1 0 2 1 1 1
RSPH3 WILD-TYPE 41 26 28 28 39 67 19 13 21
'RSPH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S1117.  Gene #103: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RSPH3 MUTATED 3 4 2 1
RSPH3 WILD-TYPE 97 68 70 120
'RSPH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0157 (Fisher's exact test), Q value = 0.12

Table S1118.  Gene #103: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RSPH3 MUTATED 0 3 6 1 0
RSPH3 WILD-TYPE 59 72 68 118 38

Figure S431.  Get High-res Image Gene #103: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RSPH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0888 (Fisher's exact test), Q value = 0.32

Table S1119.  Gene #103: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RSPH3 MUTATED 2 5 2 0 1
RSPH3 WILD-TYPE 49 71 59 71 94
'RSPH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S1120.  Gene #103: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RSPH3 MUTATED 1 2 0 3 3 1 0 0 0
RSPH3 WILD-TYPE 68 46 39 13 50 19 21 38 50

Figure S432.  Get High-res Image Gene #103: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RSPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S1121.  Gene #103: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RSPH3 MUTATED 2 0 0 0 3 0
RSPH3 WILD-TYPE 11 16 14 11 8 9

Figure S433.  Get High-res Image Gene #103: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RSPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0528 (Fisher's exact test), Q value = 0.25

Table S1122.  Gene #103: 'RSPH3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RSPH3 MUTATED 0 0 0 3 0 0 1 0 1
RSPH3 WILD-TYPE 11 7 7 6 8 7 10 9 4
'PKD2L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.9

Table S1123.  Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PKD2L1 MUTATED 3 0 1 1 1
PKD2L1 WILD-TYPE 29 18 45 26 22
'PKD2L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S1124.  Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PKD2L1 MUTATED 2 2 2
PKD2L1 WILD-TYPE 41 65 34
'PKD2L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 0.021

Table S1125.  Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PKD2L1 MUTATED 3 3 17
PKD2L1 WILD-TYPE 39 170 130

Figure S434.  Get High-res Image Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PKD2L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.011

Table S1126.  Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PKD2L1 MUTATED 4 0 12
PKD2L1 WILD-TYPE 58 73 63

Figure S435.  Get High-res Image Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PKD2L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S1127.  Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PKD2L1 MUTATED 5 11 5
PKD2L1 WILD-TYPE 65 109 95
'PKD2L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S1128.  Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PKD2L1 MUTATED 2 1 4 1 2 5 3 2 1
PKD2L1 WILD-TYPE 39 25 26 28 37 64 17 12 21
'PKD2L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0014 (Fisher's exact test), Q value = 0.031

Table S1129.  Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PKD2L1 MUTATED 2 12 2 7
PKD2L1 WILD-TYPE 98 60 70 114

Figure S436.  Get High-res Image Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PKD2L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S1130.  Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PKD2L1 MUTATED 1 4 11 4 3
PKD2L1 WILD-TYPE 58 71 63 115 35

Figure S437.  Get High-res Image Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PKD2L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.14

Table S1131.  Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PKD2L1 MUTATED 2 11 2 1 7
PKD2L1 WILD-TYPE 49 65 59 70 88

Figure S438.  Get High-res Image Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PKD2L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00512 (Fisher's exact test), Q value = 0.067

Table S1132.  Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PKD2L1 MUTATED 4 2 1 6 2 2 0 4 2
PKD2L1 WILD-TYPE 65 46 38 10 51 18 21 34 48

Figure S439.  Get High-res Image Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PKD2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S1133.  Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PKD2L1 MUTATED 0 1 1 0 3 0
PKD2L1 WILD-TYPE 13 15 13 11 8 9
'PKD2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S1134.  Gene #104: 'PKD2L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PKD2L1 MUTATED 0 0 0 2 1 1 1 0 0
PKD2L1 WILD-TYPE 11 7 7 7 7 6 10 9 5
'CDK12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S1135.  Gene #105: 'CDK12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CDK12 MUTATED 3 0 2 2 0
CDK12 WILD-TYPE 29 18 44 25 23
'CDK12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.92

Table S1136.  Gene #105: 'CDK12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CDK12 MUTATED 3 2 2
CDK12 WILD-TYPE 40 65 34
'CDK12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00171 (Fisher's exact test), Q value = 0.034

Table S1137.  Gene #105: 'CDK12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CDK12 MUTATED 0 8 20
CDK12 WILD-TYPE 42 165 127

Figure S440.  Get High-res Image Gene #105: 'CDK12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDK12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S1138.  Gene #105: 'CDK12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CDK12 MUTATED 5 4 12
CDK12 WILD-TYPE 57 69 63
'CDK12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S1139.  Gene #105: 'CDK12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CDK12 MUTATED 6 9 8
CDK12 WILD-TYPE 64 111 92
'CDK12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S1140.  Gene #105: 'CDK12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CDK12 MUTATED 2 2 3 2 4 7 2 1 0
CDK12 WILD-TYPE 39 24 27 27 35 62 18 13 22
'CDK12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.12

Table S1141.  Gene #105: 'CDK12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CDK12 MUTATED 6 13 4 6
CDK12 WILD-TYPE 94 59 68 115

Figure S441.  Get High-res Image Gene #105: 'CDK12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CDK12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S1142.  Gene #105: 'CDK12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CDK12 MUTATED 2 6 13 5 3
CDK12 WILD-TYPE 57 69 61 114 35

Figure S442.  Get High-res Image Gene #105: 'CDK12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDK12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00568 (Fisher's exact test), Q value = 0.071

Table S1143.  Gene #105: 'CDK12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CDK12 MUTATED 4 13 2 1 8
CDK12 WILD-TYPE 47 63 59 70 87

Figure S443.  Get High-res Image Gene #105: 'CDK12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CDK12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S1144.  Gene #105: 'CDK12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CDK12 MUTATED 6 4 1 4 3 3 2 4 1
CDK12 WILD-TYPE 63 44 38 12 50 17 19 34 49
'CDK12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S1145.  Gene #105: 'CDK12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CDK12 MUTATED 0 0 1 1 2 0
CDK12 WILD-TYPE 13 16 13 10 9 9
'CDK12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S1146.  Gene #105: 'CDK12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CDK12 MUTATED 0 0 1 1 1 0 1 0 0
CDK12 WILD-TYPE 11 7 6 8 7 7 10 9 5
'CASP8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S1147.  Gene #106: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CASP8 MUTATED 8 0 0 1 0
CASP8 WILD-TYPE 24 18 46 26 23

Figure S444.  Get High-res Image Gene #106: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CASP8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S1148.  Gene #106: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CASP8 MUTATED 9 0 0
CASP8 WILD-TYPE 34 67 36

Figure S445.  Get High-res Image Gene #106: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S1149.  Gene #106: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CASP8 MUTATED 1 1 15
CASP8 WILD-TYPE 41 172 132

Figure S446.  Get High-res Image Gene #106: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.73

Table S1150.  Gene #106: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CASP8 MUTATED 2 1 4
CASP8 WILD-TYPE 60 72 71
'CASP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1151.  Gene #106: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CASP8 MUTATED 3 5 6
CASP8 WILD-TYPE 67 115 94
'CASP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.56

Table S1152.  Gene #106: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CASP8 MUTATED 2 1 1 0 6 3 1 0 0
CASP8 WILD-TYPE 39 25 29 29 33 66 19 14 22
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.078 (Fisher's exact test), Q value = 0.3

Table S1153.  Gene #106: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CASP8 MUTATED 1 3 3 10
CASP8 WILD-TYPE 99 69 69 111
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S1154.  Gene #106: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CASP8 MUTATED 2 1 3 2 9
CASP8 WILD-TYPE 57 74 71 117 29

Figure S447.  Get High-res Image Gene #106: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00805 (Fisher's exact test), Q value = 0.084

Table S1155.  Gene #106: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CASP8 MUTATED 0 1 3 1 10
CASP8 WILD-TYPE 51 75 58 70 85

Figure S448.  Get High-res Image Gene #106: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S1156.  Gene #106: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CASP8 MUTATED 1 2 0 0 2 1 0 9 0
CASP8 WILD-TYPE 68 46 39 16 51 19 21 29 50

Figure S449.  Get High-res Image Gene #106: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KCNK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.91

Table S1157.  Gene #107: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KCNK1 MUTATED 2 4 4
KCNK1 WILD-TYPE 40 169 143
'KCNK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1158.  Gene #107: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KCNK1 MUTATED 3 3 3
KCNK1 WILD-TYPE 59 70 72
'KCNK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S1159.  Gene #107: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KCNK1 MUTATED 2 3 4
KCNK1 WILD-TYPE 68 117 96
'KCNK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 0.98

Table S1160.  Gene #107: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KCNK1 MUTATED 0 0 1 2 2 2 1 0 1
KCNK1 WILD-TYPE 41 26 29 27 37 67 19 14 21
'KCNK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S1161.  Gene #107: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KCNK1 MUTATED 5 2 2 1
KCNK1 WILD-TYPE 95 70 70 120
'KCNK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.039 (Fisher's exact test), Q value = 0.21

Table S1162.  Gene #107: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KCNK1 MUTATED 4 2 3 0 1
KCNK1 WILD-TYPE 55 73 71 119 37

Figure S450.  Get High-res Image Gene #107: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KCNK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.28

Table S1163.  Gene #107: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KCNK1 MUTATED 1 4 4 0 1
KCNK1 WILD-TYPE 50 72 57 71 94
'KCNK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 0.78

Table S1164.  Gene #107: 'KCNK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KCNK1 MUTATED 2 1 1 2 3 0 0 0 1
KCNK1 WILD-TYPE 67 47 38 14 50 20 21 38 49
'PTK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S1165.  Gene #108: 'PTK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PTK2 MUTATED 2 0 0 2 0
PTK2 WILD-TYPE 30 18 46 25 23
'PTK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S1166.  Gene #108: 'PTK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PTK2 MUTATED 3 1 0
PTK2 WILD-TYPE 40 66 36
'PTK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.018

Table S1167.  Gene #108: 'PTK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTK2 MUTATED 0 4 17
PTK2 WILD-TYPE 42 169 130

Figure S451.  Get High-res Image Gene #108: 'PTK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.26

Table S1168.  Gene #108: 'PTK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTK2 MUTATED 5 2 10
PTK2 WILD-TYPE 57 71 65
'PTK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S1169.  Gene #108: 'PTK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTK2 MUTATED 1 10 7
PTK2 WILD-TYPE 69 110 93
'PTK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.59

Table S1170.  Gene #108: 'PTK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTK2 MUTATED 1 3 2 4 0 4 1 1 2
PTK2 WILD-TYPE 40 23 28 25 39 65 19 13 20
'PTK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00756 (Fisher's exact test), Q value = 0.081

Table S1171.  Gene #108: 'PTK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTK2 MUTATED 2 10 5 4
PTK2 WILD-TYPE 98 62 67 117

Figure S452.  Get High-res Image Gene #108: 'PTK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00528 (Fisher's exact test), Q value = 0.068

Table S1172.  Gene #108: 'PTK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTK2 MUTATED 1 6 10 2 2
PTK2 WILD-TYPE 58 69 64 117 36

Figure S453.  Get High-res Image Gene #108: 'PTK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S1173.  Gene #108: 'PTK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTK2 MUTATED 5 8 1 3 4
PTK2 WILD-TYPE 46 68 60 68 91
'PTK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S1174.  Gene #108: 'PTK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTK2 MUTATED 3 4 1 1 5 3 1 2 1
PTK2 WILD-TYPE 66 44 38 15 48 17 20 36 49
'PTK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S1175.  Gene #108: 'PTK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PTK2 MUTATED 0 0 1 1 2 1
PTK2 WILD-TYPE 13 16 13 10 9 8
'PTK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 0.97

Table S1176.  Gene #108: 'PTK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PTK2 MUTATED 0 0 1 0 1 0 2 1 0
PTK2 WILD-TYPE 11 7 6 9 7 7 9 8 5
'FYN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S1177.  Gene #109: 'FYN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FYN MUTATED 2 0 0 2 0
FYN WILD-TYPE 30 18 46 25 23
'FYN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1178.  Gene #109: 'FYN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FYN MUTATED 2 1 1
FYN WILD-TYPE 41 66 35
'FYN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00878 (Fisher's exact test), Q value = 0.088

Table S1179.  Gene #109: 'FYN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FYN MUTATED 1 2 11
FYN WILD-TYPE 41 171 136

Figure S454.  Get High-res Image Gene #109: 'FYN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FYN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1180.  Gene #109: 'FYN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FYN MUTATED 3 3 4
FYN WILD-TYPE 59 70 71
'FYN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.46

Table S1181.  Gene #109: 'FYN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FYN MUTATED 6 3 4
FYN WILD-TYPE 64 117 96
'FYN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.58

Table S1182.  Gene #109: 'FYN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FYN MUTATED 1 1 1 1 2 2 3 2 0
FYN WILD-TYPE 40 25 29 28 37 67 17 12 22
'FYN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0981 (Fisher's exact test), Q value = 0.34

Table S1183.  Gene #109: 'FYN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FYN MUTATED 1 6 2 6
FYN WILD-TYPE 99 66 70 115
'FYN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S1184.  Gene #109: 'FYN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FYN MUTATED 0 3 6 4 2
FYN WILD-TYPE 59 72 68 115 36
'FYN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S1185.  Gene #109: 'FYN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FYN MUTATED 3 4 2 2 4
FYN WILD-TYPE 48 72 59 69 91
'FYN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S1186.  Gene #109: 'FYN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FYN MUTATED 2 1 0 1 3 2 3 1 2
FYN WILD-TYPE 67 47 39 15 50 18 18 37 48
'CDX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.19

Table S1187.  Gene #110: 'CDX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CDX2 MUTATED 1 0 5
CDX2 WILD-TYPE 41 173 142

Figure S455.  Get High-res Image Gene #110: 'CDX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0818 (Fisher's exact test), Q value = 0.31

Table S1188.  Gene #110: 'CDX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CDX2 MUTATED 1 0 4
CDX2 WILD-TYPE 61 73 71
'CDX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1189.  Gene #110: 'CDX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CDX2 MUTATED 1 3 2
CDX2 WILD-TYPE 69 117 98
'CDX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1190.  Gene #110: 'CDX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CDX2 MUTATED 0 1 0 1 2 2 0 0 0
CDX2 WILD-TYPE 41 25 30 28 37 67 20 14 22
'CDX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.18

Table S1191.  Gene #110: 'CDX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CDX2 MUTATED 0 4 1 1
CDX2 WILD-TYPE 100 68 71 120

Figure S456.  Get High-res Image Gene #110: 'CDX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CDX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00223 (Fisher's exact test), Q value = 0.04

Table S1192.  Gene #110: 'CDX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CDX2 MUTATED 0 0 5 0 1
CDX2 WILD-TYPE 59 75 69 119 37

Figure S457.  Get High-res Image Gene #110: 'CDX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S1193.  Gene #110: 'CDX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CDX2 MUTATED 0 5 0 0 1
CDX2 WILD-TYPE 51 71 61 71 94

Figure S458.  Get High-res Image Gene #110: 'CDX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CDX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S1194.  Gene #110: 'CDX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CDX2 MUTATED 2 1 0 2 0 0 0 1 0
CDX2 WILD-TYPE 67 47 39 14 53 20 21 37 50
'KLK10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S1195.  Gene #111: 'KLK10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KLK10 MUTATED 2 0 4
KLK10 WILD-TYPE 40 173 143

Figure S459.  Get High-res Image Gene #111: 'KLK10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KLK10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.98

Table S1196.  Gene #111: 'KLK10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KLK10 MUTATED 2 1 3
KLK10 WILD-TYPE 60 72 72
'KLK10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0547 (Fisher's exact test), Q value = 0.25

Table S1197.  Gene #111: 'KLK10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KLK10 MUTATED 0 1 5
KLK10 WILD-TYPE 70 119 95
'KLK10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S1198.  Gene #111: 'KLK10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KLK10 MUTATED 1 0 0 1 0 3 1 0 0
KLK10 WILD-TYPE 40 26 30 28 39 66 19 14 22
'KLK10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.63

Table S1199.  Gene #111: 'KLK10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KLK10 MUTATED 1 3 2 1
KLK10 WILD-TYPE 99 69 70 120
'KLK10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0569 (Fisher's exact test), Q value = 0.25

Table S1200.  Gene #111: 'KLK10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KLK10 MUTATED 1 1 4 0 1
KLK10 WILD-TYPE 58 74 70 119 37
'KLK10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S1201.  Gene #111: 'KLK10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KLK10 MUTATED 1 4 1 0 1
KLK10 WILD-TYPE 50 72 60 71 94
'KLK10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00208 (Fisher's exact test), Q value = 0.039

Table S1202.  Gene #111: 'KLK10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KLK10 MUTATED 0 1 2 3 0 0 0 1 0
KLK10 WILD-TYPE 69 47 37 13 53 20 21 37 50

Figure S460.  Get High-res Image Gene #111: 'KLK10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KLK10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S1203.  Gene #111: 'KLK10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KLK10 MUTATED 1 1 0 0 1 0
KLK10 WILD-TYPE 12 15 14 11 10 9
'KLK10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S1204.  Gene #111: 'KLK10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KLK10 MUTATED 0 1 0 1 0 0 1 0 0
KLK10 WILD-TYPE 11 6 7 8 8 7 10 9 5
'TPM4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S1205.  Gene #112: 'TPM4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TPM4 MUTATED 2 0 0 1 0
TPM4 WILD-TYPE 30 18 46 26 23
'TPM4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0383 (Fisher's exact test), Q value = 0.21

Table S1206.  Gene #112: 'TPM4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TPM4 MUTATED 3 0 0
TPM4 WILD-TYPE 40 67 36

Figure S461.  Get High-res Image Gene #112: 'TPM4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TPM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.21

Table S1207.  Gene #112: 'TPM4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TPM4 MUTATED 0 1 7
TPM4 WILD-TYPE 42 172 140

Figure S462.  Get High-res Image Gene #112: 'TPM4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TPM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1208.  Gene #112: 'TPM4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TPM4 MUTATED 2 1 2
TPM4 WILD-TYPE 60 72 73
'TPM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S1209.  Gene #112: 'TPM4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TPM4 MUTATED 0 3 2
TPM4 WILD-TYPE 70 117 98
'TPM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S1210.  Gene #112: 'TPM4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TPM4 MUTATED 0 1 0 1 1 2 0 0 0
TPM4 WILD-TYPE 41 25 30 28 38 67 20 14 22
'TPM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1211.  Gene #112: 'TPM4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TPM4 MUTATED 1 2 1 4
TPM4 WILD-TYPE 99 70 71 117
'TPM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0471 (Fisher's exact test), Q value = 0.23

Table S1212.  Gene #112: 'TPM4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TPM4 MUTATED 0 1 3 1 3
TPM4 WILD-TYPE 59 74 71 118 35

Figure S463.  Get High-res Image Gene #112: 'TPM4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TPM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.54

Table S1213.  Gene #112: 'TPM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TPM4 MUTATED 0 4 0 1 3
TPM4 WILD-TYPE 51 72 61 70 92
'TPM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0292 (Fisher's exact test), Q value = 0.18

Table S1214.  Gene #112: 'TPM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TPM4 MUTATED 0 1 1 2 0 0 0 3 1
TPM4 WILD-TYPE 69 47 38 14 53 20 21 35 49

Figure S464.  Get High-res Image Gene #112: 'TPM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'UQCRC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S1215.  Gene #113: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UQCRC2 MUTATED 0 4 4
UQCRC2 WILD-TYPE 42 169 143
'UQCRC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S1216.  Gene #113: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UQCRC2 MUTATED 0 3 4
UQCRC2 WILD-TYPE 62 70 71
'UQCRC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S1217.  Gene #113: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UQCRC2 MUTATED 1 2 3
UQCRC2 WILD-TYPE 69 118 97
'UQCRC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.91

Table S1218.  Gene #113: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UQCRC2 MUTATED 2 0 2 0 0 2 0 0 0
UQCRC2 WILD-TYPE 39 26 28 29 39 67 20 14 22
'UQCRC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S1219.  Gene #113: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UQCRC2 MUTATED 1 4 1 2
UQCRC2 WILD-TYPE 99 68 71 119
'UQCRC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S1220.  Gene #113: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UQCRC2 MUTATED 2 2 2 2 0
UQCRC2 WILD-TYPE 57 73 72 117 38
'UQCRC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S1221.  Gene #113: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UQCRC2 MUTATED 2 4 1 0 1
UQCRC2 WILD-TYPE 49 72 60 71 94
'UQCRC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S1222.  Gene #113: 'UQCRC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UQCRC2 MUTATED 2 1 0 1 1 2 1 0 0
UQCRC2 WILD-TYPE 67 47 39 15 52 18 20 38 50
'PIK3IP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S1223.  Gene #114: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PIK3IP1 MUTATED 0 3 5
PIK3IP1 WILD-TYPE 42 170 142
'PIK3IP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.73

Table S1224.  Gene #114: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PIK3IP1 MUTATED 2 1 4
PIK3IP1 WILD-TYPE 60 72 71
'PIK3IP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S1225.  Gene #114: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PIK3IP1 MUTATED 1 2 4
PIK3IP1 WILD-TYPE 69 118 96
'PIK3IP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S1226.  Gene #114: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PIK3IP1 MUTATED 1 0 0 0 0 4 2 0 0
PIK3IP1 WILD-TYPE 40 26 30 29 39 65 18 14 22
'PIK3IP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00933 (Fisher's exact test), Q value = 0.091

Table S1227.  Gene #114: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PIK3IP1 MUTATED 0 5 2 1
PIK3IP1 WILD-TYPE 100 67 70 120

Figure S465.  Get High-res Image Gene #114: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PIK3IP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0882 (Fisher's exact test), Q value = 0.32

Table S1228.  Gene #114: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PIK3IP1 MUTATED 1 1 5 1 0
PIK3IP1 WILD-TYPE 58 74 69 118 38
'PIK3IP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S1229.  Gene #114: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PIK3IP1 MUTATED 1 5 0 1 1
PIK3IP1 WILD-TYPE 50 71 61 70 94
'PIK3IP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S1230.  Gene #114: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PIK3IP1 MUTATED 2 1 0 3 0 1 0 0 1
PIK3IP1 WILD-TYPE 67 47 39 13 53 19 21 38 49

Figure S466.  Get High-res Image Gene #114: 'PIK3IP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'USP24 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S1231.  Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
USP24 MUTATED 2 1 0 2 0
USP24 WILD-TYPE 30 17 46 25 23
'USP24 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0671 (Fisher's exact test), Q value = 0.28

Table S1232.  Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
USP24 MUTATED 4 1 0
USP24 WILD-TYPE 39 66 36
'USP24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S1233.  Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
USP24 MUTATED 4 7 18
USP24 WILD-TYPE 38 166 129

Figure S467.  Get High-res Image Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.16

Table S1234.  Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
USP24 MUTATED 6 4 15
USP24 WILD-TYPE 56 69 60

Figure S468.  Get High-res Image Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'USP24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.093 (Fisher's exact test), Q value = 0.33

Table S1235.  Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
USP24 MUTATED 2 14 10
USP24 WILD-TYPE 68 106 90
'USP24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.95

Table S1236.  Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
USP24 MUTATED 3 3 2 4 1 7 3 2 1
USP24 WILD-TYPE 38 23 28 25 38 62 17 12 21
'USP24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00126 (Fisher's exact test), Q value = 0.029

Table S1237.  Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
USP24 MUTATED 6 15 3 6
USP24 WILD-TYPE 94 57 69 115

Figure S469.  Get High-res Image Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'USP24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0081

Table S1238.  Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
USP24 MUTATED 4 4 16 3 3
USP24 WILD-TYPE 55 71 58 116 35

Figure S470.  Get High-res Image Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S1239.  Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
USP24 MUTATED 5 13 2 5 4
USP24 WILD-TYPE 46 63 59 66 91

Figure S471.  Get High-res Image Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'USP24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.002 (Fisher's exact test), Q value = 0.038

Table S1240.  Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
USP24 MUTATED 9 1 3 6 4 3 1 1 1
USP24 WILD-TYPE 60 47 36 10 49 17 20 37 49

Figure S472.  Get High-res Image Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'USP24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S1241.  Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
USP24 MUTATED 2 1 2 0 3 1
USP24 WILD-TYPE 11 15 12 11 8 8
'USP24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S1242.  Gene #115: 'USP24 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
USP24 MUTATED 0 1 0 2 1 1 1 3 0
USP24 WILD-TYPE 11 6 7 7 7 6 10 6 5
'OR5V1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S1243.  Gene #116: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR5V1 MUTATED 0 7 7
OR5V1 WILD-TYPE 42 166 140
'OR5V1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.89

Table S1244.  Gene #116: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR5V1 MUTATED 3 3 6
OR5V1 WILD-TYPE 59 70 69
'OR5V1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0677 (Fisher's exact test), Q value = 0.28

Table S1245.  Gene #116: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR5V1 MUTATED 0 3 6
OR5V1 WILD-TYPE 70 117 94
'OR5V1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S1246.  Gene #116: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR5V1 MUTATED 3 0 1 0 0 3 0 1 1
OR5V1 WILD-TYPE 38 26 29 29 39 66 20 13 21
'OR5V1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S1247.  Gene #116: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR5V1 MUTATED 4 5 3 2
OR5V1 WILD-TYPE 96 67 69 119
'OR5V1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S1248.  Gene #116: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR5V1 MUTATED 4 3 5 1 1
OR5V1 WILD-TYPE 55 72 69 118 37
'OR5V1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S1249.  Gene #116: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR5V1 MUTATED 3 6 3 1 1
OR5V1 WILD-TYPE 48 70 58 70 94
'OR5V1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S1250.  Gene #116: 'OR5V1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR5V1 MUTATED 5 3 0 2 1 1 1 1 0
OR5V1 WILD-TYPE 64 45 39 14 52 19 20 37 50
'GGTLC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S1251.  Gene #117: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GGTLC2 MUTATED 0 3 4
GGTLC2 WILD-TYPE 42 170 143
'GGTLC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S1252.  Gene #117: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GGTLC2 MUTATED 0 2 5
GGTLC2 WILD-TYPE 62 71 70
'GGTLC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S1253.  Gene #117: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GGTLC2 MUTATED 0 2 4
GGTLC2 WILD-TYPE 70 118 96
'GGTLC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S1254.  Gene #117: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GGTLC2 MUTATED 0 0 1 1 0 4 0 0 0
GGTLC2 WILD-TYPE 41 26 29 28 39 65 20 14 22
'GGTLC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00323 (Fisher's exact test), Q value = 0.05

Table S1255.  Gene #117: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GGTLC2 MUTATED 2 5 0 0
GGTLC2 WILD-TYPE 98 67 72 121

Figure S473.  Get High-res Image Gene #117: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GGTLC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S1256.  Gene #117: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GGTLC2 MUTATED 0 3 4 0 0
GGTLC2 WILD-TYPE 59 72 70 119 38

Figure S474.  Get High-res Image Gene #117: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GGTLC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S1257.  Gene #117: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GGTLC2 MUTATED 1 5 0 1 0
GGTLC2 WILD-TYPE 50 71 61 70 95

Figure S475.  Get High-res Image Gene #117: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GGTLC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00581 (Fisher's exact test), Q value = 0.072

Table S1258.  Gene #117: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GGTLC2 MUTATED 5 0 0 2 0 0 0 0 0
GGTLC2 WILD-TYPE 64 48 39 14 53 20 21 38 50

Figure S476.  Get High-res Image Gene #117: 'GGTLC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZFYVE26 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00863 (Fisher's exact test), Q value = 0.087

Table S1259.  Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZFYVE26 MUTATED 5 0 0 2 0
ZFYVE26 WILD-TYPE 27 18 46 25 23

Figure S477.  Get High-res Image Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZFYVE26 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00209 (Fisher's exact test), Q value = 0.039

Table S1260.  Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZFYVE26 MUTATED 6 0 1
ZFYVE26 WILD-TYPE 37 67 35

Figure S478.  Get High-res Image Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZFYVE26 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00061 (Fisher's exact test), Q value = 0.018

Table S1261.  Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZFYVE26 MUTATED 2 5 21
ZFYVE26 WILD-TYPE 40 168 126

Figure S479.  Get High-res Image Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZFYVE26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S1262.  Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZFYVE26 MUTATED 6 3 13
ZFYVE26 WILD-TYPE 56 70 62

Figure S480.  Get High-res Image Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZFYVE26 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S1263.  Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZFYVE26 MUTATED 2 10 11
ZFYVE26 WILD-TYPE 68 110 89
'ZFYVE26 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1264.  Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZFYVE26 MUTATED 2 1 1 3 3 8 2 2 1
ZFYVE26 WILD-TYPE 39 25 29 26 36 61 18 12 21
'ZFYVE26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0823 (Fisher's exact test), Q value = 0.31

Table S1265.  Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZFYVE26 MUTATED 5 11 5 7
ZFYVE26 WILD-TYPE 95 61 67 114
'ZFYVE26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S1266.  Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZFYVE26 MUTATED 2 7 12 1 6
ZFYVE26 WILD-TYPE 57 68 62 118 32

Figure S481.  Get High-res Image Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZFYVE26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 0.16

Table S1267.  Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZFYVE26 MUTATED 3 13 3 2 6
ZFYVE26 WILD-TYPE 48 63 58 69 89

Figure S482.  Get High-res Image Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ZFYVE26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 9e-04 (Fisher's exact test), Q value = 0.023

Table S1268.  Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZFYVE26 MUTATED 6 2 2 7 3 1 0 5 1
ZFYVE26 WILD-TYPE 63 46 37 9 50 19 21 33 49

Figure S483.  Get High-res Image Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZFYVE26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.42

Table S1269.  Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZFYVE26 MUTATED 1 2 2 0 4 0
ZFYVE26 WILD-TYPE 12 14 12 11 7 9
'ZFYVE26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S1270.  Gene #118: 'ZFYVE26 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZFYVE26 MUTATED 2 1 0 4 1 0 1 0 0
ZFYVE26 WILD-TYPE 9 6 7 5 7 7 10 9 5
'MLLT6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S1271.  Gene #119: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MLLT6 MUTATED 2 1 0 0 0
MLLT6 WILD-TYPE 30 17 46 27 23
'MLLT6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S1272.  Gene #119: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MLLT6 MUTATED 2 1 0
MLLT6 WILD-TYPE 41 66 36
'MLLT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S1273.  Gene #119: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MLLT6 MUTATED 0 4 12
MLLT6 WILD-TYPE 42 169 135

Figure S484.  Get High-res Image Gene #119: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLLT6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.94

Table S1274.  Gene #119: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MLLT6 MUTATED 5 3 5
MLLT6 WILD-TYPE 57 70 70
'MLLT6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.32

Table S1275.  Gene #119: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MLLT6 MUTATED 1 5 9
MLLT6 WILD-TYPE 69 115 91
'MLLT6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S1276.  Gene #119: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MLLT6 MUTATED 0 0 1 1 2 6 3 0 2
MLLT6 WILD-TYPE 41 26 29 28 37 63 17 14 20
'MLLT6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.79

Table S1277.  Gene #119: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MLLT6 MUTATED 4 4 5 3
MLLT6 WILD-TYPE 96 68 67 118
'MLLT6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S1278.  Gene #119: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MLLT6 MUTATED 2 2 9 2 1
MLLT6 WILD-TYPE 57 73 65 117 37

Figure S485.  Get High-res Image Gene #119: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MLLT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 0.18

Table S1279.  Gene #119: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MLLT6 MUTATED 2 8 2 0 3
MLLT6 WILD-TYPE 49 68 59 71 92

Figure S486.  Get High-res Image Gene #119: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MLLT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S1280.  Gene #119: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MLLT6 MUTATED 4 5 0 1 2 0 1 2 0
MLLT6 WILD-TYPE 65 43 39 15 51 20 20 36 50
'MLLT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S1281.  Gene #119: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MLLT6 MUTATED 1 0 1 0 2 0
MLLT6 WILD-TYPE 12 16 13 11 9 9
'MLLT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S1282.  Gene #119: 'MLLT6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MLLT6 MUTATED 0 0 1 0 0 2 1 0 0
MLLT6 WILD-TYPE 11 7 6 9 8 5 10 9 5
'RNF128 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00138 (Fisher's exact test), Q value = 0.031

Table S1283.  Gene #120: 'RNF128 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RNF128 MUTATED 1 1 12
RNF128 WILD-TYPE 41 172 135

Figure S487.  Get High-res Image Gene #120: 'RNF128 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNF128 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.18

Table S1284.  Gene #120: 'RNF128 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RNF128 MUTATED 4 1 9
RNF128 WILD-TYPE 58 72 66

Figure S488.  Get High-res Image Gene #120: 'RNF128 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RNF128 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S1285.  Gene #120: 'RNF128 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RNF128 MUTATED 1 5 6
RNF128 WILD-TYPE 69 115 94
'RNF128 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S1286.  Gene #120: 'RNF128 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RNF128 MUTATED 0 1 0 3 2 6 0 0 0
RNF128 WILD-TYPE 41 25 30 26 37 63 20 14 22
'RNF128 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S1287.  Gene #120: 'RNF128 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RNF128 MUTATED 1 8 5 0
RNF128 WILD-TYPE 99 64 67 121

Figure S489.  Get High-res Image Gene #120: 'RNF128 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RNF128 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-04 (Fisher's exact test), Q value = 0.016

Table S1288.  Gene #120: 'RNF128 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RNF128 MUTATED 0 4 9 1 0
RNF128 WILD-TYPE 59 71 65 118 38

Figure S490.  Get High-res Image Gene #120: 'RNF128 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RNF128 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0505 (Fisher's exact test), Q value = 0.24

Table S1289.  Gene #120: 'RNF128 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RNF128 MUTATED 1 7 3 0 3
RNF128 WILD-TYPE 50 69 58 71 92
'RNF128 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S1290.  Gene #120: 'RNF128 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RNF128 MUTATED 4 2 0 2 2 1 0 2 1
RNF128 WILD-TYPE 65 46 39 14 51 19 21 36 49
'RNF128 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S1291.  Gene #120: 'RNF128 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RNF128 MUTATED 0 0 2 0 1 0
RNF128 WILD-TYPE 13 16 12 11 10 9
'RNF128 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.99

Table S1292.  Gene #120: 'RNF128 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RNF128 MUTATED 0 0 1 0 1 0 1 0 0
RNF128 WILD-TYPE 11 7 6 9 7 7 10 9 5
'TNMD MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1293.  Gene #121: 'TNMD MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TNMD MUTATED 2 0 1 1 0
TNMD WILD-TYPE 30 18 45 26 23
'TNMD MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0525 (Fisher's exact test), Q value = 0.25

Table S1294.  Gene #121: 'TNMD MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TNMD MUTATED 3 0 1
TNMD WILD-TYPE 40 67 35
'TNMD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.16

Table S1295.  Gene #121: 'TNMD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TNMD MUTATED 1 1 8
TNMD WILD-TYPE 41 172 139

Figure S491.  Get High-res Image Gene #121: 'TNMD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TNMD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.24

Table S1296.  Gene #121: 'TNMD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TNMD MUTATED 2 0 5
TNMD WILD-TYPE 60 73 70

Figure S492.  Get High-res Image Gene #121: 'TNMD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TNMD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S1297.  Gene #121: 'TNMD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TNMD MUTATED 2 3 4
TNMD WILD-TYPE 68 117 96
'TNMD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.99

Table S1298.  Gene #121: 'TNMD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TNMD MUTATED 1 0 0 2 1 3 1 1 0
TNMD WILD-TYPE 40 26 30 27 38 66 19 13 22
'TNMD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 0.24

Table S1299.  Gene #121: 'TNMD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TNMD MUTATED 0 5 2 4
TNMD WILD-TYPE 100 67 70 117

Figure S493.  Get High-res Image Gene #121: 'TNMD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TNMD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.012

Table S1300.  Gene #121: 'TNMD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TNMD MUTATED 0 0 7 1 3
TNMD WILD-TYPE 59 75 67 118 35

Figure S494.  Get High-res Image Gene #121: 'TNMD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TNMD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S1301.  Gene #121: 'TNMD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TNMD MUTATED 0 4 2 0 5
TNMD WILD-TYPE 51 72 59 71 90
'TNMD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S1302.  Gene #121: 'TNMD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TNMD MUTATED 3 2 0 1 1 1 0 3 0
TNMD WILD-TYPE 66 46 39 15 52 19 21 35 50
'TNMD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S1303.  Gene #121: 'TNMD MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TNMD MUTATED 0 0 1 0 2 0
TNMD WILD-TYPE 13 16 13 11 9 9
'TNMD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S1304.  Gene #121: 'TNMD MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TNMD MUTATED 0 0 0 1 1 0 1 0 0
TNMD WILD-TYPE 11 7 7 8 7 7 10 9 5
'GPR174 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S1305.  Gene #122: 'GPR174 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GPR174 MUTATED 1 5 2
GPR174 WILD-TYPE 41 168 145
'GPR174 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S1306.  Gene #122: 'GPR174 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GPR174 MUTATED 3 1 2
GPR174 WILD-TYPE 59 72 73
'GPR174 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00595 (Fisher's exact test), Q value = 0.073

Table S1307.  Gene #122: 'GPR174 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GPR174 MUTATED 5 0 2
GPR174 WILD-TYPE 65 120 98

Figure S495.  Get High-res Image Gene #122: 'GPR174 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GPR174 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S1308.  Gene #122: 'GPR174 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GPR174 MUTATED 2 0 1 0 1 2 0 0 1
GPR174 WILD-TYPE 39 26 29 29 38 67 20 14 21
'GPR174 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S1309.  Gene #122: 'GPR174 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GPR174 MUTATED 2 1 4 1
GPR174 WILD-TYPE 98 71 68 120
'GPR174 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S1310.  Gene #122: 'GPR174 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GPR174 MUTATED 3 1 2 1 1
GPR174 WILD-TYPE 56 74 72 118 37
'GPR174 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1311.  Gene #122: 'GPR174 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GPR174 MUTATED 2 2 1 2 1
GPR174 WILD-TYPE 49 74 60 69 94
'GPR174 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S1312.  Gene #122: 'GPR174 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GPR174 MUTATED 3 2 0 0 1 0 0 1 1
GPR174 WILD-TYPE 66 46 39 16 52 20 21 37 49
'GPR174 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S1313.  Gene #122: 'GPR174 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GPR174 MUTATED 0 0 1 0 1 1
GPR174 WILD-TYPE 13 16 13 11 10 8
'GPR174 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S1314.  Gene #122: 'GPR174 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GPR174 MUTATED 1 0 0 0 1 0 1 0 0
GPR174 WILD-TYPE 10 7 7 9 7 7 10 9 5
'CD58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00152 (Fisher's exact test), Q value = 0.032

Table S1315.  Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CD58 MUTATED 1 1 12
CD58 WILD-TYPE 41 172 135

Figure S496.  Get High-res Image Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CD58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00356 (Fisher's exact test), Q value = 0.053

Table S1316.  Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CD58 MUTATED 4 0 9
CD58 WILD-TYPE 58 73 66

Figure S497.  Get High-res Image Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CD58 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1317.  Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CD58 MUTATED 3 5 4
CD58 WILD-TYPE 67 115 96
'CD58 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.86

Table S1318.  Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CD58 MUTATED 3 1 1 3 0 3 1 0 0
CD58 WILD-TYPE 38 25 29 26 39 66 19 14 22
'CD58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.0087

Table S1319.  Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CD58 MUTATED 0 6 7 1
CD58 WILD-TYPE 100 66 65 120

Figure S498.  Get High-res Image Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CD58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.012

Table S1320.  Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CD58 MUTATED 2 1 10 1 0
CD58 WILD-TYPE 57 74 64 118 38

Figure S499.  Get High-res Image Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CD58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00558 (Fisher's exact test), Q value = 0.071

Table S1321.  Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CD58 MUTATED 0 9 2 1 2
CD58 WILD-TYPE 51 67 59 70 93

Figure S500.  Get High-res Image Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CD58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00101 (Fisher's exact test), Q value = 0.025

Table S1322.  Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CD58 MUTATED 3 5 0 4 0 1 0 0 1
CD58 WILD-TYPE 66 43 39 12 53 19 21 38 49

Figure S501.  Get High-res Image Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CD58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.17

Table S1323.  Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CD58 MUTATED 0 1 2 0 4 0
CD58 WILD-TYPE 13 15 12 11 7 9

Figure S502.  Get High-res Image Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CD58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.37

Table S1324.  Gene #123: 'CD58 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CD58 MUTATED 0 0 0 2 2 0 3 0 0
CD58 WILD-TYPE 11 7 7 7 6 7 8 9 5
'HTR2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S1325.  Gene #124: 'HTR2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HTR2A MUTATED 2 8 9
HTR2A WILD-TYPE 40 165 138
'HTR2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S1326.  Gene #124: 'HTR2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HTR2A MUTATED 4 6 7
HTR2A WILD-TYPE 58 67 68
'HTR2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.15

Table S1327.  Gene #124: 'HTR2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HTR2A MUTATED 0 9 9
HTR2A WILD-TYPE 70 111 91

Figure S503.  Get High-res Image Gene #124: 'HTR2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'HTR2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S1328.  Gene #124: 'HTR2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HTR2A MUTATED 3 0 2 5 1 6 0 1 0
HTR2A WILD-TYPE 38 26 28 24 38 63 20 13 22
'HTR2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S1329.  Gene #124: 'HTR2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HTR2A MUTATED 7 6 4 2
HTR2A WILD-TYPE 93 66 68 119
'HTR2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0227 (Fisher's exact test), Q value = 0.16

Table S1330.  Gene #124: 'HTR2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HTR2A MUTATED 4 6 7 1 1
HTR2A WILD-TYPE 55 69 67 118 37

Figure S504.  Get High-res Image Gene #124: 'HTR2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HTR2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S1331.  Gene #124: 'HTR2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HTR2A MUTATED 5 5 3 4 1
HTR2A WILD-TYPE 46 71 58 67 94
'HTR2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S1332.  Gene #124: 'HTR2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HTR2A MUTATED 7 2 3 1 4 1 0 0 0
HTR2A WILD-TYPE 62 46 36 15 49 19 21 38 50
'HTR2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S1333.  Gene #124: 'HTR2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HTR2A MUTATED 1 1 1 0 1 2
HTR2A WILD-TYPE 12 15 13 11 10 7
'HTR2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S1334.  Gene #124: 'HTR2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HTR2A MUTATED 1 1 0 2 1 0 0 1 0
HTR2A WILD-TYPE 10 6 7 7 7 7 11 8 5
'EHBP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0985 (Fisher's exact test), Q value = 0.34

Table S1335.  Gene #125: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EHBP1 MUTATED 3 0 0 1 0
EHBP1 WILD-TYPE 29 18 46 26 23
'EHBP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0515 (Fisher's exact test), Q value = 0.24

Table S1336.  Gene #125: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EHBP1 MUTATED 3 0 1
EHBP1 WILD-TYPE 40 67 35
'EHBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0867 (Fisher's exact test), Q value = 0.32

Table S1337.  Gene #125: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EHBP1 MUTATED 0 9 13
EHBP1 WILD-TYPE 42 164 134
'EHBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S1338.  Gene #125: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EHBP1 MUTATED 2 7 9
EHBP1 WILD-TYPE 60 66 66
'EHBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S1339.  Gene #125: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EHBP1 MUTATED 5 8 5
EHBP1 WILD-TYPE 65 112 95
'EHBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S1340.  Gene #125: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EHBP1 MUTATED 3 1 1 4 2 4 1 0 2
EHBP1 WILD-TYPE 38 25 29 25 37 65 19 14 20
'EHBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.73

Table S1341.  Gene #125: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EHBP1 MUTATED 7 6 5 4
EHBP1 WILD-TYPE 93 66 67 117
'EHBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00377 (Fisher's exact test), Q value = 0.055

Table S1342.  Gene #125: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EHBP1 MUTATED 2 9 7 1 3
EHBP1 WILD-TYPE 57 66 67 118 35

Figure S505.  Get High-res Image Gene #125: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EHBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0767 (Fisher's exact test), Q value = 0.3

Table S1343.  Gene #125: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EHBP1 MUTATED 4 10 2 2 4
EHBP1 WILD-TYPE 47 66 59 69 91
'EHBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00233 (Fisher's exact test), Q value = 0.041

Table S1344.  Gene #125: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EHBP1 MUTATED 3 3 1 5 7 1 0 2 0
EHBP1 WILD-TYPE 66 45 38 11 46 19 21 36 50

Figure S506.  Get High-res Image Gene #125: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EHBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S1345.  Gene #125: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EHBP1 MUTATED 0 1 0 0 2 1
EHBP1 WILD-TYPE 13 15 14 11 9 8
'EHBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S1346.  Gene #125: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EHBP1 MUTATED 0 1 0 1 1 0 0 1 0
EHBP1 WILD-TYPE 11 6 7 8 7 7 11 8 5
'ZNF583 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1347.  Gene #126: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF583 MUTATED 1 0 1 1 1
ZNF583 WILD-TYPE 31 18 45 26 22
'ZNF583 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.98

Table S1348.  Gene #126: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF583 MUTATED 1 3 0
ZNF583 WILD-TYPE 42 64 36
'ZNF583 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.18

Table S1349.  Gene #126: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF583 MUTATED 1 3 11
ZNF583 WILD-TYPE 41 170 136

Figure S507.  Get High-res Image Gene #126: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF583 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S1350.  Gene #126: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF583 MUTATED 3 2 6
ZNF583 WILD-TYPE 59 71 69
'ZNF583 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S1351.  Gene #126: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF583 MUTATED 1 2 5
ZNF583 WILD-TYPE 69 118 95
'ZNF583 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S1352.  Gene #126: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF583 MUTATED 4 0 1 0 0 3 0 0 0
ZNF583 WILD-TYPE 37 26 29 29 39 66 20 14 22
'ZNF583 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S1353.  Gene #126: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF583 MUTATED 3 4 5 3
ZNF583 WILD-TYPE 97 68 67 118
'ZNF583 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S1354.  Gene #126: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF583 MUTATED 4 1 6 3 1
ZNF583 WILD-TYPE 55 74 68 116 37
'ZNF583 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S1355.  Gene #126: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF583 MUTATED 1 4 6 1 3
ZNF583 WILD-TYPE 50 72 55 70 92
'ZNF583 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S1356.  Gene #126: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF583 MUTATED 1 4 0 3 2 1 1 1 2
ZNF583 WILD-TYPE 68 44 39 13 51 19 20 37 48
'ZNF583 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S1357.  Gene #126: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF583 MUTATED 0 1 2 0 0 0
ZNF583 WILD-TYPE 13 15 12 11 11 9
'ZNF583 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S1358.  Gene #126: 'ZNF583 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF583 MUTATED 0 0 0 0 2 0 1 0 0
ZNF583 WILD-TYPE 11 7 7 9 6 7 10 9 5
'ATP11B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0547 (Fisher's exact test), Q value = 0.25

Table S1359.  Gene #127: 'ATP11B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATP11B MUTATED 3 0 0 0 0
ATP11B WILD-TYPE 29 18 46 27 23
'ATP11B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S1360.  Gene #127: 'ATP11B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATP11B MUTATED 2 0 1
ATP11B WILD-TYPE 41 67 35
'ATP11B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.095

Table S1361.  Gene #127: 'ATP11B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATP11B MUTATED 0 4 13
ATP11B WILD-TYPE 42 169 134

Figure S508.  Get High-res Image Gene #127: 'ATP11B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP11B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.92

Table S1362.  Gene #127: 'ATP11B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATP11B MUTATED 6 4 4
ATP11B WILD-TYPE 56 69 71
'ATP11B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S1363.  Gene #127: 'ATP11B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATP11B MUTATED 1 3 10
ATP11B WILD-TYPE 69 117 90

Figure S509.  Get High-res Image Gene #127: 'ATP11B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ATP11B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S1364.  Gene #127: 'ATP11B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATP11B MUTATED 1 1 0 2 1 7 2 0 0
ATP11B WILD-TYPE 40 25 30 27 38 62 18 14 22
'ATP11B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.46

Table S1365.  Gene #127: 'ATP11B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATP11B MUTATED 4 7 3 3
ATP11B WILD-TYPE 96 65 69 118
'ATP11B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S1366.  Gene #127: 'ATP11B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATP11B MUTATED 2 4 7 3 1
ATP11B WILD-TYPE 57 71 67 116 37
'ATP11B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S1367.  Gene #127: 'ATP11B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATP11B MUTATED 2 7 2 2 4
ATP11B WILD-TYPE 49 69 59 69 91
'ATP11B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S1368.  Gene #127: 'ATP11B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATP11B MUTATED 2 4 2 1 1 3 1 2 1
ATP11B WILD-TYPE 67 44 37 15 52 17 20 36 49
'ATP11B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S1369.  Gene #127: 'ATP11B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ATP11B MUTATED 2 1 1 0 1 0
ATP11B WILD-TYPE 11 15 13 11 10 9
'ATP11B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.53

Table S1370.  Gene #127: 'ATP11B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ATP11B MUTATED 1 0 0 0 0 0 1 1 2
ATP11B WILD-TYPE 10 7 7 9 8 7 10 8 3
'NCAPD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.076 (Fisher's exact test), Q value = 0.3

Table S1371.  Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NCAPD2 MUTATED 3 0 0 2 0
NCAPD2 WILD-TYPE 29 18 46 25 23
'NCAPD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S1372.  Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NCAPD2 MUTATED 2 2 1
NCAPD2 WILD-TYPE 41 65 35
'NCAPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1373.  Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NCAPD2 MUTATED 0 1 19
NCAPD2 WILD-TYPE 42 172 128

Figure S510.  Get High-res Image Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NCAPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S1374.  Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NCAPD2 MUTATED 9 1 5
NCAPD2 WILD-TYPE 53 72 70

Figure S511.  Get High-res Image Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NCAPD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00684 (Fisher's exact test), Q value = 0.077

Table S1375.  Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NCAPD2 MUTATED 1 4 12
NCAPD2 WILD-TYPE 69 116 88

Figure S512.  Get High-res Image Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NCAPD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.17

Table S1376.  Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NCAPD2 MUTATED 1 1 1 1 0 10 3 0 0
NCAPD2 WILD-TYPE 40 25 29 28 39 59 17 14 22

Figure S513.  Get High-res Image Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'NCAPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S1377.  Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NCAPD2 MUTATED 1 8 5 6
NCAPD2 WILD-TYPE 99 64 67 115

Figure S514.  Get High-res Image Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NCAPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00284 (Fisher's exact test), Q value = 0.046

Table S1378.  Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NCAPD2 MUTATED 0 3 11 4 2
NCAPD2 WILD-TYPE 59 72 63 115 36

Figure S515.  Get High-res Image Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NCAPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.16

Table S1379.  Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NCAPD2 MUTATED 1 10 1 2 4
NCAPD2 WILD-TYPE 50 66 60 69 91

Figure S516.  Get High-res Image Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NCAPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00367 (Fisher's exact test), Q value = 0.054

Table S1380.  Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NCAPD2 MUTATED 3 3 0 4 1 4 0 1 2
NCAPD2 WILD-TYPE 66 45 39 12 52 16 21 37 48

Figure S517.  Get High-res Image Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NCAPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 0.31

Table S1381.  Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NCAPD2 MUTATED 1 0 1 0 3 0
NCAPD2 WILD-TYPE 12 16 13 11 8 9
'NCAPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S1382.  Gene #128: 'NCAPD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NCAPD2 MUTATED 0 0 0 2 0 1 2 0 0
NCAPD2 WILD-TYPE 11 7 7 7 8 6 9 9 5
'FNDC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0869 (Fisher's exact test), Q value = 0.32

Table S1383.  Gene #129: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FNDC7 MUTATED 0 2 7
FNDC7 WILD-TYPE 42 171 140
'FNDC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.77

Table S1384.  Gene #129: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FNDC7 MUTATED 3 1 4
FNDC7 WILD-TYPE 59 72 71
'FNDC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S1385.  Gene #129: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FNDC7 MUTATED 0 2 5
FNDC7 WILD-TYPE 70 118 95
'FNDC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.74

Table S1386.  Gene #129: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FNDC7 MUTATED 0 0 0 1 1 2 2 0 1
FNDC7 WILD-TYPE 41 26 30 28 38 67 18 14 21
'FNDC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.53

Table S1387.  Gene #129: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FNDC7 MUTATED 2 4 2 1
FNDC7 WILD-TYPE 98 68 70 120
'FNDC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0317 (Fisher's exact test), Q value = 0.19

Table S1388.  Gene #129: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FNDC7 MUTATED 1 2 5 0 1
FNDC7 WILD-TYPE 58 73 69 119 37

Figure S518.  Get High-res Image Gene #129: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FNDC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S1389.  Gene #129: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FNDC7 MUTATED 2 4 1 0 2
FNDC7 WILD-TYPE 49 72 60 71 93
'FNDC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S1390.  Gene #129: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FNDC7 MUTATED 1 2 1 1 2 0 0 1 1
FNDC7 WILD-TYPE 68 46 38 15 51 20 21 37 49
'SVIL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S1391.  Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SVIL MUTATED 4 0 0 2 0
SVIL WILD-TYPE 28 18 46 25 23

Figure S519.  Get High-res Image Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SVIL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S1392.  Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SVIL MUTATED 4 1 1
SVIL WILD-TYPE 39 66 35
'SVIL MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1393.  Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SVIL MUTATED 2 2 28
SVIL WILD-TYPE 40 171 119

Figure S520.  Get High-res Image Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SVIL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00578 (Fisher's exact test), Q value = 0.072

Table S1394.  Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SVIL MUTATED 7 3 16
SVIL WILD-TYPE 55 70 59

Figure S521.  Get High-res Image Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SVIL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S1395.  Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SVIL MUTATED 5 9 15
SVIL WILD-TYPE 65 111 85
'SVIL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0446 (Fisher's exact test), Q value = 0.22

Table S1396.  Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SVIL MUTATED 2 1 1 3 5 14 3 0 0
SVIL WILD-TYPE 39 25 29 26 34 55 17 14 22

Figure S522.  Get High-res Image Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'SVIL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00404 (Fisher's exact test), Q value = 0.057

Table S1397.  Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SVIL MUTATED 4 13 9 6
SVIL WILD-TYPE 96 59 63 115

Figure S523.  Get High-res Image Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SVIL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1398.  Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SVIL MUTATED 1 5 19 2 5
SVIL WILD-TYPE 58 70 55 117 33

Figure S524.  Get High-res Image Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SVIL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1399.  Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SVIL MUTATED 0 22 2 1 7
SVIL WILD-TYPE 51 54 59 70 88

Figure S525.  Get High-res Image Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SVIL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S1400.  Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SVIL MUTATED 6 6 0 8 7 1 0 3 1
SVIL WILD-TYPE 63 42 39 8 46 19 21 35 49

Figure S526.  Get High-res Image Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SVIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.012

Table S1401.  Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SVIL MUTATED 0 1 2 1 7 0
SVIL WILD-TYPE 13 15 12 10 4 9

Figure S527.  Get High-res Image Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SVIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.34

Table S1402.  Gene #130: 'SVIL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SVIL MUTATED 0 0 1 3 2 1 4 0 0
SVIL WILD-TYPE 11 7 6 6 6 6 7 9 5
'LARP4B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1403.  Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LARP4B MUTATED 9 0 0 0 0
LARP4B WILD-TYPE 23 18 46 27 23

Figure S528.  Get High-res Image Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LARP4B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0075

Table S1404.  Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LARP4B MUTATED 8 0 1
LARP4B WILD-TYPE 35 67 35

Figure S529.  Get High-res Image Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S1405.  Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LARP4B MUTATED 2 3 23
LARP4B WILD-TYPE 40 170 124

Figure S530.  Get High-res Image Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LARP4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0521 (Fisher's exact test), Q value = 0.24

Table S1406.  Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LARP4B MUTATED 8 2 9
LARP4B WILD-TYPE 54 71 66
'LARP4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00197 (Fisher's exact test), Q value = 0.038

Table S1407.  Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LARP4B MUTATED 1 6 15
LARP4B WILD-TYPE 69 114 85

Figure S531.  Get High-res Image Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LARP4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S1408.  Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LARP4B MUTATED 1 0 2 3 2 11 2 1 0
LARP4B WILD-TYPE 40 26 28 26 37 58 18 13 22
'LARP4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.014

Table S1409.  Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LARP4B MUTATED 1 13 4 11
LARP4B WILD-TYPE 99 59 68 110

Figure S532.  Get High-res Image Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LARP4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1410.  Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LARP4B MUTATED 1 2 15 4 7
LARP4B WILD-TYPE 58 73 59 115 31

Figure S533.  Get High-res Image Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00693 (Fisher's exact test), Q value = 0.078

Table S1411.  Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LARP4B MUTATED 3 14 2 2 7
LARP4B WILD-TYPE 48 62 59 69 88

Figure S534.  Get High-res Image Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.017

Table S1412.  Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LARP4B MUTATED 4 5 0 7 4 1 3 3 1
LARP4B WILD-TYPE 65 43 39 9 49 19 18 35 49

Figure S535.  Get High-res Image Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00656 (Fisher's exact test), Q value = 0.076

Table S1413.  Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LARP4B MUTATED 0 0 0 0 3 0
LARP4B WILD-TYPE 13 16 14 11 8 9

Figure S536.  Get High-res Image Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S1414.  Gene #131: 'LARP4B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LARP4B MUTATED 0 0 0 2 0 0 1 0 0
LARP4B WILD-TYPE 11 7 7 7 8 7 10 9 5
'THOC5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S1415.  Gene #132: 'THOC5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
THOC5 MUTATED 1 0 0 2 0
THOC5 WILD-TYPE 31 18 46 25 23
'THOC5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S1416.  Gene #132: 'THOC5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
THOC5 MUTATED 2 1 0
THOC5 WILD-TYPE 41 66 36
'THOC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00878 (Fisher's exact test), Q value = 0.088

Table S1417.  Gene #132: 'THOC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
THOC5 MUTATED 1 2 11
THOC5 WILD-TYPE 41 171 136

Figure S537.  Get High-res Image Gene #132: 'THOC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'THOC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0933 (Fisher's exact test), Q value = 0.33

Table S1418.  Gene #132: 'THOC5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
THOC5 MUTATED 3 1 7
THOC5 WILD-TYPE 59 72 68
'THOC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.99

Table S1419.  Gene #132: 'THOC5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
THOC5 MUTATED 1 4 4
THOC5 WILD-TYPE 69 116 96
'THOC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S1420.  Gene #132: 'THOC5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
THOC5 MUTATED 1 1 1 0 1 3 1 1 0
THOC5 WILD-TYPE 40 25 29 29 38 66 19 13 22
'THOC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00646 (Fisher's exact test), Q value = 0.075

Table S1421.  Gene #132: 'THOC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
THOC5 MUTATED 1 8 1 4
THOC5 WILD-TYPE 99 64 71 117

Figure S538.  Get High-res Image Gene #132: 'THOC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'THOC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00881 (Fisher's exact test), Q value = 0.088

Table S1422.  Gene #132: 'THOC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
THOC5 MUTATED 0 2 8 2 2
THOC5 WILD-TYPE 59 73 66 117 36

Figure S539.  Get High-res Image Gene #132: 'THOC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'THOC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.21

Table S1423.  Gene #132: 'THOC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
THOC5 MUTATED 1 7 1 0 4
THOC5 WILD-TYPE 50 69 60 71 91

Figure S540.  Get High-res Image Gene #132: 'THOC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'THOC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0949 (Fisher's exact test), Q value = 0.34

Table S1424.  Gene #132: 'THOC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
THOC5 MUTATED 3 1 0 3 2 2 0 1 1
THOC5 WILD-TYPE 66 47 39 13 51 18 21 37 49
'THOC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S1425.  Gene #132: 'THOC5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
THOC5 MUTATED 0 1 0 0 2 1
THOC5 WILD-TYPE 13 15 14 11 9 8
'THOC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S1426.  Gene #132: 'THOC5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
THOC5 MUTATED 1 0 0 1 0 1 1 0 0
THOC5 WILD-TYPE 10 7 7 8 8 6 10 9 5
'GIGYF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00733 (Fisher's exact test), Q value = 0.08

Table S1427.  Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GIGYF2 MUTATED 5 0 0 1 0
GIGYF2 WILD-TYPE 27 18 46 26 23

Figure S541.  Get High-res Image Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GIGYF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S1428.  Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GIGYF2 MUTATED 4 1 1
GIGYF2 WILD-TYPE 39 66 35
'GIGYF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.018

Table S1429.  Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GIGYF2 MUTATED 1 5 20
GIGYF2 WILD-TYPE 41 168 127

Figure S542.  Get High-res Image Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GIGYF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00101 (Fisher's exact test), Q value = 0.025

Table S1430.  Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GIGYF2 MUTATED 12 1 7
GIGYF2 WILD-TYPE 50 72 68

Figure S543.  Get High-res Image Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GIGYF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.84

Table S1431.  Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GIGYF2 MUTATED 4 6 9
GIGYF2 WILD-TYPE 66 114 91
'GIGYF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 0.78

Table S1432.  Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GIGYF2 MUTATED 1 1 1 2 1 8 3 1 1
GIGYF2 WILD-TYPE 40 25 29 27 38 61 17 13 21
'GIGYF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.072 (Fisher's exact test), Q value = 0.29

Table S1433.  Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GIGYF2 MUTATED 4 10 6 6
GIGYF2 WILD-TYPE 96 62 66 115
'GIGYF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00091 (Fisher's exact test), Q value = 0.023

Table S1434.  Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GIGYF2 MUTATED 3 3 14 3 3
GIGYF2 WILD-TYPE 56 72 60 116 35

Figure S544.  Get High-res Image Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00673 (Fisher's exact test), Q value = 0.077

Table S1435.  Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GIGYF2 MUTATED 2 13 4 1 6
GIGYF2 WILD-TYPE 49 63 57 70 89

Figure S545.  Get High-res Image Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0672 (Fisher's exact test), Q value = 0.28

Table S1436.  Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GIGYF2 MUTATED 7 5 1 3 3 2 3 2 0
GIGYF2 WILD-TYPE 62 43 38 13 50 18 18 36 50
'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.94

Table S1437.  Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GIGYF2 MUTATED 0 2 1 1 2 0
GIGYF2 WILD-TYPE 13 14 13 10 9 9
'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S1438.  Gene #133: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GIGYF2 MUTATED 2 0 0 1 0 0 3 0 0
GIGYF2 WILD-TYPE 9 7 7 8 8 7 8 9 5
'DNAH12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00733 (Fisher's exact test), Q value = 0.08

Table S1439.  Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DNAH12 MUTATED 5 0 0 1 0
DNAH12 WILD-TYPE 27 18 46 26 23

Figure S546.  Get High-res Image Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DNAH12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S1440.  Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DNAH12 MUTATED 5 1 0
DNAH12 WILD-TYPE 38 66 36

Figure S547.  Get High-res Image Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DNAH12 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S1441.  Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DNAH12 MUTATED 3 1 18
DNAH12 WILD-TYPE 39 172 129

Figure S548.  Get High-res Image Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNAH12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0731 (Fisher's exact test), Q value = 0.29

Table S1442.  Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DNAH12 MUTATED 7 2 9
DNAH12 WILD-TYPE 55 71 66
'DNAH12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S1443.  Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DNAH12 MUTATED 5 7 9
DNAH12 WILD-TYPE 65 113 91
'DNAH12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 0.99

Table S1444.  Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DNAH12 MUTATED 2 1 1 1 5 6 3 1 1
DNAH12 WILD-TYPE 39 25 29 28 34 63 17 13 21
'DNAH12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00184 (Fisher's exact test), Q value = 0.036

Table S1445.  Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DNAH12 MUTATED 0 8 7 8
DNAH12 WILD-TYPE 100 64 65 113

Figure S549.  Get High-res Image Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DNAH12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00701 (Fisher's exact test), Q value = 0.078

Table S1446.  Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DNAH12 MUTATED 3 2 10 3 5
DNAH12 WILD-TYPE 56 73 64 116 33

Figure S550.  Get High-res Image Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DNAH12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S1447.  Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DNAH12 MUTATED 1 8 4 2 8
DNAH12 WILD-TYPE 50 68 57 69 87
'DNAH12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.94

Table S1448.  Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DNAH12 MUTATED 5 4 0 2 3 2 1 3 3
DNAH12 WILD-TYPE 64 44 39 14 50 18 20 35 47
'DNAH12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S1449.  Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DNAH12 MUTATED 0 1 1 0 2 0
DNAH12 WILD-TYPE 13 15 13 11 9 9
'DNAH12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 0.8

Table S1450.  Gene #134: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DNAH12 MUTATED 1 0 0 0 2 0 1 0 0
DNAH12 WILD-TYPE 10 7 7 9 6 7 10 9 5
'ARFGEF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00343 (Fisher's exact test), Q value = 0.052

Table S1451.  Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ARFGEF1 MUTATED 3 0 0 5 0
ARFGEF1 WILD-TYPE 29 18 46 22 23

Figure S551.  Get High-res Image Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S1452.  Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ARFGEF1 MUTATED 6 1 1
ARFGEF1 WILD-TYPE 37 66 35

Figure S552.  Get High-res Image Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARFGEF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S1453.  Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARFGEF1 MUTATED 4 9 21
ARFGEF1 WILD-TYPE 38 164 126

Figure S553.  Get High-res Image Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.95

Table S1454.  Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARFGEF1 MUTATED 9 7 10
ARFGEF1 WILD-TYPE 53 66 65
'ARFGEF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S1455.  Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARFGEF1 MUTATED 3 13 9
ARFGEF1 WILD-TYPE 67 107 91
'ARFGEF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.89

Table S1456.  Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARFGEF1 MUTATED 3 3 1 4 6 6 0 1 1
ARFGEF1 WILD-TYPE 38 23 29 25 33 63 20 13 21
'ARFGEF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S1457.  Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARFGEF1 MUTATED 12 10 4 8
ARFGEF1 WILD-TYPE 88 62 68 113
'ARFGEF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00843 (Fisher's exact test), Q value = 0.086

Table S1458.  Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARFGEF1 MUTATED 5 10 11 3 5
ARFGEF1 WILD-TYPE 54 65 63 116 33

Figure S554.  Get High-res Image Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S1459.  Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARFGEF1 MUTATED 6 11 5 3 8
ARFGEF1 WILD-TYPE 45 65 56 68 87
'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.13

Table S1460.  Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARFGEF1 MUTATED 6 6 2 3 4 6 0 5 1
ARFGEF1 WILD-TYPE 63 42 37 13 49 14 21 33 49

Figure S555.  Get High-res Image Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.99

Table S1461.  Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ARFGEF1 MUTATED 1 1 0 1 2 1
ARFGEF1 WILD-TYPE 12 15 14 10 9 8
'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S1462.  Gene #135: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ARFGEF1 MUTATED 1 0 0 1 0 1 2 1 0
ARFGEF1 WILD-TYPE 10 7 7 8 8 6 9 8 5
'NOTCH2NL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S1463.  Gene #136: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NOTCH2NL MUTATED 0 2 4
NOTCH2NL WILD-TYPE 42 171 143
'NOTCH2NL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S1464.  Gene #136: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NOTCH2NL MUTATED 2 1 1
NOTCH2NL WILD-TYPE 60 72 74
'NOTCH2NL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.83

Table S1465.  Gene #136: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NOTCH2NL MUTATED 2 1 3
NOTCH2NL WILD-TYPE 68 119 97
'NOTCH2NL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 0.96

Table S1466.  Gene #136: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NOTCH2NL MUTATED 1 0 0 0 0 3 1 0 1
NOTCH2NL WILD-TYPE 40 26 30 29 39 66 19 14 21
'NOTCH2NL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S1467.  Gene #136: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NOTCH2NL MUTATED 0 3 1 2
NOTCH2NL WILD-TYPE 100 69 71 119
'NOTCH2NL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1468.  Gene #136: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NOTCH2NL MUTATED 1 1 2 1 1
NOTCH2NL WILD-TYPE 58 74 72 118 37
'NOTCH2NL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S1469.  Gene #136: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NOTCH2NL MUTATED 1 1 1 0 2
NOTCH2NL WILD-TYPE 50 75 60 71 93
'NOTCH2NL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 0.98

Table S1470.  Gene #136: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NOTCH2NL MUTATED 1 1 1 1 0 0 0 0 1
NOTCH2NL WILD-TYPE 68 47 38 15 53 20 21 38 49
'SENP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 0.27

Table S1471.  Gene #137: 'SENP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SENP6 MUTATED 2 3 10
SENP6 WILD-TYPE 40 170 137
'SENP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S1472.  Gene #137: 'SENP6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SENP6 MUTATED 4 2 8
SENP6 WILD-TYPE 58 71 67
'SENP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S1473.  Gene #137: 'SENP6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SENP6 MUTATED 1 5 7
SENP6 WILD-TYPE 69 115 93
'SENP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S1474.  Gene #137: 'SENP6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SENP6 MUTATED 1 0 0 3 1 6 1 0 1
SENP6 WILD-TYPE 40 26 30 26 38 63 19 14 21
'SENP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00336 (Fisher's exact test), Q value = 0.051

Table S1475.  Gene #137: 'SENP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SENP6 MUTATED 2 8 4 1
SENP6 WILD-TYPE 98 64 68 120

Figure S556.  Get High-res Image Gene #137: 'SENP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SENP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S1476.  Gene #137: 'SENP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SENP6 MUTATED 3 1 10 0 1
SENP6 WILD-TYPE 56 74 64 119 37

Figure S557.  Get High-res Image Gene #137: 'SENP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SENP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.01

Table S1477.  Gene #137: 'SENP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SENP6 MUTATED 2 9 3 0 0
SENP6 WILD-TYPE 49 67 58 71 95

Figure S558.  Get High-res Image Gene #137: 'SENP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SENP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00129 (Fisher's exact test), Q value = 0.029

Table S1478.  Gene #137: 'SENP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SENP6 MUTATED 2 3 1 5 2 1 0 0 0
SENP6 WILD-TYPE 67 45 38 11 51 19 21 38 50

Figure S559.  Get High-res Image Gene #137: 'SENP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'WDR78 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S1479.  Gene #138: 'WDR78 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
WDR78 MUTATED 2 0 0 1 0
WDR78 WILD-TYPE 30 18 46 26 23
'WDR78 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S1480.  Gene #138: 'WDR78 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
WDR78 MUTATED 2 1 0
WDR78 WILD-TYPE 41 66 36
'WDR78 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 0.29

Table S1481.  Gene #138: 'WDR78 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WDR78 MUTATED 0 3 9
WDR78 WILD-TYPE 42 170 138
'WDR78 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S1482.  Gene #138: 'WDR78 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WDR78 MUTATED 5 3 1
WDR78 WILD-TYPE 57 70 74
'WDR78 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0756 (Fisher's exact test), Q value = 0.3

Table S1483.  Gene #138: 'WDR78 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WDR78 MUTATED 1 2 7
WDR78 WILD-TYPE 69 118 93
'WDR78 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S1484.  Gene #138: 'WDR78 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WDR78 MUTATED 1 0 0 0 1 5 1 0 2
WDR78 WILD-TYPE 40 26 30 29 38 64 19 14 20
'WDR78 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.57

Table S1485.  Gene #138: 'WDR78 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WDR78 MUTATED 2 4 4 2
WDR78 WILD-TYPE 98 68 68 119
'WDR78 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S1486.  Gene #138: 'WDR78 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WDR78 MUTATED 3 3 3 2 1
WDR78 WILD-TYPE 56 72 71 117 37
'WDR78 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S1487.  Gene #138: 'WDR78 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WDR78 MUTATED 2 5 1 0 4
WDR78 WILD-TYPE 49 71 60 71 91
'WDR78 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.997 (Fisher's exact test), Q value = 1

Table S1488.  Gene #138: 'WDR78 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WDR78 MUTATED 3 2 1 0 2 1 1 1 1
WDR78 WILD-TYPE 66 46 38 16 51 19 20 37 49
'CAB39L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00073 (Fisher's exact test), Q value = 0.02

Table S1489.  Gene #139: 'CAB39L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CAB39L MUTATED 0 0 9
CAB39L WILD-TYPE 42 173 138

Figure S560.  Get High-res Image Gene #139: 'CAB39L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CAB39L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00533 (Fisher's exact test), Q value = 0.069

Table S1490.  Gene #139: 'CAB39L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CAB39L MUTATED 1 0 7
CAB39L WILD-TYPE 61 73 68

Figure S561.  Get High-res Image Gene #139: 'CAB39L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CAB39L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S1491.  Gene #139: 'CAB39L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CAB39L MUTATED 1 2 6
CAB39L WILD-TYPE 69 118 94
'CAB39L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S1492.  Gene #139: 'CAB39L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CAB39L MUTATED 1 0 1 0 0 5 2 0 0
CAB39L WILD-TYPE 40 26 29 29 39 64 18 14 22
'CAB39L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00223 (Fisher's exact test), Q value = 0.04

Table S1493.  Gene #139: 'CAB39L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CAB39L MUTATED 0 6 2 1
CAB39L WILD-TYPE 100 66 70 120

Figure S562.  Get High-res Image Gene #139: 'CAB39L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CAB39L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00304 (Fisher's exact test), Q value = 0.048

Table S1494.  Gene #139: 'CAB39L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CAB39L MUTATED 0 1 7 1 0
CAB39L WILD-TYPE 59 74 67 118 38

Figure S563.  Get High-res Image Gene #139: 'CAB39L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CAB39L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0069

Table S1495.  Gene #139: 'CAB39L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CAB39L MUTATED 0 8 0 0 1
CAB39L WILD-TYPE 51 68 61 71 94

Figure S564.  Get High-res Image Gene #139: 'CAB39L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CAB39L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S1496.  Gene #139: 'CAB39L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CAB39L MUTATED 1 2 0 3 2 1 0 0 0
CAB39L WILD-TYPE 68 46 39 13 51 19 21 38 50

Figure S565.  Get High-res Image Gene #139: 'CAB39L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CAB39L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S1497.  Gene #139: 'CAB39L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CAB39L MUTATED 0 1 0 0 2 0
CAB39L WILD-TYPE 13 15 14 11 9 9
'CAB39L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S1498.  Gene #139: 'CAB39L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CAB39L MUTATED 0 0 0 1 0 0 2 0 0
CAB39L WILD-TYPE 11 7 7 8 8 7 9 9 5
'WEE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00045 (Fisher's exact test), Q value = 0.015

Table S1499.  Gene #140: 'WEE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WEE1 MUTATED 3 0 9
WEE1 WILD-TYPE 39 173 138

Figure S566.  Get High-res Image Gene #140: 'WEE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WEE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S1500.  Gene #140: 'WEE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WEE1 MUTATED 4 1 5
WEE1 WILD-TYPE 58 72 70
'WEE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S1501.  Gene #140: 'WEE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WEE1 MUTATED 2 7 2
WEE1 WILD-TYPE 68 113 98
'WEE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S1502.  Gene #140: 'WEE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WEE1 MUTATED 0 1 1 4 1 2 2 0 0
WEE1 WILD-TYPE 41 25 29 25 38 67 18 14 22
'WEE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0765 (Fisher's exact test), Q value = 0.3

Table S1503.  Gene #140: 'WEE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WEE1 MUTATED 1 6 2 3
WEE1 WILD-TYPE 99 66 70 118
'WEE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S1504.  Gene #140: 'WEE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WEE1 MUTATED 1 3 5 1 2
WEE1 WILD-TYPE 58 72 69 118 36
'WEE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S1505.  Gene #140: 'WEE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WEE1 MUTATED 2 4 1 2 3
WEE1 WILD-TYPE 49 72 60 69 92
'WEE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1506.  Gene #140: 'WEE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WEE1 MUTATED 2 2 0 1 2 1 0 2 2
WEE1 WILD-TYPE 67 46 39 15 51 19 21 36 48
'ZFX MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.18

Table S1507.  Gene #141: 'ZFX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZFX MUTATED 4 0 0 1 0
ZFX WILD-TYPE 28 18 46 26 23

Figure S567.  Get High-res Image Gene #141: 'ZFX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZFX MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0675 (Fisher's exact test), Q value = 0.28

Table S1508.  Gene #141: 'ZFX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZFX MUTATED 4 1 0
ZFX WILD-TYPE 39 66 36
'ZFX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 0.19

Table S1509.  Gene #141: 'ZFX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZFX MUTATED 0 3 10
ZFX WILD-TYPE 42 170 137

Figure S568.  Get High-res Image Gene #141: 'ZFX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZFX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S1510.  Gene #141: 'ZFX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZFX MUTATED 1 2 5
ZFX WILD-TYPE 61 71 70
'ZFX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.96

Table S1511.  Gene #141: 'ZFX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZFX MUTATED 3 5 2
ZFX WILD-TYPE 67 115 98
'ZFX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S1512.  Gene #141: 'ZFX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZFX MUTATED 2 1 1 1 1 2 1 1 0
ZFX WILD-TYPE 39 25 29 28 38 67 19 13 22
'ZFX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S1513.  Gene #141: 'ZFX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZFX MUTATED 2 4 2 5
ZFX WILD-TYPE 98 68 70 116
'ZFX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S1514.  Gene #141: 'ZFX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZFX MUTATED 2 1 5 1 4
ZFX WILD-TYPE 57 74 69 118 34

Figure S569.  Get High-res Image Gene #141: 'ZFX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZFX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.42

Table S1515.  Gene #141: 'ZFX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZFX MUTATED 3 3 1 0 6
ZFX WILD-TYPE 48 73 60 71 89
'ZFX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0672 (Fisher's exact test), Q value = 0.28

Table S1516.  Gene #141: 'ZFX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZFX MUTATED 3 1 0 2 1 1 1 4 0
ZFX WILD-TYPE 66 47 39 14 52 19 20 34 50
'ZFX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.89

Table S1517.  Gene #141: 'ZFX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZFX MUTATED 0 1 0 0 1 1
ZFX WILD-TYPE 13 15 14 11 10 8
'ZFX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S1518.  Gene #141: 'ZFX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZFX MUTATED 2 0 0 1 0 0 0 0 0
ZFX WILD-TYPE 9 7 7 8 8 7 11 9 5
'ASNSD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0976 (Fisher's exact test), Q value = 0.34

Table S1519.  Gene #142: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ASNSD1 MUTATED 3 0 0 1 0
ASNSD1 WILD-TYPE 29 18 46 26 23
'ASNSD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0522 (Fisher's exact test), Q value = 0.24

Table S1520.  Gene #142: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ASNSD1 MUTATED 3 0 1
ASNSD1 WILD-TYPE 40 67 35
'ASNSD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00061 (Fisher's exact test), Q value = 0.018

Table S1521.  Gene #142: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ASNSD1 MUTATED 0 0 9
ASNSD1 WILD-TYPE 42 173 138

Figure S570.  Get High-res Image Gene #142: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ASNSD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 0.21

Table S1522.  Gene #142: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ASNSD1 MUTATED 4 0 1
ASNSD1 WILD-TYPE 58 73 74

Figure S571.  Get High-res Image Gene #142: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ASNSD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S1523.  Gene #142: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ASNSD1 MUTATED 1 3 3
ASNSD1 WILD-TYPE 69 117 97
'ASNSD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 0.98

Table S1524.  Gene #142: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ASNSD1 MUTATED 1 1 0 0 3 2 0 0 0
ASNSD1 WILD-TYPE 40 25 30 29 36 67 20 14 22
'ASNSD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S1525.  Gene #142: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ASNSD1 MUTATED 0 1 3 5
ASNSD1 WILD-TYPE 100 71 69 116
'ASNSD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S1526.  Gene #142: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ASNSD1 MUTATED 1 1 2 2 3
ASNSD1 WILD-TYPE 58 74 72 117 35
'ASNSD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.96

Table S1527.  Gene #142: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ASNSD1 MUTATED 0 2 2 1 4
ASNSD1 WILD-TYPE 51 74 59 70 91
'ASNSD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S1528.  Gene #142: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ASNSD1 MUTATED 1 1 0 0 3 0 0 3 1
ASNSD1 WILD-TYPE 68 47 39 16 50 20 21 35 49
'KLC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.74

Table S1529.  Gene #143: 'KLC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KLC4 MUTATED 3 0 1 1 0
KLC4 WILD-TYPE 29 18 45 26 23
'KLC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0233 (Fisher's exact test), Q value = 0.16

Table S1530.  Gene #143: 'KLC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KLC4 MUTATED 4 0 1
KLC4 WILD-TYPE 39 67 35

Figure S572.  Get High-res Image Gene #143: 'KLC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KLC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S1531.  Gene #143: 'KLC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KLC4 MUTATED 3 4 9
KLC4 WILD-TYPE 39 169 138
'KLC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.88

Table S1532.  Gene #143: 'KLC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KLC4 MUTATED 3 2 5
KLC4 WILD-TYPE 59 71 70
'KLC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S1533.  Gene #143: 'KLC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KLC4 MUTATED 2 5 5
KLC4 WILD-TYPE 68 115 95
'KLC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S1534.  Gene #143: 'KLC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KLC4 MUTATED 2 1 0 1 4 3 0 1 0
KLC4 WILD-TYPE 39 25 30 28 35 66 20 13 22
'KLC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.92

Table S1535.  Gene #143: 'KLC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KLC4 MUTATED 3 5 2 5
KLC4 WILD-TYPE 97 67 70 116
'KLC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0857 (Fisher's exact test), Q value = 0.32

Table S1536.  Gene #143: 'KLC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KLC4 MUTATED 1 3 5 2 4
KLC4 WILD-TYPE 58 72 69 117 34
'KLC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S1537.  Gene #143: 'KLC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KLC4 MUTATED 2 4 2 3 5
KLC4 WILD-TYPE 49 72 59 68 90
'KLC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S1538.  Gene #143: 'KLC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KLC4 MUTATED 2 2 4 2 1 1 0 3 1
KLC4 WILD-TYPE 67 46 35 14 52 19 21 35 49
'KLC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.96

Table S1539.  Gene #143: 'KLC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KLC4 MUTATED 0 0 1 1 1 0
KLC4 WILD-TYPE 13 16 13 10 10 9
'KLC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.94

Table S1540.  Gene #143: 'KLC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KLC4 MUTATED 1 0 0 0 0 0 2 0 0
KLC4 WILD-TYPE 10 7 7 9 8 7 9 9 5
'GLI1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S1541.  Gene #144: 'GLI1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GLI1 MUTATED 1 0 0 2 0
GLI1 WILD-TYPE 31 18 46 25 23
'GLI1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S1542.  Gene #144: 'GLI1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GLI1 MUTATED 2 1 0
GLI1 WILD-TYPE 41 66 36
'GLI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00262 (Fisher's exact test), Q value = 0.044

Table S1543.  Gene #144: 'GLI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GLI1 MUTATED 3 2 13
GLI1 WILD-TYPE 39 171 134

Figure S573.  Get High-res Image Gene #144: 'GLI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GLI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S1544.  Gene #144: 'GLI1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GLI1 MUTATED 6 2 7
GLI1 WILD-TYPE 56 71 68
'GLI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.17

Table S1545.  Gene #144: 'GLI1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GLI1 MUTATED 1 4 10
GLI1 WILD-TYPE 69 116 90

Figure S574.  Get High-res Image Gene #144: 'GLI1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GLI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S1546.  Gene #144: 'GLI1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GLI1 MUTATED 2 0 1 0 1 8 1 1 1
GLI1 WILD-TYPE 39 26 29 29 38 61 19 13 21
'GLI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.089 (Fisher's exact test), Q value = 0.32

Table S1547.  Gene #144: 'GLI1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GLI1 MUTATED 2 7 5 4
GLI1 WILD-TYPE 98 65 67 117
'GLI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S1548.  Gene #144: 'GLI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GLI1 MUTATED 1 4 9 2 2
GLI1 WILD-TYPE 58 71 65 117 36

Figure S575.  Get High-res Image Gene #144: 'GLI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GLI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00257 (Fisher's exact test), Q value = 0.043

Table S1549.  Gene #144: 'GLI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GLI1 MUTATED 3 10 0 1 3
GLI1 WILD-TYPE 48 66 61 70 92

Figure S576.  Get High-res Image Gene #144: 'GLI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GLI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0841 (Fisher's exact test), Q value = 0.31

Table S1550.  Gene #144: 'GLI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GLI1 MUTATED 5 3 1 3 0 2 0 1 2
GLI1 WILD-TYPE 64 45 38 13 53 18 21 37 48
'GLI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S1551.  Gene #144: 'GLI1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GLI1 MUTATED 0 1 1 0 2 1
GLI1 WILD-TYPE 13 15 13 11 9 8
'GLI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S1552.  Gene #144: 'GLI1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GLI1 MUTATED 2 0 0 0 0 0 3 0 0
GLI1 WILD-TYPE 9 7 7 9 8 7 8 9 5
'CRY1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0958 (Fisher's exact test), Q value = 0.34

Table S1553.  Gene #145: 'CRY1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CRY1 MUTATED 1 3 9
CRY1 WILD-TYPE 41 170 138
'CRY1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.89

Table S1554.  Gene #145: 'CRY1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CRY1 MUTATED 3 3 6
CRY1 WILD-TYPE 59 70 69
'CRY1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 0.2

Table S1555.  Gene #145: 'CRY1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CRY1 MUTATED 3 1 7
CRY1 WILD-TYPE 67 119 93

Figure S577.  Get High-res Image Gene #145: 'CRY1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CRY1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.78

Table S1556.  Gene #145: 'CRY1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CRY1 MUTATED 2 0 0 0 2 6 1 0 0
CRY1 WILD-TYPE 39 26 30 29 37 63 19 14 22
'CRY1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S1557.  Gene #145: 'CRY1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CRY1 MUTATED 4 3 5 1
CRY1 WILD-TYPE 96 69 67 120
'CRY1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0575 (Fisher's exact test), Q value = 0.26

Table S1558.  Gene #145: 'CRY1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CRY1 MUTATED 4 3 5 1 0
CRY1 WILD-TYPE 55 72 69 118 38
'CRY1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S1559.  Gene #145: 'CRY1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CRY1 MUTATED 2 3 4 2 2
CRY1 WILD-TYPE 49 73 57 69 93
'CRY1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0985 (Fisher's exact test), Q value = 0.34

Table S1560.  Gene #145: 'CRY1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CRY1 MUTATED 5 3 1 2 0 0 1 1 0
CRY1 WILD-TYPE 64 45 38 14 53 20 20 37 50
'CRY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S1561.  Gene #145: 'CRY1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CRY1 MUTATED 1 1 0 0 1 1
CRY1 WILD-TYPE 12 15 14 11 10 8
'CRY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S1562.  Gene #145: 'CRY1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CRY1 MUTATED 0 1 0 0 1 0 0 1 1
CRY1 WILD-TYPE 11 6 7 9 7 7 11 8 4
'FGFR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.16

Table S1563.  Gene #146: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FGFR3 MUTATED 2 5 15
FGFR3 WILD-TYPE 40 168 132

Figure S578.  Get High-res Image Gene #146: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FGFR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.19

Table S1564.  Gene #146: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FGFR3 MUTATED 9 2 9
FGFR3 WILD-TYPE 53 71 66

Figure S579.  Get High-res Image Gene #146: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FGFR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S1565.  Gene #146: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FGFR3 MUTATED 2 8 8
FGFR3 WILD-TYPE 68 112 92
'FGFR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S1566.  Gene #146: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FGFR3 MUTATED 5 1 1 3 0 5 3 0 0
FGFR3 WILD-TYPE 36 25 29 26 39 64 17 14 22
'FGFR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00178 (Fisher's exact test), Q value = 0.035

Table S1567.  Gene #146: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FGFR3 MUTATED 3 8 9 2
FGFR3 WILD-TYPE 97 64 63 119

Figure S580.  Get High-res Image Gene #146: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FGFR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00256 (Fisher's exact test), Q value = 0.043

Table S1568.  Gene #146: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FGFR3 MUTATED 5 5 10 1 1
FGFR3 WILD-TYPE 54 70 64 118 37

Figure S581.  Get High-res Image Gene #146: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FGFR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 0.28

Table S1569.  Gene #146: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FGFR3 MUTATED 4 8 6 2 2
FGFR3 WILD-TYPE 47 68 55 69 93
'FGFR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 0.22

Table S1570.  Gene #146: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FGFR3 MUTATED 6 7 0 3 2 1 0 1 2
FGFR3 WILD-TYPE 63 41 39 13 51 19 21 37 48

Figure S582.  Get High-res Image Gene #146: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FGFR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.65

Table S1571.  Gene #146: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FGFR3 MUTATED 0 3 2 0 2 2
FGFR3 WILD-TYPE 13 13 12 11 9 7
'FGFR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1572.  Gene #146: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FGFR3 MUTATED 1 1 1 2 2 1 0 1 0
FGFR3 WILD-TYPE 10 6 6 7 6 6 11 8 5
'PDGFRA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.57

Table S1573.  Gene #147: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PDGFRA MUTATED 3 1 1 3 0
PDGFRA WILD-TYPE 29 17 45 24 23
'PDGFRA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S1574.  Gene #147: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PDGFRA MUTATED 4 3 1
PDGFRA WILD-TYPE 39 64 35
'PDGFRA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S1575.  Gene #147: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PDGFRA MUTATED 3 20 26
PDGFRA WILD-TYPE 39 153 121
'PDGFRA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.93

Table S1576.  Gene #147: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PDGFRA MUTATED 11 12 17
PDGFRA WILD-TYPE 51 61 58
'PDGFRA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.62

Table S1577.  Gene #147: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PDGFRA MUTATED 6 20 15
PDGFRA WILD-TYPE 64 100 85
'PDGFRA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S1578.  Gene #147: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PDGFRA MUTATED 6 2 3 7 3 10 3 5 2
PDGFRA WILD-TYPE 35 24 27 22 36 59 17 9 20
'PDGFRA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.47

Table S1579.  Gene #147: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PDGFRA MUTATED 17 12 10 10
PDGFRA WILD-TYPE 83 60 62 111
'PDGFRA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00669 (Fisher's exact test), Q value = 0.077

Table S1580.  Gene #147: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PDGFRA MUTATED 11 14 14 6 4
PDGFRA WILD-TYPE 48 61 60 113 34

Figure S583.  Get High-res Image Gene #147: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PDGFRA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S1581.  Gene #147: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PDGFRA MUTATED 8 15 10 7 8
PDGFRA WILD-TYPE 43 61 51 64 87
'PDGFRA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S1582.  Gene #147: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PDGFRA MUTATED 11 11 6 3 5 4 1 4 3
PDGFRA WILD-TYPE 58 37 33 13 48 16 20 34 47
'PDGFRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S1583.  Gene #147: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PDGFRA MUTATED 3 1 1 3 1 2
PDGFRA WILD-TYPE 10 15 13 8 10 7
'PDGFRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S1584.  Gene #147: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PDGFRA MUTATED 1 0 2 1 1 0 2 4 0
PDGFRA WILD-TYPE 10 7 5 8 7 7 9 5 5
'HLA-A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S1585.  Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HLA-A MUTATED 2 0 0 1 0
HLA-A WILD-TYPE 30 18 46 26 23
'HLA-A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S1586.  Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HLA-A MUTATED 2 1 0
HLA-A WILD-TYPE 41 66 36
'HLA-A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0081

Table S1587.  Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HLA-A MUTATED 0 1 14
HLA-A WILD-TYPE 42 172 133

Figure S584.  Get High-res Image Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HLA-A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00687 (Fisher's exact test), Q value = 0.077

Table S1588.  Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HLA-A MUTATED 6 0 8
HLA-A WILD-TYPE 56 73 67

Figure S585.  Get High-res Image Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HLA-A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.5

Table S1589.  Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HLA-A MUTATED 2 4 8
HLA-A WILD-TYPE 68 116 92
'HLA-A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S1590.  Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HLA-A MUTATED 0 1 0 2 2 6 3 0 0
HLA-A WILD-TYPE 41 25 30 27 37 63 17 14 22
'HLA-A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0075

Table S1591.  Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HLA-A MUTATED 1 11 3 2
HLA-A WILD-TYPE 99 61 69 119

Figure S586.  Get High-res Image Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HLA-A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S1592.  Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HLA-A MUTATED 0 3 11 1 2
HLA-A WILD-TYPE 59 72 63 118 36

Figure S587.  Get High-res Image Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.0087

Table S1593.  Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HLA-A MUTATED 1 11 0 0 5
HLA-A WILD-TYPE 50 65 61 71 90

Figure S588.  Get High-res Image Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0764 (Fisher's exact test), Q value = 0.3

Table S1594.  Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HLA-A MUTATED 5 1 0 3 2 2 0 3 1
HLA-A WILD-TYPE 64 47 39 13 51 18 21 35 49
'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0066 (Fisher's exact test), Q value = 0.076

Table S1595.  Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HLA-A MUTATED 0 0 0 0 3 0
HLA-A WILD-TYPE 13 16 14 11 8 9

Figure S589.  Get High-res Image Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S1596.  Gene #148: 'HLA-A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HLA-A MUTATED 0 0 0 1 0 1 1 0 0
HLA-A WILD-TYPE 11 7 7 8 8 6 10 9 5
'SCAI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.14

Table S1597.  Gene #149: 'SCAI MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SCAI MUTATED 0 3 11
SCAI WILD-TYPE 42 170 136

Figure S590.  Get High-res Image Gene #149: 'SCAI MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SCAI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S1598.  Gene #149: 'SCAI MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SCAI MUTATED 4 1 6
SCAI WILD-TYPE 58 72 69
'SCAI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0541 (Fisher's exact test), Q value = 0.25

Table S1599.  Gene #149: 'SCAI MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SCAI MUTATED 0 1 5
SCAI WILD-TYPE 70 119 95
'SCAI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S1600.  Gene #149: 'SCAI MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SCAI MUTATED 1 0 1 0 0 4 0 0 0
SCAI WILD-TYPE 40 26 29 29 39 65 20 14 22
'SCAI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S1601.  Gene #149: 'SCAI MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SCAI MUTATED 4 3 4 3
SCAI WILD-TYPE 96 69 68 118
'SCAI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S1602.  Gene #149: 'SCAI MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SCAI MUTATED 2 4 5 1 2
SCAI WILD-TYPE 57 71 69 118 36
'SCAI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S1603.  Gene #149: 'SCAI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SCAI MUTATED 0 6 4 2 2
SCAI WILD-TYPE 51 70 57 69 93
'SCAI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S1604.  Gene #149: 'SCAI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SCAI MUTATED 2 4 0 2 3 1 0 2 0
SCAI WILD-TYPE 67 44 39 14 50 19 21 36 50
'MEN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S1605.  Gene #150: 'MEN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MEN1 MUTATED 1 11 12
MEN1 WILD-TYPE 41 162 135
'MEN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S1606.  Gene #150: 'MEN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MEN1 MUTATED 5 6 12
MEN1 WILD-TYPE 57 67 63
'MEN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S1607.  Gene #150: 'MEN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MEN1 MUTATED 1 8 9
MEN1 WILD-TYPE 69 112 91
'MEN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S1608.  Gene #150: 'MEN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MEN1 MUTATED 2 1 1 2 1 8 1 2 0
MEN1 WILD-TYPE 39 25 29 27 38 61 19 12 22
'MEN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.009

Table S1609.  Gene #150: 'MEN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MEN1 MUTATED 8 12 3 1
MEN1 WILD-TYPE 92 60 69 120

Figure S591.  Get High-res Image Gene #150: 'MEN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MEN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S1610.  Gene #150: 'MEN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MEN1 MUTATED 3 9 11 0 1
MEN1 WILD-TYPE 56 66 63 119 37

Figure S592.  Get High-res Image Gene #150: 'MEN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MEN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00049 (Fisher's exact test), Q value = 0.016

Table S1611.  Gene #150: 'MEN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MEN1 MUTATED 5 13 3 1 2
MEN1 WILD-TYPE 46 63 58 70 93

Figure S593.  Get High-res Image Gene #150: 'MEN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MEN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00752 (Fisher's exact test), Q value = 0.081

Table S1612.  Gene #150: 'MEN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MEN1 MUTATED 7 3 2 4 2 4 0 2 0
MEN1 WILD-TYPE 62 45 37 12 51 16 21 36 50

Figure S594.  Get High-res Image Gene #150: 'MEN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 0.26

Table S1613.  Gene #150: 'MEN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MEN1 MUTATED 3 0 0 2 2 0
MEN1 WILD-TYPE 10 16 14 9 9 9
'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S1614.  Gene #150: 'MEN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MEN1 MUTATED 0 0 1 2 0 0 2 1 1
MEN1 WILD-TYPE 11 7 6 7 8 7 9 8 4
'FAM179A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00898 (Fisher's exact test), Q value = 0.089

Table S1615.  Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FAM179A MUTATED 4 0 0 0 0
FAM179A WILD-TYPE 28 18 46 27 23

Figure S595.  Get High-res Image Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FAM179A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.095

Table S1616.  Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FAM179A MUTATED 4 0 0
FAM179A WILD-TYPE 39 67 36

Figure S596.  Get High-res Image Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FAM179A MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0053

Table S1617.  Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM179A MUTATED 4 3 20
FAM179A WILD-TYPE 38 170 127

Figure S597.  Get High-res Image Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM179A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S1618.  Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM179A MUTATED 9 2 12
FAM179A WILD-TYPE 53 71 63

Figure S598.  Get High-res Image Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FAM179A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S1619.  Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM179A MUTATED 2 11 11
FAM179A WILD-TYPE 68 109 89
'FAM179A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.95

Table S1620.  Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM179A MUTATED 3 3 1 3 1 8 3 1 1
FAM179A WILD-TYPE 38 23 29 26 38 61 17 13 21
'FAM179A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.15

Table S1621.  Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM179A MUTATED 3 10 8 6
FAM179A WILD-TYPE 97 62 64 115

Figure S599.  Get High-res Image Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FAM179A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1622.  Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM179A MUTATED 2 5 14 1 5
FAM179A WILD-TYPE 57 70 60 118 33

Figure S600.  Get High-res Image Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM179A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00047 (Fisher's exact test), Q value = 0.015

Table S1623.  Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM179A MUTATED 3 14 3 0 7
FAM179A WILD-TYPE 48 62 58 71 88

Figure S601.  Get High-res Image Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FAM179A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00261 (Fisher's exact test), Q value = 0.044

Table S1624.  Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM179A MUTATED 3 4 1 7 3 2 1 4 2
FAM179A WILD-TYPE 66 44 38 9 50 18 20 34 48

Figure S602.  Get High-res Image Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM179A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00763 (Fisher's exact test), Q value = 0.082

Table S1625.  Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FAM179A MUTATED 3 3 0 0 5 0
FAM179A WILD-TYPE 10 13 14 11 6 9

Figure S603.  Get High-res Image Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FAM179A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S1626.  Gene #151: 'FAM179A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FAM179A MUTATED 0 1 0 4 1 2 2 0 1
FAM179A WILD-TYPE 11 6 7 5 7 5 9 9 4
'MLL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S1627.  Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MLL2 MUTATED 5 1 0 3 0
MLL2 WILD-TYPE 27 17 46 24 23

Figure S604.  Get High-res Image Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MLL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00525 (Fisher's exact test), Q value = 0.068

Table S1628.  Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MLL2 MUTATED 7 2 0
MLL2 WILD-TYPE 36 65 36

Figure S605.  Get High-res Image Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.011

Table S1629.  Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MLL2 MUTATED 4 13 34
MLL2 WILD-TYPE 38 160 113

Figure S606.  Get High-res Image Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 0.24

Table S1630.  Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MLL2 MUTATED 15 8 19
MLL2 WILD-TYPE 47 65 56
'MLL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00801 (Fisher's exact test), Q value = 0.084

Table S1631.  Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MLL2 MUTATED 6 17 26
MLL2 WILD-TYPE 64 103 74

Figure S607.  Get High-res Image Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MLL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00897 (Fisher's exact test), Q value = 0.089

Table S1632.  Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MLL2 MUTATED 7 1 3 7 4 22 3 0 2
MLL2 WILD-TYPE 34 25 27 22 35 47 17 14 20

Figure S608.  Get High-res Image Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00997 (Fisher's exact test), Q value = 0.094

Table S1633.  Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MLL2 MUTATED 10 18 13 11
MLL2 WILD-TYPE 90 54 59 110

Figure S609.  Get High-res Image Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MLL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1634.  Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MLL2 MUTATED 4 12 24 4 8
MLL2 WILD-TYPE 55 63 50 115 30

Figure S610.  Get High-res Image Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1635.  Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MLL2 MUTATED 3 27 11 2 8
MLL2 WILD-TYPE 48 49 50 69 87

Figure S611.  Get High-res Image Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00266 (Fisher's exact test), Q value = 0.044

Table S1636.  Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MLL2 MUTATED 12 9 4 9 6 1 3 4 3
MLL2 WILD-TYPE 57 39 35 7 47 19 18 34 47

Figure S612.  Get High-res Image Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.14

Table S1637.  Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MLL2 MUTATED 1 3 2 1 7 1
MLL2 WILD-TYPE 12 13 12 10 4 8

Figure S613.  Get High-res Image Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S1638.  Gene #152: 'MLL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MLL2 MUTATED 1 1 0 2 2 2 6 1 0
MLL2 WILD-TYPE 10 6 7 7 6 5 5 8 5
'FGFR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S1639.  Gene #153: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FGFR2 MUTATED 5 17 23
FGFR2 WILD-TYPE 37 156 124
'FGFR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S1640.  Gene #153: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FGFR2 MUTATED 17 12 15
FGFR2 WILD-TYPE 45 61 60
'FGFR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0988 (Fisher's exact test), Q value = 0.34

Table S1641.  Gene #153: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FGFR2 MUTATED 7 13 20
FGFR2 WILD-TYPE 63 107 80
'FGFR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S1642.  Gene #153: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FGFR2 MUTATED 5 3 1 2 4 16 3 3 3
FGFR2 WILD-TYPE 36 23 29 27 35 53 17 11 19
'FGFR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1643.  Gene #153: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FGFR2 MUTATED 11 17 14 3
FGFR2 WILD-TYPE 89 55 58 118

Figure S614.  Get High-res Image Gene #153: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FGFR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1644.  Gene #153: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FGFR2 MUTATED 11 12 19 2 1
FGFR2 WILD-TYPE 48 63 55 117 37

Figure S615.  Get High-res Image Gene #153: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FGFR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1645.  Gene #153: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FGFR2 MUTATED 9 21 9 4 2
FGFR2 WILD-TYPE 42 55 52 67 93

Figure S616.  Get High-res Image Gene #153: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FGFR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S1646.  Gene #153: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FGFR2 MUTATED 16 5 3 8 8 3 0 1 1
FGFR2 WILD-TYPE 53 43 36 8 45 17 21 37 49

Figure S617.  Get High-res Image Gene #153: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FGFR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.9

Table S1647.  Gene #153: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FGFR2 MUTATED 1 3 3 1 4 2
FGFR2 WILD-TYPE 12 13 11 10 7 7
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S1648.  Gene #153: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FGFR2 MUTATED 4 0 0 3 3 1 2 1 0
FGFR2 WILD-TYPE 7 7 7 6 5 6 9 8 5
'SLC4A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S1649.  Gene #154: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC4A10 MUTATED 2 11 14
SLC4A10 WILD-TYPE 40 162 133
'SLC4A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S1650.  Gene #154: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC4A10 MUTATED 6 7 11
SLC4A10 WILD-TYPE 56 66 64
'SLC4A10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1651.  Gene #154: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC4A10 MUTATED 5 10 8
SLC4A10 WILD-TYPE 65 110 92
'SLC4A10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.85

Table S1652.  Gene #154: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC4A10 MUTATED 4 2 2 2 2 3 4 2 2
SLC4A10 WILD-TYPE 37 24 28 27 37 66 16 12 20
'SLC4A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S1653.  Gene #154: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC4A10 MUTATED 4 9 9 4
SLC4A10 WILD-TYPE 96 63 63 117

Figure S618.  Get High-res Image Gene #154: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC4A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0201 (Fisher's exact test), Q value = 0.14

Table S1654.  Gene #154: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC4A10 MUTATED 7 7 8 2 2
SLC4A10 WILD-TYPE 52 68 66 117 36

Figure S619.  Get High-res Image Gene #154: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC4A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 0.24

Table S1655.  Gene #154: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC4A10 MUTATED 9 6 5 2 5
SLC4A10 WILD-TYPE 42 70 56 69 90
'SLC4A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S1656.  Gene #154: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC4A10 MUTATED 8 5 3 1 2 4 0 2 2
SLC4A10 WILD-TYPE 61 43 36 15 51 16 21 36 48
'SLC4A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0215 (Fisher's exact test), Q value = 0.15

Table S1657.  Gene #154: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLC4A10 MUTATED 0 0 1 3 1 3
SLC4A10 WILD-TYPE 13 16 13 8 10 6

Figure S620.  Get High-res Image Gene #154: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SLC4A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1658.  Gene #154: 'SLC4A10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLC4A10 MUTATED 2 0 1 0 2 1 1 1 0
SLC4A10 WILD-TYPE 9 7 6 9 6 6 10 8 5
'RAF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S1659.  Gene #155: 'RAF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RAF1 MUTATED 1 0 0 1 1
RAF1 WILD-TYPE 31 18 46 26 22
'RAF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S1660.  Gene #155: 'RAF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RAF1 MUTATED 2 0 1
RAF1 WILD-TYPE 41 67 35
'RAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00744 (Fisher's exact test), Q value = 0.081

Table S1661.  Gene #155: 'RAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RAF1 MUTATED 0 2 11
RAF1 WILD-TYPE 42 171 136

Figure S621.  Get High-res Image Gene #155: 'RAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S1662.  Gene #155: 'RAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RAF1 MUTATED 5 1 3
RAF1 WILD-TYPE 57 72 72
'RAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.65

Table S1663.  Gene #155: 'RAF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RAF1 MUTATED 1 4 6
RAF1 WILD-TYPE 69 116 94
'RAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S1664.  Gene #155: 'RAF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RAF1 MUTATED 1 3 0 0 0 4 1 1 1
RAF1 WILD-TYPE 40 23 30 29 39 65 19 13 21
'RAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S1665.  Gene #155: 'RAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RAF1 MUTATED 2 4 2 5
RAF1 WILD-TYPE 98 68 70 116
'RAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S1666.  Gene #155: 'RAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RAF1 MUTATED 1 3 3 4 2
RAF1 WILD-TYPE 58 72 71 115 36
'RAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S1667.  Gene #155: 'RAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RAF1 MUTATED 1 3 1 1 6
RAF1 WILD-TYPE 50 73 60 70 89
'RAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S1668.  Gene #155: 'RAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RAF1 MUTATED 2 2 0 0 3 1 0 2 2
RAF1 WILD-TYPE 67 46 39 16 50 19 21 36 48
'KIAA1012 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S1669.  Gene #156: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIAA1012 MUTATED 4 0 1 1 0
KIAA1012 WILD-TYPE 28 18 45 26 23
'KIAA1012 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0863 (Fisher's exact test), Q value = 0.32

Table S1670.  Gene #156: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIAA1012 MUTATED 4 2 0
KIAA1012 WILD-TYPE 39 65 36
'KIAA1012 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S1671.  Gene #156: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA1012 MUTATED 3 7 12
KIAA1012 WILD-TYPE 39 166 135
'KIAA1012 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S1672.  Gene #156: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA1012 MUTATED 7 4 6
KIAA1012 WILD-TYPE 55 69 69
'KIAA1012 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 0.32

Table S1673.  Gene #156: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA1012 MUTATED 2 6 11
KIAA1012 WILD-TYPE 68 114 89
'KIAA1012 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.94

Table S1674.  Gene #156: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA1012 MUTATED 2 1 2 1 3 7 3 0 0
KIAA1012 WILD-TYPE 39 25 28 28 36 62 17 14 22
'KIAA1012 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.93

Table S1675.  Gene #156: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA1012 MUTATED 5 6 6 6
KIAA1012 WILD-TYPE 95 66 66 115
'KIAA1012 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S1676.  Gene #156: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA1012 MUTATED 4 5 8 3 3
KIAA1012 WILD-TYPE 55 70 66 116 35
'KIAA1012 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.65

Table S1677.  Gene #156: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA1012 MUTATED 3 9 2 3 6
KIAA1012 WILD-TYPE 48 67 59 68 89
'KIAA1012 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S1678.  Gene #156: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA1012 MUTATED 5 6 2 3 1 1 1 2 2
KIAA1012 WILD-TYPE 64 42 37 13 52 19 20 36 48
'KIAA1012 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.97

Table S1679.  Gene #156: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIAA1012 MUTATED 0 1 0 1 1 1
KIAA1012 WILD-TYPE 13 15 14 10 10 8
'KIAA1012 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.95

Table S1680.  Gene #156: 'KIAA1012 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIAA1012 MUTATED 2 0 0 0 0 1 1 0 0
KIAA1012 WILD-TYPE 9 7 7 9 8 6 10 9 5
'FAM9A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.16

Table S1681.  Gene #157: 'FAM9A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM9A MUTATED 1 1 8
FAM9A WILD-TYPE 41 172 139

Figure S622.  Get High-res Image Gene #157: 'FAM9A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM9A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S1682.  Gene #157: 'FAM9A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM9A MUTATED 3 1 5
FAM9A WILD-TYPE 59 72 70
'FAM9A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S1683.  Gene #157: 'FAM9A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM9A MUTATED 1 2 5
FAM9A WILD-TYPE 69 118 95
'FAM9A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S1684.  Gene #157: 'FAM9A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM9A MUTATED 0 0 1 1 0 4 2 0 0
FAM9A WILD-TYPE 41 26 29 28 39 65 18 14 22
'FAM9A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S1685.  Gene #157: 'FAM9A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM9A MUTATED 1 4 4 2
FAM9A WILD-TYPE 99 68 68 119
'FAM9A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.13

Table S1686.  Gene #157: 'FAM9A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM9A MUTATED 1 1 7 1 1
FAM9A WILD-TYPE 58 74 67 118 37

Figure S623.  Get High-res Image Gene #157: 'FAM9A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM9A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.14

Table S1687.  Gene #157: 'FAM9A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM9A MUTATED 0 7 2 1 1
FAM9A WILD-TYPE 51 69 59 70 94

Figure S624.  Get High-res Image Gene #157: 'FAM9A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FAM9A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00361 (Fisher's exact test), Q value = 0.053

Table S1688.  Gene #157: 'FAM9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM9A MUTATED 1 2 0 4 3 0 0 1 0
FAM9A WILD-TYPE 68 46 39 12 50 20 21 37 50

Figure S625.  Get High-res Image Gene #157: 'FAM9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S1689.  Gene #157: 'FAM9A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FAM9A MUTATED 1 0 1 0 4 0
FAM9A WILD-TYPE 12 16 13 11 7 9

Figure S626.  Get High-res Image Gene #157: 'FAM9A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FAM9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S1690.  Gene #157: 'FAM9A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FAM9A MUTATED 0 0 1 1 2 1 1 0 0
FAM9A WILD-TYPE 11 7 6 8 6 6 10 9 5
'F8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00586 (Fisher's exact test), Q value = 0.072

Table S1691.  Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
F8 MUTATED 6 1 0 2 0
F8 WILD-TYPE 26 17 46 25 23

Figure S627.  Get High-res Image Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'F8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0558 (Fisher's exact test), Q value = 0.25

Table S1692.  Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
F8 MUTATED 6 2 1
F8 WILD-TYPE 37 65 35
'F8 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0048

Table S1693.  Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
F8 MUTATED 2 7 26
F8 WILD-TYPE 40 166 121

Figure S628.  Get High-res Image Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'F8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S1694.  Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
F8 MUTATED 11 5 10
F8 WILD-TYPE 51 68 65
'F8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.54

Table S1695.  Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
F8 MUTATED 4 12 14
F8 WILD-TYPE 66 108 86
'F8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S1696.  Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
F8 MUTATED 5 3 1 3 4 10 1 2 1
F8 WILD-TYPE 36 23 29 26 35 59 19 12 21
'F8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 0.22

Table S1697.  Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
F8 MUTATED 5 13 7 10
F8 WILD-TYPE 95 59 65 111

Figure S629.  Get High-res Image Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'F8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S1698.  Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
F8 MUTATED 4 4 17 4 6
F8 WILD-TYPE 55 71 57 115 32

Figure S630.  Get High-res Image Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'F8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.4

Table S1699.  Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
F8 MUTATED 4 13 5 3 9
F8 WILD-TYPE 47 63 56 68 86
'F8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.12

Table S1700.  Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
F8 MUTATED 5 5 2 6 5 3 0 6 2
F8 WILD-TYPE 64 43 37 10 48 17 21 32 48

Figure S631.  Get High-res Image Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00143 (Fisher's exact test), Q value = 0.031

Table S1701.  Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
F8 MUTATED 0 0 1 1 5 0
F8 WILD-TYPE 13 16 13 10 6 9

Figure S632.  Get High-res Image Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S1702.  Gene #158: 'F8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
F8 MUTATED 0 0 0 3 1 2 1 0 0
F8 WILD-TYPE 11 7 7 6 7 5 10 9 5
'TUBE1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1703.  Gene #159: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TUBE1 MUTATED 1 0 1 1 0
TUBE1 WILD-TYPE 31 18 45 26 23
'TUBE1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S1704.  Gene #159: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TUBE1 MUTATED 1 2 0
TUBE1 WILD-TYPE 42 65 36
'TUBE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00297 (Fisher's exact test), Q value = 0.047

Table S1705.  Gene #159: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TUBE1 MUTATED 0 1 10
TUBE1 WILD-TYPE 42 172 137

Figure S633.  Get High-res Image Gene #159: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TUBE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S1706.  Gene #159: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TUBE1 MUTATED 2 1 6
TUBE1 WILD-TYPE 60 72 69
'TUBE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S1707.  Gene #159: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TUBE1 MUTATED 1 2 5
TUBE1 WILD-TYPE 69 118 95
'TUBE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S1708.  Gene #159: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TUBE1 MUTATED 2 1 1 0 0 2 2 0 0
TUBE1 WILD-TYPE 39 25 29 29 39 67 18 14 22
'TUBE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.53

Table S1709.  Gene #159: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TUBE1 MUTATED 2 5 2 2
TUBE1 WILD-TYPE 98 67 70 119
'TUBE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S1710.  Gene #159: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TUBE1 MUTATED 1 1 6 2 1
TUBE1 WILD-TYPE 58 74 68 117 37
'TUBE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0851 (Fisher's exact test), Q value = 0.32

Table S1711.  Gene #159: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TUBE1 MUTATED 1 6 1 0 3
TUBE1 WILD-TYPE 50 70 60 71 92
'TUBE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00243 (Fisher's exact test), Q value = 0.042

Table S1712.  Gene #159: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TUBE1 MUTATED 1 2 2 4 0 1 0 1 0
TUBE1 WILD-TYPE 68 46 37 12 53 19 21 37 50

Figure S634.  Get High-res Image Gene #159: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OXSM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0968 (Fisher's exact test), Q value = 0.34

Table S1713.  Gene #160: 'OXSM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OXSM MUTATED 3 0 0 1 0
OXSM WILD-TYPE 29 18 46 26 23
'OXSM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00966 (Fisher's exact test), Q value = 0.093

Table S1714.  Gene #160: 'OXSM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OXSM MUTATED 4 0 0
OXSM WILD-TYPE 39 67 36

Figure S635.  Get High-res Image Gene #160: 'OXSM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'OXSM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S1715.  Gene #160: 'OXSM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OXSM MUTATED 1 2 7
OXSM WILD-TYPE 41 171 140
'OXSM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S1716.  Gene #160: 'OXSM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OXSM MUTATED 1 1 4
OXSM WILD-TYPE 61 72 71
'OXSM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.99

Table S1717.  Gene #160: 'OXSM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OXSM MUTATED 1 4 4
OXSM WILD-TYPE 69 116 96
'OXSM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S1718.  Gene #160: 'OXSM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OXSM MUTATED 1 1 2 0 1 2 1 0 1
OXSM WILD-TYPE 40 25 28 29 38 67 19 14 21
'OXSM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S1719.  Gene #160: 'OXSM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OXSM MUTATED 1 3 2 4
OXSM WILD-TYPE 99 69 70 117
'OXSM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S1720.  Gene #160: 'OXSM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OXSM MUTATED 1 1 3 1 4
OXSM WILD-TYPE 58 74 71 118 34

Figure S636.  Get High-res Image Gene #160: 'OXSM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OXSM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.9

Table S1721.  Gene #160: 'OXSM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OXSM MUTATED 1 2 0 1 4
OXSM WILD-TYPE 50 74 61 70 91
'OXSM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0574 (Fisher's exact test), Q value = 0.26

Table S1722.  Gene #160: 'OXSM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OXSM MUTATED 2 1 0 0 0 1 0 4 0
OXSM WILD-TYPE 67 47 39 16 53 19 21 34 50
'FHOD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00068 (Fisher's exact test), Q value = 0.019

Table S1723.  Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FHOD3 MUTATED 7 0 0 2 0
FHOD3 WILD-TYPE 25 18 46 25 23

Figure S637.  Get High-res Image Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FHOD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00676 (Fisher's exact test), Q value = 0.077

Table S1724.  Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FHOD3 MUTATED 7 1 1
FHOD3 WILD-TYPE 36 66 35

Figure S638.  Get High-res Image Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1725.  Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FHOD3 MUTATED 2 2 23
FHOD3 WILD-TYPE 40 171 124

Figure S639.  Get High-res Image Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FHOD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0388 (Fisher's exact test), Q value = 0.21

Table S1726.  Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FHOD3 MUTATED 9 2 7
FHOD3 WILD-TYPE 53 71 68

Figure S640.  Get High-res Image Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FHOD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 0.24

Table S1727.  Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FHOD3 MUTATED 3 7 14
FHOD3 WILD-TYPE 67 113 86
'FHOD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S1728.  Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FHOD3 MUTATED 2 0 1 3 2 9 6 1 0
FHOD3 WILD-TYPE 39 26 29 26 37 60 14 13 22

Figure S641.  Get High-res Image Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.16

Table S1729.  Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FHOD3 MUTATED 2 9 8 8
FHOD3 WILD-TYPE 98 63 64 113

Figure S642.  Get High-res Image Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FHOD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.014

Table S1730.  Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FHOD3 MUTATED 2 2 14 4 5
FHOD3 WILD-TYPE 57 73 60 115 33

Figure S643.  Get High-res Image Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00347 (Fisher's exact test), Q value = 0.052

Table S1731.  Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FHOD3 MUTATED 1 13 1 3 6
FHOD3 WILD-TYPE 50 63 60 68 89

Figure S644.  Get High-res Image Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00027 (Fisher's exact test), Q value = 0.011

Table S1732.  Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FHOD3 MUTATED 3 5 1 6 2 2 0 5 0
FHOD3 WILD-TYPE 66 43 38 10 51 18 21 33 50

Figure S645.  Get High-res Image Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00139 (Fisher's exact test), Q value = 0.031

Table S1733.  Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FHOD3 MUTATED 0 0 1 1 5 0
FHOD3 WILD-TYPE 13 16 13 10 6 9

Figure S646.  Get High-res Image Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S1734.  Gene #161: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FHOD3 MUTATED 0 0 0 2 1 1 3 0 0
FHOD3 WILD-TYPE 11 7 7 7 7 6 8 9 5
'MMP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0642 (Fisher's exact test), Q value = 0.27

Table S1735.  Gene #162: 'MMP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MMP8 MUTATED 2 2 8
MMP8 WILD-TYPE 40 171 139
'MMP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S1736.  Gene #162: 'MMP8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MMP8 MUTATED 4 1 6
MMP8 WILD-TYPE 58 72 69
'MMP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S1737.  Gene #162: 'MMP8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MMP8 MUTATED 1 7 2
MMP8 WILD-TYPE 69 113 98
'MMP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0849 (Fisher's exact test), Q value = 0.32

Table S1738.  Gene #162: 'MMP8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MMP8 MUTATED 0 3 1 3 0 2 1 0 0
MMP8 WILD-TYPE 41 23 29 26 39 67 19 14 22
'MMP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S1739.  Gene #162: 'MMP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MMP8 MUTATED 2 5 3 2
MMP8 WILD-TYPE 98 67 69 119
'MMP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.88

Table S1740.  Gene #162: 'MMP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MMP8 MUTATED 3 2 4 3 0
MMP8 WILD-TYPE 56 73 70 116 38
'MMP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0395 (Fisher's exact test), Q value = 0.21

Table S1741.  Gene #162: 'MMP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MMP8 MUTATED 0 6 3 0 3
MMP8 WILD-TYPE 51 70 58 71 92

Figure S647.  Get High-res Image Gene #162: 'MMP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MMP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S1742.  Gene #162: 'MMP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MMP8 MUTATED 1 2 2 3 1 1 0 1 1
MMP8 WILD-TYPE 68 46 37 13 52 19 21 37 49
'MMP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.52

Table S1743.  Gene #162: 'MMP8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MMP8 MUTATED 0 1 0 0 2 0
MMP8 WILD-TYPE 13 15 14 11 9 9
'MMP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S1744.  Gene #162: 'MMP8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MMP8 MUTATED 1 0 0 1 1 0 0 0 0
MMP8 WILD-TYPE 10 7 7 8 7 7 11 9 5
'SGK269 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00114 (Fisher's exact test), Q value = 0.027

Table S1745.  Gene #163: 'SGK269 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SGK269 MUTATED 1 3 16
SGK269 WILD-TYPE 41 170 131

Figure S648.  Get High-res Image Gene #163: 'SGK269 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SGK269 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.2

Table S1746.  Gene #163: 'SGK269 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SGK269 MUTATED 6 2 11
SGK269 WILD-TYPE 56 71 64

Figure S649.  Get High-res Image Gene #163: 'SGK269 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SGK269 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 0.26

Table S1747.  Gene #163: 'SGK269 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SGK269 MUTATED 3 4 11
SGK269 WILD-TYPE 67 116 89
'SGK269 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0831 (Fisher's exact test), Q value = 0.31

Table S1748.  Gene #163: 'SGK269 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SGK269 MUTATED 2 1 0 1 1 8 2 3 0
SGK269 WILD-TYPE 39 25 30 28 38 61 18 11 22
'SGK269 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00066 (Fisher's exact test), Q value = 0.019

Table S1749.  Gene #163: 'SGK269 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SGK269 MUTATED 3 9 7 1
SGK269 WILD-TYPE 97 63 65 120

Figure S650.  Get High-res Image Gene #163: 'SGK269 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SGK269 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S1750.  Gene #163: 'SGK269 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SGK269 MUTATED 2 5 12 0 1
SGK269 WILD-TYPE 57 70 62 119 37

Figure S651.  Get High-res Image Gene #163: 'SGK269 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SGK269 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S1751.  Gene #163: 'SGK269 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SGK269 MUTATED 0 14 5 0 1
SGK269 WILD-TYPE 51 62 56 71 94

Figure S652.  Get High-res Image Gene #163: 'SGK269 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SGK269 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00127 (Fisher's exact test), Q value = 0.029

Table S1752.  Gene #163: 'SGK269 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SGK269 MUTATED 6 5 2 5 1 0 0 1 0
SGK269 WILD-TYPE 63 43 37 11 52 20 21 37 50

Figure S653.  Get High-res Image Gene #163: 'SGK269 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SGK269 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S1753.  Gene #163: 'SGK269 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SGK269 MUTATED 1 0 2 1 2 0
SGK269 WILD-TYPE 12 16 12 10 9 9
'SGK269 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 0.99

Table S1754.  Gene #163: 'SGK269 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SGK269 MUTATED 0 0 1 1 2 0 1 1 0
SGK269 WILD-TYPE 11 7 6 8 6 7 10 8 5
'CLSPN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1755.  Gene #164: 'CLSPN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CLSPN MUTATED 2 0 1 1 0
CLSPN WILD-TYPE 30 18 45 26 23
'CLSPN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1756.  Gene #164: 'CLSPN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CLSPN MUTATED 1 2 1
CLSPN WILD-TYPE 42 65 35
'CLSPN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0476 (Fisher's exact test), Q value = 0.23

Table S1757.  Gene #164: 'CLSPN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CLSPN MUTATED 7 9 14
CLSPN WILD-TYPE 35 164 133

Figure S654.  Get High-res Image Gene #164: 'CLSPN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CLSPN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0702 (Fisher's exact test), Q value = 0.29

Table S1758.  Gene #164: 'CLSPN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CLSPN MUTATED 13 6 7
CLSPN WILD-TYPE 49 67 68
'CLSPN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.62

Table S1759.  Gene #164: 'CLSPN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CLSPN MUTATED 4 11 13
CLSPN WILD-TYPE 66 109 87
'CLSPN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S1760.  Gene #164: 'CLSPN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CLSPN MUTATED 5 1 1 4 2 9 0 3 3
CLSPN WILD-TYPE 36 25 29 25 37 60 20 11 19
'CLSPN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0197 (Fisher's exact test), Q value = 0.14

Table S1761.  Gene #164: 'CLSPN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CLSPN MUTATED 10 8 9 3
CLSPN WILD-TYPE 90 64 63 118

Figure S655.  Get High-res Image Gene #164: 'CLSPN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CLSPN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00764 (Fisher's exact test), Q value = 0.082

Table S1762.  Gene #164: 'CLSPN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CLSPN MUTATED 9 9 8 3 1
CLSPN WILD-TYPE 50 66 66 116 37

Figure S656.  Get High-res Image Gene #164: 'CLSPN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CLSPN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.1

Table S1763.  Gene #164: 'CLSPN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CLSPN MUTATED 5 6 11 5 2
CLSPN WILD-TYPE 46 70 50 66 93

Figure S657.  Get High-res Image Gene #164: 'CLSPN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CLSPN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0946 (Fisher's exact test), Q value = 0.34

Table S1764.  Gene #164: 'CLSPN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CLSPN MUTATED 6 4 7 2 7 1 0 1 1
CLSPN WILD-TYPE 63 44 32 14 46 19 21 37 49
'CLSPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.91

Table S1765.  Gene #164: 'CLSPN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CLSPN MUTATED 1 4 1 3 1 1
CLSPN WILD-TYPE 12 12 13 8 10 8
'CLSPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S1766.  Gene #164: 'CLSPN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CLSPN MUTATED 3 2 0 1 1 1 2 1 0
CLSPN WILD-TYPE 8 5 7 8 7 6 9 8 5
'LATS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S1767.  Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LATS1 MUTATED 3 0 1 2 0
LATS1 WILD-TYPE 29 18 45 25 23
'LATS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.88

Table S1768.  Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LATS1 MUTATED 3 2 1
LATS1 WILD-TYPE 40 65 35
'LATS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00491 (Fisher's exact test), Q value = 0.065

Table S1769.  Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LATS1 MUTATED 1 3 14
LATS1 WILD-TYPE 41 170 133

Figure S658.  Get High-res Image Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LATS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00421 (Fisher's exact test), Q value = 0.059

Table S1770.  Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LATS1 MUTATED 3 0 9
LATS1 WILD-TYPE 59 73 66

Figure S659.  Get High-res Image Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LATS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S1771.  Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LATS1 MUTATED 2 4 8
LATS1 WILD-TYPE 68 116 92
'LATS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0699 (Fisher's exact test), Q value = 0.29

Table S1772.  Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LATS1 MUTATED 0 1 0 2 1 7 3 0 0
LATS1 WILD-TYPE 41 25 30 27 38 62 17 14 22
'LATS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 0.21

Table S1773.  Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LATS1 MUTATED 1 7 5 5
LATS1 WILD-TYPE 99 65 67 116

Figure S660.  Get High-res Image Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LATS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00023 (Fisher's exact test), Q value = 0.0098

Table S1774.  Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LATS1 MUTATED 2 0 10 2 4
LATS1 WILD-TYPE 57 75 64 117 34

Figure S661.  Get High-res Image Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LATS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.19

Table S1775.  Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LATS1 MUTATED 0 9 2 2 4
LATS1 WILD-TYPE 51 67 59 69 91

Figure S662.  Get High-res Image Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LATS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00095 (Fisher's exact test), Q value = 0.024

Table S1776.  Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LATS1 MUTATED 2 3 0 5 2 1 0 4 0
LATS1 WILD-TYPE 67 45 39 11 51 19 21 34 50

Figure S663.  Get High-res Image Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LATS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.095

Table S1777.  Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LATS1 MUTATED 0 0 1 1 4 0
LATS1 WILD-TYPE 13 16 13 10 7 9

Figure S664.  Get High-res Image Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'LATS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S1778.  Gene #165: 'LATS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LATS1 MUTATED 0 0 0 2 2 0 2 0 0
LATS1 WILD-TYPE 11 7 7 7 6 7 9 9 5
'SCD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S1779.  Gene #166: 'SCD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SCD5 MUTATED 2 0 5
SCD5 WILD-TYPE 40 173 142

Figure S665.  Get High-res Image Gene #166: 'SCD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SCD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S1780.  Gene #166: 'SCD5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SCD5 MUTATED 2 1 2
SCD5 WILD-TYPE 60 72 73
'SCD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S1781.  Gene #166: 'SCD5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SCD5 MUTATED 0 1 4
SCD5 WILD-TYPE 70 119 96
'SCD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S1782.  Gene #166: 'SCD5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SCD5 MUTATED 0 0 0 0 2 2 1 0 0
SCD5 WILD-TYPE 41 26 30 29 37 67 19 14 22
'SCD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S1783.  Gene #166: 'SCD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SCD5 MUTATED 2 2 2 1
SCD5 WILD-TYPE 98 70 70 120
'SCD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S1784.  Gene #166: 'SCD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SCD5 MUTATED 0 1 4 1 1
SCD5 WILD-TYPE 59 74 70 118 37
'SCD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S1785.  Gene #166: 'SCD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SCD5 MUTATED 0 3 1 1 2
SCD5 WILD-TYPE 51 73 60 70 93
'SCD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S1786.  Gene #166: 'SCD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SCD5 MUTATED 2 1 0 0 2 1 0 1 0
SCD5 WILD-TYPE 67 47 39 16 51 19 21 37 50
'DDX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S1787.  Gene #167: 'DDX5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DDX5 MUTATED 1 2 6
DDX5 WILD-TYPE 41 171 141
'DDX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.73

Table S1788.  Gene #167: 'DDX5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DDX5 MUTATED 2 1 4
DDX5 WILD-TYPE 60 72 71
'DDX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.18

Table S1789.  Gene #167: 'DDX5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DDX5 MUTATED 2 0 5
DDX5 WILD-TYPE 68 120 95

Figure S666.  Get High-res Image Gene #167: 'DDX5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DDX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S1790.  Gene #167: 'DDX5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DDX5 MUTATED 1 0 0 0 1 3 1 1 0
DDX5 WILD-TYPE 40 26 30 29 38 66 19 13 22
'DDX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S1791.  Gene #167: 'DDX5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DDX5 MUTATED 2 4 1 2
DDX5 WILD-TYPE 98 68 71 119
'DDX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0467 (Fisher's exact test), Q value = 0.23

Table S1792.  Gene #167: 'DDX5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DDX5 MUTATED 1 2 4 0 2
DDX5 WILD-TYPE 58 73 70 119 36

Figure S667.  Get High-res Image Gene #167: 'DDX5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DDX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S1793.  Gene #167: 'DDX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DDX5 MUTATED 1 4 1 0 2
DDX5 WILD-TYPE 50 72 60 71 93
'DDX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S1794.  Gene #167: 'DDX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DDX5 MUTATED 1 1 1 0 2 1 0 2 0
DDX5 WILD-TYPE 68 47 38 16 51 19 21 36 50
'TAF7L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S1795.  Gene #168: 'TAF7L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TAF7L MUTATED 0 5 6
TAF7L WILD-TYPE 42 168 141
'TAF7L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1796.  Gene #168: 'TAF7L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TAF7L MUTATED 3 2 4
TAF7L WILD-TYPE 59 71 71
'TAF7L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1797.  Gene #168: 'TAF7L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TAF7L MUTATED 1 3 4
TAF7L WILD-TYPE 69 117 96
'TAF7L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S1798.  Gene #168: 'TAF7L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TAF7L MUTATED 1 0 1 1 0 3 1 1 0
TAF7L WILD-TYPE 40 26 29 28 39 66 19 13 22
'TAF7L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S1799.  Gene #168: 'TAF7L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TAF7L MUTATED 3 4 2 2
TAF7L WILD-TYPE 97 68 70 119
'TAF7L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.57

Table S1800.  Gene #168: 'TAF7L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TAF7L MUTATED 1 3 5 2 0
TAF7L WILD-TYPE 58 72 69 117 38
'TAF7L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S1801.  Gene #168: 'TAF7L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TAF7L MUTATED 1 6 1 1 2
TAF7L WILD-TYPE 50 70 60 70 93
'TAF7L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S1802.  Gene #168: 'TAF7L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TAF7L MUTATED 4 1 2 3 0 1 0 0 0
TAF7L WILD-TYPE 65 47 37 13 53 19 21 38 50

Figure S668.  Get High-res Image Gene #168: 'TAF7L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TAF7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.56

Table S1803.  Gene #168: 'TAF7L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TAF7L MUTATED 1 0 0 1 2 0
TAF7L WILD-TYPE 12 16 14 10 9 9
'TAF7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S1804.  Gene #168: 'TAF7L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TAF7L MUTATED 0 0 1 2 1 0 0 0 0
TAF7L WILD-TYPE 11 7 6 7 7 7 11 9 5
'ERBB4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0732 (Fisher's exact test), Q value = 0.29

Table S1805.  Gene #169: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ERBB4 MUTATED 6 2 1 5 3
ERBB4 WILD-TYPE 26 16 45 22 20
'ERBB4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S1806.  Gene #169: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ERBB4 MUTATED 8 4 5
ERBB4 WILD-TYPE 35 63 31
'ERBB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.41

Table S1807.  Gene #169: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ERBB4 MUTATED 3 20 26
ERBB4 WILD-TYPE 39 153 121
'ERBB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.73

Table S1808.  Gene #169: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ERBB4 MUTATED 13 9 12
ERBB4 WILD-TYPE 49 64 63
'ERBB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S1809.  Gene #169: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ERBB4 MUTATED 7 17 18
ERBB4 WILD-TYPE 63 103 82
'ERBB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S1810.  Gene #169: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ERBB4 MUTATED 6 2 3 5 5 12 3 2 4
ERBB4 WILD-TYPE 35 24 27 24 34 57 17 12 18
'ERBB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S1811.  Gene #169: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ERBB4 MUTATED 11 10 14 16
ERBB4 WILD-TYPE 89 62 58 105
'ERBB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S1812.  Gene #169: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ERBB4 MUTATED 11 9 13 11 7
ERBB4 WILD-TYPE 48 66 61 108 31
'ERBB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 0.34

Table S1813.  Gene #169: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ERBB4 MUTATED 8 12 13 4 12
ERBB4 WILD-TYPE 43 64 48 67 83
'ERBB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0197 (Fisher's exact test), Q value = 0.14

Table S1814.  Gene #169: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ERBB4 MUTATED 7 14 2 4 5 5 3 5 4
ERBB4 WILD-TYPE 62 34 37 12 48 15 18 33 46

Figure S669.  Get High-res Image Gene #169: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ERBB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S1815.  Gene #169: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ERBB4 MUTATED 2 1 1 2 1 1
ERBB4 WILD-TYPE 11 15 13 9 10 8
'ERBB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S1816.  Gene #169: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ERBB4 MUTATED 0 1 1 2 1 1 2 0 0
ERBB4 WILD-TYPE 11 6 6 7 7 6 9 9 5
'HNF1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S1817.  Gene #170: 'HNF1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HNF1B MUTATED 0 5 4
HNF1B WILD-TYPE 42 168 143
'HNF1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 0.34

Table S1818.  Gene #170: 'HNF1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HNF1B MUTATED 1 1 6
HNF1B WILD-TYPE 61 72 69
'HNF1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.96

Table S1819.  Gene #170: 'HNF1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HNF1B MUTATED 3 3 2
HNF1B WILD-TYPE 67 117 98
'HNF1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S1820.  Gene #170: 'HNF1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HNF1B MUTATED 1 2 1 0 0 2 0 2 0
HNF1B WILD-TYPE 40 24 29 29 39 67 20 12 22
'HNF1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S1821.  Gene #170: 'HNF1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HNF1B MUTATED 3 4 1 1
HNF1B WILD-TYPE 97 68 71 120
'HNF1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S1822.  Gene #170: 'HNF1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HNF1B MUTATED 1 3 4 1 0
HNF1B WILD-TYPE 58 72 70 118 38
'HNF1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0584 (Fisher's exact test), Q value = 0.26

Table S1823.  Gene #170: 'HNF1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HNF1B MUTATED 3 4 1 1 0
HNF1B WILD-TYPE 48 72 60 70 95
'HNF1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S1824.  Gene #170: 'HNF1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HNF1B MUTATED 4 1 1 2 1 0 0 0 0
HNF1B WILD-TYPE 65 47 38 14 52 20 21 38 50
'HNF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1825.  Gene #170: 'HNF1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HNF1B MUTATED 1 0 1 0 1 0
HNF1B WILD-TYPE 12 16 13 11 10 9
'HNF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.56

Table S1826.  Gene #170: 'HNF1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HNF1B MUTATED 0 0 0 1 1 0 0 0 1
HNF1B WILD-TYPE 11 7 7 8 7 7 11 9 4
'OR7C2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.52

Table S1827.  Gene #171: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR7C2 MUTATED 0 3 7
OR7C2 WILD-TYPE 42 170 140
'OR7C2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1828.  Gene #171: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR7C2 MUTATED 3 3 2
OR7C2 WILD-TYPE 59 70 73
'OR7C2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0685 (Fisher's exact test), Q value = 0.28

Table S1829.  Gene #171: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR7C2 MUTATED 0 3 6
OR7C2 WILD-TYPE 70 117 94
'OR7C2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S1830.  Gene #171: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR7C2 MUTATED 2 0 1 0 0 4 0 1 1
OR7C2 WILD-TYPE 39 26 29 29 39 65 20 13 21
'OR7C2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S1831.  Gene #171: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR7C2 MUTATED 2 2 4 2
OR7C2 WILD-TYPE 98 70 68 119
'OR7C2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S1832.  Gene #171: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR7C2 MUTATED 3 1 4 1 1
OR7C2 WILD-TYPE 56 74 70 118 37
'OR7C2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S1833.  Gene #171: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR7C2 MUTATED 3 3 2 0 2
OR7C2 WILD-TYPE 48 73 59 71 93
'OR7C2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S1834.  Gene #171: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR7C2 MUTATED 2 3 1 1 0 2 0 1 0
OR7C2 WILD-TYPE 67 45 38 15 53 18 21 37 50
'KLHL10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S1835.  Gene #172: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KLHL10 MUTATED 2 7 10
KLHL10 WILD-TYPE 40 166 137
'KLHL10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.92

Table S1836.  Gene #172: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KLHL10 MUTATED 7 5 6
KLHL10 WILD-TYPE 55 68 69
'KLHL10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.37

Table S1837.  Gene #172: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KLHL10 MUTATED 3 4 10
KLHL10 WILD-TYPE 67 116 90
'KLHL10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S1838.  Gene #172: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KLHL10 MUTATED 2 0 2 1 1 10 1 0 0
KLHL10 WILD-TYPE 39 26 28 28 38 59 19 14 22
'KLHL10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00256 (Fisher's exact test), Q value = 0.043

Table S1839.  Gene #172: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KLHL10 MUTATED 7 5 6 0
KLHL10 WILD-TYPE 93 67 66 121

Figure S670.  Get High-res Image Gene #172: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KLHL10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S1840.  Gene #172: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KLHL10 MUTATED 2 6 10 0 0
KLHL10 WILD-TYPE 57 69 64 119 38

Figure S671.  Get High-res Image Gene #172: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KLHL10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.002 (Fisher's exact test), Q value = 0.038

Table S1841.  Gene #172: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KLHL10 MUTATED 2 10 3 4 0
KLHL10 WILD-TYPE 49 66 58 67 95

Figure S672.  Get High-res Image Gene #172: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KLHL10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S1842.  Gene #172: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KLHL10 MUTATED 5 6 3 3 2 0 0 0 0
KLHL10 WILD-TYPE 64 42 36 13 51 20 21 38 50

Figure S673.  Get High-res Image Gene #172: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KLHL10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S1843.  Gene #172: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KLHL10 MUTATED 1 1 1 0 2 0
KLHL10 WILD-TYPE 12 15 13 11 9 9
'KLHL10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S1844.  Gene #172: 'KLHL10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KLHL10 MUTATED 1 0 0 0 1 0 2 1 0
KLHL10 WILD-TYPE 10 7 7 9 7 7 9 8 5
'FBLN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S1845.  Gene #173: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FBLN5 MUTATED 2 3 3
FBLN5 WILD-TYPE 40 170 144
'FBLN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1846.  Gene #173: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FBLN5 MUTATED 2 3 3
FBLN5 WILD-TYPE 60 70 72
'FBLN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S1847.  Gene #173: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FBLN5 MUTATED 0 4 3
FBLN5 WILD-TYPE 70 116 97
'FBLN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.63

Table S1848.  Gene #173: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FBLN5 MUTATED 1 0 1 1 0 1 0 1 2
FBLN5 WILD-TYPE 40 26 29 28 39 68 20 13 20
'FBLN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.22

Table S1849.  Gene #173: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FBLN5 MUTATED 3 4 1 0
FBLN5 WILD-TYPE 97 68 71 121

Figure S674.  Get High-res Image Gene #173: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FBLN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0437 (Fisher's exact test), Q value = 0.22

Table S1850.  Gene #173: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FBLN5 MUTATED 1 4 3 0 0
FBLN5 WILD-TYPE 58 71 71 119 38

Figure S675.  Get High-res Image Gene #173: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBLN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S1851.  Gene #173: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FBLN5 MUTATED 3 2 1 2 0
FBLN5 WILD-TYPE 48 74 60 69 95
'FBLN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00302 (Fisher's exact test), Q value = 0.048

Table S1852.  Gene #173: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FBLN5 MUTATED 1 1 1 2 0 3 0 0 0
FBLN5 WILD-TYPE 68 47 38 14 53 17 21 38 50

Figure S676.  Get High-res Image Gene #173: 'FBLN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GPX6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S1853.  Gene #174: 'GPX6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GPX6 MUTATED 0 3 6
GPX6 WILD-TYPE 42 170 141
'GPX6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S1854.  Gene #174: 'GPX6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GPX6 MUTATED 3 3 1
GPX6 WILD-TYPE 59 70 74
'GPX6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S1855.  Gene #174: 'GPX6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GPX6 MUTATED 1 5 3
GPX6 WILD-TYPE 69 115 97
'GPX6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S1856.  Gene #174: 'GPX6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GPX6 MUTATED 2 1 1 2 1 1 0 0 1
GPX6 WILD-TYPE 39 25 29 27 38 68 20 14 21
'GPX6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1857.  Gene #174: 'GPX6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GPX6 MUTATED 2 2 2 3
GPX6 WILD-TYPE 98 70 70 118
'GPX6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S1858.  Gene #174: 'GPX6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GPX6 MUTATED 1 2 3 2 1
GPX6 WILD-TYPE 58 73 71 117 37
'GPX6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S1859.  Gene #174: 'GPX6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GPX6 MUTATED 1 3 2 0 3
GPX6 WILD-TYPE 50 73 59 71 92
'GPX6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.73

Table S1860.  Gene #174: 'GPX6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GPX6 MUTATED 1 2 1 1 1 2 0 0 1
GPX6 WILD-TYPE 68 46 38 15 52 18 21 38 49
'GPX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S1861.  Gene #174: 'GPX6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GPX6 MUTATED 0 0 1 2 0 0
GPX6 WILD-TYPE 13 16 13 9 11 9
'GPX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S1862.  Gene #174: 'GPX6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GPX6 MUTATED 0 0 1 0 0 0 2 0 0
GPX6 WILD-TYPE 11 7 6 9 8 7 9 9 5
'PSD MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.099 (Fisher's exact test), Q value = 0.34

Table S1863.  Gene #175: 'PSD MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PSD MUTATED 3 0 0 1 0
PSD WILD-TYPE 29 18 46 26 23
'PSD MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S1864.  Gene #175: 'PSD MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PSD MUTATED 3 1 0
PSD WILD-TYPE 40 66 36
'PSD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S1865.  Gene #175: 'PSD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PSD MUTATED 2 2 11
PSD WILD-TYPE 40 171 136

Figure S677.  Get High-res Image Gene #175: 'PSD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PSD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0944 (Fisher's exact test), Q value = 0.34

Table S1866.  Gene #175: 'PSD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PSD MUTATED 3 1 7
PSD WILD-TYPE 59 72 68
'PSD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S1867.  Gene #175: 'PSD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PSD MUTATED 1 5 6
PSD WILD-TYPE 69 115 94
'PSD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1868.  Gene #175: 'PSD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PSD MUTATED 2 0 2 1 1 3 2 1 0
PSD WILD-TYPE 39 26 28 28 38 66 18 13 22
'PSD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S1869.  Gene #175: 'PSD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PSD MUTATED 2 6 3 5
PSD WILD-TYPE 98 66 69 116
'PSD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0653 (Fisher's exact test), Q value = 0.28

Table S1870.  Gene #175: 'PSD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PSD MUTATED 2 2 6 2 4
PSD WILD-TYPE 57 73 68 117 34
'PSD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.5

Table S1871.  Gene #175: 'PSD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PSD MUTATED 1 6 1 1 6
PSD WILD-TYPE 50 70 60 70 89
'PSD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0315 (Fisher's exact test), Q value = 0.19

Table S1872.  Gene #175: 'PSD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PSD MUTATED 3 2 0 4 1 0 0 3 2
PSD WILD-TYPE 66 46 39 12 52 20 21 35 48

Figure S678.  Get High-res Image Gene #175: 'PSD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S1873.  Gene #175: 'PSD MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PSD MUTATED 1 0 0 0 2 1
PSD WILD-TYPE 12 16 14 11 9 8
'PSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1874.  Gene #175: 'PSD MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PSD MUTATED 1 0 0 1 0 0 1 1 0
PSD WILD-TYPE 10 7 7 8 8 7 10 8 5
'EP400 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00196 (Fisher's exact test), Q value = 0.037

Table S1875.  Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EP400 MUTATED 7 0 0 3 1
EP400 WILD-TYPE 25 18 46 24 22

Figure S679.  Get High-res Image Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EP400 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00239 (Fisher's exact test), Q value = 0.041

Table S1876.  Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EP400 MUTATED 8 1 2
EP400 WILD-TYPE 35 66 34

Figure S680.  Get High-res Image Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EP400 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00228 (Fisher's exact test), Q value = 0.04

Table S1877.  Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EP400 MUTATED 5 8 23
EP400 WILD-TYPE 37 165 124

Figure S681.  Get High-res Image Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EP400 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.25

Table S1878.  Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EP400 MUTATED 4 6 14
EP400 WILD-TYPE 58 67 61
'EP400 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S1879.  Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EP400 MUTATED 6 12 11
EP400 WILD-TYPE 64 108 89
'EP400 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0582 (Fisher's exact test), Q value = 0.26

Table S1880.  Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EP400 MUTATED 0 0 3 3 6 9 3 1 4
EP400 WILD-TYPE 41 26 27 26 33 60 17 13 18
'EP400 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0587 (Fisher's exact test), Q value = 0.26

Table S1881.  Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EP400 MUTATED 5 12 5 14
EP400 WILD-TYPE 95 60 67 107
'EP400 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S1882.  Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EP400 MUTATED 5 5 12 6 8
EP400 WILD-TYPE 54 70 62 113 30

Figure S682.  Get High-res Image Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EP400 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S1883.  Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EP400 MUTATED 3 12 3 5 10
EP400 WILD-TYPE 48 64 58 66 85
'EP400 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S1884.  Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EP400 MUTATED 6 4 0 8 3 2 1 7 2
EP400 WILD-TYPE 63 44 39 8 50 18 20 31 48

Figure S683.  Get High-res Image Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EP400 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S1885.  Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EP400 MUTATED 1 1 0 0 1 1
EP400 WILD-TYPE 12 15 14 11 10 8
'EP400 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.62

Table S1886.  Gene #176: 'EP400 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EP400 MUTATED 0 1 0 1 0 0 0 2 0
EP400 WILD-TYPE 11 6 7 8 8 7 11 7 5
'DHRS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0555 (Fisher's exact test), Q value = 0.25

Table S1887.  Gene #177: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DHRS7 MUTATED 0 2 8
DHRS7 WILD-TYPE 42 171 139
'DHRS7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.94

Table S1888.  Gene #177: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DHRS7 MUTATED 4 2 3
DHRS7 WILD-TYPE 58 71 72
'DHRS7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S1889.  Gene #177: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DHRS7 MUTATED 0 4 5
DHRS7 WILD-TYPE 70 116 95
'DHRS7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0399 (Fisher's exact test), Q value = 0.21

Table S1890.  Gene #177: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DHRS7 MUTATED 0 1 0 0 0 4 2 2 0
DHRS7 WILD-TYPE 41 25 30 29 39 65 18 12 22

Figure S684.  Get High-res Image Gene #177: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'DHRS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S1891.  Gene #177: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DHRS7 MUTATED 1 4 3 2
DHRS7 WILD-TYPE 99 68 69 119
'DHRS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 0.23

Table S1892.  Gene #177: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DHRS7 MUTATED 1 1 6 1 1
DHRS7 WILD-TYPE 58 74 68 118 37

Figure S685.  Get High-res Image Gene #177: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DHRS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 0.27

Table S1893.  Gene #177: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DHRS7 MUTATED 1 6 1 0 2
DHRS7 WILD-TYPE 50 70 60 71 93
'DHRS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.98

Table S1894.  Gene #177: 'DHRS7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DHRS7 MUTATED 2 3 0 1 1 1 0 1 1
DHRS7 WILD-TYPE 67 45 39 15 52 19 21 37 49
'ZNF486 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0698 (Fisher's exact test), Q value = 0.28

Table S1895.  Gene #178: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF486 MUTATED 0 3 9
ZNF486 WILD-TYPE 42 170 138
'ZNF486 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00271 (Fisher's exact test), Q value = 0.044

Table S1896.  Gene #178: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF486 MUTATED 0 1 8
ZNF486 WILD-TYPE 62 72 67

Figure S686.  Get High-res Image Gene #178: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZNF486 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1897.  Gene #178: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF486 MUTATED 1 3 2
ZNF486 WILD-TYPE 69 117 98
'ZNF486 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.78

Table S1898.  Gene #178: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF486 MUTATED 0 1 0 2 1 1 1 0 0
ZNF486 WILD-TYPE 41 25 30 27 38 68 19 14 22
'ZNF486 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.62

Table S1899.  Gene #178: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF486 MUTATED 3 5 2 2
ZNF486 WILD-TYPE 97 67 70 119
'ZNF486 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00116 (Fisher's exact test), Q value = 0.027

Table S1900.  Gene #178: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF486 MUTATED 0 3 7 0 2
ZNF486 WILD-TYPE 59 72 67 119 36

Figure S687.  Get High-res Image Gene #178: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF486 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S1901.  Gene #178: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF486 MUTATED 1 5 2 1 3
ZNF486 WILD-TYPE 50 71 59 70 92
'ZNF486 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00675 (Fisher's exact test), Q value = 0.077

Table S1902.  Gene #178: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF486 MUTATED 1 2 0 3 1 2 2 1 0
ZNF486 WILD-TYPE 68 46 39 13 52 18 19 37 50

Figure S688.  Get High-res Image Gene #178: 'ZNF486 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CLEC4F MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S1903.  Gene #179: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CLEC4F MUTATED 0 0 1 2 0
CLEC4F WILD-TYPE 32 18 45 25 23
'CLEC4F MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S1904.  Gene #179: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CLEC4F MUTATED 2 1 0
CLEC4F WILD-TYPE 41 66 36
'CLEC4F MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.013

Table S1905.  Gene #179: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CLEC4F MUTATED 0 3 16
CLEC4F WILD-TYPE 42 170 131

Figure S689.  Get High-res Image Gene #179: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CLEC4F MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S1906.  Gene #179: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CLEC4F MUTATED 8 3 5
CLEC4F WILD-TYPE 54 70 70
'CLEC4F MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S1907.  Gene #179: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CLEC4F MUTATED 4 5 9
CLEC4F WILD-TYPE 66 115 91
'CLEC4F MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S1908.  Gene #179: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CLEC4F MUTATED 2 1 1 2 2 8 1 1 0
CLEC4F WILD-TYPE 39 25 29 27 37 61 19 13 22
'CLEC4F MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S1909.  Gene #179: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CLEC4F MUTATED 3 7 5 4
CLEC4F WILD-TYPE 97 65 67 117
'CLEC4F MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S1910.  Gene #179: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CLEC4F MUTATED 1 6 7 3 2
CLEC4F WILD-TYPE 58 69 67 116 36
'CLEC4F MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S1911.  Gene #179: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CLEC4F MUTATED 3 8 2 1 4
CLEC4F WILD-TYPE 48 68 59 70 91
'CLEC4F MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S1912.  Gene #179: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CLEC4F MUTATED 5 3 1 3 2 1 0 1 2
CLEC4F WILD-TYPE 64 45 38 13 51 19 21 37 48
'CLEC4F MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S1913.  Gene #179: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CLEC4F MUTATED 0 1 1 0 2 0
CLEC4F WILD-TYPE 13 15 13 11 9 9
'CLEC4F MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.92

Table S1914.  Gene #179: 'CLEC4F MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CLEC4F MUTATED 0 0 0 1 1 0 2 0 0
CLEC4F WILD-TYPE 11 7 7 8 7 7 9 9 5
'MMP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.53

Table S1915.  Gene #180: 'MMP13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MMP13 MUTATED 2 3 7
MMP13 WILD-TYPE 40 170 140
'MMP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S1916.  Gene #180: 'MMP13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MMP13 MUTATED 4 1 6
MMP13 WILD-TYPE 58 72 69
'MMP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S1917.  Gene #180: 'MMP13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MMP13 MUTATED 1 7 5
MMP13 WILD-TYPE 69 113 95
'MMP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S1918.  Gene #180: 'MMP13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MMP13 MUTATED 1 2 1 2 0 4 3 0 0
MMP13 WILD-TYPE 40 24 29 27 39 65 17 14 22
'MMP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00612 (Fisher's exact test), Q value = 0.074

Table S1919.  Gene #180: 'MMP13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MMP13 MUTATED 1 6 5 1
MMP13 WILD-TYPE 99 66 67 120

Figure S690.  Get High-res Image Gene #180: 'MMP13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MMP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S1920.  Gene #180: 'MMP13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MMP13 MUTATED 2 1 8 2 0
MMP13 WILD-TYPE 57 74 66 117 38

Figure S691.  Get High-res Image Gene #180: 'MMP13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MMP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0445 (Fisher's exact test), Q value = 0.22

Table S1921.  Gene #180: 'MMP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MMP13 MUTATED 0 7 3 1 2
MMP13 WILD-TYPE 51 69 58 70 93

Figure S692.  Get High-res Image Gene #180: 'MMP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MMP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0022 (Fisher's exact test), Q value = 0.04

Table S1922.  Gene #180: 'MMP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MMP13 MUTATED 2 5 0 3 1 2 0 0 0
MMP13 WILD-TYPE 67 43 39 13 52 18 21 38 50

Figure S693.  Get High-res Image Gene #180: 'MMP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MMP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S1923.  Gene #180: 'MMP13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MMP13 MUTATED 1 1 1 0 3 0
MMP13 WILD-TYPE 12 15 13 11 8 9
'MMP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S1924.  Gene #180: 'MMP13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MMP13 MUTATED 0 1 0 2 1 0 2 0 0
MMP13 WILD-TYPE 11 6 7 7 7 7 9 9 5
'KRT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S1925.  Gene #181: 'KRT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KRT2 MUTATED 1 5 8
KRT2 WILD-TYPE 41 168 139
'KRT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.97

Table S1926.  Gene #181: 'KRT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KRT2 MUTATED 4 3 6
KRT2 WILD-TYPE 58 70 69
'KRT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0893 (Fisher's exact test), Q value = 0.32

Table S1927.  Gene #181: 'KRT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KRT2 MUTATED 0 6 6
KRT2 WILD-TYPE 70 114 94
'KRT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S1928.  Gene #181: 'KRT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KRT2 MUTATED 5 1 0 2 0 4 0 0 0
KRT2 WILD-TYPE 36 25 30 27 39 65 20 14 22
'KRT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S1929.  Gene #181: 'KRT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KRT2 MUTATED 2 5 6 1
KRT2 WILD-TYPE 98 67 66 120

Figure S694.  Get High-res Image Gene #181: 'KRT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KRT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.097

Table S1930.  Gene #181: 'KRT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KRT2 MUTATED 6 2 5 1 0
KRT2 WILD-TYPE 53 73 69 118 38

Figure S695.  Get High-res Image Gene #181: 'KRT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KRT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 0.19

Table S1931.  Gene #181: 'KRT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KRT2 MUTATED 2 6 4 2 0
KRT2 WILD-TYPE 49 70 57 69 95

Figure S696.  Get High-res Image Gene #181: 'KRT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KRT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0309 (Fisher's exact test), Q value = 0.19

Table S1932.  Gene #181: 'KRT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KRT2 MUTATED 6 4 0 1 1 2 0 0 0
KRT2 WILD-TYPE 63 44 39 15 52 18 21 38 50

Figure S697.  Get High-res Image Gene #181: 'KRT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KRT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S1933.  Gene #181: 'KRT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KRT2 MUTATED 0 1 1 0 1 1
KRT2 WILD-TYPE 13 15 13 11 10 8
'KRT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.88

Table S1934.  Gene #181: 'KRT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KRT2 MUTATED 0 0 1 0 1 1 0 1 0
KRT2 WILD-TYPE 11 7 6 9 7 6 11 8 5
'SLC12A6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S1935.  Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC12A6 MUTATED 2 0 0 2 0
SLC12A6 WILD-TYPE 30 18 46 25 23
'SLC12A6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S1936.  Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC12A6 MUTATED 2 2 0
SLC12A6 WILD-TYPE 41 65 36
'SLC12A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00067 (Fisher's exact test), Q value = 0.019

Table S1937.  Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC12A6 MUTATED 3 2 15
SLC12A6 WILD-TYPE 39 171 132

Figure S698.  Get High-res Image Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC12A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00095 (Fisher's exact test), Q value = 0.024

Table S1938.  Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC12A6 MUTATED 5 0 11
SLC12A6 WILD-TYPE 57 73 64

Figure S699.  Get High-res Image Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SLC12A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S1939.  Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC12A6 MUTATED 3 7 7
SLC12A6 WILD-TYPE 67 113 93
'SLC12A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S1940.  Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC12A6 MUTATED 1 1 2 2 1 5 4 1 0
SLC12A6 WILD-TYPE 40 25 28 27 38 64 16 13 22
'SLC12A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.19

Table S1941.  Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC12A6 MUTATED 3 8 6 3
SLC12A6 WILD-TYPE 97 64 66 118

Figure S700.  Get High-res Image Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC12A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00065 (Fisher's exact test), Q value = 0.019

Table S1942.  Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC12A6 MUTATED 1 3 12 2 2
SLC12A6 WILD-TYPE 58 72 62 117 36

Figure S701.  Get High-res Image Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC12A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S1943.  Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC12A6 MUTATED 1 13 0 0 5
SLC12A6 WILD-TYPE 50 63 61 71 90

Figure S702.  Get High-res Image Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SLC12A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0542 (Fisher's exact test), Q value = 0.25

Table S1944.  Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC12A6 MUTATED 2 5 0 3 4 2 0 2 1
SLC12A6 WILD-TYPE 67 43 39 13 49 18 21 36 49
'SLC12A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.56

Table S1945.  Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLC12A6 MUTATED 0 1 1 1 3 0
SLC12A6 WILD-TYPE 13 15 13 10 8 9
'SLC12A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0603 (Fisher's exact test), Q value = 0.26

Table S1946.  Gene #182: 'SLC12A6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLC12A6 MUTATED 0 0 0 1 1 0 4 0 0
SLC12A6 WILD-TYPE 11 7 7 8 7 7 7 9 5
'PRKCH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0971 (Fisher's exact test), Q value = 0.34

Table S1947.  Gene #183: 'PRKCH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRKCH MUTATED 1 3 9
PRKCH WILD-TYPE 41 170 138
'PRKCH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.73

Table S1948.  Gene #183: 'PRKCH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRKCH MUTATED 5 2 4
PRKCH WILD-TYPE 57 71 71
'PRKCH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S1949.  Gene #183: 'PRKCH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRKCH MUTATED 2 6 4
PRKCH WILD-TYPE 68 114 96
'PRKCH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1950.  Gene #183: 'PRKCH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRKCH MUTATED 3 1 1 2 0 3 0 1 1
PRKCH WILD-TYPE 38 25 29 27 39 66 20 13 21
'PRKCH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S1951.  Gene #183: 'PRKCH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRKCH MUTATED 3 4 4 2
PRKCH WILD-TYPE 97 68 68 119
'PRKCH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.23

Table S1952.  Gene #183: 'PRKCH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRKCH MUTATED 4 1 6 2 0
PRKCH WILD-TYPE 55 74 68 117 38

Figure S703.  Get High-res Image Gene #183: 'PRKCH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PRKCH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.78

Table S1953.  Gene #183: 'PRKCH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRKCH MUTATED 2 5 3 1 2
PRKCH WILD-TYPE 49 71 58 70 93
'PRKCH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S1954.  Gene #183: 'PRKCH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRKCH MUTATED 2 4 3 1 2 1 0 0 0
PRKCH WILD-TYPE 67 44 36 15 51 19 21 38 50
'PRKCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.65

Table S1955.  Gene #183: 'PRKCH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PRKCH MUTATED 0 1 0 1 2 0
PRKCH WILD-TYPE 13 15 14 10 9 9
'PRKCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S1956.  Gene #183: 'PRKCH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PRKCH MUTATED 0 1 0 1 0 0 2 0 0
PRKCH WILD-TYPE 11 6 7 8 8 7 9 9 5
'TUBA4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S1957.  Gene #184: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TUBA4A MUTATED 0 1 8
TUBA4A WILD-TYPE 42 172 139

Figure S704.  Get High-res Image Gene #184: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TUBA4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.53

Table S1958.  Gene #184: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TUBA4A MUTATED 2 1 5
TUBA4A WILD-TYPE 60 72 70
'TUBA4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S1959.  Gene #184: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TUBA4A MUTATED 0 2 3
TUBA4A WILD-TYPE 70 118 97
'TUBA4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.95

Table S1960.  Gene #184: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TUBA4A MUTATED 0 1 0 1 0 3 0 0 0
TUBA4A WILD-TYPE 41 25 30 28 39 66 20 14 22
'TUBA4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.54

Table S1961.  Gene #184: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TUBA4A MUTATED 2 4 2 1
TUBA4A WILD-TYPE 98 68 70 120
'TUBA4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00388 (Fisher's exact test), Q value = 0.056

Table S1962.  Gene #184: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TUBA4A MUTATED 0 2 6 0 1
TUBA4A WILD-TYPE 59 73 68 119 37

Figure S705.  Get High-res Image Gene #184: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TUBA4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 0.19

Table S1963.  Gene #184: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TUBA4A MUTATED 1 6 0 1 1
TUBA4A WILD-TYPE 50 70 61 70 94

Figure S706.  Get High-res Image Gene #184: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TUBA4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S1964.  Gene #184: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TUBA4A MUTATED 3 2 1 1 1 0 0 1 0
TUBA4A WILD-TYPE 66 46 38 15 52 20 21 37 50
'TUBA4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S1965.  Gene #184: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TUBA4A MUTATED 1 0 0 0 2 0
TUBA4A WILD-TYPE 12 16 14 11 9 9
'TUBA4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S1966.  Gene #184: 'TUBA4A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TUBA4A MUTATED 0 0 0 0 0 0 2 1 0
TUBA4A WILD-TYPE 11 7 7 9 8 7 9 8 5
'ZFC3H1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S1967.  Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZFC3H1 MUTATED 3 0 2 2 0
ZFC3H1 WILD-TYPE 29 18 44 25 23
'ZFC3H1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S1968.  Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZFC3H1 MUTATED 4 2 1
ZFC3H1 WILD-TYPE 39 65 35
'ZFC3H1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00999 (Fisher's exact test), Q value = 0.094

Table S1969.  Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZFC3H1 MUTATED 2 3 13
ZFC3H1 WILD-TYPE 40 170 134

Figure S707.  Get High-res Image Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZFC3H1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 0.33

Table S1970.  Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZFC3H1 MUTATED 4 1 7
ZFC3H1 WILD-TYPE 58 72 68
'ZFC3H1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S1971.  Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZFC3H1 MUTATED 1 7 8
ZFC3H1 WILD-TYPE 69 113 92
'ZFC3H1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 0.96

Table S1972.  Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZFC3H1 MUTATED 2 0 1 3 3 4 2 1 0
ZFC3H1 WILD-TYPE 39 26 29 26 36 65 18 13 22
'ZFC3H1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.25

Table S1973.  Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZFC3H1 MUTATED 1 7 4 7
ZFC3H1 WILD-TYPE 99 65 68 114
'ZFC3H1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.095

Table S1974.  Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZFC3H1 MUTATED 1 2 9 3 4
ZFC3H1 WILD-TYPE 58 73 65 116 34

Figure S708.  Get High-res Image Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.1

Table S1975.  Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZFC3H1 MUTATED 1 10 1 1 6
ZFC3H1 WILD-TYPE 50 66 60 70 89

Figure S709.  Get High-res Image Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00748 (Fisher's exact test), Q value = 0.081

Table S1976.  Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZFC3H1 MUTATED 3 4 1 4 0 2 0 4 1
ZFC3H1 WILD-TYPE 66 44 38 12 53 18 21 34 49

Figure S710.  Get High-res Image Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 0.19

Table S1977.  Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZFC3H1 MUTATED 0 1 0 0 3 0
ZFC3H1 WILD-TYPE 13 15 14 11 8 9

Figure S711.  Get High-res Image Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1978.  Gene #185: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZFC3H1 MUTATED 1 0 0 1 0 0 2 0 0
ZFC3H1 WILD-TYPE 10 7 7 8 8 7 9 9 5
'FRMPD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S1979.  Gene #186: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FRMPD4 MUTATED 5 12 13
FRMPD4 WILD-TYPE 37 161 134
'FRMPD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1980.  Gene #186: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FRMPD4 MUTATED 9 9 8
FRMPD4 WILD-TYPE 53 64 67
'FRMPD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.8

Table S1981.  Gene #186: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FRMPD4 MUTATED 4 12 11
FRMPD4 WILD-TYPE 66 108 89
'FRMPD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.55

Table S1982.  Gene #186: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FRMPD4 MUTATED 3 3 0 5 3 9 0 1 3
FRMPD4 WILD-TYPE 38 23 30 24 36 60 20 13 19
'FRMPD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S1983.  Gene #186: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FRMPD4 MUTATED 11 9 6 3
FRMPD4 WILD-TYPE 89 63 66 118

Figure S712.  Get High-res Image Gene #186: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FRMPD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00052 (Fisher's exact test), Q value = 0.016

Table S1984.  Gene #186: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FRMPD4 MUTATED 10 8 8 1 2
FRMPD4 WILD-TYPE 49 67 66 118 36

Figure S713.  Get High-res Image Gene #186: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FRMPD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.1

Table S1985.  Gene #186: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FRMPD4 MUTATED 8 9 7 2 3
FRMPD4 WILD-TYPE 43 67 54 69 92

Figure S714.  Get High-res Image Gene #186: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FRMPD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S1986.  Gene #186: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FRMPD4 MUTATED 7 8 3 1 5 2 1 1 1
FRMPD4 WILD-TYPE 62 40 36 15 48 18 20 37 49
'FRMPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.66

Table S1987.  Gene #186: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FRMPD4 MUTATED 2 1 0 0 0 0
FRMPD4 WILD-TYPE 11 15 14 11 11 9
'FRMPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S1988.  Gene #186: 'FRMPD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FRMPD4 MUTATED 1 0 0 1 0 0 0 1 0
FRMPD4 WILD-TYPE 10 7 7 8 8 7 11 8 5
'PRRG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0788 (Fisher's exact test), Q value = 0.3

Table S1989.  Gene #187: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRRG1 MUTATED 1 2 8
PRRG1 WILD-TYPE 41 171 139
'PRRG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.22

Table S1990.  Gene #187: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRRG1 MUTATED 2 1 8
PRRG1 WILD-TYPE 60 72 67

Figure S715.  Get High-res Image Gene #187: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PRRG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0874 (Fisher's exact test), Q value = 0.32

Table S1991.  Gene #187: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRRG1 MUTATED 2 1 6
PRRG1 WILD-TYPE 68 119 94
'PRRG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S1992.  Gene #187: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRRG1 MUTATED 3 0 0 1 0 2 2 0 1
PRRG1 WILD-TYPE 38 26 30 28 39 67 18 14 21
'PRRG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S1993.  Gene #187: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRRG1 MUTATED 0 6 5 0
PRRG1 WILD-TYPE 100 66 67 121

Figure S716.  Get High-res Image Gene #187: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PRRG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00033 (Fisher's exact test), Q value = 0.012

Table S1994.  Gene #187: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRRG1 MUTATED 2 1 8 0 0
PRRG1 WILD-TYPE 57 74 66 119 38

Figure S717.  Get High-res Image Gene #187: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PRRG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.015

Table S1995.  Gene #187: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRRG1 MUTATED 1 8 2 0 0
PRRG1 WILD-TYPE 50 68 59 71 95

Figure S718.  Get High-res Image Gene #187: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PRRG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 6e-04 (Fisher's exact test), Q value = 0.018

Table S1996.  Gene #187: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRRG1 MUTATED 1 4 0 4 1 1 0 0 0
PRRG1 WILD-TYPE 68 44 39 12 52 19 21 38 50

Figure S719.  Get High-res Image Gene #187: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PRRG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S1997.  Gene #187: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PRRG1 MUTATED 0 1 0 1 1 0
PRRG1 WILD-TYPE 13 15 14 10 10 9
'PRRG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S1998.  Gene #187: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PRRG1 MUTATED 0 0 1 1 0 0 1 0 0
PRRG1 WILD-TYPE 11 7 6 8 8 7 10 9 5
'PAQR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S1999.  Gene #188: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PAQR5 MUTATED 0 4 4
PAQR5 WILD-TYPE 42 169 143
'PAQR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.91

Table S2000.  Gene #188: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PAQR5 MUTATED 1 3 4
PAQR5 WILD-TYPE 61 70 71
'PAQR5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.98

Table S2001.  Gene #188: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PAQR5 MUTATED 0 2 2
PAQR5 WILD-TYPE 70 118 98
'PAQR5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 0.97

Table S2002.  Gene #188: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PAQR5 MUTATED 0 0 1 0 0 2 0 0 1
PAQR5 WILD-TYPE 41 26 29 29 39 67 20 14 21
'PAQR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 0.26

Table S2003.  Gene #188: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PAQR5 MUTATED 2 3 3 0
PAQR5 WILD-TYPE 98 69 69 121
'PAQR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0425 (Fisher's exact test), Q value = 0.22

Table S2004.  Gene #188: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PAQR5 MUTATED 1 4 3 0 0
PAQR5 WILD-TYPE 58 71 71 119 38

Figure S720.  Get High-res Image Gene #188: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PAQR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.12

Table S2005.  Gene #188: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PAQR5 MUTATED 3 4 1 0 0
PAQR5 WILD-TYPE 48 72 60 71 95

Figure S721.  Get High-res Image Gene #188: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PAQR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0465 (Fisher's exact test), Q value = 0.23

Table S2006.  Gene #188: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PAQR5 MUTATED 2 1 0 2 1 2 0 0 0
PAQR5 WILD-TYPE 67 47 39 14 52 18 21 38 50

Figure S722.  Get High-res Image Gene #188: 'PAQR5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BIRC3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S2007.  Gene #189: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BIRC3 MUTATED 2 0 0 1 0
BIRC3 WILD-TYPE 30 18 46 26 23
'BIRC3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S2008.  Gene #189: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BIRC3 MUTATED 2 1 0
BIRC3 WILD-TYPE 41 66 36
'BIRC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S2009.  Gene #189: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BIRC3 MUTATED 0 4 7
BIRC3 WILD-TYPE 42 169 140
'BIRC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2010.  Gene #189: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BIRC3 MUTATED 3 3 3
BIRC3 WILD-TYPE 59 70 72
'BIRC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S2011.  Gene #189: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BIRC3 MUTATED 1 4 3
BIRC3 WILD-TYPE 69 116 97
'BIRC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S2012.  Gene #189: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BIRC3 MUTATED 1 0 2 1 1 3 0 0 0
BIRC3 WILD-TYPE 40 26 28 28 38 66 20 14 22
'BIRC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S2013.  Gene #189: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BIRC3 MUTATED 3 3 2 3
BIRC3 WILD-TYPE 97 69 70 118
'BIRC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S2014.  Gene #189: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BIRC3 MUTATED 1 3 4 1 2
BIRC3 WILD-TYPE 58 72 70 118 36
'BIRC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S2015.  Gene #189: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BIRC3 MUTATED 3 4 1 1 2
BIRC3 WILD-TYPE 48 72 60 70 93
'BIRC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0573 (Fisher's exact test), Q value = 0.26

Table S2016.  Gene #189: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BIRC3 MUTATED 2 2 1 1 0 3 0 2 0
BIRC3 WILD-TYPE 67 46 38 15 53 17 21 36 50
'BIRC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S2017.  Gene #189: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BIRC3 MUTATED 1 1 0 0 1 0
BIRC3 WILD-TYPE 12 15 14 11 10 9
'BIRC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.94

Table S2018.  Gene #189: 'BIRC3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BIRC3 MUTATED 1 0 0 0 0 0 1 0 1
BIRC3 WILD-TYPE 10 7 7 9 8 7 10 9 4
'PPP1R12B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.17

Table S2019.  Gene #190: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PPP1R12B MUTATED 0 2 0 1 0
PPP1R12B WILD-TYPE 32 16 46 26 23

Figure S723.  Get High-res Image Gene #190: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PPP1R12B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S2020.  Gene #190: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PPP1R12B MUTATED 2 0 1
PPP1R12B WILD-TYPE 41 67 35
'PPP1R12B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2021.  Gene #190: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PPP1R12B MUTATED 1 6 5
PPP1R12B WILD-TYPE 41 167 142
'PPP1R12B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 0.29

Table S2022.  Gene #190: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PPP1R12B MUTATED 6 1 2
PPP1R12B WILD-TYPE 56 72 73
'PPP1R12B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.56

Table S2023.  Gene #190: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PPP1R12B MUTATED 2 2 6
PPP1R12B WILD-TYPE 68 118 94
'PPP1R12B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S2024.  Gene #190: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PPP1R12B MUTATED 1 0 0 1 2 4 2 0 0
PPP1R12B WILD-TYPE 40 26 30 28 37 65 18 14 22
'PPP1R12B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S2025.  Gene #190: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PPP1R12B MUTATED 4 2 4 2
PPP1R12B WILD-TYPE 96 70 68 119
'PPP1R12B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S2026.  Gene #190: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PPP1R12B MUTATED 4 3 2 2 1
PPP1R12B WILD-TYPE 55 72 72 117 37
'PPP1R12B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S2027.  Gene #190: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PPP1R12B MUTATED 0 5 2 3 1
PPP1R12B WILD-TYPE 51 71 59 68 94
'PPP1R12B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.72

Table S2028.  Gene #190: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PPP1R12B MUTATED 2 4 0 1 2 0 1 0 1
PPP1R12B WILD-TYPE 67 44 39 15 51 20 20 38 49
'TFE3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S2029.  Gene #191: 'TFE3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TFE3 MUTATED 2 0 0 0 1
TFE3 WILD-TYPE 30 18 46 27 22
'TFE3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S2030.  Gene #191: 'TFE3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TFE3 MUTATED 2 0 1
TFE3 WILD-TYPE 41 67 35
'TFE3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00297 (Fisher's exact test), Q value = 0.047

Table S2031.  Gene #191: 'TFE3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TFE3 MUTATED 0 1 10
TFE3 WILD-TYPE 42 172 137

Figure S724.  Get High-res Image Gene #191: 'TFE3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TFE3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 0.28

Table S2032.  Gene #191: 'TFE3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TFE3 MUTATED 3 0 5
TFE3 WILD-TYPE 59 73 70
'TFE3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S2033.  Gene #191: 'TFE3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TFE3 MUTATED 1 3 6
TFE3 WILD-TYPE 69 117 94
'TFE3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S2034.  Gene #191: 'TFE3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TFE3 MUTATED 0 2 0 0 2 5 1 0 0
TFE3 WILD-TYPE 41 24 30 29 37 64 19 14 22
'TFE3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S2035.  Gene #191: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TFE3 MUTATED 0 6 2 3
TFE3 WILD-TYPE 100 66 70 118

Figure S725.  Get High-res Image Gene #191: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TFE3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.0093

Table S2036.  Gene #191: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TFE3 MUTATED 0 0 8 1 2
TFE3 WILD-TYPE 59 75 66 118 36

Figure S726.  Get High-res Image Gene #191: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 0.23

Table S2037.  Gene #191: 'TFE3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TFE3 MUTATED 0 6 2 0 3
TFE3 WILD-TYPE 51 70 59 71 92

Figure S727.  Get High-res Image Gene #191: 'TFE3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00925 (Fisher's exact test), Q value = 0.09

Table S2038.  Gene #191: 'TFE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TFE3 MUTATED 1 2 0 4 1 0 0 2 1
TFE3 WILD-TYPE 68 46 39 12 52 20 21 36 49

Figure S728.  Get High-res Image Gene #191: 'TFE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF473 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.74

Table S2039.  Gene #192: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF473 MUTATED 3 0 1 1 0
ZNF473 WILD-TYPE 29 18 45 26 23
'ZNF473 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0503 (Fisher's exact test), Q value = 0.24

Table S2040.  Gene #192: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF473 MUTATED 3 0 2
ZNF473 WILD-TYPE 40 67 34
'ZNF473 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S2041.  Gene #192: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF473 MUTATED 1 4 9
ZNF473 WILD-TYPE 41 169 138
'ZNF473 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2042.  Gene #192: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF473 MUTATED 3 3 3
ZNF473 WILD-TYPE 59 70 72
'ZNF473 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.65

Table S2043.  Gene #192: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF473 MUTATED 1 4 6
ZNF473 WILD-TYPE 69 116 94
'ZNF473 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S2044.  Gene #192: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF473 MUTATED 1 0 0 2 1 4 1 1 1
ZNF473 WILD-TYPE 40 26 30 27 38 65 19 13 21
'ZNF473 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S2045.  Gene #192: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF473 MUTATED 3 3 3 5
ZNF473 WILD-TYPE 97 69 69 116
'ZNF473 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S2046.  Gene #192: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF473 MUTATED 4 1 4 2 3
ZNF473 WILD-TYPE 55 74 70 117 35
'ZNF473 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.9

Table S2047.  Gene #192: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF473 MUTATED 3 4 1 3 2
ZNF473 WILD-TYPE 48 72 60 68 93
'ZNF473 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S2048.  Gene #192: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF473 MUTATED 4 2 1 1 2 0 1 1 1
ZNF473 WILD-TYPE 65 46 38 15 51 20 20 37 49
'ZNF473 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.91

Table S2049.  Gene #192: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF473 MUTATED 0 0 1 1 1 1
ZNF473 WILD-TYPE 13 16 13 10 10 8
'ZNF473 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S2050.  Gene #192: 'ZNF473 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF473 MUTATED 1 0 0 0 1 0 2 0 0
ZNF473 WILD-TYPE 10 7 7 9 7 7 9 9 5
'SLAMF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S2051.  Gene #193: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLAMF7 MUTATED 1 3 7
SLAMF7 WILD-TYPE 41 170 140
'SLAMF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S2052.  Gene #193: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLAMF7 MUTATED 5 1 3
SLAMF7 WILD-TYPE 57 72 72
'SLAMF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S2053.  Gene #193: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLAMF7 MUTATED 3 3 4
SLAMF7 WILD-TYPE 67 117 96
'SLAMF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.993 (Fisher's exact test), Q value = 1

Table S2054.  Gene #193: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLAMF7 MUTATED 1 1 1 1 1 4 0 0 1
SLAMF7 WILD-TYPE 40 25 29 28 38 65 20 14 21
'SLAMF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S2055.  Gene #193: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLAMF7 MUTATED 1 2 5 3
SLAMF7 WILD-TYPE 99 70 67 118
'SLAMF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S2056.  Gene #193: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLAMF7 MUTATED 4 2 2 2 1
SLAMF7 WILD-TYPE 55 73 72 117 37
'SLAMF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S2057.  Gene #193: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLAMF7 MUTATED 2 3 3 0 2
SLAMF7 WILD-TYPE 49 73 58 71 93
'SLAMF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.88

Table S2058.  Gene #193: 'SLAMF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLAMF7 MUTATED 2 3 0 1 2 1 0 0 1
SLAMF7 WILD-TYPE 67 45 39 15 51 19 21 38 49
'SNAI2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.52

Table S2059.  Gene #194: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SNAI2 MUTATED 0 3 7
SNAI2 WILD-TYPE 42 170 140
'SNAI2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2060.  Gene #194: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SNAI2 MUTATED 3 3 3
SNAI2 WILD-TYPE 59 70 72
'SNAI2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00999 (Fisher's exact test), Q value = 0.094

Table S2061.  Gene #194: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SNAI2 MUTATED 3 0 6
SNAI2 WILD-TYPE 67 120 94

Figure S729.  Get High-res Image Gene #194: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SNAI2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S2062.  Gene #194: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SNAI2 MUTATED 2 0 0 0 1 5 0 1 0
SNAI2 WILD-TYPE 39 26 30 29 38 64 20 13 22
'SNAI2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S2063.  Gene #194: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SNAI2 MUTATED 1 5 2 2
SNAI2 WILD-TYPE 99 67 70 119
'SNAI2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S2064.  Gene #194: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SNAI2 MUTATED 2 2 4 1 1
SNAI2 WILD-TYPE 57 73 70 118 37
'SNAI2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0491 (Fisher's exact test), Q value = 0.24

Table S2065.  Gene #194: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SNAI2 MUTATED 2 5 1 1 0
SNAI2 WILD-TYPE 49 71 60 70 95

Figure S730.  Get High-res Image Gene #194: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SNAI2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S2066.  Gene #194: 'SNAI2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SNAI2 MUTATED 3 2 0 2 2 0 0 0 0
SNAI2 WILD-TYPE 66 46 39 14 51 20 21 38 50
'B4GALNT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00076 (Fisher's exact test), Q value = 0.021

Table S2067.  Gene #195: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
B4GALNT4 MUTATED 1 0 10
B4GALNT4 WILD-TYPE 41 173 137

Figure S731.  Get High-res Image Gene #195: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'B4GALNT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.2

Table S2068.  Gene #195: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
B4GALNT4 MUTATED 5 0 5
B4GALNT4 WILD-TYPE 57 73 70

Figure S732.  Get High-res Image Gene #195: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'B4GALNT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S2069.  Gene #195: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
B4GALNT4 MUTATED 0 4 6
B4GALNT4 WILD-TYPE 70 116 94
'B4GALNT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S2070.  Gene #195: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
B4GALNT4 MUTATED 0 1 0 2 1 6 0 0 0
B4GALNT4 WILD-TYPE 41 25 30 27 38 63 20 14 22
'B4GALNT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S2071.  Gene #195: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
B4GALNT4 MUTATED 0 5 4 2
B4GALNT4 WILD-TYPE 100 67 68 119

Figure S733.  Get High-res Image Gene #195: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'B4GALNT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0053

Table S2072.  Gene #195: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
B4GALNT4 MUTATED 0 0 9 1 1
B4GALNT4 WILD-TYPE 59 75 65 118 37

Figure S734.  Get High-res Image Gene #195: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'B4GALNT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.098

Table S2073.  Gene #195: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
B4GALNT4 MUTATED 0 7 2 0 2
B4GALNT4 WILD-TYPE 51 69 59 71 93

Figure S735.  Get High-res Image Gene #195: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'B4GALNT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S2074.  Gene #195: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
B4GALNT4 MUTATED 0 3 0 5 1 0 0 1 1
B4GALNT4 WILD-TYPE 69 45 39 11 52 20 21 37 49

Figure S736.  Get High-res Image Gene #195: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'B4GALNT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S2075.  Gene #195: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
B4GALNT4 MUTATED 0 0 1 0 2 0
B4GALNT4 WILD-TYPE 13 16 13 11 9 9
'B4GALNT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S2076.  Gene #195: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
B4GALNT4 MUTATED 0 0 0 1 1 0 1 0 0
B4GALNT4 WILD-TYPE 11 7 7 8 7 7 10 9 5
'HIPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S2077.  Gene #196: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HIPK2 MUTATED 3 8 13
HIPK2 WILD-TYPE 39 165 134
'HIPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S2078.  Gene #196: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HIPK2 MUTATED 8 6 7
HIPK2 WILD-TYPE 54 67 68
'HIPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.1

Table S2079.  Gene #196: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HIPK2 MUTATED 1 7 13
HIPK2 WILD-TYPE 69 113 87

Figure S737.  Get High-res Image Gene #196: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'HIPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.85

Table S2080.  Gene #196: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HIPK2 MUTATED 2 1 1 1 3 10 2 0 1
HIPK2 WILD-TYPE 39 25 29 28 36 59 18 14 21
'HIPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00534 (Fisher's exact test), Q value = 0.069

Table S2081.  Gene #196: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HIPK2 MUTATED 4 11 6 3
HIPK2 WILD-TYPE 96 61 66 118

Figure S738.  Get High-res Image Gene #196: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HIPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.0093

Table S2082.  Gene #196: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HIPK2 MUTATED 4 4 13 1 2
HIPK2 WILD-TYPE 55 71 61 118 36

Figure S739.  Get High-res Image Gene #196: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HIPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00516 (Fisher's exact test), Q value = 0.067

Table S2083.  Gene #196: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HIPK2 MUTATED 2 13 4 2 3
HIPK2 WILD-TYPE 49 63 57 69 92

Figure S740.  Get High-res Image Gene #196: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HIPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.37

Table S2084.  Gene #196: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HIPK2 MUTATED 10 4 1 2 2 2 0 2 1
HIPK2 WILD-TYPE 59 44 38 14 51 18 21 36 49
'HIPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S2085.  Gene #196: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HIPK2 MUTATED 1 1 1 1 0 1
HIPK2 WILD-TYPE 12 15 13 10 11 8
'HIPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S2086.  Gene #196: 'HIPK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HIPK2 MUTATED 1 1 1 0 0 0 1 1 0
HIPK2 WILD-TYPE 10 6 6 9 8 7 10 8 5
'SHROOM4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.18

Table S2087.  Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SHROOM4 MUTATED 4 0 0 1 0
SHROOM4 WILD-TYPE 28 18 46 26 23

Figure S741.  Get High-res Image Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SHROOM4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0236 (Fisher's exact test), Q value = 0.16

Table S2088.  Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SHROOM4 MUTATED 4 0 1
SHROOM4 WILD-TYPE 39 67 35

Figure S742.  Get High-res Image Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SHROOM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00296 (Fisher's exact test), Q value = 0.047

Table S2089.  Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SHROOM4 MUTATED 2 3 15
SHROOM4 WILD-TYPE 40 170 132

Figure S743.  Get High-res Image Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SHROOM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 0.24

Table S2090.  Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SHROOM4 MUTATED 1 6 9
SHROOM4 WILD-TYPE 61 67 66

Figure S744.  Get High-res Image Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SHROOM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S2091.  Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SHROOM4 MUTATED 2 6 9
SHROOM4 WILD-TYPE 68 114 91
'SHROOM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S2092.  Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SHROOM4 MUTATED 1 3 0 2 2 5 3 0 1
SHROOM4 WILD-TYPE 40 23 30 27 37 64 17 14 21
'SHROOM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S2093.  Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SHROOM4 MUTATED 6 7 3 5
SHROOM4 WILD-TYPE 94 65 69 116
'SHROOM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00517 (Fisher's exact test), Q value = 0.067

Table S2094.  Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SHROOM4 MUTATED 3 4 9 1 4
SHROOM4 WILD-TYPE 56 71 65 118 34

Figure S745.  Get High-res Image Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SHROOM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0041 (Fisher's exact test), Q value = 0.058

Table S2095.  Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SHROOM4 MUTATED 1 11 1 5 2
SHROOM4 WILD-TYPE 50 65 60 66 93

Figure S746.  Get High-res Image Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SHROOM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S2096.  Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SHROOM4 MUTATED 4 2 2 7 3 0 0 2 0
SHROOM4 WILD-TYPE 65 46 37 9 50 20 21 36 50

Figure S747.  Get High-res Image Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SHROOM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S2097.  Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SHROOM4 MUTATED 1 0 0 2 2 0
SHROOM4 WILD-TYPE 12 16 14 9 9 9
'SHROOM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S2098.  Gene #197: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SHROOM4 MUTATED 0 0 1 1 1 0 1 1 0
SHROOM4 WILD-TYPE 11 7 6 8 7 7 10 8 5
'DDX43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.16

Table S2099.  Gene #198: 'DDX43 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DDX43 MUTATED 1 1 8
DDX43 WILD-TYPE 41 172 139

Figure S748.  Get High-res Image Gene #198: 'DDX43 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DDX43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0973 (Fisher's exact test), Q value = 0.34

Table S2100.  Gene #198: 'DDX43 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DDX43 MUTATED 6 1 3
DDX43 WILD-TYPE 56 72 72
'DDX43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.19

Table S2101.  Gene #198: 'DDX43 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DDX43 MUTATED 1 2 8
DDX43 WILD-TYPE 69 118 92

Figure S749.  Get High-res Image Gene #198: 'DDX43 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DDX43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.094 (Fisher's exact test), Q value = 0.33

Table S2102.  Gene #198: 'DDX43 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DDX43 MUTATED 1 1 0 0 0 6 1 2 0
DDX43 WILD-TYPE 40 25 30 29 39 63 19 12 22
'DDX43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S2103.  Gene #198: 'DDX43 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DDX43 MUTATED 1 5 3 2
DDX43 WILD-TYPE 99 67 69 119
'DDX43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S2104.  Gene #198: 'DDX43 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DDX43 MUTATED 2 2 5 1 1
DDX43 WILD-TYPE 57 73 69 118 37
'DDX43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.74

Table S2105.  Gene #198: 'DDX43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DDX43 MUTATED 0 4 3 1 3
DDX43 WILD-TYPE 51 72 58 70 92
'DDX43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S2106.  Gene #198: 'DDX43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DDX43 MUTATED 2 2 0 3 1 0 0 1 2
DDX43 WILD-TYPE 67 46 39 13 52 20 21 37 48
'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.56

Table S2107.  Gene #198: 'DDX43 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DDX43 MUTATED 0 1 1 1 3 0
DDX43 WILD-TYPE 13 15 13 10 8 9
'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S2108.  Gene #198: 'DDX43 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DDX43 MUTATED 0 0 0 2 1 2 1 0 0
DDX43 WILD-TYPE 11 7 7 7 7 5 10 9 5
'LHCGR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S2109.  Gene #199: 'LHCGR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LHCGR MUTATED 1 1 1 1 0
LHCGR WILD-TYPE 31 17 45 26 23
'LHCGR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2110.  Gene #199: 'LHCGR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LHCGR MUTATED 1 2 1
LHCGR WILD-TYPE 42 65 35
'LHCGR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S2111.  Gene #199: 'LHCGR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LHCGR MUTATED 3 8 12
LHCGR WILD-TYPE 39 165 135
'LHCGR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S2112.  Gene #199: 'LHCGR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LHCGR MUTATED 7 4 9
LHCGR WILD-TYPE 55 69 66
'LHCGR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S2113.  Gene #199: 'LHCGR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LHCGR MUTATED 4 9 8
LHCGR WILD-TYPE 66 111 92
'LHCGR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S2114.  Gene #199: 'LHCGR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LHCGR MUTATED 5 2 2 2 2 5 2 1 0
LHCGR WILD-TYPE 36 24 28 27 37 64 18 13 22
'LHCGR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.24

Table S2115.  Gene #199: 'LHCGR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LHCGR MUTATED 7 5 9 3
LHCGR WILD-TYPE 93 67 63 118
'LHCGR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.46

Table S2116.  Gene #199: 'LHCGR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LHCGR MUTATED 6 8 5 4 1
LHCGR WILD-TYPE 53 67 69 115 37
'LHCGR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.14

Table S2117.  Gene #199: 'LHCGR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LHCGR MUTATED 7 7 6 1 3
LHCGR WILD-TYPE 44 69 55 70 92

Figure S750.  Get High-res Image Gene #199: 'LHCGR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LHCGR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 0.93

Table S2118.  Gene #199: 'LHCGR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LHCGR MUTATED 4 5 3 2 5 0 2 1 2
LHCGR WILD-TYPE 65 43 36 14 48 20 19 37 48
'LHCGR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S2119.  Gene #199: 'LHCGR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LHCGR MUTATED 1 1 0 1 3 1
LHCGR WILD-TYPE 12 15 14 10 8 8
'LHCGR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S2120.  Gene #199: 'LHCGR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LHCGR MUTATED 1 1 1 1 1 0 1 0 1
LHCGR WILD-TYPE 10 6 6 8 7 7 10 9 4
'USP34 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.73

Table S2121.  Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
USP34 MUTATED 4 1 1 1 1
USP34 WILD-TYPE 28 17 45 26 22
'USP34 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0608 (Fisher's exact test), Q value = 0.26

Table S2122.  Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
USP34 MUTATED 5 1 2
USP34 WILD-TYPE 38 66 34
'USP34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00171 (Fisher's exact test), Q value = 0.034

Table S2123.  Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
USP34 MUTATED 4 10 27
USP34 WILD-TYPE 38 163 120

Figure S751.  Get High-res Image Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 0.23

Table S2124.  Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
USP34 MUTATED 11 6 17
USP34 WILD-TYPE 51 67 58

Figure S752.  Get High-res Image Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'USP34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.16

Table S2125.  Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
USP34 MUTATED 6 10 20
USP34 WILD-TYPE 64 110 80

Figure S753.  Get High-res Image Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'USP34 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0333 (Fisher's exact test), Q value = 0.19

Table S2126.  Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
USP34 MUTATED 5 1 1 7 4 15 2 1 0
USP34 WILD-TYPE 36 25 29 22 35 54 18 13 22

Figure S754.  Get High-res Image Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'USP34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0072

Table S2127.  Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
USP34 MUTATED 5 17 13 7
USP34 WILD-TYPE 95 55 59 114

Figure S755.  Get High-res Image Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'USP34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S2128.  Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
USP34 MUTATED 5 5 23 4 5
USP34 WILD-TYPE 54 70 51 115 33

Figure S756.  Get High-res Image Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S2129.  Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
USP34 MUTATED 3 23 5 5 5
USP34 WILD-TYPE 48 53 56 66 90

Figure S757.  Get High-res Image Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'USP34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S2130.  Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
USP34 MUTATED 9 10 1 11 2 1 0 4 3
USP34 WILD-TYPE 60 38 38 5 51 19 21 34 47

Figure S758.  Get High-res Image Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'USP34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00873 (Fisher's exact test), Q value = 0.088

Table S2131.  Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
USP34 MUTATED 1 2 1 2 7 1
USP34 WILD-TYPE 12 14 13 9 4 8

Figure S759.  Get High-res Image Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'USP34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S2132.  Gene #200: 'USP34 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
USP34 MUTATED 0 1 2 4 1 1 4 1 0
USP34 WILD-TYPE 11 6 5 5 7 6 7 8 5
'ERCC5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S2133.  Gene #201: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ERCC5 MUTATED 2 0 0 1 0
ERCC5 WILD-TYPE 30 18 46 26 23
'ERCC5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0381 (Fisher's exact test), Q value = 0.21

Table S2134.  Gene #201: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ERCC5 MUTATED 3 0 0
ERCC5 WILD-TYPE 40 67 36

Figure S760.  Get High-res Image Gene #201: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ERCC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.048 (Fisher's exact test), Q value = 0.23

Table S2135.  Gene #201: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ERCC5 MUTATED 1 5 13
ERCC5 WILD-TYPE 41 168 134

Figure S761.  Get High-res Image Gene #201: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ERCC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S2136.  Gene #201: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ERCC5 MUTATED 3 5 9
ERCC5 WILD-TYPE 59 68 66
'ERCC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S2137.  Gene #201: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ERCC5 MUTATED 3 9 6
ERCC5 WILD-TYPE 67 111 94
'ERCC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S2138.  Gene #201: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ERCC5 MUTATED 0 2 1 3 3 6 1 0 2
ERCC5 WILD-TYPE 41 24 29 26 36 63 19 14 20
'ERCC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.096

Table S2139.  Gene #201: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ERCC5 MUTATED 5 10 2 3
ERCC5 WILD-TYPE 95 62 70 118

Figure S762.  Get High-res Image Gene #201: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ERCC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00079 (Fisher's exact test), Q value = 0.021

Table S2140.  Gene #201: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ERCC5 MUTATED 2 7 8 0 3
ERCC5 WILD-TYPE 57 68 66 119 35

Figure S763.  Get High-res Image Gene #201: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ERCC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S2141.  Gene #201: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ERCC5 MUTATED 2 7 1 5 4
ERCC5 WILD-TYPE 49 69 60 66 91
'ERCC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S2142.  Gene #201: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ERCC5 MUTATED 5 3 2 2 2 1 0 3 1
ERCC5 WILD-TYPE 64 45 37 14 51 19 21 35 49
'ERCC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S2143.  Gene #201: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ERCC5 MUTATED 3 1 2 0 1 0
ERCC5 WILD-TYPE 10 15 12 11 10 9
'ERCC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S2144.  Gene #201: 'ERCC5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ERCC5 MUTATED 0 1 0 2 0 1 0 1 2
ERCC5 WILD-TYPE 11 6 7 7 8 6 11 8 3
'HIST1H1T MUTATION STATUS' versus 'CN_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S2145.  Gene #202: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HIST1H1T MUTATED 0 5 4
HIST1H1T WILD-TYPE 42 168 143
'HIST1H1T MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S2146.  Gene #202: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HIST1H1T MUTATED 2 3 4
HIST1H1T WILD-TYPE 60 70 71
'HIST1H1T MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.91

Table S2147.  Gene #202: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HIST1H1T MUTATED 2 2 4
HIST1H1T WILD-TYPE 68 118 96
'HIST1H1T MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S2148.  Gene #202: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HIST1H1T MUTATED 2 0 0 1 0 2 1 1 1
HIST1H1T WILD-TYPE 39 26 30 28 39 67 19 13 21
'HIST1H1T MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.18

Table S2149.  Gene #202: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HIST1H1T MUTATED 2 4 3 0
HIST1H1T WILD-TYPE 98 68 69 121

Figure S764.  Get High-res Image Gene #202: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HIST1H1T MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S2150.  Gene #202: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HIST1H1T MUTATED 1 3 5 0 0
HIST1H1T WILD-TYPE 58 72 69 119 38

Figure S765.  Get High-res Image Gene #202: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HIST1H1T MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S2151.  Gene #202: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HIST1H1T MUTATED 1 3 3 2 0
HIST1H1T WILD-TYPE 50 73 58 69 95
'HIST1H1T MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S2152.  Gene #202: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HIST1H1T MUTATED 3 2 1 2 1 0 0 0 0
HIST1H1T WILD-TYPE 66 46 38 14 52 20 21 38 50
'HIST1H1T MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S2153.  Gene #202: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HIST1H1T MUTATED 1 0 1 1 0 0
HIST1H1T WILD-TYPE 12 16 13 10 11 9
'HIST1H1T MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S2154.  Gene #202: 'HIST1H1T MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HIST1H1T MUTATED 0 0 1 0 1 0 0 1 0
HIST1H1T WILD-TYPE 11 7 6 9 7 7 11 8 5
'RBPJ MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S2155.  Gene #203: 'RBPJ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RBPJ MUTATED 2 0 1 0 0
RBPJ WILD-TYPE 30 18 45 27 23
'RBPJ MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S2156.  Gene #203: 'RBPJ MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RBPJ MUTATED 2 1 0
RBPJ WILD-TYPE 41 66 36
'RBPJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S2157.  Gene #203: 'RBPJ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RBPJ MUTATED 2 4 8
RBPJ WILD-TYPE 40 169 139
'RBPJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S2158.  Gene #203: 'RBPJ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RBPJ MUTATED 3 4 6
RBPJ WILD-TYPE 59 69 69
'RBPJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S2159.  Gene #203: 'RBPJ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RBPJ MUTATED 3 6 6
RBPJ WILD-TYPE 67 114 94
'RBPJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 0.75

Table S2160.  Gene #203: 'RBPJ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RBPJ MUTATED 4 1 1 0 1 3 2 2 1
RBPJ WILD-TYPE 37 25 29 29 38 66 18 12 21
'RBPJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S2161.  Gene #203: 'RBPJ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RBPJ MUTATED 3 3 6 3
RBPJ WILD-TYPE 97 69 66 118
'RBPJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S2162.  Gene #203: 'RBPJ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RBPJ MUTATED 4 3 5 1 2
RBPJ WILD-TYPE 55 72 69 118 36
'RBPJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S2163.  Gene #203: 'RBPJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RBPJ MUTATED 2 5 5 1 2
RBPJ WILD-TYPE 49 71 56 70 93
'RBPJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.92

Table S2164.  Gene #203: 'RBPJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RBPJ MUTATED 5 4 1 1 1 0 0 2 1
RBPJ WILD-TYPE 64 44 38 15 52 20 21 36 49
'RBPJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S2165.  Gene #203: 'RBPJ MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RBPJ MUTATED 0 1 2 1 1 2
RBPJ WILD-TYPE 13 15 12 10 10 7
'RBPJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S2166.  Gene #203: 'RBPJ MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RBPJ MUTATED 2 0 1 1 1 1 1 0 0
RBPJ WILD-TYPE 9 7 6 8 7 6 10 9 5
'ADAM28 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S2167.  Gene #204: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ADAM28 MUTATED 2 0 0 1 0
ADAM28 WILD-TYPE 30 18 46 26 23
'ADAM28 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S2168.  Gene #204: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ADAM28 MUTATED 2 0 1
ADAM28 WILD-TYPE 41 67 35
'ADAM28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S2169.  Gene #204: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ADAM28 MUTATED 1 5 11
ADAM28 WILD-TYPE 41 168 136
'ADAM28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.92

Table S2170.  Gene #204: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ADAM28 MUTATED 6 4 4
ADAM28 WILD-TYPE 56 69 71
'ADAM28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.98

Table S2171.  Gene #204: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ADAM28 MUTATED 2 6 6
ADAM28 WILD-TYPE 68 114 94
'ADAM28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S2172.  Gene #204: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ADAM28 MUTATED 0 1 0 1 2 7 1 0 2
ADAM28 WILD-TYPE 41 25 30 28 37 62 19 14 20
'ADAM28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.97

Table S2173.  Gene #204: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ADAM28 MUTATED 5 5 3 4
ADAM28 WILD-TYPE 95 67 69 117
'ADAM28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S2174.  Gene #204: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ADAM28 MUTATED 2 4 7 2 2
ADAM28 WILD-TYPE 57 71 67 117 36
'ADAM28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S2175.  Gene #204: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ADAM28 MUTATED 2 4 4 3 3
ADAM28 WILD-TYPE 49 72 57 68 92
'ADAM28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 0.99

Table S2176.  Gene #204: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ADAM28 MUTATED 4 3 1 2 3 0 0 2 1
ADAM28 WILD-TYPE 65 45 38 14 50 20 21 36 49
'ADAM28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2177.  Gene #204: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ADAM28 MUTATED 1 1 1 0 0 0
ADAM28 WILD-TYPE 12 15 13 11 11 9
'ADAM28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S2178.  Gene #204: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ADAM28 MUTATED 2 0 0 1 0 0 0 0 0
ADAM28 WILD-TYPE 9 7 7 8 8 7 11 9 5
'KDM5B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00843 (Fisher's exact test), Q value = 0.086

Table S2179.  Gene #205: 'KDM5B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KDM5B MUTATED 5 0 0 2 0
KDM5B WILD-TYPE 27 18 46 25 23

Figure S766.  Get High-res Image Gene #205: 'KDM5B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KDM5B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0447 (Fisher's exact test), Q value = 0.22

Table S2180.  Gene #205: 'KDM5B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KDM5B MUTATED 5 1 1
KDM5B WILD-TYPE 38 66 35

Figure S767.  Get High-res Image Gene #205: 'KDM5B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KDM5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00087 (Fisher's exact test), Q value = 0.023

Table S2181.  Gene #205: 'KDM5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KDM5B MUTATED 5 3 15
KDM5B WILD-TYPE 37 170 132

Figure S768.  Get High-res Image Gene #205: 'KDM5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KDM5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S2182.  Gene #205: 'KDM5B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KDM5B MUTATED 4 3 10
KDM5B WILD-TYPE 58 70 65
'KDM5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S2183.  Gene #205: 'KDM5B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KDM5B MUTATED 2 10 7
KDM5B WILD-TYPE 68 110 93
'KDM5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S2184.  Gene #205: 'KDM5B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KDM5B MUTATED 3 1 1 2 4 2 4 1 1
KDM5B WILD-TYPE 38 25 29 27 35 67 16 13 21
'KDM5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S2185.  Gene #205: 'KDM5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KDM5B MUTATED 5 5 5 8
KDM5B WILD-TYPE 95 67 67 113
'KDM5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0604 (Fisher's exact test), Q value = 0.26

Table S2186.  Gene #205: 'KDM5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KDM5B MUTATED 2 6 7 3 5
KDM5B WILD-TYPE 57 69 67 116 33
'KDM5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S2187.  Gene #205: 'KDM5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KDM5B MUTATED 2 7 2 6 6
KDM5B WILD-TYPE 49 69 59 65 89
'KDM5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S2188.  Gene #205: 'KDM5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KDM5B MUTATED 4 2 1 3 4 2 2 4 1
KDM5B WILD-TYPE 65 46 38 13 49 18 19 34 49
'KDM5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S2189.  Gene #205: 'KDM5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KDM5B MUTATED 2 0 2 0 2 0
KDM5B WILD-TYPE 11 16 12 11 9 9
'KDM5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S2190.  Gene #205: 'KDM5B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KDM5B MUTATED 1 0 0 1 1 0 1 1 1
KDM5B WILD-TYPE 10 7 7 8 7 7 10 8 4
'RAG1AP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S2191.  Gene #206: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RAG1AP1 MUTATED 0 2 3
RAG1AP1 WILD-TYPE 42 171 144
'RAG1AP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2192.  Gene #206: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RAG1AP1 MUTATED 1 2 2
RAG1AP1 WILD-TYPE 61 71 73
'RAG1AP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00513 (Fisher's exact test), Q value = 0.067

Table S2193.  Gene #206: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RAG1AP1 MUTATED 0 0 5
RAG1AP1 WILD-TYPE 70 120 95

Figure S769.  Get High-res Image Gene #206: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RAG1AP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S2194.  Gene #206: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RAG1AP1 MUTATED 1 0 0 0 0 2 2 0 0
RAG1AP1 WILD-TYPE 40 26 30 29 39 67 18 14 22
'RAG1AP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S2195.  Gene #206: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RAG1AP1 MUTATED 1 2 2 1
RAG1AP1 WILD-TYPE 99 70 70 120
'RAG1AP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S2196.  Gene #206: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RAG1AP1 MUTATED 1 1 3 0 1
RAG1AP1 WILD-TYPE 58 74 71 119 37
'RAG1AP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S2197.  Gene #206: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RAG1AP1 MUTATED 1 3 1 0 1
RAG1AP1 WILD-TYPE 50 73 60 71 94
'RAG1AP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S2198.  Gene #206: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RAG1AP1 MUTATED 0 2 0 2 0 1 0 1 0
RAG1AP1 WILD-TYPE 69 46 39 14 53 19 21 37 50

Figure S770.  Get High-res Image Gene #206: 'RAG1AP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CNIH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S2199.  Gene #207: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CNIH4 MUTATED 0 4 2
CNIH4 WILD-TYPE 42 169 145
'CNIH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S2200.  Gene #207: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CNIH4 MUTATED 3 1 2
CNIH4 WILD-TYPE 59 72 73
'CNIH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S2201.  Gene #207: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CNIH4 MUTATED 0 1 4
CNIH4 WILD-TYPE 70 119 96
'CNIH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S2202.  Gene #207: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CNIH4 MUTATED 0 0 0 1 1 3 0 0 0
CNIH4 WILD-TYPE 41 26 30 28 38 66 20 14 22
'CNIH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.095

Table S2203.  Gene #207: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CNIH4 MUTATED 2 0 4 0
CNIH4 WILD-TYPE 98 72 68 121

Figure S771.  Get High-res Image Gene #207: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CNIH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0673 (Fisher's exact test), Q value = 0.28

Table S2204.  Gene #207: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CNIH4 MUTATED 3 1 2 0 0
CNIH4 WILD-TYPE 56 74 72 119 38
'CNIH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S2205.  Gene #207: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CNIH4 MUTATED 1 2 2 1 0
CNIH4 WILD-TYPE 50 74 59 70 95
'CNIH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S2206.  Gene #207: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CNIH4 MUTATED 0 2 0 0 3 1 0 0 0
CNIH4 WILD-TYPE 69 46 39 16 50 19 21 38 50
'CNIH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2207.  Gene #207: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CNIH4 MUTATED 1 1 1 1 0 0
CNIH4 WILD-TYPE 12 15 13 10 11 9
'CNIH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S2208.  Gene #207: 'CNIH4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CNIH4 MUTATED 0 1 0 0 1 1 0 0 1
CNIH4 WILD-TYPE 11 6 7 9 7 6 11 9 4
'TRIM13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S2209.  Gene #208: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TRIM13 MUTATED 2 0 1 0 0
TRIM13 WILD-TYPE 30 18 45 27 23
'TRIM13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S2210.  Gene #208: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TRIM13 MUTATED 2 1 0
TRIM13 WILD-TYPE 41 66 36
'TRIM13 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2211.  Gene #208: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRIM13 MUTATED 0 4 3
TRIM13 WILD-TYPE 42 169 144
'TRIM13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S2212.  Gene #208: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRIM13 MUTATED 0 2 2
TRIM13 WILD-TYPE 62 71 73
'TRIM13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S2213.  Gene #208: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRIM13 MUTATED 0 3 1
TRIM13 WILD-TYPE 70 117 99
'TRIM13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S2214.  Gene #208: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRIM13 MUTATED 0 0 2 0 0 1 1 0 0
TRIM13 WILD-TYPE 41 26 28 29 39 68 19 14 22
'TRIM13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.98

Table S2215.  Gene #208: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRIM13 MUTATED 2 2 0 3
TRIM13 WILD-TYPE 98 70 72 118
'TRIM13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.026 (Fisher's exact test), Q value = 0.17

Table S2216.  Gene #208: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRIM13 MUTATED 0 4 0 1 2
TRIM13 WILD-TYPE 59 71 74 118 36

Figure S772.  Get High-res Image Gene #208: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRIM13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00565 (Fisher's exact test), Q value = 0.071

Table S2217.  Gene #208: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRIM13 MUTATED 4 0 0 0 3
TRIM13 WILD-TYPE 47 76 61 71 92

Figure S773.  Get High-res Image Gene #208: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TRIM13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00123 (Fisher's exact test), Q value = 0.029

Table S2218.  Gene #208: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRIM13 MUTATED 0 0 0 0 1 3 0 3 0
TRIM13 WILD-TYPE 69 48 39 16 52 17 21 35 50

Figure S774.  Get High-res Image Gene #208: 'TRIM13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SNTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S2219.  Gene #209: 'SNTN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SNTN MUTATED 1 3 2
SNTN WILD-TYPE 41 170 145
'SNTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.56

Table S2220.  Gene #209: 'SNTN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SNTN MUTATED 0 2 4
SNTN WILD-TYPE 62 71 71
'SNTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.095

Table S2221.  Gene #209: 'SNTN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SNTN MUTATED 0 6 0
SNTN WILD-TYPE 70 114 100

Figure S775.  Get High-res Image Gene #209: 'SNTN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SNTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00619 (Fisher's exact test), Q value = 0.074

Table S2222.  Gene #209: 'SNTN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SNTN MUTATED 0 1 0 2 0 0 0 2 1
SNTN WILD-TYPE 41 25 30 27 39 69 20 12 21

Figure S776.  Get High-res Image Gene #209: 'SNTN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'SNTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S2223.  Gene #209: 'SNTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SNTN MUTATED 3 2 1 0
SNTN WILD-TYPE 97 70 71 121
'SNTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S2224.  Gene #209: 'SNTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SNTN MUTATED 1 2 3 0 0
SNTN WILD-TYPE 58 73 71 119 38
'SNTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S2225.  Gene #209: 'SNTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SNTN MUTATED 2 1 1 2 0
SNTN WILD-TYPE 49 75 60 69 95
'SNTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S2226.  Gene #209: 'SNTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SNTN MUTATED 2 0 1 1 2 0 0 0 0
SNTN WILD-TYPE 67 48 38 15 51 20 21 38 50
'SLC28A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.2

Table S2227.  Gene #210: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC28A2 MUTATED 0 3 10
SLC28A2 WILD-TYPE 42 170 137

Figure S777.  Get High-res Image Gene #210: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC28A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S2228.  Gene #210: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC28A2 MUTATED 4 2 5
SLC28A2 WILD-TYPE 58 71 70
'SLC28A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S2229.  Gene #210: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC28A2 MUTATED 2 4 6
SLC28A2 WILD-TYPE 68 116 94
'SLC28A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.985 (Fisher's exact test), Q value = 1

Table S2230.  Gene #210: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC28A2 MUTATED 1 1 1 1 1 5 1 0 1
SLC28A2 WILD-TYPE 40 25 29 28 38 64 19 14 21
'SLC28A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.18

Table S2231.  Gene #210: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC28A2 MUTATED 2 5 5 1
SLC28A2 WILD-TYPE 98 67 67 120

Figure S778.  Get High-res Image Gene #210: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC28A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.56

Table S2232.  Gene #210: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC28A2 MUTATED 2 4 5 2 0
SLC28A2 WILD-TYPE 57 71 69 117 38
'SLC28A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.28

Table S2233.  Gene #210: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC28A2 MUTATED 2 7 2 1 1
SLC28A2 WILD-TYPE 49 69 59 70 94
'SLC28A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0782 (Fisher's exact test), Q value = 0.3

Table S2234.  Gene #210: 'SLC28A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC28A2 MUTATED 2 4 0 2 1 2 1 0 1
SLC28A2 WILD-TYPE 67 44 39 14 52 18 20 38 49
'OR2M3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S2235.  Gene #211: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR2M3 MUTATED 2 4 9
OR2M3 WILD-TYPE 40 169 138
'OR2M3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0452 (Fisher's exact test), Q value = 0.23

Table S2236.  Gene #211: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR2M3 MUTATED 8 3 2
OR2M3 WILD-TYPE 54 70 73

Figure S779.  Get High-res Image Gene #211: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'OR2M3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00332 (Fisher's exact test), Q value = 0.051

Table S2237.  Gene #211: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR2M3 MUTATED 2 1 10
OR2M3 WILD-TYPE 68 119 90

Figure S780.  Get High-res Image Gene #211: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'OR2M3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S2238.  Gene #211: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR2M3 MUTATED 1 0 1 1 0 8 1 0 1
OR2M3 WILD-TYPE 40 26 29 28 39 61 19 14 21
'OR2M3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 0.28

Table S2239.  Gene #211: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR2M3 MUTATED 3 3 7 2
OR2M3 WILD-TYPE 97 69 65 119
'OR2M3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00553 (Fisher's exact test), Q value = 0.07

Table S2240.  Gene #211: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR2M3 MUTATED 6 3 4 0 2
OR2M3 WILD-TYPE 53 72 70 119 36

Figure S781.  Get High-res Image Gene #211: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR2M3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S2241.  Gene #211: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR2M3 MUTATED 1 4 5 1 4
OR2M3 WILD-TYPE 50 72 56 70 91
'OR2M3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S2242.  Gene #211: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR2M3 MUTATED 4 5 0 1 0 1 1 2 1
OR2M3 WILD-TYPE 65 43 39 15 53 19 20 36 49
'OR2M3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S2243.  Gene #211: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR2M3 MUTATED 0 1 1 0 1 1
OR2M3 WILD-TYPE 13 15 13 11 10 8
'OR2M3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.86

Table S2244.  Gene #211: 'OR2M3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR2M3 MUTATED 0 1 0 0 0 0 2 1 0
OR2M3 WILD-TYPE 11 6 7 9 8 7 9 8 5
'MLL3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 0.29

Table S2245.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MLL3 MUTATED 6 1 1 1 1
MLL3 WILD-TYPE 26 17 45 26 22
'MLL3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00615 (Fisher's exact test), Q value = 0.074

Table S2246.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MLL3 MUTATED 7 1 2
MLL3 WILD-TYPE 36 66 34

Figure S782.  Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0039 (Fisher's exact test), Q value = 0.056

Table S2247.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MLL3 MUTATED 1 25 32
MLL3 WILD-TYPE 41 148 115

Figure S783.  Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S2248.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MLL3 MUTATED 16 15 17
MLL3 WILD-TYPE 46 58 58
'MLL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0483 (Fisher's exact test), Q value = 0.24

Table S2249.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MLL3 MUTATED 5 24 18
MLL3 WILD-TYPE 65 96 82

Figure S784.  Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MLL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S2250.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MLL3 MUTATED 7 4 3 8 4 13 3 2 3
MLL3 WILD-TYPE 34 22 27 21 35 56 17 12 19
'MLL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S2251.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MLL3 MUTATED 15 18 14 11
MLL3 WILD-TYPE 85 54 58 110

Figure S785.  Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MLL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S2252.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MLL3 MUTATED 12 13 21 5 7
MLL3 WILD-TYPE 47 62 53 114 31

Figure S786.  Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00847 (Fisher's exact test), Q value = 0.086

Table S2253.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MLL3 MUTATED 14 17 11 6 9
MLL3 WILD-TYPE 37 59 50 65 86

Figure S787.  Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00269 (Fisher's exact test), Q value = 0.044

Table S2254.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MLL3 MUTATED 15 13 1 7 7 3 2 5 4
MLL3 WILD-TYPE 54 35 38 9 46 17 19 33 46

Figure S788.  Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S2255.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MLL3 MUTATED 2 2 6 0 2 1
MLL3 WILD-TYPE 11 14 8 11 9 8
'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S2256.  Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MLL3 MUTATED 0 2 1 1 4 2 1 1 1
MLL3 WILD-TYPE 11 5 6 8 4 5 10 8 4
'FIGNL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0982 (Fisher's exact test), Q value = 0.34

Table S2257.  Gene #213: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FIGNL1 MUTATED 3 0 0 1 0
FIGNL1 WILD-TYPE 29 18 46 26 23
'FIGNL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S2258.  Gene #213: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FIGNL1 MUTATED 2 1 1
FIGNL1 WILD-TYPE 41 66 35
'FIGNL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.12

Table S2259.  Gene #213: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FIGNL1 MUTATED 1 3 12
FIGNL1 WILD-TYPE 41 170 135

Figure S789.  Get High-res Image Gene #213: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FIGNL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S2260.  Gene #213: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FIGNL1 MUTATED 5 2 5
FIGNL1 WILD-TYPE 57 71 70
'FIGNL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S2261.  Gene #213: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FIGNL1 MUTATED 1 5 7
FIGNL1 WILD-TYPE 69 115 93
'FIGNL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S2262.  Gene #213: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FIGNL1 MUTATED 3 1 1 1 0 3 3 1 0
FIGNL1 WILD-TYPE 38 25 29 28 39 66 17 13 22
'FIGNL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0965 (Fisher's exact test), Q value = 0.34

Table S2263.  Gene #213: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FIGNL1 MUTATED 1 6 4 5
FIGNL1 WILD-TYPE 99 66 68 116
'FIGNL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.95

Table S2264.  Gene #213: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FIGNL1 MUTATED 4 3 4 3 2
FIGNL1 WILD-TYPE 55 72 70 116 36
'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S2265.  Gene #213: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FIGNL1 MUTATED 2 4 4 1 5
FIGNL1 WILD-TYPE 49 72 57 70 90
'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.014

Table S2266.  Gene #213: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FIGNL1 MUTATED 0 5 0 3 1 4 0 1 2
FIGNL1 WILD-TYPE 69 43 39 13 52 16 21 37 48

Figure S790.  Get High-res Image Gene #213: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COLEC10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.91

Table S2267.  Gene #214: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
COLEC10 MUTATED 1 5 2
COLEC10 WILD-TYPE 41 168 145
'COLEC10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.65

Table S2268.  Gene #214: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
COLEC10 MUTATED 1 4 1
COLEC10 WILD-TYPE 61 69 74
'COLEC10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2269.  Gene #214: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
COLEC10 MUTATED 1 3 2
COLEC10 WILD-TYPE 69 117 98
'COLEC10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S2270.  Gene #214: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
COLEC10 MUTATED 0 0 0 1 2 2 0 0 1
COLEC10 WILD-TYPE 41 26 30 28 37 67 20 14 21
'COLEC10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.9

Table S2271.  Gene #214: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
COLEC10 MUTATED 3 0 2 3
COLEC10 WILD-TYPE 97 72 70 118
'COLEC10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.47

Table S2272.  Gene #214: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
COLEC10 MUTATED 3 1 1 1 2
COLEC10 WILD-TYPE 56 74 73 118 36
'COLEC10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0699 (Fisher's exact test), Q value = 0.29

Table S2273.  Gene #214: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
COLEC10 MUTATED 4 0 1 1 2
COLEC10 WILD-TYPE 47 76 60 70 93
'COLEC10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S2274.  Gene #214: 'COLEC10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
COLEC10 MUTATED 0 0 1 0 4 0 0 2 1
COLEC10 WILD-TYPE 69 48 38 16 49 20 21 36 49
'MYEOV MUTATION STATUS' versus 'CN_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S2275.  Gene #215: 'MYEOV MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MYEOV MUTATED 0 1 5
MYEOV WILD-TYPE 42 172 142
'MYEOV MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S2276.  Gene #215: 'MYEOV MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MYEOV MUTATED 1 1 3
MYEOV WILD-TYPE 61 72 72
'MYEOV MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.78

Table S2277.  Gene #215: 'MYEOV MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MYEOV MUTATED 0 3 3
MYEOV WILD-TYPE 70 117 97
'MYEOV MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.9

Table S2278.  Gene #215: 'MYEOV MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MYEOV MUTATED 0 1 1 0 0 2 1 0 1
MYEOV WILD-TYPE 41 25 29 29 39 67 19 14 21
'MYEOV MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.093 (Fisher's exact test), Q value = 0.33

Table S2279.  Gene #215: 'MYEOV MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MYEOV MUTATED 0 3 2 1
MYEOV WILD-TYPE 100 69 70 120
'MYEOV MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S2280.  Gene #215: 'MYEOV MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MYEOV MUTATED 1 0 4 0 1
MYEOV WILD-TYPE 58 75 70 119 37

Figure S791.  Get High-res Image Gene #215: 'MYEOV MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYEOV MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S2281.  Gene #215: 'MYEOV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MYEOV MUTATED 1 4 0 0 0
MYEOV WILD-TYPE 50 72 61 71 95

Figure S792.  Get High-res Image Gene #215: 'MYEOV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MYEOV MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0029 (Fisher's exact test), Q value = 0.047

Table S2282.  Gene #215: 'MYEOV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MYEOV MUTATED 1 1 0 3 0 0 0 0 0
MYEOV WILD-TYPE 68 47 39 13 53 20 21 38 50

Figure S793.  Get High-res Image Gene #215: 'MYEOV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EFHC2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S2283.  Gene #216: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EFHC2 MUTATED 2 0 0 1 0
EFHC2 WILD-TYPE 30 18 46 26 23
'EFHC2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 0.21

Table S2284.  Gene #216: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EFHC2 MUTATED 3 0 0
EFHC2 WILD-TYPE 40 67 36

Figure S794.  Get High-res Image Gene #216: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EFHC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S2285.  Gene #216: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EFHC2 MUTATED 1 4 10
EFHC2 WILD-TYPE 41 169 137
'EFHC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S2286.  Gene #216: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EFHC2 MUTATED 4 3 5
EFHC2 WILD-TYPE 58 70 70
'EFHC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S2287.  Gene #216: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EFHC2 MUTATED 2 3 7
EFHC2 WILD-TYPE 68 117 93
'EFHC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S2288.  Gene #216: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EFHC2 MUTATED 3 0 1 0 1 4 1 1 1
EFHC2 WILD-TYPE 38 26 29 29 38 65 19 13 21
'EFHC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S2289.  Gene #216: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EFHC2 MUTATED 3 5 4 3
EFHC2 WILD-TYPE 97 67 68 118
'EFHC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S2290.  Gene #216: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EFHC2 MUTATED 3 4 5 0 3
EFHC2 WILD-TYPE 56 71 69 119 35

Figure S795.  Get High-res Image Gene #216: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EFHC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 0.32

Table S2291.  Gene #216: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EFHC2 MUTATED 4 5 1 0 4
EFHC2 WILD-TYPE 47 71 60 71 91
'EFHC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 0.9

Table S2292.  Gene #216: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EFHC2 MUTATED 4 3 1 1 0 1 1 2 1
EFHC2 WILD-TYPE 65 45 38 15 53 19 20 36 49
'EFHC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S2293.  Gene #216: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EFHC2 MUTATED 0 1 0 0 1 1
EFHC2 WILD-TYPE 13 15 14 11 10 8
'EFHC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.94

Table S2294.  Gene #216: 'EFHC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EFHC2 MUTATED 1 0 0 0 0 0 2 0 0
EFHC2 WILD-TYPE 10 7 7 9 8 7 9 9 5
'MYL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S2295.  Gene #217: 'MYL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MYL1 MUTATED 1 6 1
MYL1 WILD-TYPE 41 167 146
'MYL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S2296.  Gene #217: 'MYL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MYL1 MUTATED 1 5 1
MYL1 WILD-TYPE 61 68 74
'MYL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S2297.  Gene #217: 'MYL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MYL1 MUTATED 0 3 3
MYL1 WILD-TYPE 70 117 97
'MYL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.074 (Fisher's exact test), Q value = 0.29

Table S2298.  Gene #217: 'MYL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MYL1 MUTATED 0 0 0 0 0 3 0 2 1
MYL1 WILD-TYPE 41 26 30 29 39 66 20 12 21
'MYL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S2299.  Gene #217: 'MYL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MYL1 MUTATED 5 1 1 1
MYL1 WILD-TYPE 95 71 71 120
'MYL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S2300.  Gene #217: 'MYL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MYL1 MUTATED 4 2 1 1 0
MYL1 WILD-TYPE 55 73 73 118 38
'MYL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 0.17

Table S2301.  Gene #217: 'MYL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MYL1 MUTATED 4 1 2 1 0
MYL1 WILD-TYPE 47 75 59 70 95

Figure S796.  Get High-res Image Gene #217: 'MYL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MYL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S2302.  Gene #217: 'MYL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MYL1 MUTATED 1 2 2 0 1 1 0 0 1
MYL1 WILD-TYPE 68 46 37 16 52 19 21 38 49
'C12ORF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S2303.  Gene #218: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C12ORF5 MUTATED 0 4 2
C12ORF5 WILD-TYPE 42 169 145
'C12ORF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2304.  Gene #218: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C12ORF5 MUTATED 2 2 2
C12ORF5 WILD-TYPE 60 71 73
'C12ORF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S2305.  Gene #218: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C12ORF5 MUTATED 1 1 4
C12ORF5 WILD-TYPE 69 119 96
'C12ORF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S2306.  Gene #218: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C12ORF5 MUTATED 0 0 0 0 0 3 1 0 2
C12ORF5 WILD-TYPE 41 26 30 29 39 66 19 14 20
'C12ORF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S2307.  Gene #218: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C12ORF5 MUTATED 3 2 1 0
C12ORF5 WILD-TYPE 97 70 71 121
'C12ORF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0044 (Fisher's exact test), Q value = 0.061

Table S2308.  Gene #218: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C12ORF5 MUTATED 1 5 0 0 0
C12ORF5 WILD-TYPE 58 70 74 119 38

Figure S797.  Get High-res Image Gene #218: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C12ORF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.5

Table S2309.  Gene #218: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C12ORF5 MUTATED 3 1 0 1 1
C12ORF5 WILD-TYPE 48 75 61 70 94
'C12ORF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S2310.  Gene #218: 'C12ORF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C12ORF5 MUTATED 1 0 1 0 2 1 0 0 1
C12ORF5 WILD-TYPE 68 48 38 16 51 19 21 38 49
'ZNF280B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0987 (Fisher's exact test), Q value = 0.34

Table S2311.  Gene #219: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF280B MUTATED 3 0 0 1 0
ZNF280B WILD-TYPE 29 18 46 26 23
'ZNF280B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S2312.  Gene #219: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF280B MUTATED 2 1 1
ZNF280B WILD-TYPE 41 66 35
'ZNF280B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00838 (Fisher's exact test), Q value = 0.086

Table S2313.  Gene #219: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF280B MUTATED 2 1 9
ZNF280B WILD-TYPE 40 172 138

Figure S798.  Get High-res Image Gene #219: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF280B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.77

Table S2314.  Gene #219: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF280B MUTATED 3 1 4
ZNF280B WILD-TYPE 59 72 71
'ZNF280B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S2315.  Gene #219: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF280B MUTATED 0 4 5
ZNF280B WILD-TYPE 70 116 95
'ZNF280B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S2316.  Gene #219: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF280B MUTATED 1 0 1 1 1 2 1 2 0
ZNF280B WILD-TYPE 40 26 29 28 38 67 19 12 22
'ZNF280B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.93

Table S2317.  Gene #219: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF280B MUTATED 2 2 4 4
ZNF280B WILD-TYPE 98 70 68 117
'ZNF280B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 0.98

Table S2318.  Gene #219: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF280B MUTATED 2 3 3 2 2
ZNF280B WILD-TYPE 57 72 71 117 36
'ZNF280B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 0.9

Table S2319.  Gene #219: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF280B MUTATED 2 1 4 2 3
ZNF280B WILD-TYPE 49 75 57 69 92
'ZNF280B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S2320.  Gene #219: 'ZNF280B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF280B MUTATED 0 2 2 1 3 2 1 1 0
ZNF280B WILD-TYPE 69 46 37 15 50 18 20 37 50
'MIER3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00187 (Fisher's exact test), Q value = 0.036

Table S2321.  Gene #220: 'MIER3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MIER3 MUTATED 6 0 0 3 0
MIER3 WILD-TYPE 26 18 46 24 23

Figure S799.  Get High-res Image Gene #220: 'MIER3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MIER3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00692 (Fisher's exact test), Q value = 0.078

Table S2322.  Gene #220: 'MIER3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MIER3 MUTATED 7 1 1
MIER3 WILD-TYPE 36 66 35

Figure S800.  Get High-res Image Gene #220: 'MIER3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MIER3 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S2323.  Gene #220: 'MIER3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MIER3 MUTATED 0 0 13
MIER3 WILD-TYPE 42 173 134

Figure S801.  Get High-res Image Gene #220: 'MIER3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MIER3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S2324.  Gene #220: 'MIER3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MIER3 MUTATED 1 0 2
MIER3 WILD-TYPE 61 73 73
'MIER3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S2325.  Gene #220: 'MIER3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MIER3 MUTATED 1 7 2
MIER3 WILD-TYPE 69 113 98
'MIER3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S2326.  Gene #220: 'MIER3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MIER3 MUTATED 0 0 2 2 3 2 0 0 1
MIER3 WILD-TYPE 41 26 28 27 36 67 20 14 21
'MIER3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.24

Table S2327.  Gene #220: 'MIER3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MIER3 MUTATED 1 2 1 9
MIER3 WILD-TYPE 99 70 71 112
'MIER3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00249 (Fisher's exact test), Q value = 0.042

Table S2328.  Gene #220: 'MIER3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MIER3 MUTATED 0 1 3 3 6
MIER3 WILD-TYPE 59 74 71 116 32

Figure S802.  Get High-res Image Gene #220: 'MIER3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MIER3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00771 (Fisher's exact test), Q value = 0.082

Table S2329.  Gene #220: 'MIER3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MIER3 MUTATED 0 3 0 1 9
MIER3 WILD-TYPE 51 73 61 70 86

Figure S803.  Get High-res Image Gene #220: 'MIER3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MIER3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00212 (Fisher's exact test), Q value = 0.039

Table S2330.  Gene #220: 'MIER3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MIER3 MUTATED 1 2 0 0 1 1 1 7 0
MIER3 WILD-TYPE 68 46 39 16 52 19 20 31 50

Figure S804.  Get High-res Image Gene #220: 'MIER3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SCLY MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S2331.  Gene #221: 'SCLY MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SCLY MUTATED 2 0 1 0 0
SCLY WILD-TYPE 30 18 45 27 23
'SCLY MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S2332.  Gene #221: 'SCLY MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SCLY MUTATED 2 0 1
SCLY WILD-TYPE 41 67 35
'SCLY MUTATION STATUS' versus 'CN_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S2333.  Gene #221: 'SCLY MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SCLY MUTATED 2 3 6
SCLY WILD-TYPE 40 170 141
'SCLY MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S2334.  Gene #221: 'SCLY MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SCLY MUTATED 3 2 4
SCLY WILD-TYPE 59 71 71
'SCLY MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S2335.  Gene #221: 'SCLY MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SCLY MUTATED 1 5 4
SCLY WILD-TYPE 69 115 96
'SCLY MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S2336.  Gene #221: 'SCLY MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SCLY MUTATED 0 0 0 3 2 4 1 0 0
SCLY WILD-TYPE 41 26 30 26 37 65 19 14 22
'SCLY MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.91

Table S2337.  Gene #221: 'SCLY MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SCLY MUTATED 2 2 4 3
SCLY WILD-TYPE 98 70 68 118
'SCLY MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S2338.  Gene #221: 'SCLY MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SCLY MUTATED 1 2 5 1 2
SCLY WILD-TYPE 58 73 69 118 36
'SCLY MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S2339.  Gene #221: 'SCLY MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SCLY MUTATED 1 4 2 2 2
SCLY WILD-TYPE 50 72 59 69 93
'SCLY MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0504 (Fisher's exact test), Q value = 0.24

Table S2340.  Gene #221: 'SCLY MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SCLY MUTATED 0 5 1 1 2 0 1 1 0
SCLY WILD-TYPE 69 43 38 15 51 20 20 37 50
'SCLY MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S2341.  Gene #221: 'SCLY MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SCLY MUTATED 1 0 0 0 2 0
SCLY WILD-TYPE 12 16 14 11 9 9
'SCLY MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S2342.  Gene #221: 'SCLY MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SCLY MUTATED 0 0 0 2 0 0 1 0 0
SCLY WILD-TYPE 11 7 7 7 8 7 10 9 5
'SCLT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0771 (Fisher's exact test), Q value = 0.3

Table S2343.  Gene #222: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SCLT1 MUTATED 3 0 0 2 0
SCLT1 WILD-TYPE 29 18 46 25 23
'SCLT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0666 (Fisher's exact test), Q value = 0.28

Table S2344.  Gene #222: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SCLT1 MUTATED 4 1 0
SCLT1 WILD-TYPE 39 66 36
'SCLT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00492 (Fisher's exact test), Q value = 0.065

Table S2345.  Gene #222: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SCLT1 MUTATED 0 4 14
SCLT1 WILD-TYPE 42 169 133

Figure S805.  Get High-res Image Gene #222: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SCLT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S2346.  Gene #222: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SCLT1 MUTATED 3 4 6
SCLT1 WILD-TYPE 59 69 69
'SCLT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0951 (Fisher's exact test), Q value = 0.34

Table S2347.  Gene #222: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SCLT1 MUTATED 1 6 9
SCLT1 WILD-TYPE 69 114 91
'SCLT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S2348.  Gene #222: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SCLT1 MUTATED 1 1 1 2 2 7 0 0 2
SCLT1 WILD-TYPE 40 25 29 27 37 62 20 14 20
'SCLT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S2349.  Gene #222: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SCLT1 MUTATED 2 6 5 5
SCLT1 WILD-TYPE 98 66 67 116
'SCLT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S2350.  Gene #222: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SCLT1 MUTATED 2 4 7 2 3
SCLT1 WILD-TYPE 57 71 67 117 35
'SCLT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.95

Table S2351.  Gene #222: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SCLT1 MUTATED 1 6 2 3 5
SCLT1 WILD-TYPE 50 70 59 68 90
'SCLT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00738 (Fisher's exact test), Q value = 0.08

Table S2352.  Gene #222: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SCLT1 MUTATED 1 2 0 4 5 2 1 1 1
SCLT1 WILD-TYPE 68 46 39 12 48 18 20 37 49

Figure S806.  Get High-res Image Gene #222: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S2353.  Gene #222: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SCLT1 MUTATED 1 0 2 0 2 1
SCLT1 WILD-TYPE 12 16 12 11 9 8
'SCLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.98

Table S2354.  Gene #222: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SCLT1 MUTATED 1 0 0 2 1 0 1 0 1
SCLT1 WILD-TYPE 10 7 7 7 7 7 10 9 4
'ERBB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S2355.  Gene #223: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ERBB2 MUTATED 2 0 1 2 0
ERBB2 WILD-TYPE 30 18 45 25 23
'ERBB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0676 (Fisher's exact test), Q value = 0.28

Table S2356.  Gene #223: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ERBB2 MUTATED 4 1 0
ERBB2 WILD-TYPE 39 66 36
'ERBB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S2357.  Gene #223: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ERBB2 MUTATED 3 12 12
ERBB2 WILD-TYPE 39 161 135
'ERBB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S2358.  Gene #223: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ERBB2 MUTATED 7 7 8
ERBB2 WILD-TYPE 55 66 67
'ERBB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0685 (Fisher's exact test), Q value = 0.28

Table S2359.  Gene #223: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ERBB2 MUTATED 2 7 12
ERBB2 WILD-TYPE 68 113 88
'ERBB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S2360.  Gene #223: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ERBB2 MUTATED 5 0 1 2 2 6 3 0 2
ERBB2 WILD-TYPE 36 26 29 27 37 63 17 14 20
'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S2361.  Gene #223: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ERBB2 MUTATED 6 8 8 5
ERBB2 WILD-TYPE 94 64 64 116
'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00309 (Fisher's exact test), Q value = 0.048

Table S2362.  Gene #223: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ERBB2 MUTATED 5 8 9 1 4
ERBB2 WILD-TYPE 54 67 65 118 34

Figure S807.  Get High-res Image Gene #223: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 0.32

Table S2363.  Gene #223: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ERBB2 MUTATED 5 11 4 2 5
ERBB2 WILD-TYPE 46 65 57 69 90
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S2364.  Gene #223: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ERBB2 MUTATED 10 5 1 1 2 3 1 3 1
ERBB2 WILD-TYPE 59 43 38 15 51 17 20 35 49
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S2365.  Gene #223: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ERBB2 MUTATED 0 1 1 1 1 2
ERBB2 WILD-TYPE 13 15 13 10 10 7
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S2366.  Gene #223: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ERBB2 MUTATED 2 0 1 0 1 0 1 1 0
ERBB2 WILD-TYPE 9 7 6 9 7 7 10 8 5
'HM13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.96

Table S2367.  Gene #224: 'HM13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HM13 MUTATED 1 2 2
HM13 WILD-TYPE 41 171 145
'HM13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0708 (Fisher's exact test), Q value = 0.29

Table S2368.  Gene #224: 'HM13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HM13 MUTATED 3 1 0
HM13 WILD-TYPE 59 72 75
'HM13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S2369.  Gene #224: 'HM13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HM13 MUTATED 1 1 3
HM13 WILD-TYPE 69 119 97
'HM13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.99

Table S2370.  Gene #224: 'HM13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HM13 MUTATED 1 0 0 0 0 2 1 0 1
HM13 WILD-TYPE 40 26 30 29 39 67 19 14 21
'HM13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S2371.  Gene #224: 'HM13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HM13 MUTATED 1 1 2 1
HM13 WILD-TYPE 99 71 70 120
'HM13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0668 (Fisher's exact test), Q value = 0.28

Table S2372.  Gene #224: 'HM13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HM13 MUTATED 2 0 2 0 1
HM13 WILD-TYPE 57 75 72 119 37
'HM13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.73

Table S2373.  Gene #224: 'HM13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HM13 MUTATED 0 2 2 0 1
HM13 WILD-TYPE 51 74 59 71 94
'HM13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S2374.  Gene #224: 'HM13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HM13 MUTATED 1 3 0 0 0 0 0 1 0
HM13 WILD-TYPE 68 45 39 16 53 20 21 37 50
'RASAL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S2375.  Gene #225: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RASAL2 MUTATED 3 1 0 2 1
RASAL2 WILD-TYPE 29 17 46 25 22
'RASAL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S2376.  Gene #225: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RASAL2 MUTATED 4 2 1
RASAL2 WILD-TYPE 39 65 35
'RASAL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0453 (Fisher's exact test), Q value = 0.23

Table S2377.  Gene #225: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RASAL2 MUTATED 1 3 10
RASAL2 WILD-TYPE 41 170 137

Figure S808.  Get High-res Image Gene #225: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RASAL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S2378.  Gene #225: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RASAL2 MUTATED 3 3 2
RASAL2 WILD-TYPE 59 70 73
'RASAL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.17

Table S2379.  Gene #225: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RASAL2 MUTATED 2 2 9
RASAL2 WILD-TYPE 68 118 91

Figure S809.  Get High-res Image Gene #225: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RASAL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 0.9

Table S2380.  Gene #225: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RASAL2 MUTATED 2 0 1 0 2 5 2 1 0
RASAL2 WILD-TYPE 39 26 29 29 37 64 18 13 22
'RASAL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S2381.  Gene #225: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RASAL2 MUTATED 2 2 5 6
RASAL2 WILD-TYPE 98 70 67 115
'RASAL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S2382.  Gene #225: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RASAL2 MUTATED 2 2 4 3 4
RASAL2 WILD-TYPE 57 73 70 116 34
'RASAL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.91

Table S2383.  Gene #225: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RASAL2 MUTATED 2 5 2 1 3
RASAL2 WILD-TYPE 49 71 59 70 92
'RASAL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.78

Table S2384.  Gene #225: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RASAL2 MUTATED 1 4 1 0 2 2 0 2 1
RASAL2 WILD-TYPE 68 44 38 16 51 18 21 36 49
'OSBPL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S2385.  Gene #226: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OSBPL2 MUTATED 0 4 7
OSBPL2 WILD-TYPE 42 169 140
'OSBPL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S2386.  Gene #226: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OSBPL2 MUTATED 4 2 5
OSBPL2 WILD-TYPE 58 71 70
'OSBPL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S2387.  Gene #226: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OSBPL2 MUTATED 0 3 5
OSBPL2 WILD-TYPE 70 117 95
'OSBPL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0845 (Fisher's exact test), Q value = 0.32

Table S2388.  Gene #226: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OSBPL2 MUTATED 0 1 0 1 0 3 3 0 0
OSBPL2 WILD-TYPE 41 25 30 28 39 66 17 14 22
'OSBPL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00882 (Fisher's exact test), Q value = 0.088

Table S2389.  Gene #226: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OSBPL2 MUTATED 2 5 4 0
OSBPL2 WILD-TYPE 98 67 68 121

Figure S810.  Get High-res Image Gene #226: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OSBPL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S2390.  Gene #226: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OSBPL2 MUTATED 3 3 5 0 0
OSBPL2 WILD-TYPE 56 72 69 119 38

Figure S811.  Get High-res Image Gene #226: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OSBPL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.094

Table S2391.  Gene #226: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OSBPL2 MUTATED 2 7 1 0 1
OSBPL2 WILD-TYPE 49 69 60 71 94

Figure S812.  Get High-res Image Gene #226: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OSBPL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S2392.  Gene #226: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OSBPL2 MUTATED 0 4 1 2 1 2 0 0 1
OSBPL2 WILD-TYPE 69 44 38 14 52 18 21 38 49

Figure S813.  Get High-res Image Gene #226: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OVGP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.77

Table S2393.  Gene #227: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OVGP1 MUTATED 0 7 7
OVGP1 WILD-TYPE 42 166 140
'OVGP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S2394.  Gene #227: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OVGP1 MUTATED 3 4 5
OVGP1 WILD-TYPE 59 69 70
'OVGP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S2395.  Gene #227: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OVGP1 MUTATED 3 5 3
OVGP1 WILD-TYPE 67 115 97
'OVGP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.92

Table S2396.  Gene #227: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OVGP1 MUTATED 1 3 1 1 1 2 1 1 0
OVGP1 WILD-TYPE 40 23 29 28 38 67 19 13 22
'OVGP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S2397.  Gene #227: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OVGP1 MUTATED 3 3 4 4
OVGP1 WILD-TYPE 97 69 68 117
'OVGP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S2398.  Gene #227: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OVGP1 MUTATED 4 3 3 3 1
OVGP1 WILD-TYPE 55 72 71 116 37
'OVGP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S2399.  Gene #227: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OVGP1 MUTATED 3 5 2 0 3
OVGP1 WILD-TYPE 48 71 59 71 92
'OVGP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.76

Table S2400.  Gene #227: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OVGP1 MUTATED 4 3 0 2 1 0 0 1 2
OVGP1 WILD-TYPE 65 45 39 14 52 20 21 37 48
'OVGP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.97

Table S2401.  Gene #227: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OVGP1 MUTATED 0 1 0 1 1 1
OVGP1 WILD-TYPE 13 15 14 10 10 8
'OVGP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S2402.  Gene #227: 'OVGP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OVGP1 MUTATED 1 0 0 1 0 0 2 0 0
OVGP1 WILD-TYPE 10 7 7 8 8 7 9 9 5
'GMCL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S2403.  Gene #228: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GMCL1 MUTATED 1 4 5
GMCL1 WILD-TYPE 41 169 142
'GMCL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.73

Table S2404.  Gene #228: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GMCL1 MUTATED 5 2 3
GMCL1 WILD-TYPE 57 71 72
'GMCL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S2405.  Gene #228: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GMCL1 MUTATED 2 3 5
GMCL1 WILD-TYPE 68 117 95
'GMCL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 0.89

Table S2406.  Gene #228: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GMCL1 MUTATED 1 0 1 1 0 5 0 1 1
GMCL1 WILD-TYPE 40 26 29 28 39 64 20 13 21
'GMCL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.21

Table S2407.  Gene #228: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GMCL1 MUTATED 3 3 4 0
GMCL1 WILD-TYPE 97 69 68 121

Figure S814.  Get High-res Image Gene #228: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GMCL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S2408.  Gene #228: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GMCL1 MUTATED 2 5 3 0 0
GMCL1 WILD-TYPE 57 70 71 119 38

Figure S815.  Get High-res Image Gene #228: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GMCL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S2409.  Gene #228: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GMCL1 MUTATED 1 5 1 2 1
GMCL1 WILD-TYPE 50 71 60 69 94
'GMCL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S2410.  Gene #228: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GMCL1 MUTATED 4 1 1 1 2 0 0 0 1
GMCL1 WILD-TYPE 65 47 38 15 51 20 21 38 49
'GMCL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S2411.  Gene #228: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GMCL1 MUTATED 1 0 2 0 2 0
GMCL1 WILD-TYPE 12 16 12 11 9 9
'GMCL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S2412.  Gene #228: 'GMCL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GMCL1 MUTATED 1 0 1 0 1 0 1 1 0
GMCL1 WILD-TYPE 10 7 6 9 7 7 10 8 5
'ZNF789 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S2413.  Gene #229: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF789 MUTATED 1 1 5
ZNF789 WILD-TYPE 41 172 142
'ZNF789 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.78

Table S2414.  Gene #229: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF789 MUTATED 3 1 1
ZNF789 WILD-TYPE 59 72 74
'ZNF789 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00152 (Fisher's exact test), Q value = 0.032

Table S2415.  Gene #229: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF789 MUTATED 0 0 6
ZNF789 WILD-TYPE 70 120 94

Figure S816.  Get High-res Image Gene #229: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZNF789 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.86

Table S2416.  Gene #229: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF789 MUTATED 1 0 0 0 0 4 1 0 0
ZNF789 WILD-TYPE 40 26 30 29 39 65 19 14 22
'ZNF789 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S2417.  Gene #229: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF789 MUTATED 1 2 2 2
ZNF789 WILD-TYPE 99 70 70 119
'ZNF789 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0785 (Fisher's exact test), Q value = 0.3

Table S2418.  Gene #229: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF789 MUTATED 2 2 1 0 2
ZNF789 WILD-TYPE 57 73 73 119 36
'ZNF789 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S2419.  Gene #229: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF789 MUTATED 0 2 1 1 2
ZNF789 WILD-TYPE 51 74 60 70 93
'ZNF789 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S2420.  Gene #229: 'ZNF789 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF789 MUTATED 1 2 0 1 0 0 0 1 1
ZNF789 WILD-TYPE 68 46 39 15 53 20 21 37 49
'IVL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S2421.  Gene #230: 'IVL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IVL MUTATED 1 9 7
IVL WILD-TYPE 41 164 140
'IVL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S2422.  Gene #230: 'IVL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IVL MUTATED 3 7 5
IVL WILD-TYPE 59 66 70
'IVL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S2423.  Gene #230: 'IVL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IVL MUTATED 2 4 6
IVL WILD-TYPE 68 116 94
'IVL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S2424.  Gene #230: 'IVL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IVL MUTATED 4 2 0 2 0 4 0 0 0
IVL WILD-TYPE 37 24 30 27 39 65 20 14 22
'IVL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S2425.  Gene #230: 'IVL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IVL MUTATED 5 3 6 3
IVL WILD-TYPE 95 69 66 118
'IVL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S2426.  Gene #230: 'IVL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IVL MUTATED 6 5 3 2 1
IVL WILD-TYPE 53 70 71 117 37
'IVL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S2427.  Gene #230: 'IVL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IVL MUTATED 2 5 5 4 1
IVL WILD-TYPE 49 71 56 67 94
'IVL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S2428.  Gene #230: 'IVL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IVL MUTATED 6 4 0 2 1 1 0 1 2
IVL WILD-TYPE 63 44 39 14 52 19 21 37 48
'IVL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S2429.  Gene #230: 'IVL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IVL MUTATED 0 0 1 2 1 1
IVL WILD-TYPE 13 16 13 9 10 8
'IVL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S2430.  Gene #230: 'IVL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IVL MUTATED 1 0 2 0 1 1 0 0 0
IVL WILD-TYPE 10 7 5 9 7 6 11 9 5
'SPR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.081 (Fisher's exact test), Q value = 0.31

Table S2431.  Gene #231: 'SPR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SPR MUTATED 0 1 6
SPR WILD-TYPE 42 172 141
'SPR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.098

Table S2432.  Gene #231: 'SPR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SPR MUTATED 1 0 6
SPR WILD-TYPE 61 73 69

Figure S817.  Get High-res Image Gene #231: 'SPR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SPR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2433.  Gene #231: 'SPR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SPR MUTATED 1 2 1
SPR WILD-TYPE 69 118 99
'SPR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.54

Table S2434.  Gene #231: 'SPR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SPR MUTATED 0 0 0 0 1 1 2 0 0
SPR WILD-TYPE 41 26 30 29 38 68 18 14 22
'SPR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0056 (Fisher's exact test), Q value = 0.071

Table S2435.  Gene #231: 'SPR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SPR MUTATED 1 5 1 0
SPR WILD-TYPE 99 67 71 121

Figure S818.  Get High-res Image Gene #231: 'SPR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SPR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00921 (Fisher's exact test), Q value = 0.09

Table S2436.  Gene #231: 'SPR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SPR MUTATED 0 2 5 0 0
SPR WILD-TYPE 59 73 69 119 38

Figure S819.  Get High-res Image Gene #231: 'SPR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SPR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S2437.  Gene #231: 'SPR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SPR MUTATED 2 3 1 0 1
SPR WILD-TYPE 49 73 60 71 94
'SPR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S2438.  Gene #231: 'SPR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SPR MUTATED 1 1 0 2 1 1 0 1 0
SPR WILD-TYPE 68 47 39 14 52 19 21 37 50
'C2ORF77 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S2439.  Gene #232: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C2ORF77 MUTATED 1 1 0 1 0
C2ORF77 WILD-TYPE 31 17 46 26 23
'C2ORF77 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2440.  Gene #232: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C2ORF77 MUTATED 1 1 1
C2ORF77 WILD-TYPE 42 66 35
'C2ORF77 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S2441.  Gene #232: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C2ORF77 MUTATED 0 1 7
C2ORF77 WILD-TYPE 42 172 140

Figure S820.  Get High-res Image Gene #232: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C2ORF77 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S2442.  Gene #232: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C2ORF77 MUTATED 2 0 3
C2ORF77 WILD-TYPE 60 73 72
'C2ORF77 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S2443.  Gene #232: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C2ORF77 MUTATED 2 1 5
C2ORF77 WILD-TYPE 68 119 95
'C2ORF77 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S2444.  Gene #232: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C2ORF77 MUTATED 3 0 1 0 1 3 0 0 0
C2ORF77 WILD-TYPE 38 26 29 29 38 66 20 14 22
'C2ORF77 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S2445.  Gene #232: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C2ORF77 MUTATED 0 2 3 3
C2ORF77 WILD-TYPE 100 70 69 118
'C2ORF77 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S2446.  Gene #232: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C2ORF77 MUTATED 1 0 4 2 1
C2ORF77 WILD-TYPE 58 75 70 117 37
'C2ORF77 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S2447.  Gene #232: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C2ORF77 MUTATED 0 3 3 0 2
C2ORF77 WILD-TYPE 51 73 58 71 93
'C2ORF77 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S2448.  Gene #232: 'C2ORF77 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C2ORF77 MUTATED 2 3 0 0 0 1 1 1 0
C2ORF77 WILD-TYPE 67 45 39 16 53 19 20 37 50
'NT5DC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S2449.  Gene #233: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NT5DC3 MUTATED 1 4 7
NT5DC3 WILD-TYPE 41 169 140
'NT5DC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S2450.  Gene #233: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NT5DC3 MUTATED 3 2 6
NT5DC3 WILD-TYPE 59 71 69
'NT5DC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.93

Table S2451.  Gene #233: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NT5DC3 MUTATED 3 3 5
NT5DC3 WILD-TYPE 67 117 95
'NT5DC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S2452.  Gene #233: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NT5DC3 MUTATED 2 0 0 1 2 5 1 0 0
NT5DC3 WILD-TYPE 39 26 30 28 37 64 19 14 22
'NT5DC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S2453.  Gene #233: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NT5DC3 MUTATED 3 5 3 1
NT5DC3 WILD-TYPE 97 67 69 120
'NT5DC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00944 (Fisher's exact test), Q value = 0.091

Table S2454.  Gene #233: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NT5DC3 MUTATED 1 4 6 0 1
NT5DC3 WILD-TYPE 58 71 68 119 37

Figure S821.  Get High-res Image Gene #233: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NT5DC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.19

Table S2455.  Gene #233: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NT5DC3 MUTATED 1 7 2 0 2
NT5DC3 WILD-TYPE 50 69 59 71 93

Figure S822.  Get High-res Image Gene #233: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NT5DC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0876 (Fisher's exact test), Q value = 0.32

Table S2456.  Gene #233: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NT5DC3 MUTATED 2 3 1 3 1 1 0 1 0
NT5DC3 WILD-TYPE 67 45 38 13 52 19 21 37 50
'NT5DC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00641 (Fisher's exact test), Q value = 0.075

Table S2457.  Gene #233: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NT5DC3 MUTATED 0 0 0 0 3 0
NT5DC3 WILD-TYPE 13 16 14 11 8 9

Figure S823.  Get High-res Image Gene #233: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'NT5DC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S2458.  Gene #233: 'NT5DC3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NT5DC3 MUTATED 0 0 0 1 1 0 1 0 0
NT5DC3 WILD-TYPE 11 7 7 8 7 7 10 9 5
'ITPR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00231 (Fisher's exact test), Q value = 0.041

Table S2459.  Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ITPR1 MUTATED 4 0 0 5 0
ITPR1 WILD-TYPE 28 18 46 22 23

Figure S824.  Get High-res Image Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ITPR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00574 (Fisher's exact test), Q value = 0.072

Table S2460.  Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ITPR1 MUTATED 7 2 0
ITPR1 WILD-TYPE 36 65 36

Figure S825.  Get High-res Image Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ITPR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.01

Table S2461.  Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ITPR1 MUTATED 2 8 26
ITPR1 WILD-TYPE 40 165 121

Figure S826.  Get High-res Image Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ITPR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.65

Table S2462.  Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ITPR1 MUTATED 11 7 8
ITPR1 WILD-TYPE 51 66 67
'ITPR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S2463.  Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ITPR1 MUTATED 4 14 16
ITPR1 WILD-TYPE 66 106 84
'ITPR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S2464.  Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ITPR1 MUTATED 2 3 2 3 6 12 4 1 1
ITPR1 WILD-TYPE 39 23 28 26 33 57 16 13 21
'ITPR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S2465.  Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ITPR1 MUTATED 7 9 10 10
ITPR1 WILD-TYPE 93 63 62 111
'ITPR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S2466.  Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ITPR1 MUTATED 3 9 14 2 8
ITPR1 WILD-TYPE 56 66 60 117 30

Figure S827.  Get High-res Image Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ITPR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00903 (Fisher's exact test), Q value = 0.089

Table S2467.  Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ITPR1 MUTATED 2 16 6 3 9
ITPR1 WILD-TYPE 49 60 55 68 86

Figure S828.  Get High-res Image Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ITPR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0246 (Fisher's exact test), Q value = 0.16

Table S2468.  Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ITPR1 MUTATED 5 8 2 6 2 3 2 4 4
ITPR1 WILD-TYPE 64 40 37 10 51 17 19 34 46

Figure S829.  Get High-res Image Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ITPR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00959 (Fisher's exact test), Q value = 0.092

Table S2469.  Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ITPR1 MUTATED 2 1 1 1 6 0
ITPR1 WILD-TYPE 11 15 13 10 5 9

Figure S830.  Get High-res Image Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ITPR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.56

Table S2470.  Gene #234: 'ITPR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ITPR1 MUTATED 0 1 0 3 1 1 4 1 0
ITPR1 WILD-TYPE 11 6 7 6 7 6 7 8 5
'PDCD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0868 (Fisher's exact test), Q value = 0.32

Table S2471.  Gene #235: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PDCD5 MUTATED 1 1 6
PDCD5 WILD-TYPE 41 172 141
'PDCD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S2472.  Gene #235: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PDCD5 MUTATED 3 2 2
PDCD5 WILD-TYPE 59 71 73
'PDCD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S2473.  Gene #235: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PDCD5 MUTATED 2 2 3
PDCD5 WILD-TYPE 68 118 97
'PDCD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S2474.  Gene #235: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PDCD5 MUTATED 2 1 0 1 0 2 0 0 1
PDCD5 WILD-TYPE 39 25 30 28 39 67 20 14 21
'PDCD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S2475.  Gene #235: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PDCD5 MUTATED 1 3 3 1
PDCD5 WILD-TYPE 99 69 69 120
'PDCD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.77

Table S2476.  Gene #235: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PDCD5 MUTATED 2 2 3 1 0
PDCD5 WILD-TYPE 57 73 71 118 38
'PDCD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S2477.  Gene #235: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PDCD5 MUTATED 0 2 3 0 3
PDCD5 WILD-TYPE 51 74 58 71 92
'PDCD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.89

Table S2478.  Gene #235: 'PDCD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PDCD5 MUTATED 2 1 2 0 0 1 1 0 1
PDCD5 WILD-TYPE 67 47 37 16 53 19 20 38 49
'AKAP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S2479.  Gene #236: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AKAP3 MUTATED 2 0 2 1 0
AKAP3 WILD-TYPE 30 18 44 26 23
'AKAP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S2480.  Gene #236: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AKAP3 MUTATED 2 2 1
AKAP3 WILD-TYPE 41 65 35
'AKAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0027 (Fisher's exact test), Q value = 0.044

Table S2481.  Gene #236: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AKAP3 MUTATED 3 3 15
AKAP3 WILD-TYPE 39 170 132

Figure S831.  Get High-res Image Gene #236: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AKAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S2482.  Gene #236: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AKAP3 MUTATED 6 1 8
AKAP3 WILD-TYPE 56 72 67

Figure S832.  Get High-res Image Gene #236: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'AKAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S2483.  Gene #236: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AKAP3 MUTATED 7 5 6
AKAP3 WILD-TYPE 63 115 94
'AKAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.62

Table S2484.  Gene #236: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AKAP3 MUTATED 4 0 3 2 5 3 0 1 0
AKAP3 WILD-TYPE 37 26 27 27 34 66 20 13 22
'AKAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00402 (Fisher's exact test), Q value = 0.057

Table S2485.  Gene #236: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AKAP3 MUTATED 2 11 3 5
AKAP3 WILD-TYPE 98 61 69 116

Figure S833.  Get High-res Image Gene #236: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'AKAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0753 (Fisher's exact test), Q value = 0.3

Table S2486.  Gene #236: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AKAP3 MUTATED 3 3 9 3 3
AKAP3 WILD-TYPE 56 72 65 116 35
'AKAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S2487.  Gene #236: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AKAP3 MUTATED 1 8 3 2 6
AKAP3 WILD-TYPE 50 68 58 69 89
'AKAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S2488.  Gene #236: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AKAP3 MUTATED 6 2 0 2 2 2 0 3 3
AKAP3 WILD-TYPE 63 46 39 14 51 18 21 35 47
'AKAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.84

Table S2489.  Gene #236: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AKAP3 MUTATED 0 1 2 0 0 1
AKAP3 WILD-TYPE 13 15 12 11 11 8
'AKAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S2490.  Gene #236: 'AKAP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AKAP3 MUTATED 2 0 0 0 2 0 0 0 0
AKAP3 WILD-TYPE 9 7 7 9 6 7 11 9 5
'TNFAIP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.89

Table S2491.  Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TNFAIP3 MUTATED 2 0 1 0 0
TNFAIP3 WILD-TYPE 30 18 45 27 23
'TNFAIP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S2492.  Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TNFAIP3 MUTATED 2 0 1
TNFAIP3 WILD-TYPE 41 67 35
'TNFAIP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00361 (Fisher's exact test), Q value = 0.053

Table S2493.  Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TNFAIP3 MUTATED 2 9 23
TNFAIP3 WILD-TYPE 40 164 124

Figure S834.  Get High-res Image Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TNFAIP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00569 (Fisher's exact test), Q value = 0.071

Table S2494.  Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TNFAIP3 MUTATED 9 4 18
TNFAIP3 WILD-TYPE 53 69 57

Figure S835.  Get High-res Image Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TNFAIP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0423 (Fisher's exact test), Q value = 0.22

Table S2495.  Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TNFAIP3 MUTATED 2 12 14
TNFAIP3 WILD-TYPE 68 108 86

Figure S836.  Get High-res Image Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TNFAIP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S2496.  Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TNFAIP3 MUTATED 3 1 1 4 3 10 4 2 0
TNFAIP3 WILD-TYPE 38 25 29 25 36 59 16 12 22
'TNFAIP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S2497.  Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TNFAIP3 MUTATED 5 16 9 4
TNFAIP3 WILD-TYPE 95 56 63 117

Figure S837.  Get High-res Image Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TNFAIP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S2498.  Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TNFAIP3 MUTATED 4 9 17 2 2
TNFAIP3 WILD-TYPE 55 66 57 117 36

Figure S838.  Get High-res Image Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TNFAIP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.009

Table S2499.  Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TNFAIP3 MUTATED 6 18 3 3 4
TNFAIP3 WILD-TYPE 45 58 58 68 91

Figure S839.  Get High-res Image Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TNFAIP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S2500.  Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TNFAIP3 MUTATED 10 5 3 4 4 3 0 2 3
TNFAIP3 WILD-TYPE 59 43 36 12 49 17 21 36 47
'TNFAIP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S2501.  Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TNFAIP3 MUTATED 0 0 3 1 1 0
TNFAIP3 WILD-TYPE 13 16 11 10 10 9
'TNFAIP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.054 (Fisher's exact test), Q value = 0.25

Table S2502.  Gene #237: 'TNFAIP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TNFAIP3 MUTATED 0 0 0 0 2 0 3 0 0
TNFAIP3 WILD-TYPE 11 7 7 9 6 7 8 9 5
'GFI1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0525 (Fisher's exact test), Q value = 0.25

Table S2503.  Gene #238: 'GFI1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GFI1 MUTATED 3 0 0 0 0
GFI1 WILD-TYPE 29 18 46 27 23
'GFI1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S2504.  Gene #238: 'GFI1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GFI1 MUTATED 3 0 0
GFI1 WILD-TYPE 40 67 36

Figure S840.  Get High-res Image Gene #238: 'GFI1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GFI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S2505.  Gene #238: 'GFI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GFI1 MUTATED 1 4 5
GFI1 WILD-TYPE 41 169 142
'GFI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S2506.  Gene #238: 'GFI1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GFI1 MUTATED 3 2 2
GFI1 WILD-TYPE 59 71 73
'GFI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.29

Table S2507.  Gene #238: 'GFI1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GFI1 MUTATED 1 1 6
GFI1 WILD-TYPE 69 119 94
'GFI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S2508.  Gene #238: 'GFI1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GFI1 MUTATED 1 1 1 0 1 4 0 0 0
GFI1 WILD-TYPE 40 25 29 29 38 65 20 14 22
'GFI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S2509.  Gene #238: 'GFI1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GFI1 MUTATED 3 1 3 3
GFI1 WILD-TYPE 97 71 69 118
'GFI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0198 (Fisher's exact test), Q value = 0.14

Table S2510.  Gene #238: 'GFI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GFI1 MUTATED 1 4 2 0 3
GFI1 WILD-TYPE 58 71 72 119 35

Figure S841.  Get High-res Image Gene #238: 'GFI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GFI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S2511.  Gene #238: 'GFI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GFI1 MUTATED 1 3 1 2 3
GFI1 WILD-TYPE 50 73 60 69 92
'GFI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.49

Table S2512.  Gene #238: 'GFI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GFI1 MUTATED 5 1 0 0 0 0 0 3 1
GFI1 WILD-TYPE 64 47 39 16 53 20 21 35 49
'TWISTNB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S2513.  Gene #239: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TWISTNB MUTATED 0 4 4
TWISTNB WILD-TYPE 42 169 143
'TWISTNB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.58

Table S2514.  Gene #239: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TWISTNB MUTATED 4 2 1
TWISTNB WILD-TYPE 58 71 74
'TWISTNB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2515.  Gene #239: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TWISTNB MUTATED 1 3 2
TWISTNB WILD-TYPE 69 117 98
'TWISTNB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.95

Table S2516.  Gene #239: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TWISTNB MUTATED 2 0 1 0 1 1 0 1 0
TWISTNB WILD-TYPE 39 26 29 29 38 68 20 13 22
'TWISTNB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.94

Table S2517.  Gene #239: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TWISTNB MUTATED 3 2 2 1
TWISTNB WILD-TYPE 97 70 70 120
'TWISTNB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0297 (Fisher's exact test), Q value = 0.18

Table S2518.  Gene #239: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TWISTNB MUTATED 4 1 2 0 1
TWISTNB WILD-TYPE 55 74 72 119 37

Figure S842.  Get High-res Image Gene #239: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TWISTNB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.62

Table S2519.  Gene #239: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TWISTNB MUTATED 0 4 2 1 1
TWISTNB WILD-TYPE 51 72 59 70 94
'TWISTNB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S2520.  Gene #239: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TWISTNB MUTATED 1 3 0 2 1 0 0 1 0
TWISTNB WILD-TYPE 68 45 39 14 52 20 21 37 50
'TWISTNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S2521.  Gene #239: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TWISTNB MUTATED 1 0 1 0 1 0
TWISTNB WILD-TYPE 12 16 13 11 10 9
'TWISTNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.86

Table S2522.  Gene #239: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TWISTNB MUTATED 0 0 1 1 1 0 0 0 0
TWISTNB WILD-TYPE 11 7 6 8 7 7 11 9 5
'ASB11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.21

Table S2523.  Gene #240: 'ASB11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ASB11 MUTATED 0 1 7
ASB11 WILD-TYPE 42 172 140

Figure S843.  Get High-res Image Gene #240: 'ASB11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ASB11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S2524.  Gene #240: 'ASB11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ASB11 MUTATED 4 1 3
ASB11 WILD-TYPE 58 72 72
'ASB11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0533 (Fisher's exact test), Q value = 0.25

Table S2525.  Gene #240: 'ASB11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ASB11 MUTATED 0 1 5
ASB11 WILD-TYPE 70 119 95
'ASB11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 0.99

Table S2526.  Gene #240: 'ASB11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ASB11 MUTATED 1 0 0 1 0 4 0 0 0
ASB11 WILD-TYPE 40 26 30 28 39 65 20 14 22
'ASB11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00084 (Fisher's exact test), Q value = 0.022

Table S2527.  Gene #240: 'ASB11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ASB11 MUTATED 0 5 3 0
ASB11 WILD-TYPE 100 67 69 121

Figure S844.  Get High-res Image Gene #240: 'ASB11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ASB11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S2528.  Gene #240: 'ASB11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ASB11 MUTATED 2 1 5 0 0
ASB11 WILD-TYPE 57 74 69 119 38

Figure S845.  Get High-res Image Gene #240: 'ASB11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ASB11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0387 (Fisher's exact test), Q value = 0.21

Table S2529.  Gene #240: 'ASB11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ASB11 MUTATED 0 5 2 0 1
ASB11 WILD-TYPE 51 71 59 71 94

Figure S846.  Get High-res Image Gene #240: 'ASB11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ASB11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0941 (Fisher's exact test), Q value = 0.33

Table S2530.  Gene #240: 'ASB11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ASB11 MUTATED 4 1 0 2 0 0 0 0 1
ASB11 WILD-TYPE 65 47 39 14 53 20 21 38 49
'ETAA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S2531.  Gene #241: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ETAA1 MUTATED 2 1 0 1 0
ETAA1 WILD-TYPE 30 17 46 26 23
'ETAA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S2532.  Gene #241: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ETAA1 MUTATED 2 1 1
ETAA1 WILD-TYPE 41 66 35
'ETAA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0678 (Fisher's exact test), Q value = 0.28

Table S2533.  Gene #241: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ETAA1 MUTATED 1 4 11
ETAA1 WILD-TYPE 41 169 136
'ETAA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.76

Table S2534.  Gene #241: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ETAA1 MUTATED 4 2 6
ETAA1 WILD-TYPE 58 71 69
'ETAA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S2535.  Gene #241: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ETAA1 MUTATED 3 5 6
ETAA1 WILD-TYPE 67 115 94
'ETAA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S2536.  Gene #241: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ETAA1 MUTATED 4 0 1 1 1 4 1 1 1
ETAA1 WILD-TYPE 37 26 29 28 38 65 19 13 21
'ETAA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0673 (Fisher's exact test), Q value = 0.28

Table S2537.  Gene #241: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ETAA1 MUTATED 2 7 4 3
ETAA1 WILD-TYPE 98 65 68 118
'ETAA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.026 (Fisher's exact test), Q value = 0.17

Table S2538.  Gene #241: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ETAA1 MUTATED 3 1 8 2 2
ETAA1 WILD-TYPE 56 74 66 117 36

Figure S847.  Get High-res Image Gene #241: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ETAA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S2539.  Gene #241: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ETAA1 MUTATED 3 5 3 0 5
ETAA1 WILD-TYPE 48 71 58 71 90
'ETAA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S2540.  Gene #241: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ETAA1 MUTATED 1 4 0 2 2 2 1 3 1
ETAA1 WILD-TYPE 68 44 39 14 51 18 20 35 49
'ETAA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S2541.  Gene #241: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ETAA1 MUTATED 0 1 0 1 1 0
ETAA1 WILD-TYPE 13 15 14 10 10 9
'ETAA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S2542.  Gene #241: 'ETAA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ETAA1 MUTATED 0 0 1 1 0 0 1 0 0
ETAA1 WILD-TYPE 11 7 6 8 8 7 10 9 5
'NUP188 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.74

Table S2543.  Gene #242: 'NUP188 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NUP188 MUTATED 3 0 1 1 0
NUP188 WILD-TYPE 29 18 45 26 23
'NUP188 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S2544.  Gene #242: 'NUP188 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NUP188 MUTATED 2 1 2
NUP188 WILD-TYPE 41 66 34
'NUP188 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S2545.  Gene #242: 'NUP188 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NUP188 MUTATED 1 4 14
NUP188 WILD-TYPE 41 169 133

Figure S848.  Get High-res Image Gene #242: 'NUP188 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NUP188 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S2546.  Gene #242: 'NUP188 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NUP188 MUTATED 6 2 6
NUP188 WILD-TYPE 56 71 69
'NUP188 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.63

Table S2547.  Gene #242: 'NUP188 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NUP188 MUTATED 4 4 8
NUP188 WILD-TYPE 66 116 92
'NUP188 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S2548.  Gene #242: 'NUP188 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NUP188 MUTATED 1 1 1 1 2 8 1 0 1
NUP188 WILD-TYPE 40 25 29 28 37 61 19 14 21
'NUP188 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S2549.  Gene #242: 'NUP188 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NUP188 MUTATED 3 6 5 5
NUP188 WILD-TYPE 97 66 67 116
'NUP188 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0824 (Fisher's exact test), Q value = 0.31

Table S2550.  Gene #242: 'NUP188 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NUP188 MUTATED 4 1 8 4 2
NUP188 WILD-TYPE 55 74 66 115 36
'NUP188 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S2551.  Gene #242: 'NUP188 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NUP188 MUTATED 1 7 4 2 3
NUP188 WILD-TYPE 50 69 57 69 92
'NUP188 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00809 (Fisher's exact test), Q value = 0.084

Table S2552.  Gene #242: 'NUP188 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NUP188 MUTATED 3 5 0 4 1 1 0 0 3
NUP188 WILD-TYPE 66 43 39 12 52 19 21 38 47

Figure S849.  Get High-res Image Gene #242: 'NUP188 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NUP188 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S2553.  Gene #242: 'NUP188 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NUP188 MUTATED 1 2 0 1 3 0
NUP188 WILD-TYPE 12 14 14 10 8 9
'NUP188 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S2554.  Gene #242: 'NUP188 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NUP188 MUTATED 1 1 1 2 1 0 1 0 0
NUP188 WILD-TYPE 10 6 6 7 7 7 10 9 5
'GNPAT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S2555.  Gene #243: 'GNPAT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GNPAT MUTATED 2 6 9
GNPAT WILD-TYPE 40 167 138
'GNPAT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S2556.  Gene #243: 'GNPAT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GNPAT MUTATED 5 3 8
GNPAT WILD-TYPE 57 70 67
'GNPAT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S2557.  Gene #243: 'GNPAT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GNPAT MUTATED 1 9 7
GNPAT WILD-TYPE 69 111 93
'GNPAT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0541 (Fisher's exact test), Q value = 0.25

Table S2558.  Gene #243: 'GNPAT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GNPAT MUTATED 2 0 0 6 1 4 2 1 1
GNPAT WILD-TYPE 39 26 30 23 38 65 18 13 21
'GNPAT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 0.23

Table S2559.  Gene #243: 'GNPAT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GNPAT MUTATED 6 5 5 1
GNPAT WILD-TYPE 94 67 67 120

Figure S850.  Get High-res Image Gene #243: 'GNPAT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GNPAT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00126 (Fisher's exact test), Q value = 0.029

Table S2560.  Gene #243: 'GNPAT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GNPAT MUTATED 5 3 8 0 1
GNPAT WILD-TYPE 54 72 66 119 37

Figure S851.  Get High-res Image Gene #243: 'GNPAT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GNPAT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00356 (Fisher's exact test), Q value = 0.053

Table S2561.  Gene #243: 'GNPAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GNPAT MUTATED 2 10 3 1 1
GNPAT WILD-TYPE 49 66 58 70 94

Figure S852.  Get High-res Image Gene #243: 'GNPAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GNPAT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.54

Table S2562.  Gene #243: 'GNPAT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GNPAT MUTATED 6 2 3 2 3 0 0 1 0
GNPAT WILD-TYPE 63 46 36 14 50 20 21 37 50
'GNPAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00137 (Fisher's exact test), Q value = 0.03

Table S2563.  Gene #243: 'GNPAT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GNPAT MUTATED 0 0 0 1 4 0
GNPAT WILD-TYPE 13 16 14 10 7 9

Figure S853.  Get High-res Image Gene #243: 'GNPAT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GNPAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 0.97

Table S2564.  Gene #243: 'GNPAT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GNPAT MUTATED 0 0 0 1 1 1 2 0 0
GNPAT WILD-TYPE 11 7 7 8 7 6 9 9 5
'TRIM32 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.74

Table S2565.  Gene #244: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TRIM32 MUTATED 3 0 1 1 0
TRIM32 WILD-TYPE 29 18 45 26 23
'TRIM32 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S2566.  Gene #244: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TRIM32 MUTATED 3 1 1
TRIM32 WILD-TYPE 40 66 35
'TRIM32 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.45

Table S2567.  Gene #244: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRIM32 MUTATED 1 3 8
TRIM32 WILD-TYPE 41 170 139
'TRIM32 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.78

Table S2568.  Gene #244: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRIM32 MUTATED 3 2 1
TRIM32 WILD-TYPE 59 71 74
'TRIM32 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S2569.  Gene #244: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRIM32 MUTATED 2 3 5
TRIM32 WILD-TYPE 68 117 95
'TRIM32 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.61

Table S2570.  Gene #244: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRIM32 MUTATED 0 0 1 2 3 2 2 0 0
TRIM32 WILD-TYPE 41 26 29 27 36 67 18 14 22
'TRIM32 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S2571.  Gene #244: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRIM32 MUTATED 3 2 2 5
TRIM32 WILD-TYPE 97 70 70 116
'TRIM32 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S2572.  Gene #244: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRIM32 MUTATED 1 2 3 2 4
TRIM32 WILD-TYPE 58 73 71 117 34
'TRIM32 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S2573.  Gene #244: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRIM32 MUTATED 1 3 1 2 5
TRIM32 WILD-TYPE 50 73 60 69 90
'TRIM32 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0791 (Fisher's exact test), Q value = 0.31

Table S2574.  Gene #244: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRIM32 MUTATED 1 1 1 0 1 2 0 5 1
TRIM32 WILD-TYPE 68 47 38 16 52 18 21 33 49
'TRIM32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S2575.  Gene #244: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TRIM32 MUTATED 1 1 2 0 0 0
TRIM32 WILD-TYPE 12 15 12 11 11 9
'TRIM32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S2576.  Gene #244: 'TRIM32 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TRIM32 MUTATED 1 0 0 0 1 0 1 0 1
TRIM32 WILD-TYPE 10 7 7 9 7 7 10 9 4
'HAS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.21

Table S2577.  Gene #245: 'HAS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HAS2 MUTATED 1 1 7
HAS2 WILD-TYPE 41 172 140

Figure S854.  Get High-res Image Gene #245: 'HAS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HAS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S2578.  Gene #245: 'HAS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HAS2 MUTATED 0 1 6
HAS2 WILD-TYPE 62 72 69

Figure S855.  Get High-res Image Gene #245: 'HAS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HAS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2579.  Gene #245: 'HAS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HAS2 MUTATED 2 3 3
HAS2 WILD-TYPE 68 117 97
'HAS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S2580.  Gene #245: 'HAS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HAS2 MUTATED 0 1 0 0 1 3 1 2 0
HAS2 WILD-TYPE 41 25 30 29 38 66 19 12 22
'HAS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 0.27

Table S2581.  Gene #245: 'HAS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HAS2 MUTATED 2 5 0 2
HAS2 WILD-TYPE 98 67 72 119
'HAS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S2582.  Gene #245: 'HAS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HAS2 MUTATED 0 4 3 0 2
HAS2 WILD-TYPE 59 71 71 119 36

Figure S856.  Get High-res Image Gene #245: 'HAS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HAS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S2583.  Gene #245: 'HAS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HAS2 MUTATED 0 4 1 2 1
HAS2 WILD-TYPE 51 72 60 69 94
'HAS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S2584.  Gene #245: 'HAS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HAS2 MUTATED 2 0 1 1 2 0 0 2 0
HAS2 WILD-TYPE 67 48 38 15 51 20 21 36 50
'MKL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.25

Table S2585.  Gene #246: 'MKL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MKL2 MUTATED 0 2 8
MKL2 WILD-TYPE 42 171 139
'MKL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S2586.  Gene #246: 'MKL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MKL2 MUTATED 3 1 5
MKL2 WILD-TYPE 59 72 70
'MKL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.53

Table S2587.  Gene #246: 'MKL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MKL2 MUTATED 3 1 3
MKL2 WILD-TYPE 67 119 97
'MKL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S2588.  Gene #246: 'MKL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MKL2 MUTATED 1 0 0 1 1 3 1 0 0
MKL2 WILD-TYPE 40 26 30 28 38 66 19 14 22
'MKL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0902 (Fisher's exact test), Q value = 0.33

Table S2589.  Gene #246: 'MKL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MKL2 MUTATED 2 2 5 1
MKL2 WILD-TYPE 98 70 67 120
'MKL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00127 (Fisher's exact test), Q value = 0.029

Table S2590.  Gene #246: 'MKL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MKL2 MUTATED 0 2 7 0 1
MKL2 WILD-TYPE 59 73 67 119 37

Figure S857.  Get High-res Image Gene #246: 'MKL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MKL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00756 (Fisher's exact test), Q value = 0.081

Table S2591.  Gene #246: 'MKL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MKL2 MUTATED 0 7 1 0 2
MKL2 WILD-TYPE 51 69 60 71 93

Figure S858.  Get High-res Image Gene #246: 'MKL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MKL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S2592.  Gene #246: 'MKL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MKL2 MUTATED 2 3 0 1 2 1 0 1 0
MKL2 WILD-TYPE 67 45 39 15 51 19 21 37 50
'MKL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S2593.  Gene #246: 'MKL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MKL2 MUTATED 0 1 2 0 2 0
MKL2 WILD-TYPE 13 15 12 11 9 9
'MKL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0276 (Fisher's exact test), Q value = 0.17

Table S2594.  Gene #246: 'MKL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MKL2 MUTATED 0 0 0 0 3 0 2 0 0
MKL2 WILD-TYPE 11 7 7 9 5 7 9 9 5

Figure S859.  Get High-res Image Gene #246: 'MKL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PCSK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S2595.  Gene #247: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PCSK1 MUTATED 2 0 0 1 0
PCSK1 WILD-TYPE 30 18 46 26 23
'PCSK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S2596.  Gene #247: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PCSK1 MUTATED 2 1 0
PCSK1 WILD-TYPE 41 66 36
'PCSK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S2597.  Gene #247: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PCSK1 MUTATED 2 4 10
PCSK1 WILD-TYPE 40 169 137
'PCSK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00617 (Fisher's exact test), Q value = 0.074

Table S2598.  Gene #247: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PCSK1 MUTATED 7 0 6
PCSK1 WILD-TYPE 55 73 69

Figure S860.  Get High-res Image Gene #247: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PCSK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S2599.  Gene #247: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PCSK1 MUTATED 0 6 4
PCSK1 WILD-TYPE 70 114 96
'PCSK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.98

Table S2600.  Gene #247: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PCSK1 MUTATED 1 2 1 2 0 2 1 0 1
PCSK1 WILD-TYPE 40 24 29 27 39 67 19 14 21
'PCSK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0944 (Fisher's exact test), Q value = 0.34

Table S2601.  Gene #247: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PCSK1 MUTATED 2 6 5 3
PCSK1 WILD-TYPE 98 66 67 118
'PCSK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S2602.  Gene #247: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PCSK1 MUTATED 4 2 6 2 2
PCSK1 WILD-TYPE 55 73 68 117 36
'PCSK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.27

Table S2603.  Gene #247: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PCSK1 MUTATED 1 7 3 0 5
PCSK1 WILD-TYPE 50 69 58 71 90
'PCSK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.55

Table S2604.  Gene #247: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PCSK1 MUTATED 4 4 0 2 1 1 0 3 1
PCSK1 WILD-TYPE 65 44 39 14 52 19 21 35 49
'PCSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S2605.  Gene #247: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PCSK1 MUTATED 0 1 3 1 1 0
PCSK1 WILD-TYPE 13 15 11 10 10 9
'PCSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S2606.  Gene #247: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PCSK1 MUTATED 1 0 0 1 2 0 2 0 0
PCSK1 WILD-TYPE 10 7 7 8 6 7 9 9 5
'TIAL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S2607.  Gene #248: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TIAL1 MUTATED 2 0 0 1 0
TIAL1 WILD-TYPE 30 18 46 26 23
'TIAL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0385 (Fisher's exact test), Q value = 0.21

Table S2608.  Gene #248: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TIAL1 MUTATED 3 0 0
TIAL1 WILD-TYPE 40 67 36

Figure S861.  Get High-res Image Gene #248: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TIAL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00187 (Fisher's exact test), Q value = 0.036

Table S2609.  Gene #248: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TIAL1 MUTATED 0 1 11
TIAL1 WILD-TYPE 42 172 136

Figure S862.  Get High-res Image Gene #248: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TIAL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S2610.  Gene #248: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TIAL1 MUTATED 3 1 5
TIAL1 WILD-TYPE 59 72 70
'TIAL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S2611.  Gene #248: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TIAL1 MUTATED 1 6 4
TIAL1 WILD-TYPE 69 114 96
'TIAL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S2612.  Gene #248: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TIAL1 MUTATED 1 1 0 2 2 4 1 0 0
TIAL1 WILD-TYPE 40 25 30 27 37 65 19 14 22
'TIAL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0768 (Fisher's exact test), Q value = 0.3

Table S2613.  Gene #248: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TIAL1 MUTATED 1 6 2 3
TIAL1 WILD-TYPE 99 66 70 118
'TIAL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0048

Table S2614.  Gene #248: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TIAL1 MUTATED 1 0 8 0 3
TIAL1 WILD-TYPE 58 75 66 119 35

Figure S863.  Get High-res Image Gene #248: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TIAL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 0.33

Table S2615.  Gene #248: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TIAL1 MUTATED 2 6 1 0 3
TIAL1 WILD-TYPE 49 70 60 71 92
'TIAL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.21

Table S2616.  Gene #248: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TIAL1 MUTATED 2 2 0 3 2 0 0 3 0
TIAL1 WILD-TYPE 67 46 39 13 51 20 21 35 50

Figure S864.  Get High-res Image Gene #248: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NBEA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.98

Table S2617.  Gene #249: 'NBEA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NBEA MUTATED 3 0 3 3 1
NBEA WILD-TYPE 29 18 43 24 22
'NBEA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S2618.  Gene #249: 'NBEA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NBEA MUTATED 4 3 3
NBEA WILD-TYPE 39 64 33
'NBEA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S2619.  Gene #249: 'NBEA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NBEA MUTATED 3 15 28
NBEA WILD-TYPE 39 158 119

Figure S865.  Get High-res Image Gene #249: 'NBEA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NBEA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S2620.  Gene #249: 'NBEA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NBEA MUTATED 12 8 16
NBEA WILD-TYPE 50 65 59
'NBEA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S2621.  Gene #249: 'NBEA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NBEA MUTATED 6 15 19
NBEA WILD-TYPE 64 105 81
'NBEA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.78

Table S2622.  Gene #249: 'NBEA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NBEA MUTATED 6 5 2 6 5 11 3 2 0
NBEA WILD-TYPE 35 21 28 23 34 58 17 12 22
'NBEA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00548 (Fisher's exact test), Q value = 0.07

Table S2623.  Gene #249: 'NBEA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NBEA MUTATED 7 13 16 10
NBEA WILD-TYPE 93 59 56 111

Figure S866.  Get High-res Image Gene #249: 'NBEA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NBEA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0241 (Fisher's exact test), Q value = 0.16

Table S2624.  Gene #249: 'NBEA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NBEA MUTATED 8 11 16 7 4
NBEA WILD-TYPE 51 64 58 112 34

Figure S867.  Get High-res Image Gene #249: 'NBEA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NBEA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S2625.  Gene #249: 'NBEA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NBEA MUTATED 10 12 8 7 7
NBEA WILD-TYPE 41 64 53 64 88
'NBEA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S2626.  Gene #249: 'NBEA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NBEA MUTATED 11 11 2 2 6 4 2 2 4
NBEA WILD-TYPE 58 37 37 14 47 16 19 36 46
'NBEA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S2627.  Gene #249: 'NBEA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NBEA MUTATED 0 2 2 1 2 1
NBEA WILD-TYPE 13 14 12 10 9 8
'NBEA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S2628.  Gene #249: 'NBEA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NBEA MUTATED 2 0 1 1 2 0 2 0 0
NBEA WILD-TYPE 9 7 6 8 6 7 9 9 5
'F2RL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.28

Table S2629.  Gene #250: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
F2RL1 MUTATED 3 2 2
F2RL1 WILD-TYPE 39 171 145
'F2RL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2630.  Gene #250: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
F2RL1 MUTATED 2 2 3
F2RL1 WILD-TYPE 60 71 72
'F2RL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 0.035

Table S2631.  Gene #250: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
F2RL1 MUTATED 0 0 6
F2RL1 WILD-TYPE 70 120 94

Figure S868.  Get High-res Image Gene #250: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'F2RL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S2632.  Gene #250: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
F2RL1 MUTATED 1 0 0 0 0 5 0 0 0
F2RL1 WILD-TYPE 40 26 30 29 39 64 20 14 22
'F2RL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0944 (Fisher's exact test), Q value = 0.34

Table S2633.  Gene #250: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
F2RL1 MUTATED 3 3 1 0
F2RL1 WILD-TYPE 97 69 71 121
'F2RL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S2634.  Gene #250: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
F2RL1 MUTATED 2 3 2 0 0
F2RL1 WILD-TYPE 57 72 72 119 38
'F2RL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S2635.  Gene #250: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
F2RL1 MUTATED 1 0 2 2 2
F2RL1 WILD-TYPE 50 76 59 69 93
'F2RL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S2636.  Gene #250: 'F2RL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
F2RL1 MUTATED 3 1 1 0 0 0 0 1 1
F2RL1 WILD-TYPE 66 47 38 16 53 20 21 37 49
'ALG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S2637.  Gene #251: 'ALG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ALG2 MUTATED 1 0 0 2 0
ALG2 WILD-TYPE 31 18 46 25 23
'ALG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S2638.  Gene #251: 'ALG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ALG2 MUTATED 2 1 0
ALG2 WILD-TYPE 41 66 36
'ALG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S2639.  Gene #251: 'ALG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ALG2 MUTATED 0 2 6
ALG2 WILD-TYPE 42 171 141
'ALG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S2640.  Gene #251: 'ALG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ALG2 MUTATED 2 1 2
ALG2 WILD-TYPE 60 72 73
'ALG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.78

Table S2641.  Gene #251: 'ALG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ALG2 MUTATED 0 3 3
ALG2 WILD-TYPE 70 117 97
'ALG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S2642.  Gene #251: 'ALG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ALG2 MUTATED 0 0 1 0 0 3 1 1 0
ALG2 WILD-TYPE 41 26 29 29 39 66 19 13 22
'ALG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2643.  Gene #251: 'ALG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ALG2 MUTATED 2 2 1 3
ALG2 WILD-TYPE 98 70 71 118
'ALG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S2644.  Gene #251: 'ALG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ALG2 MUTATED 2 1 2 1 2
ALG2 WILD-TYPE 57 74 72 118 36
'ALG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.88

Table S2645.  Gene #251: 'ALG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ALG2 MUTATED 1 3 1 0 2
ALG2 WILD-TYPE 50 73 60 71 93
'ALG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00601 (Fisher's exact test), Q value = 0.073

Table S2646.  Gene #251: 'ALG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ALG2 MUTATED 1 2 0 1 0 3 0 0 0
ALG2 WILD-TYPE 68 46 39 15 53 17 21 38 50

Figure S869.  Get High-res Image Gene #251: 'ALG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'STBD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S2647.  Gene #252: 'STBD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STBD1 MUTATED 0 4 2
STBD1 WILD-TYPE 42 169 145
'STBD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.45

Table S2648.  Gene #252: 'STBD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STBD1 MUTATED 3 2 0
STBD1 WILD-TYPE 59 71 75
'STBD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2649.  Gene #252: 'STBD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STBD1 MUTATED 1 2 2
STBD1 WILD-TYPE 69 118 98
'STBD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S2650.  Gene #252: 'STBD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STBD1 MUTATED 0 0 0 1 1 2 0 0 1
STBD1 WILD-TYPE 41 26 30 28 38 67 20 14 21
'STBD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 0.97

Table S2651.  Gene #252: 'STBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STBD1 MUTATED 3 1 1 1
STBD1 WILD-TYPE 97 71 71 120
'STBD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S2652.  Gene #252: 'STBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STBD1 MUTATED 0 4 1 1 0
STBD1 WILD-TYPE 59 71 73 118 38
'STBD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0946 (Fisher's exact test), Q value = 0.34

Table S2653.  Gene #252: 'STBD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STBD1 MUTATED 2 3 0 1 0
STBD1 WILD-TYPE 49 73 61 70 95
'STBD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.9

Table S2654.  Gene #252: 'STBD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STBD1 MUTATED 2 0 1 0 2 1 0 0 0
STBD1 WILD-TYPE 67 48 38 16 51 19 21 38 50
'C12ORF40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S2655.  Gene #253: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C12ORF40 MUTATED 1 8 12
C12ORF40 WILD-TYPE 41 165 135
'C12ORF40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S2656.  Gene #253: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C12ORF40 MUTATED 4 6 9
C12ORF40 WILD-TYPE 58 67 66
'C12ORF40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.97

Table S2657.  Gene #253: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C12ORF40 MUTATED 4 6 8
C12ORF40 WILD-TYPE 66 114 92
'C12ORF40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.92

Table S2658.  Gene #253: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C12ORF40 MUTATED 4 1 0 2 2 7 1 1 0
C12ORF40 WILD-TYPE 37 25 30 27 37 62 19 13 22
'C12ORF40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00139 (Fisher's exact test), Q value = 0.031

Table S2659.  Gene #253: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C12ORF40 MUTATED 5 10 5 1
C12ORF40 WILD-TYPE 95 62 67 120

Figure S870.  Get High-res Image Gene #253: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C12ORF40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00109 (Fisher's exact test), Q value = 0.026

Table S2660.  Gene #253: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C12ORF40 MUTATED 4 4 11 1 1
C12ORF40 WILD-TYPE 55 71 63 118 37

Figure S871.  Get High-res Image Gene #253: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C12ORF40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S2661.  Gene #253: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C12ORF40 MUTATED 3 13 2 2 0
C12ORF40 WILD-TYPE 48 63 59 69 95

Figure S872.  Get High-res Image Gene #253: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C12ORF40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S2662.  Gene #253: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C12ORF40 MUTATED 7 4 0 6 2 1 0 0 0
C12ORF40 WILD-TYPE 62 44 39 10 51 19 21 38 50

Figure S873.  Get High-res Image Gene #253: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C12ORF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S2663.  Gene #253: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C12ORF40 MUTATED 0 1 0 2 2 0
C12ORF40 WILD-TYPE 13 15 14 9 9 9
'C12ORF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.93

Table S2664.  Gene #253: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C12ORF40 MUTATED 1 0 1 2 0 0 0 1 0
C12ORF40 WILD-TYPE 10 7 6 7 8 7 11 8 5
'GNAS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S2665.  Gene #254: 'GNAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GNAS MUTATED 2 0 3 3 0
GNAS WILD-TYPE 30 18 43 24 23
'GNAS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S2666.  Gene #254: 'GNAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GNAS MUTATED 2 5 1
GNAS WILD-TYPE 41 62 35
'GNAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S2667.  Gene #254: 'GNAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GNAS MUTATED 3 11 16
GNAS WILD-TYPE 39 162 131
'GNAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S2668.  Gene #254: 'GNAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GNAS MUTATED 7 5 12
GNAS WILD-TYPE 55 68 63
'GNAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S2669.  Gene #254: 'GNAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GNAS MUTATED 4 10 13
GNAS WILD-TYPE 66 110 87
'GNAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S2670.  Gene #254: 'GNAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GNAS MUTATED 3 1 3 4 1 11 3 1 0
GNAS WILD-TYPE 38 25 27 25 38 58 17 13 22
'GNAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S2671.  Gene #254: 'GNAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GNAS MUTATED 6 14 5 7
GNAS WILD-TYPE 94 58 67 114

Figure S874.  Get High-res Image Gene #254: 'GNAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GNAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S2672.  Gene #254: 'GNAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GNAS MUTATED 2 4 18 5 3
GNAS WILD-TYPE 57 71 56 114 35

Figure S875.  Get High-res Image Gene #254: 'GNAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GNAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 0.16

Table S2673.  Gene #254: 'GNAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GNAS MUTATED 4 14 4 2 8
GNAS WILD-TYPE 47 62 57 69 87

Figure S876.  Get High-res Image Gene #254: 'GNAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GNAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00813 (Fisher's exact test), Q value = 0.085

Table S2674.  Gene #254: 'GNAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GNAS MUTATED 8 5 2 6 3 4 0 2 2
GNAS WILD-TYPE 61 43 37 10 50 16 21 36 48

Figure S877.  Get High-res Image Gene #254: 'GNAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GNAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S2675.  Gene #254: 'GNAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GNAS MUTATED 2 3 1 0 4 0
GNAS WILD-TYPE 11 13 13 11 7 9
'GNAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S2676.  Gene #254: 'GNAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GNAS MUTATED 2 0 1 4 1 0 2 0 0
GNAS WILD-TYPE 9 7 6 5 7 7 9 9 5
'RBM7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.53

Table S2677.  Gene #255: 'RBM7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RBM7 MUTATED 0 3 7
RBM7 WILD-TYPE 42 170 140
'RBM7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2678.  Gene #255: 'RBM7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RBM7 MUTATED 2 3 3
RBM7 WILD-TYPE 60 70 72
'RBM7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 0.28

Table S2679.  Gene #255: 'RBM7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RBM7 MUTATED 0 3 6
RBM7 WILD-TYPE 70 117 94
'RBM7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S2680.  Gene #255: 'RBM7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RBM7 MUTATED 2 0 2 0 1 3 1 0 0
RBM7 WILD-TYPE 39 26 28 29 38 66 19 14 22
'RBM7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S2681.  Gene #255: 'RBM7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RBM7 MUTATED 2 4 2 2
RBM7 WILD-TYPE 98 68 70 119
'RBM7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S2682.  Gene #255: 'RBM7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RBM7 MUTATED 4 2 2 1 1
RBM7 WILD-TYPE 55 73 72 118 37
'RBM7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S2683.  Gene #255: 'RBM7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RBM7 MUTATED 1 2 3 1 2
RBM7 WILD-TYPE 50 74 58 70 93
'RBM7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.92

Table S2684.  Gene #255: 'RBM7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RBM7 MUTATED 2 3 0 1 2 0 0 0 1
RBM7 WILD-TYPE 67 45 39 15 51 20 21 38 49
'RBM7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S2685.  Gene #255: 'RBM7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RBM7 MUTATED 1 0 0 2 0 0
RBM7 WILD-TYPE 12 16 14 9 11 9
'RBM7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S2686.  Gene #255: 'RBM7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RBM7 MUTATED 0 0 2 0 0 0 1 0 0
RBM7 WILD-TYPE 11 7 5 9 8 7 10 9 5
'RUNX1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S2687.  Gene #256: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RUNX1 MUTATED 2 0 0 2 0
RUNX1 WILD-TYPE 30 18 46 25 23
'RUNX1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S2688.  Gene #256: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RUNX1 MUTATED 2 2 0
RUNX1 WILD-TYPE 41 65 36
'RUNX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 0.31

Table S2689.  Gene #256: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RUNX1 MUTATED 3 12 21
RUNX1 WILD-TYPE 39 161 126
'RUNX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.74

Table S2690.  Gene #256: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RUNX1 MUTATED 8 9 15
RUNX1 WILD-TYPE 54 64 60
'RUNX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 0.32

Table S2691.  Gene #256: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RUNX1 MUTATED 4 11 16
RUNX1 WILD-TYPE 66 109 84
'RUNX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S2692.  Gene #256: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RUNX1 MUTATED 2 3 2 2 2 13 5 1 1
RUNX1 WILD-TYPE 39 23 28 27 37 56 15 13 21
'RUNX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00144 (Fisher's exact test), Q value = 0.031

Table S2693.  Gene #256: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RUNX1 MUTATED 9 16 7 5
RUNX1 WILD-TYPE 91 56 65 116

Figure S878.  Get High-res Image Gene #256: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RUNX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00215 (Fisher's exact test), Q value = 0.039

Table S2694.  Gene #256: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RUNX1 MUTATED 5 11 15 5 1
RUNX1 WILD-TYPE 54 64 59 114 37

Figure S879.  Get High-res Image Gene #256: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RUNX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0079

Table S2695.  Gene #256: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RUNX1 MUTATED 6 19 5 2 5
RUNX1 WILD-TYPE 45 57 56 69 90

Figure S880.  Get High-res Image Gene #256: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RUNX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00133 (Fisher's exact test), Q value = 0.03

Table S2696.  Gene #256: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RUNX1 MUTATED 9 6 1 5 3 7 2 1 3
RUNX1 WILD-TYPE 60 42 38 11 50 13 19 37 47

Figure S881.  Get High-res Image Gene #256: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RUNX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S2697.  Gene #256: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RUNX1 MUTATED 2 2 1 0 3 1
RUNX1 WILD-TYPE 11 14 13 11 8 8
'RUNX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S2698.  Gene #256: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RUNX1 MUTATED 2 1 1 2 0 1 1 1 0
RUNX1 WILD-TYPE 9 6 6 7 8 6 10 8 5
'FAM133B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.19

Table S2699.  Gene #257: 'FAM133B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM133B MUTATED 0 0 5
FAM133B WILD-TYPE 42 173 142

Figure S882.  Get High-res Image Gene #257: 'FAM133B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM133B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S2700.  Gene #257: 'FAM133B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM133B MUTATED 3 0 2
FAM133B WILD-TYPE 59 73 73
'FAM133B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2701.  Gene #257: 'FAM133B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM133B MUTATED 1 2 2
FAM133B WILD-TYPE 69 118 98
'FAM133B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S2702.  Gene #257: 'FAM133B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM133B MUTATED 1 0 0 0 1 2 0 1 0
FAM133B WILD-TYPE 40 26 30 29 38 67 20 13 22
'FAM133B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S2703.  Gene #257: 'FAM133B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM133B MUTATED 0 1 3 1
FAM133B WILD-TYPE 100 71 69 120
'FAM133B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0581 (Fisher's exact test), Q value = 0.26

Table S2704.  Gene #257: 'FAM133B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM133B MUTATED 1 0 3 0 1
FAM133B WILD-TYPE 58 75 71 119 37
'FAM133B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S2705.  Gene #257: 'FAM133B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM133B MUTATED 0 3 1 0 1
FAM133B WILD-TYPE 51 73 60 71 94
'FAM133B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S2706.  Gene #257: 'FAM133B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM133B MUTATED 1 2 0 1 0 0 0 1 0
FAM133B WILD-TYPE 68 46 39 15 53 20 21 37 50
'FAM133B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S2707.  Gene #257: 'FAM133B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FAM133B MUTATED 0 1 1 0 2 0
FAM133B WILD-TYPE 13 15 13 11 9 9
'FAM133B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S2708.  Gene #257: 'FAM133B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FAM133B MUTATED 0 1 0 1 0 0 2 0 0
FAM133B WILD-TYPE 11 6 7 8 8 7 9 9 5
'CARD11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S2709.  Gene #258: 'CARD11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CARD11 MUTATED 4 0 1 1 1
CARD11 WILD-TYPE 28 18 45 26 22
'CARD11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S2710.  Gene #258: 'CARD11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CARD11 MUTATED 4 2 1
CARD11 WILD-TYPE 39 65 35
'CARD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S2711.  Gene #258: 'CARD11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CARD11 MUTATED 5 16 19
CARD11 WILD-TYPE 37 157 128
'CARD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.97

Table S2712.  Gene #258: 'CARD11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CARD11 MUTATED 12 10 12
CARD11 WILD-TYPE 50 63 63
'CARD11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.74

Table S2713.  Gene #258: 'CARD11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CARD11 MUTATED 5 16 13
CARD11 WILD-TYPE 65 104 87
'CARD11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S2714.  Gene #258: 'CARD11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CARD11 MUTATED 8 3 2 3 3 8 2 2 3
CARD11 WILD-TYPE 33 23 28 26 36 61 18 12 19
'CARD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0554 (Fisher's exact test), Q value = 0.25

Table S2715.  Gene #258: 'CARD11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CARD11 MUTATED 16 11 7 7
CARD11 WILD-TYPE 84 61 65 114
'CARD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00415 (Fisher's exact test), Q value = 0.058

Table S2716.  Gene #258: 'CARD11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CARD11 MUTATED 7 13 13 4 4
CARD11 WILD-TYPE 52 62 61 115 34

Figure S883.  Get High-res Image Gene #258: 'CARD11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CARD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S2717.  Gene #258: 'CARD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CARD11 MUTATED 8 12 9 4 7
CARD11 WILD-TYPE 43 64 52 67 88
'CARD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S2718.  Gene #258: 'CARD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CARD11 MUTATED 10 7 3 1 7 3 1 5 3
CARD11 WILD-TYPE 59 41 36 15 46 17 20 33 47
'CARD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S2719.  Gene #258: 'CARD11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CARD11 MUTATED 1 1 2 0 1 1
CARD11 WILD-TYPE 12 15 12 11 10 8
'CARD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S2720.  Gene #258: 'CARD11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CARD11 MUTATED 0 1 0 1 1 1 1 1 0
CARD11 WILD-TYPE 11 6 7 8 7 6 10 8 5
'IFT57 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S2721.  Gene #259: 'IFT57 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IFT57 MUTATED 1 2 7
IFT57 WILD-TYPE 41 171 140
'IFT57 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S2722.  Gene #259: 'IFT57 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IFT57 MUTATED 3 2 4
IFT57 WILD-TYPE 59 71 71
'IFT57 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.61

Table S2723.  Gene #259: 'IFT57 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IFT57 MUTATED 1 3 6
IFT57 WILD-TYPE 69 117 94
'IFT57 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.52

Table S2724.  Gene #259: 'IFT57 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IFT57 MUTATED 1 0 0 3 0 4 1 1 0
IFT57 WILD-TYPE 40 26 30 26 39 65 19 13 22
'IFT57 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.17

Table S2725.  Gene #259: 'IFT57 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IFT57 MUTATED 2 6 1 1
IFT57 WILD-TYPE 98 66 71 120

Figure S884.  Get High-res Image Gene #259: 'IFT57 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IFT57 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S2726.  Gene #259: 'IFT57 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IFT57 MUTATED 1 2 6 0 1
IFT57 WILD-TYPE 58 73 68 119 37

Figure S885.  Get High-res Image Gene #259: 'IFT57 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IFT57 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 0.18

Table S2727.  Gene #259: 'IFT57 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IFT57 MUTATED 1 6 1 0 1
IFT57 WILD-TYPE 50 70 60 71 94

Figure S886.  Get High-res Image Gene #259: 'IFT57 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IFT57 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0488 (Fisher's exact test), Q value = 0.24

Table S2728.  Gene #259: 'IFT57 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IFT57 MUTATED 1 2 0 3 2 0 0 0 1
IFT57 WILD-TYPE 68 46 39 13 51 20 21 38 49

Figure S887.  Get High-res Image Gene #259: 'IFT57 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TNFRSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S2729.  Gene #260: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TNFRSF9 MUTATED 1 2 6
TNFRSF9 WILD-TYPE 41 171 141
'TNFRSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2730.  Gene #260: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TNFRSF9 MUTATED 2 2 3
TNFRSF9 WILD-TYPE 60 71 72
'TNFRSF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S2731.  Gene #260: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TNFRSF9 MUTATED 5 2 2
TNFRSF9 WILD-TYPE 65 118 98
'TNFRSF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S2732.  Gene #260: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TNFRSF9 MUTATED 3 2 0 2 1 1 0 0 0
TNFRSF9 WILD-TYPE 38 24 30 27 38 68 20 14 22
'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S2733.  Gene #260: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TNFRSF9 MUTATED 2 2 3 2
TNFRSF9 WILD-TYPE 98 70 69 119
'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S2734.  Gene #260: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TNFRSF9 MUTATED 2 2 3 1 1
TNFRSF9 WILD-TYPE 57 73 71 118 37
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S2735.  Gene #260: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TNFRSF9 MUTATED 2 2 2 1 2
TNFRSF9 WILD-TYPE 49 74 59 70 93
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S2736.  Gene #260: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TNFRSF9 MUTATED 1 2 1 1 1 0 1 1 1
TNFRSF9 WILD-TYPE 68 46 38 15 52 20 20 37 49
'WNT16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S2737.  Gene #261: 'WNT16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WNT16 MUTATED 0 2 6
WNT16 WILD-TYPE 42 171 141
'WNT16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.62

Table S2738.  Gene #261: 'WNT16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WNT16 MUTATED 4 1 2
WNT16 WILD-TYPE 58 72 73
'WNT16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S2739.  Gene #261: 'WNT16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WNT16 MUTATED 1 2 3
WNT16 WILD-TYPE 69 118 97
'WNT16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S2740.  Gene #261: 'WNT16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WNT16 MUTATED 0 0 1 1 1 3 0 0 0
WNT16 WILD-TYPE 41 26 29 28 38 66 20 14 22
'WNT16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.79

Table S2741.  Gene #261: 'WNT16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WNT16 MUTATED 2 3 2 1
WNT16 WILD-TYPE 98 69 70 120
'WNT16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S2742.  Gene #261: 'WNT16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WNT16 MUTATED 1 2 4 1 0
WNT16 WILD-TYPE 58 73 70 118 38
'WNT16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 0.95

Table S2743.  Gene #261: 'WNT16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WNT16 MUTATED 1 2 2 0 3
WNT16 WILD-TYPE 50 74 59 71 92
'WNT16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S2744.  Gene #261: 'WNT16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WNT16 MUTATED 1 2 0 1 0 2 0 1 1
WNT16 WILD-TYPE 68 46 39 15 53 18 21 37 49
'SLC9A10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S2745.  Gene #262: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC9A10 MUTATED 2 0 1 1 0
SLC9A10 WILD-TYPE 30 18 45 26 23
'SLC9A10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S2746.  Gene #262: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC9A10 MUTATED 2 2 0
SLC9A10 WILD-TYPE 41 65 36
'SLC9A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00483 (Fisher's exact test), Q value = 0.065

Table S2747.  Gene #262: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC9A10 MUTATED 1 3 14
SLC9A10 WILD-TYPE 41 170 133

Figure S888.  Get High-res Image Gene #262: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC9A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S2748.  Gene #262: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC9A10 MUTATED 7 2 5
SLC9A10 WILD-TYPE 55 71 70
'SLC9A10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.15

Table S2749.  Gene #262: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC9A10 MUTATED 2 4 12
SLC9A10 WILD-TYPE 68 116 88

Figure S889.  Get High-res Image Gene #262: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SLC9A10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S2750.  Gene #262: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC9A10 MUTATED 1 0 2 0 2 10 1 1 1
SLC9A10 WILD-TYPE 40 26 28 29 37 59 19 13 21
'SLC9A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S2751.  Gene #262: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC9A10 MUTATED 5 5 5 3
SLC9A10 WILD-TYPE 95 67 67 118
'SLC9A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S2752.  Gene #262: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC9A10 MUTATED 3 5 6 2 2
SLC9A10 WILD-TYPE 56 70 68 117 36
'SLC9A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S2753.  Gene #262: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC9A10 MUTATED 1 7 3 2 4
SLC9A10 WILD-TYPE 50 69 58 69 91
'SLC9A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.75

Table S2754.  Gene #262: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC9A10 MUTATED 2 5 2 2 3 1 0 1 1
SLC9A10 WILD-TYPE 67 43 37 14 50 19 21 37 49
'SLC9A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S2755.  Gene #262: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLC9A10 MUTATED 2 0 1 0 1 0
SLC9A10 WILD-TYPE 11 16 13 11 10 9
'SLC9A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S2756.  Gene #262: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLC9A10 MUTATED 0 0 0 1 0 1 1 1 0
SLC9A10 WILD-TYPE 11 7 7 8 8 6 10 8 5
'VAV2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S2757.  Gene #263: 'VAV2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
VAV2 MUTATED 1 5 11
VAV2 WILD-TYPE 41 168 136
'VAV2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 0.97

Table S2758.  Gene #263: 'VAV2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
VAV2 MUTATED 6 4 5
VAV2 WILD-TYPE 56 69 70
'VAV2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0832 (Fisher's exact test), Q value = 0.31

Table S2759.  Gene #263: 'VAV2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
VAV2 MUTATED 2 3 9
VAV2 WILD-TYPE 68 117 91
'VAV2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0536 (Fisher's exact test), Q value = 0.25

Table S2760.  Gene #263: 'VAV2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
VAV2 MUTATED 1 0 1 1 0 9 2 0 0
VAV2 WILD-TYPE 40 26 29 28 39 60 18 14 22
'VAV2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0463 (Fisher's exact test), Q value = 0.23

Table S2761.  Gene #263: 'VAV2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
VAV2 MUTATED 6 5 5 1
VAV2 WILD-TYPE 94 67 67 120

Figure S890.  Get High-res Image Gene #263: 'VAV2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'VAV2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0458 (Fisher's exact test), Q value = 0.23

Table S2762.  Gene #263: 'VAV2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
VAV2 MUTATED 3 6 6 1 1
VAV2 WILD-TYPE 56 69 68 118 37

Figure S891.  Get High-res Image Gene #263: 'VAV2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VAV2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00087 (Fisher's exact test), Q value = 0.023

Table S2763.  Gene #263: 'VAV2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
VAV2 MUTATED 2 11 0 2 2
VAV2 WILD-TYPE 49 65 61 69 93

Figure S892.  Get High-res Image Gene #263: 'VAV2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'VAV2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0947 (Fisher's exact test), Q value = 0.34

Table S2764.  Gene #263: 'VAV2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
VAV2 MUTATED 8 2 2 2 2 0 0 1 0
VAV2 WILD-TYPE 61 46 37 14 51 20 21 37 50
'VAV2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.96

Table S2765.  Gene #263: 'VAV2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
VAV2 MUTATED 1 0 2 1 1 0
VAV2 WILD-TYPE 12 16 12 10 10 9
'VAV2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 0.98

Table S2766.  Gene #263: 'VAV2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
VAV2 MUTATED 0 0 0 0 1 1 2 1 0
VAV2 WILD-TYPE 11 7 7 9 7 6 9 8 5
'HMG20A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S2767.  Gene #264: 'HMG20A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HMG20A MUTATED 1 0 2 1 0
HMG20A WILD-TYPE 31 18 44 26 23
'HMG20A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S2768.  Gene #264: 'HMG20A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HMG20A MUTATED 1 1 2
HMG20A WILD-TYPE 42 66 34
'HMG20A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S2769.  Gene #264: 'HMG20A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HMG20A MUTATED 2 3 8
HMG20A WILD-TYPE 40 170 139
'HMG20A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S2770.  Gene #264: 'HMG20A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HMG20A MUTATED 4 1 4
HMG20A WILD-TYPE 58 72 71
'HMG20A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S2771.  Gene #264: 'HMG20A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HMG20A MUTATED 3 3 6
HMG20A WILD-TYPE 67 117 94
'HMG20A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S2772.  Gene #264: 'HMG20A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HMG20A MUTATED 2 0 1 0 2 4 1 2 0
HMG20A WILD-TYPE 39 26 29 29 37 65 19 12 22
'HMG20A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S2773.  Gene #264: 'HMG20A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HMG20A MUTATED 1 5 2 5
HMG20A WILD-TYPE 99 67 70 116
'HMG20A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S2774.  Gene #264: 'HMG20A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HMG20A MUTATED 1 3 4 4 1
HMG20A WILD-TYPE 58 72 70 115 37
'HMG20A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2775.  Gene #264: 'HMG20A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HMG20A MUTATED 2 3 2 2 4
HMG20A WILD-TYPE 49 73 59 69 91
'HMG20A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S2776.  Gene #264: 'HMG20A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HMG20A MUTATED 3 2 0 1 2 2 0 0 3
HMG20A WILD-TYPE 66 46 39 15 51 18 21 38 47
'HMG20A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S2777.  Gene #264: 'HMG20A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HMG20A MUTATED 1 0 1 0 1 0
HMG20A WILD-TYPE 12 16 13 11 10 9
'HMG20A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S2778.  Gene #264: 'HMG20A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HMG20A MUTATED 0 0 0 0 1 0 1 1 0
HMG20A WILD-TYPE 11 7 7 9 7 7 10 8 5
'ETF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S2779.  Gene #265: 'ETF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ETF1 MUTATED 2 2 6
ETF1 WILD-TYPE 40 171 141
'ETF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0764 (Fisher's exact test), Q value = 0.3

Table S2780.  Gene #265: 'ETF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ETF1 MUTATED 4 0 4
ETF1 WILD-TYPE 58 73 71
'ETF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S2781.  Gene #265: 'ETF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ETF1 MUTATED 1 3 4
ETF1 WILD-TYPE 69 117 96
'ETF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S2782.  Gene #265: 'ETF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ETF1 MUTATED 1 1 0 1 0 3 0 1 1
ETF1 WILD-TYPE 40 25 30 28 39 66 20 13 21
'ETF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.89

Table S2783.  Gene #265: 'ETF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ETF1 MUTATED 2 3 3 2
ETF1 WILD-TYPE 98 69 69 119
'ETF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S2784.  Gene #265: 'ETF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ETF1 MUTATED 4 1 3 1 1
ETF1 WILD-TYPE 55 74 71 118 37
'ETF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S2785.  Gene #265: 'ETF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ETF1 MUTATED 1 3 4 0 2
ETF1 WILD-TYPE 50 73 57 71 93
'ETF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.93

Table S2786.  Gene #265: 'ETF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ETF1 MUTATED 2 3 1 1 1 0 1 1 0
ETF1 WILD-TYPE 67 45 38 15 52 20 20 37 50
'CBL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2787.  Gene #266: 'CBL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CBL MUTATED 1 0 1 1 0
CBL WILD-TYPE 31 18 45 26 23
'CBL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2788.  Gene #266: 'CBL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CBL MUTATED 1 1 1
CBL WILD-TYPE 42 66 35
'CBL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 0.93

Table S2789.  Gene #266: 'CBL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CBL MUTATED 2 17 15
CBL WILD-TYPE 40 156 132
'CBL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.54

Table S2790.  Gene #266: 'CBL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CBL MUTATED 11 13 7
CBL WILD-TYPE 51 60 68
'CBL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S2791.  Gene #266: 'CBL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CBL MUTATED 4 15 11
CBL WILD-TYPE 66 105 89
'CBL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00443 (Fisher's exact test), Q value = 0.061

Table S2792.  Gene #266: 'CBL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CBL MUTATED 4 1 4 1 1 10 0 6 3
CBL WILD-TYPE 37 25 26 28 38 59 20 8 19

Figure S893.  Get High-res Image Gene #266: 'CBL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CBL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.27

Table S2793.  Gene #266: 'CBL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CBL MUTATED 12 10 7 5
CBL WILD-TYPE 88 62 65 116
'CBL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00606 (Fisher's exact test), Q value = 0.073

Table S2794.  Gene #266: 'CBL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CBL MUTATED 10 10 9 4 1
CBL WILD-TYPE 49 65 65 115 37

Figure S894.  Get High-res Image Gene #266: 'CBL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CBL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.15

Table S2795.  Gene #266: 'CBL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CBL MUTATED 9 12 4 5 4
CBL WILD-TYPE 42 64 57 66 91

Figure S895.  Get High-res Image Gene #266: 'CBL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CBL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00075 (Fisher's exact test), Q value = 0.021

Table S2796.  Gene #266: 'CBL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CBL MUTATED 9 8 1 2 4 7 0 0 3
CBL WILD-TYPE 60 40 38 14 49 13 21 38 47

Figure S896.  Get High-res Image Gene #266: 'CBL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CBL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.99

Table S2797.  Gene #266: 'CBL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CBL MUTATED 2 4 1 1 3 1
CBL WILD-TYPE 11 12 13 10 8 8
'CBL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S2798.  Gene #266: 'CBL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CBL MUTATED 1 1 2 1 0 0 4 3 0
CBL WILD-TYPE 10 6 5 8 8 7 7 6 5
'PRB4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S2799.  Gene #267: 'PRB4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PRB4 MUTATED 0 1 0 1 1
PRB4 WILD-TYPE 32 17 46 26 22
'PRB4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.55

Table S2800.  Gene #267: 'PRB4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PRB4 MUTATED 0 1 2
PRB4 WILD-TYPE 43 66 34
'PRB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.96

Table S2801.  Gene #267: 'PRB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRB4 MUTATED 0 6 4
PRB4 WILD-TYPE 42 167 143
'PRB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S2802.  Gene #267: 'PRB4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRB4 MUTATED 3 3 1
PRB4 WILD-TYPE 59 70 74
'PRB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.76

Table S2803.  Gene #267: 'PRB4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRB4 MUTATED 2 2 5
PRB4 WILD-TYPE 68 118 95
'PRB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S2804.  Gene #267: 'PRB4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRB4 MUTATED 5 0 1 1 0 1 0 0 1
PRB4 WILD-TYPE 36 26 29 28 39 68 20 14 21
'PRB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0821 (Fisher's exact test), Q value = 0.31

Table S2805.  Gene #267: 'PRB4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRB4 MUTATED 2 0 5 3
PRB4 WILD-TYPE 98 72 67 118
'PRB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0521 (Fisher's exact test), Q value = 0.24

Table S2806.  Gene #267: 'PRB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRB4 MUTATED 5 2 0 3 0
PRB4 WILD-TYPE 54 73 74 116 38
'PRB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S2807.  Gene #267: 'PRB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRB4 MUTATED 2 1 3 3 1
PRB4 WILD-TYPE 49 75 58 68 94
'PRB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S2808.  Gene #267: 'PRB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRB4 MUTATED 2 3 2 0 1 1 0 0 1
PRB4 WILD-TYPE 67 45 37 16 52 19 21 38 49
'PRB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2809.  Gene #267: 'PRB4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PRB4 MUTATED 1 1 1 0 0 0
PRB4 WILD-TYPE 12 15 13 11 11 9
'PRB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S2810.  Gene #267: 'PRB4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PRB4 MUTATED 0 1 0 0 1 0 0 1 0
PRB4 WILD-TYPE 11 6 7 9 7 7 11 8 5
'SOX7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0991 (Fisher's exact test), Q value = 0.34

Table S2811.  Gene #268: 'SOX7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SOX7 MUTATED 3 0 0 1 0
SOX7 WILD-TYPE 29 18 46 26 23
'SOX7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S2812.  Gene #268: 'SOX7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SOX7 MUTATED 3 1 0
SOX7 WILD-TYPE 40 66 36
'SOX7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.16

Table S2813.  Gene #268: 'SOX7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SOX7 MUTATED 1 1 8
SOX7 WILD-TYPE 41 172 139

Figure S897.  Get High-res Image Gene #268: 'SOX7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SOX7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.73

Table S2814.  Gene #268: 'SOX7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SOX7 MUTATED 2 1 4
SOX7 WILD-TYPE 60 72 71
'SOX7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 0.25

Table S2815.  Gene #268: 'SOX7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SOX7 MUTATED 0 4 7
SOX7 WILD-TYPE 70 116 93
'SOX7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S2816.  Gene #268: 'SOX7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SOX7 MUTATED 1 0 1 2 1 4 2 0 0
SOX7 WILD-TYPE 40 26 29 27 38 65 18 14 22
'SOX7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S2817.  Gene #268: 'SOX7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SOX7 MUTATED 1 5 1 4
SOX7 WILD-TYPE 99 67 71 117
'SOX7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S2818.  Gene #268: 'SOX7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SOX7 MUTATED 1 3 3 2 2
SOX7 WILD-TYPE 58 72 71 117 36
'SOX7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.63

Table S2819.  Gene #268: 'SOX7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SOX7 MUTATED 0 4 1 1 5
SOX7 WILD-TYPE 51 72 60 70 90
'SOX7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S2820.  Gene #268: 'SOX7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SOX7 MUTATED 1 1 0 2 2 1 1 2 1
SOX7 WILD-TYPE 68 47 39 14 51 19 20 36 49
'ARHGAP5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 0.23

Table S2821.  Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ARHGAP5 MUTATED 3 1 0 0 0
ARHGAP5 WILD-TYPE 29 17 46 27 23

Figure S898.  Get High-res Image Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S2822.  Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ARHGAP5 MUTATED 3 1 0
ARHGAP5 WILD-TYPE 40 66 36
'ARHGAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.012

Table S2823.  Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARHGAP5 MUTATED 0 3 16
ARHGAP5 WILD-TYPE 42 170 131

Figure S899.  Get High-res Image Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 0.24

Table S2824.  Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARHGAP5 MUTATED 5 1 8
ARHGAP5 WILD-TYPE 57 72 67

Figure S900.  Get High-res Image Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S2825.  Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARHGAP5 MUTATED 2 6 9
ARHGAP5 WILD-TYPE 68 114 91
'ARHGAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S2826.  Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARHGAP5 MUTATED 2 3 1 0 2 6 1 1 1
ARHGAP5 WILD-TYPE 39 23 29 29 37 63 19 13 21
'ARHGAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S2827.  Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARHGAP5 MUTATED 2 5 7 5
ARHGAP5 WILD-TYPE 98 67 65 116
'ARHGAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00072 (Fisher's exact test), Q value = 0.02

Table S2828.  Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARHGAP5 MUTATED 4 0 9 2 4
ARHGAP5 WILD-TYPE 55 75 65 117 34

Figure S901.  Get High-res Image Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S2829.  Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARHGAP5 MUTATED 2 7 3 2 5
ARHGAP5 WILD-TYPE 49 69 58 69 90
'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00244 (Fisher's exact test), Q value = 0.042

Table S2830.  Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARHGAP5 MUTATED 3 4 0 5 1 0 1 4 1
ARHGAP5 WILD-TYPE 66 44 39 11 52 20 20 34 49

Figure S902.  Get High-res Image Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S2831.  Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ARHGAP5 MUTATED 0 0 1 1 3 1
ARHGAP5 WILD-TYPE 13 16 13 10 8 8
'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S2832.  Gene #269: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ARHGAP5 MUTATED 1 0 0 1 1 0 3 0 0
ARHGAP5 WILD-TYPE 10 7 7 8 7 7 8 9 5
'MAGEC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S2833.  Gene #270: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MAGEC1 MUTATED 5 0 3 2 0
MAGEC1 WILD-TYPE 27 18 43 25 23
'MAGEC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S2834.  Gene #270: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MAGEC1 MUTATED 4 2 4
MAGEC1 WILD-TYPE 39 65 32
'MAGEC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S2835.  Gene #270: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAGEC1 MUTATED 1 12 14
MAGEC1 WILD-TYPE 41 161 133
'MAGEC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S2836.  Gene #270: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAGEC1 MUTATED 4 6 9
MAGEC1 WILD-TYPE 58 67 66
'MAGEC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S2837.  Gene #270: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAGEC1 MUTATED 4 9 8
MAGEC1 WILD-TYPE 66 111 92
'MAGEC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S2838.  Gene #270: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAGEC1 MUTATED 2 2 1 4 4 3 1 0 4
MAGEC1 WILD-TYPE 39 24 29 25 35 66 19 14 18
'MAGEC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S2839.  Gene #270: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAGEC1 MUTATED 7 6 7 8
MAGEC1 WILD-TYPE 93 66 65 113
'MAGEC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.93

Table S2840.  Gene #270: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAGEC1 MUTATED 6 6 6 6 4
MAGEC1 WILD-TYPE 53 69 68 113 34
'MAGEC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.85

Table S2841.  Gene #270: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAGEC1 MUTATED 6 4 6 6 5
MAGEC1 WILD-TYPE 45 72 55 65 90
'MAGEC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S2842.  Gene #270: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAGEC1 MUTATED 3 3 3 1 5 5 1 3 3
MAGEC1 WILD-TYPE 66 45 36 15 48 15 20 35 47
'MAGEC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.63

Table S2843.  Gene #270: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAGEC1 MUTATED 1 0 1 0 1 2
MAGEC1 WILD-TYPE 12 16 13 11 10 7
'MAGEC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S2844.  Gene #270: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAGEC1 MUTATED 1 0 0 1 0 0 0 1 2
MAGEC1 WILD-TYPE 10 7 7 8 8 7 11 8 3
'RAB28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.18

Table S2845.  Gene #271: 'RAB28 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RAB28 MUTATED 1 0 5
RAB28 WILD-TYPE 41 173 142

Figure S903.  Get High-res Image Gene #271: 'RAB28 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAB28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S2846.  Gene #271: 'RAB28 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RAB28 MUTATED 2 0 4
RAB28 WILD-TYPE 60 73 71
'RAB28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.78

Table S2847.  Gene #271: 'RAB28 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RAB28 MUTATED 0 3 3
RAB28 WILD-TYPE 70 117 97
'RAB28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S2848.  Gene #271: 'RAB28 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RAB28 MUTATED 0 1 0 1 0 3 1 0 0
RAB28 WILD-TYPE 41 25 30 28 39 66 19 14 22
'RAB28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 0.13

Table S2849.  Gene #271: 'RAB28 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RAB28 MUTATED 1 4 1 0
RAB28 WILD-TYPE 99 68 71 121

Figure S904.  Get High-res Image Gene #271: 'RAB28 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RAB28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0255 (Fisher's exact test), Q value = 0.17

Table S2850.  Gene #271: 'RAB28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RAB28 MUTATED 0 2 4 0 0
RAB28 WILD-TYPE 59 73 70 119 38

Figure S905.  Get High-res Image Gene #271: 'RAB28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RAB28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00318 (Fisher's exact test), Q value = 0.049

Table S2851.  Gene #271: 'RAB28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RAB28 MUTATED 1 5 0 0 0
RAB28 WILD-TYPE 50 71 61 71 95

Figure S906.  Get High-res Image Gene #271: 'RAB28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RAB28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S2852.  Gene #271: 'RAB28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RAB28 MUTATED 2 0 1 2 1 0 0 0 0
RAB28 WILD-TYPE 67 48 38 14 52 20 21 38 50
'UBR4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S2853.  Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
UBR4 MUTATED 6 0 1 2 0
UBR4 WILD-TYPE 26 18 45 25 23

Figure S907.  Get High-res Image Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'UBR4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0206 (Fisher's exact test), Q value = 0.15

Table S2854.  Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
UBR4 MUTATED 6 1 2
UBR4 WILD-TYPE 37 66 34

Figure S908.  Get High-res Image Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'UBR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S2855.  Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UBR4 MUTATED 1 9 28
UBR4 WILD-TYPE 41 164 119

Figure S909.  Get High-res Image Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UBR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S2856.  Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UBR4 MUTATED 11 6 12
UBR4 WILD-TYPE 51 67 63
'UBR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.21

Table S2857.  Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UBR4 MUTATED 4 10 17
UBR4 WILD-TYPE 66 110 83

Figure S910.  Get High-res Image Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'UBR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0615 (Fisher's exact test), Q value = 0.27

Table S2858.  Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UBR4 MUTATED 1 0 3 3 5 14 3 1 1
UBR4 WILD-TYPE 40 26 27 26 34 55 17 13 21
'UBR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.16

Table S2859.  Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UBR4 MUTATED 7 15 8 9
UBR4 WILD-TYPE 93 57 64 112

Figure S911.  Get High-res Image Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'UBR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S2860.  Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UBR4 MUTATED 2 10 18 3 6
UBR4 WILD-TYPE 57 65 56 116 32

Figure S912.  Get High-res Image Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UBR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0048

Table S2861.  Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UBR4 MUTATED 3 21 3 3 9
UBR4 WILD-TYPE 48 55 58 68 86

Figure S913.  Get High-res Image Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'UBR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.017

Table S2862.  Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UBR4 MUTATED 8 6 2 8 6 3 0 5 1
UBR4 WILD-TYPE 61 42 37 8 47 17 21 33 49

Figure S914.  Get High-res Image Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'UBR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S2863.  Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
UBR4 MUTATED 1 0 3 1 2 0
UBR4 WILD-TYPE 12 16 11 10 9 9
'UBR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S2864.  Gene #272: 'UBR4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
UBR4 MUTATED 0 0 0 0 3 1 1 2 0
UBR4 WILD-TYPE 11 7 7 9 5 6 10 7 5
'OR2T33 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0997 (Fisher's exact test), Q value = 0.34

Table S2865.  Gene #273: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OR2T33 MUTATED 3 0 0 1 0
OR2T33 WILD-TYPE 29 18 46 26 23
'OR2T33 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S2866.  Gene #273: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OR2T33 MUTATED 2 1 1
OR2T33 WILD-TYPE 41 66 35
'OR2T33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S2867.  Gene #273: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR2T33 MUTATED 1 6 9
OR2T33 WILD-TYPE 41 167 138
'OR2T33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S2868.  Gene #273: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR2T33 MUTATED 6 2 3
OR2T33 WILD-TYPE 56 71 72
'OR2T33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.98

Table S2869.  Gene #273: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR2T33 MUTATED 2 5 6
OR2T33 WILD-TYPE 68 115 94
'OR2T33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S2870.  Gene #273: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR2T33 MUTATED 3 0 2 1 2 3 1 0 1
OR2T33 WILD-TYPE 38 26 28 28 37 66 19 14 21
'OR2T33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S2871.  Gene #273: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR2T33 MUTATED 3 4 4 5
OR2T33 WILD-TYPE 97 68 68 116
'OR2T33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.78

Table S2872.  Gene #273: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR2T33 MUTATED 4 5 2 3 2
OR2T33 WILD-TYPE 55 70 72 116 36
'OR2T33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S2873.  Gene #273: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR2T33 MUTATED 3 3 2 3 5
OR2T33 WILD-TYPE 48 73 59 68 90
'OR2T33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S2874.  Gene #273: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR2T33 MUTATED 3 3 0 0 3 2 0 3 2
OR2T33 WILD-TYPE 66 45 39 16 50 18 21 35 48
'TRIP11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.074 (Fisher's exact test), Q value = 0.29

Table S2875.  Gene #274: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TRIP11 MUTATED 3 0 0 2 0
TRIP11 WILD-TYPE 29 18 46 25 23
'TRIP11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S2876.  Gene #274: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TRIP11 MUTATED 3 1 1
TRIP11 WILD-TYPE 40 66 35
'TRIP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.011

Table S2877.  Gene #274: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRIP11 MUTATED 0 3 16
TRIP11 WILD-TYPE 42 170 131

Figure S915.  Get High-res Image Gene #274: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRIP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S2878.  Gene #274: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRIP11 MUTATED 4 3 7
TRIP11 WILD-TYPE 58 70 68
'TRIP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S2879.  Gene #274: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRIP11 MUTATED 1 6 7
TRIP11 WILD-TYPE 69 114 93
'TRIP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S2880.  Gene #274: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRIP11 MUTATED 1 0 2 3 0 5 2 1 0
TRIP11 WILD-TYPE 40 26 28 26 39 64 18 13 22
'TRIP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S2881.  Gene #274: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRIP11 MUTATED 3 8 3 5
TRIP11 WILD-TYPE 97 64 69 116
'TRIP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S2882.  Gene #274: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRIP11 MUTATED 3 4 7 2 3
TRIP11 WILD-TYPE 56 71 67 117 35
'TRIP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.26

Table S2883.  Gene #274: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRIP11 MUTATED 1 9 3 1 4
TRIP11 WILD-TYPE 50 67 58 70 91
'TRIP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.42

Table S2884.  Gene #274: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRIP11 MUTATED 4 3 1 4 2 1 0 2 1
TRIP11 WILD-TYPE 65 45 38 12 51 19 21 36 49
'ZBTB7C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S2885.  Gene #275: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZBTB7C MUTATED 2 1 0 2 0
ZBTB7C WILD-TYPE 30 17 46 25 23
'ZBTB7C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.28

Table S2886.  Gene #275: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZBTB7C MUTATED 4 1 0
ZBTB7C WILD-TYPE 39 66 36
'ZBTB7C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00887 (Fisher's exact test), Q value = 0.088

Table S2887.  Gene #275: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZBTB7C MUTATED 1 2 11
ZBTB7C WILD-TYPE 41 171 136

Figure S916.  Get High-res Image Gene #275: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZBTB7C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S2888.  Gene #275: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZBTB7C MUTATED 2 2 5
ZBTB7C WILD-TYPE 60 71 70
'ZBTB7C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.76

Table S2889.  Gene #275: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZBTB7C MUTATED 4 5 2
ZBTB7C WILD-TYPE 66 115 98
'ZBTB7C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0559 (Fisher's exact test), Q value = 0.25

Table S2890.  Gene #275: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZBTB7C MUTATED 2 2 0 0 4 1 0 2 0
ZBTB7C WILD-TYPE 39 24 30 29 35 68 20 12 22
'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S2891.  Gene #275: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZBTB7C MUTATED 3 5 2 4
ZBTB7C WILD-TYPE 97 67 70 117
'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 0.1

Table S2892.  Gene #275: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZBTB7C MUTATED 1 2 6 1 4
ZBTB7C WILD-TYPE 58 73 68 118 34

Figure S917.  Get High-res Image Gene #275: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.53

Table S2893.  Gene #275: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZBTB7C MUTATED 2 5 2 0 5
ZBTB7C WILD-TYPE 49 71 59 71 90
'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00091 (Fisher's exact test), Q value = 0.023

Table S2894.  Gene #275: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZBTB7C MUTATED 0 2 2 4 2 0 0 4 0
ZBTB7C WILD-TYPE 69 46 37 12 51 20 21 34 50

Figure S918.  Get High-res Image Gene #275: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 0.34

Table S2895.  Gene #275: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZBTB7C MUTATED 0 0 0 1 2 0
ZBTB7C WILD-TYPE 13 16 14 10 9 9
'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S2896.  Gene #275: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZBTB7C MUTATED 0 0 1 2 0 0 0 0 0
ZBTB7C WILD-TYPE 11 7 6 7 8 7 11 9 5
'ABCC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.99

Table S2897.  Gene #276: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ABCC4 MUTATED 2 0 2 2 0
ABCC4 WILD-TYPE 30 18 44 25 23
'ABCC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S2898.  Gene #276: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ABCC4 MUTATED 2 2 2
ABCC4 WILD-TYPE 41 65 34
'ABCC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.17

Table S2899.  Gene #276: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ABCC4 MUTATED 1 5 14
ABCC4 WILD-TYPE 41 168 133

Figure S919.  Get High-res Image Gene #276: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ABCC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.55

Table S2900.  Gene #276: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ABCC4 MUTATED 6 2 4
ABCC4 WILD-TYPE 56 71 71
'ABCC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S2901.  Gene #276: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ABCC4 MUTATED 3 5 9
ABCC4 WILD-TYPE 67 115 91
'ABCC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S2902.  Gene #276: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ABCC4 MUTATED 2 1 3 2 1 7 1 0 0
ABCC4 WILD-TYPE 39 25 27 27 38 62 19 14 22
'ABCC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S2903.  Gene #276: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ABCC4 MUTATED 6 5 3 6
ABCC4 WILD-TYPE 94 67 69 115
'ABCC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.74

Table S2904.  Gene #276: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ABCC4 MUTATED 2 5 5 4 4
ABCC4 WILD-TYPE 57 70 69 115 34
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.989 (Fisher's exact test), Q value = 1

Table S2905.  Gene #276: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ABCC4 MUTATED 3 4 3 3 6
ABCC4 WILD-TYPE 48 72 58 68 89
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.9

Table S2906.  Gene #276: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ABCC4 MUTATED 2 4 1 2 4 1 0 3 2
ABCC4 WILD-TYPE 67 44 38 14 49 19 21 35 48
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S2907.  Gene #276: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ABCC4 MUTATED 1 1 0 0 1 1
ABCC4 WILD-TYPE 12 15 14 11 10 8
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S2908.  Gene #276: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ABCC4 MUTATED 0 0 0 1 0 2 1 0 0
ABCC4 WILD-TYPE 11 7 7 8 8 5 10 9 5
'CENPF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S2909.  Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CENPF MUTATED 10 0 0 2 0
CENPF WILD-TYPE 22 18 46 25 23

Figure S920.  Get High-res Image Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CENPF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S2910.  Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CENPF MUTATED 11 1 0
CENPF WILD-TYPE 32 66 36

Figure S921.  Get High-res Image Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CENPF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00101 (Fisher's exact test), Q value = 0.025

Table S2911.  Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CENPF MUTATED 1 12 27
CENPF WILD-TYPE 41 161 120

Figure S922.  Get High-res Image Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CENPF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S2912.  Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CENPF MUTATED 8 8 13
CENPF WILD-TYPE 54 65 62
'CENPF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.21

Table S2913.  Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CENPF MUTATED 4 14 19
CENPF WILD-TYPE 66 106 81

Figure S923.  Get High-res Image Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CENPF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S2914.  Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CENPF MUTATED 7 2 3 4 2 12 5 0 2
CENPF WILD-TYPE 34 24 27 25 37 57 15 14 20
'CENPF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S2915.  Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CENPF MUTATED 6 13 8 14
CENPF WILD-TYPE 94 59 64 107
'CENPF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S2916.  Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CENPF MUTATED 5 10 11 4 11
CENPF WILD-TYPE 54 65 63 115 27

Figure S924.  Get High-res Image Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CENPF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.19

Table S2917.  Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CENPF MUTATED 7 13 4 2 12
CENPF WILD-TYPE 44 63 57 69 83

Figure S925.  Get High-res Image Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CENPF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00475 (Fisher's exact test), Q value = 0.064

Table S2918.  Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CENPF MUTATED 9 8 0 4 3 4 0 7 3
CENPF WILD-TYPE 60 40 39 12 50 16 21 31 47

Figure S926.  Get High-res Image Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CENPF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S2919.  Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CENPF MUTATED 1 3 1 1 0 1
CENPF WILD-TYPE 12 13 13 10 11 8
'CENPF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 0.97

Table S2920.  Gene #277: 'CENPF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CENPF MUTATED 1 0 2 0 1 0 1 1 1
CENPF WILD-TYPE 10 7 5 9 7 7 10 8 4
'MYO3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S2921.  Gene #278: 'MYO3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MYO3B MUTATED 1 13 17
MYO3B WILD-TYPE 41 160 130
'MYO3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S2922.  Gene #278: 'MYO3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MYO3B MUTATED 11 9 9
MYO3B WILD-TYPE 51 64 66
'MYO3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0872 (Fisher's exact test), Q value = 0.32

Table S2923.  Gene #278: 'MYO3B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MYO3B MUTATED 4 9 15
MYO3B WILD-TYPE 66 111 85
'MYO3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S2924.  Gene #278: 'MYO3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MYO3B MUTATED 6 1 1 3 3 11 1 2 0
MYO3B WILD-TYPE 35 25 29 26 36 58 19 12 22
'MYO3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.17

Table S2925.  Gene #278: 'MYO3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MYO3B MUTATED 8 10 9 4
MYO3B WILD-TYPE 92 62 63 117

Figure S927.  Get High-res Image Gene #278: 'MYO3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MYO3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00052 (Fisher's exact test), Q value = 0.016

Table S2926.  Gene #278: 'MYO3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MYO3B MUTATED 4 9 14 2 2
MYO3B WILD-TYPE 55 66 60 117 36

Figure S928.  Get High-res Image Gene #278: 'MYO3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYO3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S2927.  Gene #278: 'MYO3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MYO3B MUTATED 9 14 4 1 2
MYO3B WILD-TYPE 42 62 57 70 93

Figure S929.  Get High-res Image Gene #278: 'MYO3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MYO3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0393 (Fisher's exact test), Q value = 0.21

Table S2928.  Gene #278: 'MYO3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MYO3B MUTATED 12 5 2 2 5 2 1 0 1
MYO3B WILD-TYPE 57 43 37 14 48 18 20 38 49

Figure S930.  Get High-res Image Gene #278: 'MYO3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MYO3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S2929.  Gene #278: 'MYO3B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MYO3B MUTATED 0 1 3 1 2 1
MYO3B WILD-TYPE 13 15 11 10 9 8
'MYO3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S2930.  Gene #278: 'MYO3B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MYO3B MUTATED 1 0 0 0 3 3 0 1 0
MYO3B WILD-TYPE 10 7 7 9 5 4 11 8 5

Figure S931.  Get High-res Image Gene #278: 'MYO3B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'G3BP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.14

Table S2931.  Gene #279: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
G3BP2 MUTATED 0 1 8
G3BP2 WILD-TYPE 42 172 139

Figure S932.  Get High-res Image Gene #279: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'G3BP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S2932.  Gene #279: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
G3BP2 MUTATED 3 0 4
G3BP2 WILD-TYPE 59 73 71
'G3BP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00627 (Fisher's exact test), Q value = 0.074

Table S2933.  Gene #279: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
G3BP2 MUTATED 0 1 7
G3BP2 WILD-TYPE 70 119 93

Figure S933.  Get High-res Image Gene #279: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'G3BP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S2934.  Gene #279: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
G3BP2 MUTATED 1 0 1 0 0 4 2 0 0
G3BP2 WILD-TYPE 40 26 29 29 39 65 18 14 22
'G3BP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.051 (Fisher's exact test), Q value = 0.24

Table S2935.  Gene #279: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
G3BP2 MUTATED 0 3 4 2
G3BP2 WILD-TYPE 100 69 68 119
'G3BP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.57

Table S2936.  Gene #279: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
G3BP2 MUTATED 2 1 4 1 1
G3BP2 WILD-TYPE 57 74 70 118 37
'G3BP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S2937.  Gene #279: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
G3BP2 MUTATED 0 5 1 1 1
G3BP2 WILD-TYPE 51 71 60 70 94
'G3BP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0278 (Fisher's exact test), Q value = 0.17

Table S2938.  Gene #279: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
G3BP2 MUTATED 1 2 0 2 1 2 0 0 0
G3BP2 WILD-TYPE 68 46 39 14 52 18 21 38 50

Figure S934.  Get High-res Image Gene #279: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'G3BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.72

Table S2939.  Gene #279: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
G3BP2 MUTATED 0 0 2 1 1 0
G3BP2 WILD-TYPE 13 16 12 10 10 9
'G3BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S2940.  Gene #279: 'G3BP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
G3BP2 MUTATED 0 0 1 0 0 0 2 0 1
G3BP2 WILD-TYPE 11 7 6 9 8 7 9 9 4
'MBD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00532 (Fisher's exact test), Q value = 0.069

Table S2941.  Gene #280: 'MBD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MBD6 MUTATED 1 2 12
MBD6 WILD-TYPE 41 171 135

Figure S935.  Get High-res Image Gene #280: 'MBD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MBD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S2942.  Gene #280: 'MBD6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MBD6 MUTATED 4 2 6
MBD6 WILD-TYPE 58 71 69
'MBD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.97

Table S2943.  Gene #280: 'MBD6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MBD6 MUTATED 2 5 6
MBD6 WILD-TYPE 68 115 94
'MBD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S2944.  Gene #280: 'MBD6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MBD6 MUTATED 0 1 3 1 1 5 2 0 0
MBD6 WILD-TYPE 41 25 27 28 38 64 18 14 22
'MBD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.46

Table S2945.  Gene #280: 'MBD6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MBD6 MUTATED 2 5 5 3
MBD6 WILD-TYPE 98 67 67 118
'MBD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.011

Table S2946.  Gene #280: 'MBD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MBD6 MUTATED 0 2 10 1 2
MBD6 WILD-TYPE 59 73 64 118 36

Figure S936.  Get High-res Image Gene #280: 'MBD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MBD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0732 (Fisher's exact test), Q value = 0.29

Table S2947.  Gene #280: 'MBD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MBD6 MUTATED 0 7 3 1 3
MBD6 WILD-TYPE 51 69 58 70 92
'MBD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S2948.  Gene #280: 'MBD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MBD6 MUTATED 1 4 0 4 0 3 0 2 0
MBD6 WILD-TYPE 68 44 39 12 53 17 21 36 50

Figure S937.  Get High-res Image Gene #280: 'MBD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ANAPC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S2949.  Gene #281: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ANAPC4 MUTATED 0 5 5
ANAPC4 WILD-TYPE 42 168 142
'ANAPC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S2950.  Gene #281: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ANAPC4 MUTATED 2 3 4
ANAPC4 WILD-TYPE 60 70 71
'ANAPC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S2951.  Gene #281: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ANAPC4 MUTATED 2 5 2
ANAPC4 WILD-TYPE 68 115 98
'ANAPC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0791 (Fisher's exact test), Q value = 0.31

Table S2952.  Gene #281: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ANAPC4 MUTATED 2 0 0 3 1 1 0 2 0
ANAPC4 WILD-TYPE 39 26 30 26 38 68 20 12 22
'ANAPC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.61

Table S2953.  Gene #281: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ANAPC4 MUTATED 5 2 2 1
ANAPC4 WILD-TYPE 95 70 70 120
'ANAPC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0758 (Fisher's exact test), Q value = 0.3

Table S2954.  Gene #281: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ANAPC4 MUTATED 2 4 3 0 1
ANAPC4 WILD-TYPE 57 71 71 119 37
'ANAPC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S2955.  Gene #281: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ANAPC4 MUTATED 1 4 2 2 0
ANAPC4 WILD-TYPE 50 72 59 69 95
'ANAPC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S2956.  Gene #281: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ANAPC4 MUTATED 5 2 2 0 0 0 0 0 0
ANAPC4 WILD-TYPE 64 46 37 16 53 20 21 38 50
'ANAPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S2957.  Gene #281: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ANAPC4 MUTATED 0 1 1 1 0 0
ANAPC4 WILD-TYPE 13 15 13 10 11 9
'ANAPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S2958.  Gene #281: 'ANAPC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ANAPC4 MUTATED 0 0 0 0 1 0 1 1 0
ANAPC4 WILD-TYPE 11 7 7 9 7 7 10 8 5
'TTF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.14

Table S2959.  Gene #282: 'TTF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TTF1 MUTATED 0 1 8
TTF1 WILD-TYPE 42 172 139

Figure S938.  Get High-res Image Gene #282: 'TTF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TTF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.2

Table S2960.  Gene #282: 'TTF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TTF1 MUTATED 3 0 6
TTF1 WILD-TYPE 59 73 69

Figure S939.  Get High-res Image Gene #282: 'TTF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TTF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S2961.  Gene #282: 'TTF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TTF1 MUTATED 3 3 3
TTF1 WILD-TYPE 67 117 97
'TTF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S2962.  Gene #282: 'TTF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TTF1 MUTATED 2 1 0 2 1 1 1 1 0
TTF1 WILD-TYPE 39 25 30 27 38 68 19 13 22
'TTF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00128 (Fisher's exact test), Q value = 0.029

Table S2963.  Gene #282: 'TTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TTF1 MUTATED 1 6 2 0
TTF1 WILD-TYPE 99 66 70 121

Figure S940.  Get High-res Image Gene #282: 'TTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TTF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00034 (Fisher's exact test), Q value = 0.013

Table S2964.  Gene #282: 'TTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TTF1 MUTATED 2 0 7 0 0
TTF1 WILD-TYPE 57 75 67 119 38

Figure S941.  Get High-res Image Gene #282: 'TTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TTF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0883 (Fisher's exact test), Q value = 0.32

Table S2965.  Gene #282: 'TTF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TTF1 MUTATED 1 5 2 0 1
TTF1 WILD-TYPE 50 71 59 71 94
'TTF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0308 (Fisher's exact test), Q value = 0.19

Table S2966.  Gene #282: 'TTF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TTF1 MUTATED 2 4 0 2 0 0 0 1 0
TTF1 WILD-TYPE 67 44 39 14 53 20 21 37 50

Figure S942.  Get High-res Image Gene #282: 'TTF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S2967.  Gene #282: 'TTF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TTF1 MUTATED 0 0 2 0 1 0
TTF1 WILD-TYPE 13 16 12 11 10 9
'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S2968.  Gene #282: 'TTF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TTF1 MUTATED 0 0 0 0 1 0 2 0 0
TTF1 WILD-TYPE 11 7 7 9 7 7 9 9 5
'FAM134A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S2969.  Gene #283: 'FAM134A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FAM134A MUTATED 1 0 0 1 1
FAM134A WILD-TYPE 31 18 46 26 22
'FAM134A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S2970.  Gene #283: 'FAM134A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FAM134A MUTATED 2 0 1
FAM134A WILD-TYPE 41 67 35
'FAM134A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.66

Table S2971.  Gene #283: 'FAM134A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM134A MUTATED 1 2 5
FAM134A WILD-TYPE 41 171 142
'FAM134A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S2972.  Gene #283: 'FAM134A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM134A MUTATED 0 2 3
FAM134A WILD-TYPE 62 71 72
'FAM134A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.5

Table S2973.  Gene #283: 'FAM134A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM134A MUTATED 0 5 2
FAM134A WILD-TYPE 70 115 98
'FAM134A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S2974.  Gene #283: 'FAM134A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM134A MUTATED 0 0 1 3 1 2 0 0 0
FAM134A WILD-TYPE 41 26 29 26 38 67 20 14 22
'FAM134A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S2975.  Gene #283: 'FAM134A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM134A MUTATED 1 4 0 3
FAM134A WILD-TYPE 99 68 72 118
'FAM134A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S2976.  Gene #283: 'FAM134A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM134A MUTATED 0 2 3 1 2
FAM134A WILD-TYPE 59 73 71 118 36
'FAM134A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S2977.  Gene #283: 'FAM134A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM134A MUTATED 1 3 1 2 0
FAM134A WILD-TYPE 50 73 60 69 95
'FAM134A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S2978.  Gene #283: 'FAM134A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM134A MUTATED 2 1 1 1 0 1 1 0 0
FAM134A WILD-TYPE 67 47 38 15 53 19 20 38 50
'ZKSCAN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0748 (Fisher's exact test), Q value = 0.3

Table S2979.  Gene #284: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZKSCAN2 MUTATED 3 0 0 2 0
ZKSCAN2 WILD-TYPE 29 18 46 25 23
'ZKSCAN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0691 (Fisher's exact test), Q value = 0.28

Table S2980.  Gene #284: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZKSCAN2 MUTATED 4 1 0
ZKSCAN2 WILD-TYPE 39 66 36
'ZKSCAN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.54

Table S2981.  Gene #284: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZKSCAN2 MUTATED 0 5 8
ZKSCAN2 WILD-TYPE 42 168 139
'ZKSCAN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S2982.  Gene #284: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZKSCAN2 MUTATED 3 2 3
ZKSCAN2 WILD-TYPE 59 71 72
'ZKSCAN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S2983.  Gene #284: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZKSCAN2 MUTATED 1 2 5
ZKSCAN2 WILD-TYPE 69 118 95
'ZKSCAN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S2984.  Gene #284: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZKSCAN2 MUTATED 0 0 1 0 1 4 1 1 0
ZKSCAN2 WILD-TYPE 41 26 29 29 38 65 19 13 22
'ZKSCAN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S2985.  Gene #284: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZKSCAN2 MUTATED 3 3 2 5
ZKSCAN2 WILD-TYPE 97 69 70 116
'ZKSCAN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0518 (Fisher's exact test), Q value = 0.24

Table S2986.  Gene #284: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZKSCAN2 MUTATED 2 4 2 1 4
ZKSCAN2 WILD-TYPE 57 71 72 118 34
'ZKSCAN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S2987.  Gene #284: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZKSCAN2 MUTATED 1 2 1 4 4
ZKSCAN2 WILD-TYPE 50 74 60 67 91
'ZKSCAN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S2988.  Gene #284: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZKSCAN2 MUTATED 3 2 0 0 1 0 0 4 2
ZKSCAN2 WILD-TYPE 66 46 39 16 52 20 21 34 48
'ZKSCAN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S2989.  Gene #284: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZKSCAN2 MUTATED 2 0 0 1 0 0
ZKSCAN2 WILD-TYPE 11 16 14 10 11 9
'ZKSCAN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S2990.  Gene #284: 'ZKSCAN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZKSCAN2 MUTATED 0 0 0 1 0 0 0 1 1
ZKSCAN2 WILD-TYPE 11 7 7 8 8 7 11 8 4
'RNF182 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S2991.  Gene #285: 'RNF182 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RNF182 MUTATED 1 4 8
RNF182 WILD-TYPE 41 169 139
'RNF182 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 0.99

Table S2992.  Gene #285: 'RNF182 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RNF182 MUTATED 2 5 5
RNF182 WILD-TYPE 60 68 70
'RNF182 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.95

Table S2993.  Gene #285: 'RNF182 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RNF182 MUTATED 4 5 3
RNF182 WILD-TYPE 66 115 97
'RNF182 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S2994.  Gene #285: 'RNF182 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RNF182 MUTATED 0 1 0 2 3 3 0 1 2
RNF182 WILD-TYPE 41 25 30 27 36 66 20 13 20
'RNF182 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00214 (Fisher's exact test), Q value = 0.039

Table S2995.  Gene #285: 'RNF182 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RNF182 MUTATED 3 7 2 0
RNF182 WILD-TYPE 97 65 70 121

Figure S943.  Get High-res Image Gene #285: 'RNF182 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RNF182 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0897 (Fisher's exact test), Q value = 0.33

Table S2996.  Gene #285: 'RNF182 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RNF182 MUTATED 2 4 5 1 0
RNF182 WILD-TYPE 57 71 69 118 38
'RNF182 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S2997.  Gene #285: 'RNF182 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RNF182 MUTATED 2 5 1 3 2
RNF182 WILD-TYPE 49 71 60 68 93
'RNF182 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S2998.  Gene #285: 'RNF182 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RNF182 MUTATED 3 1 2 2 1 1 1 0 2
RNF182 WILD-TYPE 66 47 37 14 52 19 20 38 48
'RBBP7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00949 (Fisher's exact test), Q value = 0.092

Table S2999.  Gene #286: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RBBP7 MUTATED 1 0 0 4 0
RBBP7 WILD-TYPE 31 18 46 23 23

Figure S944.  Get High-res Image Gene #286: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RBBP7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S3000.  Gene #286: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RBBP7 MUTATED 3 2 0
RBBP7 WILD-TYPE 40 65 36
'RBBP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0924 (Fisher's exact test), Q value = 0.33

Table S3001.  Gene #286: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RBBP7 MUTATED 0 5 10
RBBP7 WILD-TYPE 42 168 137
'RBBP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S3002.  Gene #286: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RBBP7 MUTATED 3 1 6
RBBP7 WILD-TYPE 59 72 69
'RBBP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S3003.  Gene #286: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RBBP7 MUTATED 3 4 6
RBBP7 WILD-TYPE 67 116 94
'RBBP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S3004.  Gene #286: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RBBP7 MUTATED 3 0 1 1 2 5 0 0 1
RBBP7 WILD-TYPE 38 26 29 28 37 64 20 14 21
'RBBP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.93

Table S3005.  Gene #286: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RBBP7 MUTATED 2 3 4 6
RBBP7 WILD-TYPE 98 69 68 115
'RBBP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S3006.  Gene #286: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RBBP7 MUTATED 2 3 4 3 3
RBBP7 WILD-TYPE 57 72 70 116 35
'RBBP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.73

Table S3007.  Gene #286: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RBBP7 MUTATED 3 5 1 1 3
RBBP7 WILD-TYPE 48 71 60 70 92
'RBBP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0989 (Fisher's exact test), Q value = 0.34

Table S3008.  Gene #286: 'RBBP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RBBP7 MUTATED 0 5 0 1 2 1 1 1 2
RBBP7 WILD-TYPE 69 43 39 15 51 19 20 37 48
'MAGEA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S3009.  Gene #287: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAGEA1 MUTATED 2 6 5
MAGEA1 WILD-TYPE 40 167 142
'MAGEA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S3010.  Gene #287: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAGEA1 MUTATED 7 4 2
MAGEA1 WILD-TYPE 55 69 73
'MAGEA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.65

Table S3011.  Gene #287: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAGEA1 MUTATED 1 4 6
MAGEA1 WILD-TYPE 69 116 94
'MAGEA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S3012.  Gene #287: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAGEA1 MUTATED 2 1 1 1 0 5 1 0 0
MAGEA1 WILD-TYPE 39 25 29 28 39 64 19 14 22
'MAGEA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.3

Table S3013.  Gene #287: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAGEA1 MUTATED 3 4 5 1
MAGEA1 WILD-TYPE 97 68 67 120
'MAGEA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.059 (Fisher's exact test), Q value = 0.26

Table S3014.  Gene #287: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAGEA1 MUTATED 4 3 5 1 0
MAGEA1 WILD-TYPE 55 72 69 118 38
'MAGEA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S3015.  Gene #287: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAGEA1 MUTATED 2 7 3 0 1
MAGEA1 WILD-TYPE 49 69 58 71 94

Figure S945.  Get High-res Image Gene #287: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MAGEA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.93

Table S3016.  Gene #287: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAGEA1 MUTATED 3 4 1 1 2 1 0 0 1
MAGEA1 WILD-TYPE 66 44 38 15 51 19 21 38 49
'MAGEA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.72

Table S3017.  Gene #287: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAGEA1 MUTATED 0 2 2 2 0 0
MAGEA1 WILD-TYPE 13 14 12 9 11 9
'MAGEA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S3018.  Gene #287: 'MAGEA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAGEA1 MUTATED 1 1 2 0 1 0 1 0 0
MAGEA1 WILD-TYPE 10 6 5 9 7 7 10 9 5
'HEPACAM2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.25

Table S3019.  Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HEPACAM2 MUTATED 3 0 0 0 0
HEPACAM2 WILD-TYPE 29 18 46 27 23
'HEPACAM2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0382 (Fisher's exact test), Q value = 0.21

Table S3020.  Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HEPACAM2 MUTATED 3 0 0
HEPACAM2 WILD-TYPE 40 67 36

Figure S946.  Get High-res Image Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HEPACAM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0058 (Fisher's exact test), Q value = 0.072

Table S3021.  Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HEPACAM2 MUTATED 2 1 10
HEPACAM2 WILD-TYPE 40 172 137

Figure S947.  Get High-res Image Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HEPACAM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00954 (Fisher's exact test), Q value = 0.092

Table S3022.  Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HEPACAM2 MUTATED 8 1 2
HEPACAM2 WILD-TYPE 54 72 73

Figure S948.  Get High-res Image Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HEPACAM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.19

Table S3023.  Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HEPACAM2 MUTATED 1 2 8
HEPACAM2 WILD-TYPE 69 118 92

Figure S949.  Get High-res Image Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'HEPACAM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 0.75

Table S3024.  Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HEPACAM2 MUTATED 1 0 0 1 3 6 0 0 0
HEPACAM2 WILD-TYPE 40 26 30 28 36 63 20 14 22
'HEPACAM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0717 (Fisher's exact test), Q value = 0.29

Table S3025.  Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HEPACAM2 MUTATED 1 3 6 3
HEPACAM2 WILD-TYPE 99 69 66 118
'HEPACAM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00034 (Fisher's exact test), Q value = 0.013

Table S3026.  Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HEPACAM2 MUTATED 1 1 8 0 3
HEPACAM2 WILD-TYPE 58 74 66 119 35

Figure S950.  Get High-res Image Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00553 (Fisher's exact test), Q value = 0.07

Table S3027.  Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HEPACAM2 MUTATED 0 8 2 0 3
HEPACAM2 WILD-TYPE 51 68 59 71 92

Figure S951.  Get High-res Image Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S3028.  Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HEPACAM2 MUTATED 3 3 1 2 2 0 0 2 0
HEPACAM2 WILD-TYPE 66 45 38 14 51 20 21 36 50
'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S3029.  Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HEPACAM2 MUTATED 0 1 1 0 2 0
HEPACAM2 WILD-TYPE 13 15 13 11 9 9
'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S3030.  Gene #288: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HEPACAM2 MUTATED 1 0 0 0 0 1 2 0 0
HEPACAM2 WILD-TYPE 10 7 7 9 8 6 9 9 5
'DHX35 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S3031.  Gene #289: 'DHX35 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DHX35 MUTATED 2 0 0 1 0
DHX35 WILD-TYPE 30 18 46 26 23
'DHX35 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3032.  Gene #289: 'DHX35 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DHX35 MUTATED 1 1 1
DHX35 WILD-TYPE 42 66 35
'DHX35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S3033.  Gene #289: 'DHX35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DHX35 MUTATED 2 2 6
DHX35 WILD-TYPE 40 171 141
'DHX35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S3034.  Gene #289: 'DHX35 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DHX35 MUTATED 2 1 4
DHX35 WILD-TYPE 60 72 71
'DHX35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S3035.  Gene #289: 'DHX35 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DHX35 MUTATED 1 3 5
DHX35 WILD-TYPE 69 117 95
'DHX35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S3036.  Gene #289: 'DHX35 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DHX35 MUTATED 2 0 1 2 0 2 2 0 0
DHX35 WILD-TYPE 39 26 29 27 39 67 18 14 22
'DHX35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S3037.  Gene #289: 'DHX35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DHX35 MUTATED 2 5 1 3
DHX35 WILD-TYPE 98 67 71 118
'DHX35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.89

Table S3038.  Gene #289: 'DHX35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DHX35 MUTATED 1 3 4 2 1
DHX35 WILD-TYPE 58 72 70 117 37
'DHX35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S3039.  Gene #289: 'DHX35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DHX35 MUTATED 1 5 0 1 4
DHX35 WILD-TYPE 50 71 61 70 91
'DHX35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.17

Table S3040.  Gene #289: 'DHX35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DHX35 MUTATED 2 0 1 3 2 2 0 0 1
DHX35 WILD-TYPE 67 48 38 13 51 18 21 38 49

Figure S952.  Get High-res Image Gene #289: 'DHX35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DHX35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S3041.  Gene #289: 'DHX35 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DHX35 MUTATED 0 1 0 0 1 1
DHX35 WILD-TYPE 13 15 14 11 10 8
'DHX35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S3042.  Gene #289: 'DHX35 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DHX35 MUTATED 2 0 0 1 0 0 0 0 0
DHX35 WILD-TYPE 9 7 7 8 8 7 11 9 5
'PARP12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S3043.  Gene #290: 'PARP12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PARP12 MUTATED 1 2 6
PARP12 WILD-TYPE 41 171 141
'PARP12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.73

Table S3044.  Gene #290: 'PARP12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PARP12 MUTATED 2 1 4
PARP12 WILD-TYPE 60 72 71
'PARP12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.5

Table S3045.  Gene #290: 'PARP12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PARP12 MUTATED 0 2 4
PARP12 WILD-TYPE 70 118 96
'PARP12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S3046.  Gene #290: 'PARP12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PARP12 MUTATED 0 0 0 1 0 4 0 1 0
PARP12 WILD-TYPE 41 26 30 28 39 65 20 13 22
'PARP12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.74

Table S3047.  Gene #290: 'PARP12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PARP12 MUTATED 2 4 1 2
PARP12 WILD-TYPE 98 68 71 119
'PARP12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0682 (Fisher's exact test), Q value = 0.28

Table S3048.  Gene #290: 'PARP12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PARP12 MUTATED 1 3 3 0 2
PARP12 WILD-TYPE 58 72 71 119 36
'PARP12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S3049.  Gene #290: 'PARP12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PARP12 MUTATED 1 5 1 0 2
PARP12 WILD-TYPE 50 71 60 71 93
'PARP12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.73

Table S3050.  Gene #290: 'PARP12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PARP12 MUTATED 3 0 1 1 1 1 0 2 0
PARP12 WILD-TYPE 66 48 38 15 52 19 21 36 50
'PARP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.95

Table S3051.  Gene #290: 'PARP12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PARP12 MUTATED 0 0 1 1 1 0
PARP12 WILD-TYPE 13 16 13 10 10 9
'PARP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S3052.  Gene #290: 'PARP12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PARP12 MUTATED 0 0 0 1 0 0 2 0 0
PARP12 WILD-TYPE 11 7 7 8 8 7 9 9 5
'BRCA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S3053.  Gene #291: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BRCA2 MUTATED 3 0 0 2 1
BRCA2 WILD-TYPE 29 18 46 25 22
'BRCA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S3054.  Gene #291: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BRCA2 MUTATED 4 1 1
BRCA2 WILD-TYPE 39 66 35
'BRCA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0521 (Fisher's exact test), Q value = 0.24

Table S3055.  Gene #291: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BRCA2 MUTATED 2 19 26
BRCA2 WILD-TYPE 40 154 121
'BRCA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S3056.  Gene #291: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BRCA2 MUTATED 17 12 12
BRCA2 WILD-TYPE 45 61 63
'BRCA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 0.25

Table S3057.  Gene #291: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BRCA2 MUTATED 5 15 20
BRCA2 WILD-TYPE 65 105 80
'BRCA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S3058.  Gene #291: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BRCA2 MUTATED 5 3 3 3 4 13 3 2 4
BRCA2 WILD-TYPE 36 23 27 26 35 56 17 12 18
'BRCA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 0.12

Table S3059.  Gene #291: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BRCA2 MUTATED 11 13 15 8
BRCA2 WILD-TYPE 89 59 57 113

Figure S953.  Get High-res Image Gene #291: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BRCA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00022 (Fisher's exact test), Q value = 0.0096

Table S3060.  Gene #291: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BRCA2 MUTATED 9 12 18 4 4
BRCA2 WILD-TYPE 50 63 56 115 34

Figure S954.  Get High-res Image Gene #291: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BRCA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00366 (Fisher's exact test), Q value = 0.054

Table S3061.  Gene #291: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BRCA2 MUTATED 8 19 8 4 7
BRCA2 WILD-TYPE 43 57 53 67 88

Figure S955.  Get High-res Image Gene #291: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BRCA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00233 (Fisher's exact test), Q value = 0.041

Table S3062.  Gene #291: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BRCA2 MUTATED 11 10 3 6 7 5 0 2 2
BRCA2 WILD-TYPE 58 38 36 10 46 15 21 36 48

Figure S956.  Get High-res Image Gene #291: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BRCA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.73

Table S3063.  Gene #291: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BRCA2 MUTATED 1 1 4 3 3 1
BRCA2 WILD-TYPE 12 15 10 8 8 8
'BRCA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S3064.  Gene #291: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BRCA2 MUTATED 2 1 0 1 1 0 6 1 1
BRCA2 WILD-TYPE 9 6 7 8 7 7 5 8 4
'IFIT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00678 (Fisher's exact test), Q value = 0.077

Table S3065.  Gene #292: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IFIT2 MUTATED 0 0 7
IFIT2 WILD-TYPE 42 173 140

Figure S957.  Get High-res Image Gene #292: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IFIT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 0.21

Table S3066.  Gene #292: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IFIT2 MUTATED 4 0 1
IFIT2 WILD-TYPE 58 73 74

Figure S958.  Get High-res Image Gene #292: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'IFIT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S3067.  Gene #292: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IFIT2 MUTATED 1 1 4
IFIT2 WILD-TYPE 69 119 96
'IFIT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S3068.  Gene #292: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IFIT2 MUTATED 2 0 0 0 1 2 0 1 0
IFIT2 WILD-TYPE 39 26 30 29 38 67 20 13 22
'IFIT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S3069.  Gene #292: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IFIT2 MUTATED 0 2 3 2
IFIT2 WILD-TYPE 100 70 69 119
'IFIT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S3070.  Gene #292: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IFIT2 MUTATED 2 0 3 0 2
IFIT2 WILD-TYPE 57 75 71 119 36

Figure S959.  Get High-res Image Gene #292: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IFIT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.77

Table S3071.  Gene #292: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IFIT2 MUTATED 0 2 2 0 3
IFIT2 WILD-TYPE 51 74 59 71 92
'IFIT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 0.1

Table S3072.  Gene #292: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IFIT2 MUTATED 0 3 0 1 0 0 0 3 0
IFIT2 WILD-TYPE 69 45 39 15 53 20 21 35 50

Figure S960.  Get High-res Image Gene #292: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IFIT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S3073.  Gene #292: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IFIT2 MUTATED 0 1 0 0 2 0
IFIT2 WILD-TYPE 13 15 14 11 9 9
'IFIT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S3074.  Gene #292: 'IFIT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IFIT2 MUTATED 0 0 0 1 0 1 1 0 0
IFIT2 WILD-TYPE 11 7 7 8 8 6 10 9 5
'MUC17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0098

Table S3075.  Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MUC17 MUTATED 7 1 0 6 0
MUC17 WILD-TYPE 25 17 46 21 23

Figure S961.  Get High-res Image Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MUC17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S3076.  Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MUC17 MUTATED 7 6 1
MUC17 WILD-TYPE 36 61 35
'MUC17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0096

Table S3077.  Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MUC17 MUTATED 7 9 28
MUC17 WILD-TYPE 35 164 119

Figure S962.  Get High-res Image Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MUC17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0876 (Fisher's exact test), Q value = 0.32

Table S3078.  Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MUC17 MUTATED 8 7 17
MUC17 WILD-TYPE 54 66 58
'MUC17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 0.18

Table S3079.  Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MUC17 MUTATED 3 16 17
MUC17 WILD-TYPE 67 104 83

Figure S963.  Get High-res Image Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MUC17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.97

Table S3080.  Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MUC17 MUTATED 3 3 3 3 5 13 2 3 1
MUC17 WILD-TYPE 38 23 27 26 34 56 18 11 21
'MUC17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S3081.  Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MUC17 MUTATED 10 14 8 14
MUC17 WILD-TYPE 90 58 64 107
'MUC17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00355 (Fisher's exact test), Q value = 0.053

Table S3082.  Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MUC17 MUTATED 3 9 18 9 7
MUC17 WILD-TYPE 56 66 56 110 31

Figure S964.  Get High-res Image Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MUC17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.2

Table S3083.  Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MUC17 MUTATED 6 16 6 3 13
MUC17 WILD-TYPE 45 60 55 68 82

Figure S965.  Get High-res Image Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MUC17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0896 (Fisher's exact test), Q value = 0.32

Table S3084.  Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MUC17 MUTATED 9 7 4 5 3 4 0 7 5
MUC17 WILD-TYPE 60 41 35 11 50 16 21 31 45
'MUC17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.64

Table S3085.  Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MUC17 MUTATED 0 1 1 2 3 1
MUC17 WILD-TYPE 13 15 13 9 8 8
'MUC17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S3086.  Gene #293: 'MUC17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MUC17 MUTATED 2 0 1 1 0 2 2 0 0
MUC17 WILD-TYPE 9 7 6 8 8 5 9 9 5
'TET3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S3087.  Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TET3 MUTATED 1 0 0 1 2
TET3 WILD-TYPE 31 18 46 26 21
'TET3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S3088.  Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TET3 MUTATED 2 1 1
TET3 WILD-TYPE 41 66 35
'TET3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00757 (Fisher's exact test), Q value = 0.081

Table S3089.  Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TET3 MUTATED 1 4 15
TET3 WILD-TYPE 41 169 132

Figure S966.  Get High-res Image Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TET3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.1

Table S3090.  Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TET3 MUTATED 2 2 11
TET3 WILD-TYPE 60 71 64

Figure S967.  Get High-res Image Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TET3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S3091.  Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TET3 MUTATED 3 6 7
TET3 WILD-TYPE 67 114 93
'TET3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S3092.  Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TET3 MUTATED 0 2 1 3 2 7 1 0 0
TET3 WILD-TYPE 41 24 29 26 37 62 19 14 22
'TET3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.13

Table S3093.  Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TET3 MUTATED 3 10 2 5
TET3 WILD-TYPE 97 62 70 116

Figure S968.  Get High-res Image Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TET3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00111 (Fisher's exact test), Q value = 0.027

Table S3094.  Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TET3 MUTATED 0 3 11 3 3
TET3 WILD-TYPE 59 72 63 116 35

Figure S969.  Get High-res Image Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TET3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0072

Table S3095.  Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TET3 MUTATED 0 13 0 3 4
TET3 WILD-TYPE 51 63 61 68 91

Figure S970.  Get High-res Image Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TET3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S3096.  Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TET3 MUTATED 3 1 2 8 0 0 0 4 2
TET3 WILD-TYPE 66 47 37 8 53 20 21 34 48

Figure S971.  Get High-res Image Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TET3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00191 (Fisher's exact test), Q value = 0.037

Table S3097.  Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TET3 MUTATED 1 0 0 0 4 0
TET3 WILD-TYPE 12 16 14 11 7 9

Figure S972.  Get High-res Image Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TET3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 0.98

Table S3098.  Gene #294: 'TET3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TET3 MUTATED 0 0 0 2 1 0 1 1 0
TET3 WILD-TYPE 11 7 7 7 7 7 10 8 5
'TOB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S3099.  Gene #295: 'TOB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TOB1 MUTATED 0 1 5
TOB1 WILD-TYPE 42 172 142
'TOB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S3100.  Gene #295: 'TOB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TOB1 MUTATED 1 1 4
TOB1 WILD-TYPE 61 72 71
'TOB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0873 (Fisher's exact test), Q value = 0.32

Table S3101.  Gene #295: 'TOB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TOB1 MUTATED 2 0 3
TOB1 WILD-TYPE 68 120 97
'TOB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S3102.  Gene #295: 'TOB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TOB1 MUTATED 1 0 0 0 0 3 0 0 1
TOB1 WILD-TYPE 40 26 30 29 39 66 20 14 21
'TOB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00209 (Fisher's exact test), Q value = 0.039

Table S3103.  Gene #295: 'TOB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TOB1 MUTATED 1 5 0 0
TOB1 WILD-TYPE 99 67 72 121

Figure S973.  Get High-res Image Gene #295: 'TOB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TOB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0522 (Fisher's exact test), Q value = 0.24

Table S3104.  Gene #295: 'TOB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TOB1 MUTATED 1 1 4 0 0
TOB1 WILD-TYPE 58 74 70 119 38
'TOB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00532 (Fisher's exact test), Q value = 0.069

Table S3105.  Gene #295: 'TOB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TOB1 MUTATED 0 5 1 0 0
TOB1 WILD-TYPE 51 71 60 71 95

Figure S974.  Get High-res Image Gene #295: 'TOB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TOB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S3106.  Gene #295: 'TOB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TOB1 MUTATED 3 1 0 1 1 0 0 0 0
TOB1 WILD-TYPE 66 47 39 15 52 20 21 38 50
'GOLPH3L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S3107.  Gene #296: 'GOLPH3L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GOLPH3L MUTATED 0 2 3
GOLPH3L WILD-TYPE 42 171 144
'GOLPH3L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3108.  Gene #296: 'GOLPH3L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GOLPH3L MUTATED 1 1 2
GOLPH3L WILD-TYPE 61 72 73
'GOLPH3L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.93

Table S3109.  Gene #296: 'GOLPH3L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GOLPH3L MUTATED 2 1 2
GOLPH3L WILD-TYPE 68 119 98
'GOLPH3L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.77

Table S3110.  Gene #296: 'GOLPH3L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GOLPH3L MUTATED 2 0 0 1 0 1 0 1 0
GOLPH3L WILD-TYPE 39 26 30 28 39 68 20 13 22
'GOLPH3L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S3111.  Gene #296: 'GOLPH3L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GOLPH3L MUTATED 1 2 1 1
GOLPH3L WILD-TYPE 99 70 71 120
'GOLPH3L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.63

Table S3112.  Gene #296: 'GOLPH3L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GOLPH3L MUTATED 1 3 0 1 0
GOLPH3L WILD-TYPE 58 72 74 118 38
'GOLPH3L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S3113.  Gene #296: 'GOLPH3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GOLPH3L MUTATED 0 1 1 1 2
GOLPH3L WILD-TYPE 51 75 60 70 93
'GOLPH3L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.985 (Fisher's exact test), Q value = 1

Table S3114.  Gene #296: 'GOLPH3L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GOLPH3L MUTATED 2 1 0 0 1 0 0 0 1
GOLPH3L WILD-TYPE 67 47 39 16 52 20 21 38 49
'TSHR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.18

Table S3115.  Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TSHR MUTATED 4 0 0 1 0
TSHR WILD-TYPE 28 18 46 26 23

Figure S975.  Get High-res Image Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TSHR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0672 (Fisher's exact test), Q value = 0.28

Table S3116.  Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TSHR MUTATED 4 1 0
TSHR WILD-TYPE 39 66 36
'TSHR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.21

Table S3117.  Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TSHR MUTATED 2 16 25
TSHR WILD-TYPE 40 157 122

Figure S976.  Get High-res Image Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TSHR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S3118.  Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TSHR MUTATED 13 12 12
TSHR WILD-TYPE 49 61 63
'TSHR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S3119.  Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TSHR MUTATED 7 12 16
TSHR WILD-TYPE 63 108 84
'TSHR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0343 (Fisher's exact test), Q value = 0.2

Table S3120.  Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TSHR MUTATED 4 2 2 4 1 9 3 6 4
TSHR WILD-TYPE 37 24 28 25 38 60 17 8 18

Figure S977.  Get High-res Image Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'TSHR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0051 (Fisher's exact test), Q value = 0.067

Table S3121.  Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TSHR MUTATED 17 12 10 5
TSHR WILD-TYPE 83 60 62 116

Figure S978.  Get High-res Image Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TSHR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S3122.  Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TSHR MUTATED 9 17 13 1 4
TSHR WILD-TYPE 50 58 61 118 34

Figure S979.  Get High-res Image Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TSHR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S3123.  Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TSHR MUTATED 6 15 9 6 7
TSHR WILD-TYPE 45 61 52 65 88
'TSHR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0601 (Fisher's exact test), Q value = 0.26

Table S3124.  Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TSHR MUTATED 10 8 3 4 9 4 1 3 1
TSHR WILD-TYPE 59 40 36 12 44 16 20 35 49
'TSHR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S3125.  Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TSHR MUTATED 3 1 3 2 2 2
TSHR WILD-TYPE 10 15 11 9 9 7
'TSHR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S3126.  Gene #297: 'TSHR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TSHR MUTATED 1 0 1 3 2 1 3 2 0
TSHR WILD-TYPE 10 7 6 6 6 6 8 7 5
'C14ORF102 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.074 (Fisher's exact test), Q value = 0.29

Table S3127.  Gene #298: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C14ORF102 MUTATED 3 0 0 2 0
C14ORF102 WILD-TYPE 29 18 46 25 23
'C14ORF102 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S3128.  Gene #298: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C14ORF102 MUTATED 3 2 0
C14ORF102 WILD-TYPE 40 65 36
'C14ORF102 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00704 (Fisher's exact test), Q value = 0.079

Table S3129.  Gene #298: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C14ORF102 MUTATED 2 2 12
C14ORF102 WILD-TYPE 40 171 135

Figure S980.  Get High-res Image Gene #298: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C14ORF102 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S3130.  Gene #298: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C14ORF102 MUTATED 4 3 5
C14ORF102 WILD-TYPE 58 70 70
'C14ORF102 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S3131.  Gene #298: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C14ORF102 MUTATED 3 6 6
C14ORF102 WILD-TYPE 67 114 94
'C14ORF102 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S3132.  Gene #298: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C14ORF102 MUTATED 4 1 1 1 1 4 2 1 0
C14ORF102 WILD-TYPE 37 25 29 28 38 65 18 13 22
'C14ORF102 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S3133.  Gene #298: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C14ORF102 MUTATED 4 5 3 5
C14ORF102 WILD-TYPE 96 67 69 116
'C14ORF102 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0352 (Fisher's exact test), Q value = 0.2

Table S3134.  Gene #298: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C14ORF102 MUTATED 4 3 5 1 4
C14ORF102 WILD-TYPE 55 72 69 118 34

Figure S981.  Get High-res Image Gene #298: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C14ORF102 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S3135.  Gene #298: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C14ORF102 MUTATED 0 6 5 0 6
C14ORF102 WILD-TYPE 51 70 56 71 89

Figure S982.  Get High-res Image Gene #298: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C14ORF102 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0029 (Fisher's exact test), Q value = 0.047

Table S3136.  Gene #298: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C14ORF102 MUTATED 1 4 2 4 0 1 0 4 1
C14ORF102 WILD-TYPE 68 44 37 12 53 19 21 34 49

Figure S983.  Get High-res Image Gene #298: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C14ORF102 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0961 (Fisher's exact test), Q value = 0.34

Table S3137.  Gene #298: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C14ORF102 MUTATED 0 0 0 1 2 0
C14ORF102 WILD-TYPE 13 16 14 10 9 9
'C14ORF102 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S3138.  Gene #298: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C14ORF102 MUTATED 0 0 1 1 0 0 1 0 0
C14ORF102 WILD-TYPE 11 7 6 8 8 7 10 9 5
'EXOC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S3139.  Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EXOC4 MUTATED 1 0 0 2 0
EXOC4 WILD-TYPE 31 18 46 25 23
'EXOC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.038 (Fisher's exact test), Q value = 0.21

Table S3140.  Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EXOC4 MUTATED 3 0 0
EXOC4 WILD-TYPE 40 67 36

Figure S984.  Get High-res Image Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EXOC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.097

Table S3141.  Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EXOC4 MUTATED 2 3 13
EXOC4 WILD-TYPE 40 170 134

Figure S985.  Get High-res Image Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EXOC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 0.33

Table S3142.  Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EXOC4 MUTATED 4 2 9
EXOC4 WILD-TYPE 58 71 66
'EXOC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S3143.  Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EXOC4 MUTATED 3 5 8
EXOC4 WILD-TYPE 67 115 92
'EXOC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.75

Table S3144.  Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EXOC4 MUTATED 0 2 0 2 3 5 2 1 1
EXOC4 WILD-TYPE 41 24 30 27 36 64 18 13 21
'EXOC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.014

Table S3145.  Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EXOC4 MUTATED 2 11 3 2
EXOC4 WILD-TYPE 98 61 69 119

Figure S986.  Get High-res Image Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EXOC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00034 (Fisher's exact test), Q value = 0.013

Table S3146.  Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EXOC4 MUTATED 1 5 9 0 3
EXOC4 WILD-TYPE 58 70 65 119 35

Figure S987.  Get High-res Image Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EXOC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S3147.  Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EXOC4 MUTATED 3 9 2 0 4
EXOC4 WILD-TYPE 48 67 59 71 91

Figure S988.  Get High-res Image Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EXOC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0577 (Fisher's exact test), Q value = 0.26

Table S3148.  Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EXOC4 MUTATED 3 1 1 4 4 2 0 2 1
EXOC4 WILD-TYPE 66 47 38 12 49 18 21 36 49
'EXOC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S3149.  Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EXOC4 MUTATED 1 0 2 1 0 0
EXOC4 WILD-TYPE 12 16 12 10 11 9
'EXOC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S3150.  Gene #299: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EXOC4 MUTATED 0 0 0 1 1 0 1 1 0
EXOC4 WILD-TYPE 11 7 7 8 7 7 10 8 5
'RPS6KA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S3151.  Gene #300: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RPS6KA3 MUTATED 2 0 0 2 0
RPS6KA3 WILD-TYPE 30 18 46 25 23
'RPS6KA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S3152.  Gene #300: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RPS6KA3 MUTATED 3 1 0
RPS6KA3 WILD-TYPE 40 66 36
'RPS6KA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S3153.  Gene #300: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RPS6KA3 MUTATED 2 2 9
RPS6KA3 WILD-TYPE 40 171 138

Figure S989.  Get High-res Image Gene #300: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RPS6KA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S3154.  Gene #300: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RPS6KA3 MUTATED 2 1 6
RPS6KA3 WILD-TYPE 60 72 69
'RPS6KA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S3155.  Gene #300: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RPS6KA3 MUTATED 2 5 2
RPS6KA3 WILD-TYPE 68 115 98
'RPS6KA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S3156.  Gene #300: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RPS6KA3 MUTATED 0 3 1 2 1 2 0 0 0
RPS6KA3 WILD-TYPE 41 23 29 27 38 67 20 14 22
'RPS6KA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S3157.  Gene #300: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RPS6KA3 MUTATED 2 6 1 4
RPS6KA3 WILD-TYPE 98 66 71 117
'RPS6KA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0315 (Fisher's exact test), Q value = 0.19

Table S3158.  Gene #300: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RPS6KA3 MUTATED 0 2 6 2 3
RPS6KA3 WILD-TYPE 59 73 68 117 35

Figure S990.  Get High-res Image Gene #300: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RPS6KA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S3159.  Gene #300: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RPS6KA3 MUTATED 1 5 0 1 6
RPS6KA3 WILD-TYPE 50 71 61 70 89
'RPS6KA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.63

Table S3160.  Gene #300: 'RPS6KA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RPS6KA3 MUTATED 3 1 0 2 1 1 1 3 1
RPS6KA3 WILD-TYPE 66 47 39 14 52 19 20 35 49
'ZNF438 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S3161.  Gene #301: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF438 MUTATED 1 3 8
ZNF438 WILD-TYPE 41 170 139
'ZNF438 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S3162.  Gene #301: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF438 MUTATED 4 4 2
ZNF438 WILD-TYPE 58 69 73
'ZNF438 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.56

Table S3163.  Gene #301: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF438 MUTATED 2 2 6
ZNF438 WILD-TYPE 68 118 94
'ZNF438 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S3164.  Gene #301: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF438 MUTATED 3 1 0 0 1 4 0 1 0
ZNF438 WILD-TYPE 38 25 30 29 38 65 20 13 22
'ZNF438 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.99

Table S3165.  Gene #301: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF438 MUTATED 3 2 4 3
ZNF438 WILD-TYPE 97 70 68 118
'ZNF438 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S3166.  Gene #301: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF438 MUTATED 2 4 3 1 2
ZNF438 WILD-TYPE 57 71 71 118 36
'ZNF438 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 0.25

Table S3167.  Gene #301: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF438 MUTATED 3 5 2 0 1
ZNF438 WILD-TYPE 48 71 59 71 94
'ZNF438 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0512 (Fisher's exact test), Q value = 0.24

Table S3168.  Gene #301: 'ZNF438 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF438 MUTATED 1 3 1 2 1 2 1 0 0
ZNF438 WILD-TYPE 68 45 38 14 52 18 20 38 50
'MST4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S3169.  Gene #302: 'MST4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MST4 MUTATED 0 3 4
MST4 WILD-TYPE 42 170 143
'MST4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S3170.  Gene #302: 'MST4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MST4 MUTATED 1 2 3
MST4 WILD-TYPE 61 71 72
'MST4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S3171.  Gene #302: 'MST4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MST4 MUTATED 0 2 3
MST4 WILD-TYPE 70 118 97
'MST4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S3172.  Gene #302: 'MST4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MST4 MUTATED 0 0 0 0 0 2 1 1 1
MST4 WILD-TYPE 41 26 30 29 39 67 19 13 21
'MST4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S3173.  Gene #302: 'MST4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MST4 MUTATED 2 2 2 1
MST4 WILD-TYPE 98 70 70 120
'MST4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S3174.  Gene #302: 'MST4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MST4 MUTATED 1 2 3 0 1
MST4 WILD-TYPE 58 73 71 119 37
'MST4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0419 (Fisher's exact test), Q value = 0.22

Table S3175.  Gene #302: 'MST4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MST4 MUTATED 1 4 1 0 0
MST4 WILD-TYPE 50 72 60 71 95

Figure S991.  Get High-res Image Gene #302: 'MST4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MST4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.65

Table S3176.  Gene #302: 'MST4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MST4 MUTATED 1 2 0 1 1 1 0 0 0
MST4 WILD-TYPE 68 46 39 15 52 19 21 38 50
'RIF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S3177.  Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RIF1 MUTATED 5 1 0 2 0
RIF1 WILD-TYPE 27 17 46 25 23

Figure S992.  Get High-res Image Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RIF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S3178.  Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RIF1 MUTATED 6 2 0
RIF1 WILD-TYPE 37 65 36

Figure S993.  Get High-res Image Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RIF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S3179.  Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RIF1 MUTATED 1 8 25
RIF1 WILD-TYPE 41 165 122

Figure S994.  Get High-res Image Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RIF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.65

Table S3180.  Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RIF1 MUTATED 11 7 8
RIF1 WILD-TYPE 51 66 67
'RIF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S3181.  Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RIF1 MUTATED 7 9 16
RIF1 WILD-TYPE 63 111 84
'RIF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S3182.  Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RIF1 MUTATED 4 3 3 1 4 13 4 0 0
RIF1 WILD-TYPE 37 23 27 28 35 56 16 14 22
'RIF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S3183.  Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RIF1 MUTATED 7 10 9 9
RIF1 WILD-TYPE 93 62 63 112
'RIF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00265 (Fisher's exact test), Q value = 0.044

Table S3184.  Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RIF1 MUTATED 4 10 12 3 6
RIF1 WILD-TYPE 55 65 62 116 32

Figure S995.  Get High-res Image Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RIF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00113 (Fisher's exact test), Q value = 0.027

Table S3185.  Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RIF1 MUTATED 5 16 3 1 9
RIF1 WILD-TYPE 46 60 58 70 86

Figure S996.  Get High-res Image Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RIF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0906 (Fisher's exact test), Q value = 0.33

Table S3186.  Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RIF1 MUTATED 8 5 1 2 3 6 1 5 3
RIF1 WILD-TYPE 61 43 38 14 50 14 20 33 47
'RIF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S3187.  Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RIF1 MUTATED 3 2 1 0 3 0
RIF1 WILD-TYPE 10 14 13 11 8 9
'RIF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S3188.  Gene #303: 'RIF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RIF1 MUTATED 1 1 1 0 1 1 2 1 1
RIF1 WILD-TYPE 10 6 6 9 7 6 9 8 4
'INPP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S3189.  Gene #304: 'INPP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
INPP1 MUTATED 1 3 3
INPP1 WILD-TYPE 41 170 144
'INPP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3190.  Gene #304: 'INPP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
INPP1 MUTATED 1 2 2
INPP1 WILD-TYPE 61 71 73
'INPP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S3191.  Gene #304: 'INPP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
INPP1 MUTATED 1 2 3
INPP1 WILD-TYPE 69 118 97
'INPP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S3192.  Gene #304: 'INPP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
INPP1 MUTATED 1 0 1 0 1 2 1 0 0
INPP1 WILD-TYPE 40 26 29 29 38 67 19 14 22
'INPP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S3193.  Gene #304: 'INPP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
INPP1 MUTATED 3 0 2 2
INPP1 WILD-TYPE 97 72 70 119
'INPP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S3194.  Gene #304: 'INPP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
INPP1 MUTATED 1 2 2 2 0
INPP1 WILD-TYPE 58 73 72 117 38
'INPP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.72

Table S3195.  Gene #304: 'INPP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
INPP1 MUTATED 1 3 2 0 1
INPP1 WILD-TYPE 50 73 59 71 94
'INPP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S3196.  Gene #304: 'INPP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
INPP1 MUTATED 2 1 1 1 0 1 1 0 0
INPP1 WILD-TYPE 67 47 38 15 53 19 20 38 50
'SAPS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00067 (Fisher's exact test), Q value = 0.019

Table S3197.  Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SAPS2 MUTATED 1 0 10
SAPS2 WILD-TYPE 41 173 137

Figure S997.  Get High-res Image Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SAPS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0093 (Fisher's exact test), Q value = 0.091

Table S3198.  Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SAPS2 MUTATED 2 0 7
SAPS2 WILD-TYPE 60 73 68

Figure S998.  Get High-res Image Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SAPS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3199.  Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SAPS2 MUTATED 2 3 3
SAPS2 WILD-TYPE 68 117 97
'SAPS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S3200.  Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SAPS2 MUTATED 0 2 0 1 1 3 1 0 0
SAPS2 WILD-TYPE 41 24 30 28 38 66 19 14 22
'SAPS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00757 (Fisher's exact test), Q value = 0.081

Table S3201.  Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SAPS2 MUTATED 0 6 3 2
SAPS2 WILD-TYPE 100 66 69 119

Figure S999.  Get High-res Image Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SAPS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00038 (Fisher's exact test), Q value = 0.013

Table S3202.  Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SAPS2 MUTATED 0 0 8 1 2
SAPS2 WILD-TYPE 59 75 66 118 36

Figure S1000.  Get High-res Image Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SAPS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S3203.  Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SAPS2 MUTATED 0 7 1 0 3
SAPS2 WILD-TYPE 51 69 60 71 92

Figure S1001.  Get High-res Image Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SAPS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0053

Table S3204.  Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SAPS2 MUTATED 1 2 0 5 0 1 0 2 0
SAPS2 WILD-TYPE 68 46 39 11 53 19 21 36 50

Figure S1002.  Get High-res Image Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SAPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S3205.  Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SAPS2 MUTATED 0 0 1 0 3 0
SAPS2 WILD-TYPE 13 16 13 11 8 9

Figure S1003.  Get High-res Image Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SAPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S3206.  Gene #305: 'SAPS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SAPS2 MUTATED 0 0 0 2 1 1 0 0 0
SAPS2 WILD-TYPE 11 7 7 7 7 6 11 9 5
'CEP135 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00818 (Fisher's exact test), Q value = 0.085

Table S3207.  Gene #306: 'CEP135 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CEP135 MUTATED 5 0 0 1 0
CEP135 WILD-TYPE 27 18 46 26 23

Figure S1004.  Get High-res Image Gene #306: 'CEP135 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CEP135 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00716 (Fisher's exact test), Q value = 0.079

Table S3208.  Gene #306: 'CEP135 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CEP135 MUTATED 5 0 1
CEP135 WILD-TYPE 38 67 35

Figure S1005.  Get High-res Image Gene #306: 'CEP135 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CEP135 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S3209.  Gene #306: 'CEP135 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CEP135 MUTATED 2 6 13
CEP135 WILD-TYPE 40 167 134
'CEP135 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3210.  Gene #306: 'CEP135 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CEP135 MUTATED 4 5 6
CEP135 WILD-TYPE 58 68 69
'CEP135 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.98

Table S3211.  Gene #306: 'CEP135 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CEP135 MUTATED 3 8 8
CEP135 WILD-TYPE 67 112 92
'CEP135 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S3212.  Gene #306: 'CEP135 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CEP135 MUTATED 1 0 2 3 1 7 2 1 2
CEP135 WILD-TYPE 40 26 28 26 38 62 18 13 20
'CEP135 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S3213.  Gene #306: 'CEP135 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CEP135 MUTATED 5 4 6 6
CEP135 WILD-TYPE 95 68 66 115
'CEP135 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S3214.  Gene #306: 'CEP135 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CEP135 MUTATED 4 5 6 1 5
CEP135 WILD-TYPE 55 70 68 118 33

Figure S1006.  Get High-res Image Gene #306: 'CEP135 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CEP135 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S3215.  Gene #306: 'CEP135 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CEP135 MUTATED 2 7 3 4 3
CEP135 WILD-TYPE 49 69 58 67 92
'CEP135 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S3216.  Gene #306: 'CEP135 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CEP135 MUTATED 6 2 2 3 2 1 0 2 1
CEP135 WILD-TYPE 63 46 37 13 51 19 21 36 49
'CEP135 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S3217.  Gene #306: 'CEP135 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CEP135 MUTATED 1 0 1 1 2 2
CEP135 WILD-TYPE 12 16 13 10 9 7
'CEP135 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.94

Table S3218.  Gene #306: 'CEP135 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CEP135 MUTATED 2 0 0 0 1 0 2 2 0
CEP135 WILD-TYPE 9 7 7 9 7 7 9 7 5
'PPP2R1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00214 (Fisher's exact test), Q value = 0.039

Table S3219.  Gene #307: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PPP2R1A MUTATED 2 1 11
PPP2R1A WILD-TYPE 40 172 136

Figure S1007.  Get High-res Image Gene #307: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PPP2R1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0747 (Fisher's exact test), Q value = 0.3

Table S3220.  Gene #307: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PPP2R1A MUTATED 2 1 7
PPP2R1A WILD-TYPE 60 72 68
'PPP2R1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S3221.  Gene #307: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PPP2R1A MUTATED 2 3 6
PPP2R1A WILD-TYPE 68 117 94
'PPP2R1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S3222.  Gene #307: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PPP2R1A MUTATED 2 0 2 0 0 6 0 1 0
PPP2R1A WILD-TYPE 39 26 28 29 39 63 20 13 22
'PPP2R1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0974 (Fisher's exact test), Q value = 0.34

Table S3223.  Gene #307: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PPP2R1A MUTATED 1 6 3 4
PPP2R1A WILD-TYPE 99 66 69 117
'PPP2R1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00376 (Fisher's exact test), Q value = 0.055

Table S3224.  Gene #307: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PPP2R1A MUTATED 0 1 9 3 1
PPP2R1A WILD-TYPE 59 74 65 116 37

Figure S1008.  Get High-res Image Gene #307: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S3225.  Gene #307: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PPP2R1A MUTATED 1 7 2 2 2
PPP2R1A WILD-TYPE 50 69 59 69 93
'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00053 (Fisher's exact test), Q value = 0.017

Table S3226.  Gene #307: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PPP2R1A MUTATED 1 3 0 5 0 1 1 1 2
PPP2R1A WILD-TYPE 68 45 39 11 53 19 20 37 48

Figure S1009.  Get High-res Image Gene #307: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S3227.  Gene #307: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PPP2R1A MUTATED 0 1 0 0 2 0
PPP2R1A WILD-TYPE 13 15 14 11 9 9
'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S3228.  Gene #307: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PPP2R1A MUTATED 0 0 0 1 0 0 2 0 0
PPP2R1A WILD-TYPE 11 7 7 8 8 7 9 9 5
'RNF160 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S3229.  Gene #308: 'RNF160 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RNF160 MUTATED 2 0 1 1 0
RNF160 WILD-TYPE 30 18 45 26 23
'RNF160 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S3230.  Gene #308: 'RNF160 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RNF160 MUTATED 3 1 0
RNF160 WILD-TYPE 40 66 36
'RNF160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.25

Table S3231.  Gene #308: 'RNF160 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RNF160 MUTATED 0 5 11
RNF160 WILD-TYPE 42 168 136
'RNF160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S3232.  Gene #308: 'RNF160 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RNF160 MUTATED 4 3 4
RNF160 WILD-TYPE 58 70 71
'RNF160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S3233.  Gene #308: 'RNF160 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RNF160 MUTATED 0 7 5
RNF160 WILD-TYPE 70 113 95
'RNF160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S3234.  Gene #308: 'RNF160 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RNF160 MUTATED 1 1 2 2 0 4 1 0 1
RNF160 WILD-TYPE 40 25 28 27 39 65 19 14 21
'RNF160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S3235.  Gene #308: 'RNF160 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RNF160 MUTATED 5 3 3 5
RNF160 WILD-TYPE 95 69 69 116
'RNF160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S3236.  Gene #308: 'RNF160 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RNF160 MUTATED 2 6 2 3 3
RNF160 WILD-TYPE 57 69 72 116 35
'RNF160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S3237.  Gene #308: 'RNF160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RNF160 MUTATED 4 4 3 0 3
RNF160 WILD-TYPE 47 72 58 71 92
'RNF160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S3238.  Gene #308: 'RNF160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RNF160 MUTATED 1 4 1 0 2 2 2 1 1
RNF160 WILD-TYPE 68 44 38 16 51 18 19 37 49
'RNF160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S3239.  Gene #308: 'RNF160 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RNF160 MUTATED 1 1 0 0 1 0
RNF160 WILD-TYPE 12 15 14 11 10 9
'RNF160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S3240.  Gene #308: 'RNF160 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RNF160 MUTATED 0 1 0 0 0 0 1 0 1
RNF160 WILD-TYPE 11 6 7 9 8 7 10 9 4
'ECM2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.57

Table S3241.  Gene #309: 'ECM2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ECM2 MUTATED 2 1 0 1 0
ECM2 WILD-TYPE 30 17 46 26 23
'ECM2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00981 (Fisher's exact test), Q value = 0.093

Table S3242.  Gene #309: 'ECM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ECM2 MUTATED 4 0 0
ECM2 WILD-TYPE 39 67 36

Figure S1010.  Get High-res Image Gene #309: 'ECM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ECM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.18

Table S3243.  Gene #309: 'ECM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ECM2 MUTATED 1 3 11
ECM2 WILD-TYPE 41 170 136

Figure S1011.  Get High-res Image Gene #309: 'ECM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ECM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.051 (Fisher's exact test), Q value = 0.24

Table S3244.  Gene #309: 'ECM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ECM2 MUTATED 7 1 5
ECM2 WILD-TYPE 55 72 70
'ECM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S3245.  Gene #309: 'ECM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ECM2 MUTATED 3 5 8
ECM2 WILD-TYPE 67 115 92
'ECM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S3246.  Gene #309: 'ECM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ECM2 MUTATED 2 1 0 1 2 6 2 1 1
ECM2 WILD-TYPE 39 25 30 28 37 63 18 13 21
'ECM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.56

Table S3247.  Gene #309: 'ECM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ECM2 MUTATED 2 6 4 5
ECM2 WILD-TYPE 98 66 68 116
'ECM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 0.2

Table S3248.  Gene #309: 'ECM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ECM2 MUTATED 2 2 7 2 4
ECM2 WILD-TYPE 57 73 67 117 34

Figure S1012.  Get High-res Image Gene #309: 'ECM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ECM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S3249.  Gene #309: 'ECM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ECM2 MUTATED 4 6 2 1 3
ECM2 WILD-TYPE 47 70 59 70 92
'ECM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S3250.  Gene #309: 'ECM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ECM2 MUTATED 3 2 0 2 4 1 1 1 2
ECM2 WILD-TYPE 66 46 39 14 49 19 20 37 48
'MSH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.95

Table S3251.  Gene #310: 'MSH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MSH2 MUTATED 1 0 1 2 0
MSH2 WILD-TYPE 31 18 45 25 23
'MSH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S3252.  Gene #310: 'MSH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MSH2 MUTATED 2 1 1
MSH2 WILD-TYPE 41 66 35
'MSH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0296 (Fisher's exact test), Q value = 0.18

Table S3253.  Gene #310: 'MSH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MSH2 MUTATED 4 9 20
MSH2 WILD-TYPE 38 164 127

Figure S1013.  Get High-res Image Gene #310: 'MSH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MSH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.95

Table S3254.  Gene #310: 'MSH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MSH2 MUTATED 10 8 11
MSH2 WILD-TYPE 52 65 64
'MSH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.74

Table S3255.  Gene #310: 'MSH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MSH2 MUTATED 4 12 12
MSH2 WILD-TYPE 66 108 88
'MSH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S3256.  Gene #310: 'MSH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MSH2 MUTATED 2 4 1 3 3 9 3 2 1
MSH2 WILD-TYPE 39 22 29 26 36 60 17 12 21
'MSH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00796 (Fisher's exact test), Q value = 0.084

Table S3257.  Gene #310: 'MSH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MSH2 MUTATED 6 12 10 5
MSH2 WILD-TYPE 94 60 62 116

Figure S1014.  Get High-res Image Gene #310: 'MSH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MSH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00227 (Fisher's exact test), Q value = 0.04

Table S3258.  Gene #310: 'MSH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MSH2 MUTATED 3 10 14 4 2
MSH2 WILD-TYPE 56 65 60 115 36

Figure S1015.  Get High-res Image Gene #310: 'MSH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MSH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0092 (Fisher's exact test), Q value = 0.09

Table S3259.  Gene #310: 'MSH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MSH2 MUTATED 4 15 5 2 6
MSH2 WILD-TYPE 47 61 56 69 89

Figure S1016.  Get High-res Image Gene #310: 'MSH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MSH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S3260.  Gene #310: 'MSH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MSH2 MUTATED 5 7 2 3 6 3 0 3 3
MSH2 WILD-TYPE 64 41 37 13 47 17 21 35 47
'MSH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S3261.  Gene #310: 'MSH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MSH2 MUTATED 0 1 2 0 3 0
MSH2 WILD-TYPE 13 15 12 11 8 9
'MSH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S3262.  Gene #310: 'MSH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MSH2 MUTATED 2 0 0 2 0 1 1 0 0
MSH2 WILD-TYPE 9 7 7 7 8 6 10 9 5
'IL1RAPL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0635 (Fisher's exact test), Q value = 0.27

Table S3263.  Gene #311: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IL1RAPL1 MUTATED 4 0 1 0 0
IL1RAPL1 WILD-TYPE 28 18 45 27 23
'IL1RAPL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S3264.  Gene #311: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IL1RAPL1 MUTATED 3 1 1
IL1RAPL1 WILD-TYPE 40 66 35
'IL1RAPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 0.29

Table S3265.  Gene #311: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IL1RAPL1 MUTATED 4 6 13
IL1RAPL1 WILD-TYPE 38 167 134
'IL1RAPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S3266.  Gene #311: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IL1RAPL1 MUTATED 6 5 7
IL1RAPL1 WILD-TYPE 56 68 68
'IL1RAPL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S3267.  Gene #311: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IL1RAPL1 MUTATED 1 7 9
IL1RAPL1 WILD-TYPE 69 113 91
'IL1RAPL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.22

Table S3268.  Gene #311: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IL1RAPL1 MUTATED 2 1 0 5 0 4 3 0 2
IL1RAPL1 WILD-TYPE 39 25 30 24 39 65 17 14 20

Figure S1017.  Get High-res Image Gene #311: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'IL1RAPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S3269.  Gene #311: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IL1RAPL1 MUTATED 7 6 5 5
IL1RAPL1 WILD-TYPE 93 66 67 116
'IL1RAPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0315 (Fisher's exact test), Q value = 0.19

Table S3270.  Gene #311: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IL1RAPL1 MUTATED 3 6 9 2 3
IL1RAPL1 WILD-TYPE 56 69 65 117 35

Figure S1018.  Get High-res Image Gene #311: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IL1RAPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0515 (Fisher's exact test), Q value = 0.24

Table S3271.  Gene #311: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IL1RAPL1 MUTATED 2 11 4 2 4
IL1RAPL1 WILD-TYPE 49 65 57 69 91
'IL1RAPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S3272.  Gene #311: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IL1RAPL1 MUTATED 4 3 2 5 4 2 1 2 0
IL1RAPL1 WILD-TYPE 65 45 37 11 49 18 20 36 50

Figure S1019.  Get High-res Image Gene #311: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IL1RAPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S3273.  Gene #311: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IL1RAPL1 MUTATED 2 1 1 0 1 1
IL1RAPL1 WILD-TYPE 11 15 13 11 10 8
'IL1RAPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S3274.  Gene #311: 'IL1RAPL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IL1RAPL1 MUTATED 0 0 0 2 0 2 1 1 0
IL1RAPL1 WILD-TYPE 11 7 7 7 8 5 10 8 5
'C6ORF170 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.18

Table S3275.  Gene #312: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C6ORF170 MUTATED 4 0 0 1 0
C6ORF170 WILD-TYPE 28 18 46 26 23

Figure S1020.  Get High-res Image Gene #312: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C6ORF170 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S3276.  Gene #312: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C6ORF170 MUTATED 3 1 1
C6ORF170 WILD-TYPE 40 66 35
'C6ORF170 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S3277.  Gene #312: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C6ORF170 MUTATED 3 5 10
C6ORF170 WILD-TYPE 39 168 137
'C6ORF170 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S3278.  Gene #312: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C6ORF170 MUTATED 7 5 1
C6ORF170 WILD-TYPE 55 68 74

Figure S1021.  Get High-res Image Gene #312: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C6ORF170 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.21

Table S3279.  Gene #312: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C6ORF170 MUTATED 0 7 8
C6ORF170 WILD-TYPE 70 113 92

Figure S1022.  Get High-res Image Gene #312: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C6ORF170 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.999 (Fisher's exact test), Q value = 1

Table S3280.  Gene #312: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C6ORF170 MUTATED 2 1 1 2 2 5 1 0 1
C6ORF170 WILD-TYPE 39 25 29 27 37 64 19 14 21
'C6ORF170 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S3281.  Gene #312: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C6ORF170 MUTATED 3 2 7 6
C6ORF170 WILD-TYPE 97 70 65 115
'C6ORF170 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S3282.  Gene #312: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C6ORF170 MUTATED 5 3 4 3 3
C6ORF170 WILD-TYPE 54 72 70 116 35
'C6ORF170 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.92

Table S3283.  Gene #312: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C6ORF170 MUTATED 1 3 5 3 6
C6ORF170 WILD-TYPE 50 73 56 68 89
'C6ORF170 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S3284.  Gene #312: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C6ORF170 MUTATED 2 5 0 1 4 1 0 3 2
C6ORF170 WILD-TYPE 67 43 39 15 49 19 21 35 48
'C6ORF170 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.21

Table S3285.  Gene #312: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C6ORF170 MUTATED 1 0 0 1 2 3
C6ORF170 WILD-TYPE 12 16 14 10 9 6

Figure S1023.  Get High-res Image Gene #312: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'C6ORF170 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.93

Table S3286.  Gene #312: 'C6ORF170 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C6ORF170 MUTATED 1 0 0 2 0 2 1 1 0
C6ORF170 WILD-TYPE 10 7 7 7 8 5 10 8 5
'STAB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00229 (Fisher's exact test), Q value = 0.04

Table S3287.  Gene #313: 'STAB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
STAB2 MUTATED 7 0 0 3 1
STAB2 WILD-TYPE 25 18 46 24 22

Figure S1024.  Get High-res Image Gene #313: 'STAB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'STAB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00731 (Fisher's exact test), Q value = 0.08

Table S3288.  Gene #313: 'STAB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
STAB2 MUTATED 8 2 1
STAB2 WILD-TYPE 35 65 35

Figure S1025.  Get High-res Image Gene #313: 'STAB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'STAB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.017

Table S3289.  Gene #313: 'STAB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STAB2 MUTATED 3 6 23
STAB2 WILD-TYPE 39 167 124

Figure S1026.  Get High-res Image Gene #313: 'STAB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STAB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0972 (Fisher's exact test), Q value = 0.34

Table S3290.  Gene #313: 'STAB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STAB2 MUTATED 9 3 9
STAB2 WILD-TYPE 53 70 66
'STAB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S3291.  Gene #313: 'STAB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STAB2 MUTATED 7 7 12
STAB2 WILD-TYPE 63 113 88
'STAB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S3292.  Gene #313: 'STAB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STAB2 MUTATED 6 2 2 1 6 6 1 2 0
STAB2 WILD-TYPE 35 24 28 28 33 63 19 12 22
'STAB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0985 (Fisher's exact test), Q value = 0.34

Table S3293.  Gene #313: 'STAB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STAB2 MUTATED 4 10 5 13
STAB2 WILD-TYPE 96 62 67 108
'STAB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S3294.  Gene #313: 'STAB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STAB2 MUTATED 5 5 9 5 8
STAB2 WILD-TYPE 54 70 65 114 30

Figure S1027.  Get High-res Image Gene #313: 'STAB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STAB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S3295.  Gene #313: 'STAB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STAB2 MUTATED 4 7 5 3 12
STAB2 WILD-TYPE 47 69 56 68 83
'STAB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S3296.  Gene #313: 'STAB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STAB2 MUTATED 3 4 3 2 4 3 1 7 4
STAB2 WILD-TYPE 66 44 36 14 49 17 20 31 46
'STAB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S3297.  Gene #313: 'STAB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
STAB2 MUTATED 0 2 2 1 1 1
STAB2 WILD-TYPE 13 14 12 10 10 8
'STAB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S3298.  Gene #313: 'STAB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
STAB2 MUTATED 2 1 0 1 1 0 1 0 1
STAB2 WILD-TYPE 9 6 7 8 7 7 10 9 4
'ERBB3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.61

Table S3299.  Gene #314: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ERBB3 MUTATED 5 0 2 2 1
ERBB3 WILD-TYPE 27 18 44 25 22
'ERBB3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S3300.  Gene #314: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ERBB3 MUTATED 6 3 1
ERBB3 WILD-TYPE 37 64 35
'ERBB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00076 (Fisher's exact test), Q value = 0.021

Table S3301.  Gene #314: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ERBB3 MUTATED 3 4 19
ERBB3 WILD-TYPE 39 169 128

Figure S1028.  Get High-res Image Gene #314: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ERBB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.21

Table S3302.  Gene #314: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ERBB3 MUTATED 7 1 6
ERBB3 WILD-TYPE 55 72 69

Figure S1029.  Get High-res Image Gene #314: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ERBB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.95

Table S3303.  Gene #314: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ERBB3 MUTATED 5 8 10
ERBB3 WILD-TYPE 65 112 90
'ERBB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S3304.  Gene #314: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ERBB3 MUTATED 1 1 3 2 5 7 3 1 0
ERBB3 WILD-TYPE 40 25 27 27 34 62 17 13 22
'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 0.29

Table S3305.  Gene #314: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ERBB3 MUTATED 2 8 5 10
ERBB3 WILD-TYPE 98 64 67 111
'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.54

Table S3306.  Gene #314: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ERBB3 MUTATED 4 2 7 7 5
ERBB3 WILD-TYPE 55 73 67 112 33
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S3307.  Gene #314: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ERBB3 MUTATED 1 8 4 3 8
ERBB3 WILD-TYPE 50 68 57 68 87
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S3308.  Gene #314: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ERBB3 MUTATED 5 4 4 0 3 2 1 5 0
ERBB3 WILD-TYPE 64 44 35 16 50 18 20 33 50
'ZNF708 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S3309.  Gene #315: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF708 MUTATED 1 0 0 2 0
ZNF708 WILD-TYPE 31 18 46 25 23
'ZNF708 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3310.  Gene #315: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF708 MUTATED 1 1 1
ZNF708 WILD-TYPE 42 66 35
'ZNF708 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S3311.  Gene #315: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF708 MUTATED 1 3 8
ZNF708 WILD-TYPE 41 170 139
'ZNF708 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.99

Table S3312.  Gene #315: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF708 MUTATED 3 4 2
ZNF708 WILD-TYPE 59 69 73
'ZNF708 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S3313.  Gene #315: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF708 MUTATED 1 5 3
ZNF708 WILD-TYPE 69 115 97
'ZNF708 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S3314.  Gene #315: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF708 MUTATED 0 1 2 1 2 3 0 0 0
ZNF708 WILD-TYPE 41 25 28 28 37 66 20 14 22
'ZNF708 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S3315.  Gene #315: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF708 MUTATED 4 2 3 3
ZNF708 WILD-TYPE 96 70 69 118
'ZNF708 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S3316.  Gene #315: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF708 MUTATED 0 5 4 2 1
ZNF708 WILD-TYPE 59 70 70 117 37
'ZNF708 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S3317.  Gene #315: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF708 MUTATED 4 3 2 1 1
ZNF708 WILD-TYPE 47 73 59 70 94
'ZNF708 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S3318.  Gene #315: 'ZNF708 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF708 MUTATED 2 2 2 0 3 2 0 0 0
ZNF708 WILD-TYPE 67 46 37 16 50 18 21 38 50
'MBTD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S3319.  Gene #316: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MBTD1 MUTATED 0 3 6
MBTD1 WILD-TYPE 42 170 141
'MBTD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S3320.  Gene #316: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MBTD1 MUTATED 3 1 5
MBTD1 WILD-TYPE 59 72 70
'MBTD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S3321.  Gene #316: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MBTD1 MUTATED 1 2 4
MBTD1 WILD-TYPE 69 118 96
'MBTD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S3322.  Gene #316: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MBTD1 MUTATED 1 2 0 0 1 3 0 0 0
MBTD1 WILD-TYPE 40 24 30 29 38 66 20 14 22
'MBTD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00606 (Fisher's exact test), Q value = 0.073

Table S3323.  Gene #316: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MBTD1 MUTATED 1 5 3 0
MBTD1 WILD-TYPE 99 67 69 121

Figure S1030.  Get High-res Image Gene #316: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MBTD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00682 (Fisher's exact test), Q value = 0.077

Table S3324.  Gene #316: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MBTD1 MUTATED 1 2 6 0 0
MBTD1 WILD-TYPE 58 73 68 119 38

Figure S1031.  Get High-res Image Gene #316: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MBTD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0874 (Fisher's exact test), Q value = 0.32

Table S3325.  Gene #316: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MBTD1 MUTATED 1 5 2 0 1
MBTD1 WILD-TYPE 50 71 59 71 94
'MBTD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S3326.  Gene #316: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MBTD1 MUTATED 2 3 0 2 1 0 0 1 0
MBTD1 WILD-TYPE 67 45 39 14 52 20 21 37 50
'MBTD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.6

Table S3327.  Gene #316: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MBTD1 MUTATED 0 0 1 1 2 0
MBTD1 WILD-TYPE 13 16 13 10 9 9
'MBTD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S3328.  Gene #316: 'MBTD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MBTD1 MUTATED 0 0 1 1 0 0 2 0 0
MBTD1 WILD-TYPE 11 7 6 8 8 7 9 9 5
'ZNF189 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S3329.  Gene #317: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF189 MUTATED 1 7 8
ZNF189 WILD-TYPE 41 166 139
'ZNF189 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S3330.  Gene #317: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF189 MUTATED 7 5 4
ZNF189 WILD-TYPE 55 68 71
'ZNF189 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.5

Table S3331.  Gene #317: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF189 MUTATED 2 5 9
ZNF189 WILD-TYPE 68 115 91
'ZNF189 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S3332.  Gene #317: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF189 MUTATED 4 1 0 2 0 5 1 2 1
ZNF189 WILD-TYPE 37 25 30 27 39 64 19 12 21
'ZNF189 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S3333.  Gene #317: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF189 MUTATED 5 3 6 3
ZNF189 WILD-TYPE 95 69 66 118
'ZNF189 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S3334.  Gene #317: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF189 MUTATED 5 6 3 2 1
ZNF189 WILD-TYPE 54 69 71 117 37
'ZNF189 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S3335.  Gene #317: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF189 MUTATED 4 5 4 0 4
ZNF189 WILD-TYPE 47 71 57 71 91
'ZNF189 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S3336.  Gene #317: 'ZNF189 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF189 MUTATED 5 5 1 0 1 1 0 1 3
ZNF189 WILD-TYPE 64 43 38 16 52 19 21 37 47
'ACP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3337.  Gene #318: 'ACP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ACP6 MUTATED 0 3 3
ACP6 WILD-TYPE 42 170 144
'ACP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S3338.  Gene #318: 'ACP6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ACP6 MUTATED 3 1 2
ACP6 WILD-TYPE 59 72 73
'ACP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S3339.  Gene #318: 'ACP6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ACP6 MUTATED 1 1 2
ACP6 WILD-TYPE 69 119 98
'ACP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S3340.  Gene #318: 'ACP6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ACP6 MUTATED 0 0 0 0 1 2 0 1 0
ACP6 WILD-TYPE 41 26 30 29 38 67 20 13 22
'ACP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S3341.  Gene #318: 'ACP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ACP6 MUTATED 3 2 1 0
ACP6 WILD-TYPE 97 70 71 121
'ACP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S3342.  Gene #318: 'ACP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ACP6 MUTATED 1 2 3 0 0
ACP6 WILD-TYPE 58 73 71 119 38
'ACP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S3343.  Gene #318: 'ACP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ACP6 MUTATED 0 4 2 0 0
ACP6 WILD-TYPE 51 72 59 71 95

Figure S1032.  Get High-res Image Gene #318: 'ACP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ACP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S3344.  Gene #318: 'ACP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ACP6 MUTATED 2 0 1 1 2 0 0 0 0
ACP6 WILD-TYPE 67 48 38 15 51 20 21 38 50
'PRKCI MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0296 (Fisher's exact test), Q value = 0.18

Table S3345.  Gene #319: 'PRKCI MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PRKCI MUTATED 4 0 0 1 0
PRKCI WILD-TYPE 28 18 46 26 23

Figure S1033.  Get High-res Image Gene #319: 'PRKCI MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PRKCI MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S3346.  Gene #319: 'PRKCI MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PRKCI MUTATED 3 1 1
PRKCI WILD-TYPE 40 66 35
'PRKCI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.098

Table S3347.  Gene #319: 'PRKCI MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRKCI MUTATED 0 4 13
PRKCI WILD-TYPE 42 169 134

Figure S1034.  Get High-res Image Gene #319: 'PRKCI MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PRKCI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.17

Table S3348.  Gene #319: 'PRKCI MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRKCI MUTATED 3 1 9
PRKCI WILD-TYPE 59 72 66

Figure S1035.  Get High-res Image Gene #319: 'PRKCI MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PRKCI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.55

Table S3349.  Gene #319: 'PRKCI MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRKCI MUTATED 1 7 7
PRKCI WILD-TYPE 69 113 93
'PRKCI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S3350.  Gene #319: 'PRKCI MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRKCI MUTATED 1 1 2 1 0 5 2 1 2
PRKCI WILD-TYPE 40 25 28 28 39 64 18 13 20
'PRKCI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.097

Table S3351.  Gene #319: 'PRKCI MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRKCI MUTATED 2 9 1 6
PRKCI WILD-TYPE 98 63 71 115

Figure S1036.  Get High-res Image Gene #319: 'PRKCI MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PRKCI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S3352.  Gene #319: 'PRKCI MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRKCI MUTATED 2 4 6 3 3
PRKCI WILD-TYPE 57 71 68 116 35
'PRKCI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S3353.  Gene #319: 'PRKCI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRKCI MUTATED 3 6 1 2 6
PRKCI WILD-TYPE 48 70 60 69 89
'PRKCI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S3354.  Gene #319: 'PRKCI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRKCI MUTATED 4 1 1 3 3 1 0 3 2
PRKCI WILD-TYPE 65 47 38 13 50 19 21 35 48
'ANKRD50 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.17

Table S3355.  Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ANKRD50 MUTATED 4 0 0 2 0
ANKRD50 WILD-TYPE 28 18 46 25 23

Figure S1037.  Get High-res Image Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ANKRD50 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 0.13

Table S3356.  Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ANKRD50 MUTATED 5 1 0
ANKRD50 WILD-TYPE 38 66 36

Figure S1038.  Get High-res Image Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ANKRD50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00051 (Fisher's exact test), Q value = 0.016

Table S3357.  Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ANKRD50 MUTATED 1 1 13
ANKRD50 WILD-TYPE 41 172 134

Figure S1039.  Get High-res Image Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ANKRD50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 0.24

Table S3358.  Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ANKRD50 MUTATED 2 0 5
ANKRD50 WILD-TYPE 60 73 70

Figure S1040.  Get High-res Image Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ANKRD50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.99

Table S3359.  Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ANKRD50 MUTATED 4 4 4
ANKRD50 WILD-TYPE 66 116 96
'ANKRD50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S3360.  Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ANKRD50 MUTATED 0 1 3 1 3 4 0 0 0
ANKRD50 WILD-TYPE 41 25 27 28 36 65 20 14 22
'ANKRD50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S3361.  Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ANKRD50 MUTATED 1 5 2 7
ANKRD50 WILD-TYPE 99 67 70 114
'ANKRD50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S3362.  Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ANKRD50 MUTATED 0 1 7 1 6
ANKRD50 WILD-TYPE 59 74 67 118 32

Figure S1041.  Get High-res Image Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKRD50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00244 (Fisher's exact test), Q value = 0.042

Table S3363.  Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ANKRD50 MUTATED 0 6 0 0 7
ANKRD50 WILD-TYPE 51 70 61 71 88

Figure S1042.  Get High-res Image Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ANKRD50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00211 (Fisher's exact test), Q value = 0.039

Table S3364.  Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ANKRD50 MUTATED 1 1 0 3 1 1 1 5 0
ANKRD50 WILD-TYPE 68 47 39 13 52 19 20 33 50

Figure S1043.  Get High-res Image Gene #320: 'ANKRD50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IL12RB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0754 (Fisher's exact test), Q value = 0.3

Table S3365.  Gene #321: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IL12RB2 MUTATED 3 0 0 2 0
IL12RB2 WILD-TYPE 29 18 46 25 23
'IL12RB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S3366.  Gene #321: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IL12RB2 MUTATED 2 2 1
IL12RB2 WILD-TYPE 41 65 35
'IL12RB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00217 (Fisher's exact test), Q value = 0.039

Table S3367.  Gene #321: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IL12RB2 MUTATED 2 1 11
IL12RB2 WILD-TYPE 40 172 136

Figure S1044.  Get High-res Image Gene #321: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IL12RB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S3368.  Gene #321: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IL12RB2 MUTATED 3 1 5
IL12RB2 WILD-TYPE 59 72 70
'IL12RB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S3369.  Gene #321: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IL12RB2 MUTATED 1 6 5
IL12RB2 WILD-TYPE 69 114 95
'IL12RB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.992 (Fisher's exact test), Q value = 1

Table S3370.  Gene #321: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IL12RB2 MUTATED 1 1 2 1 1 4 1 0 1
IL12RB2 WILD-TYPE 40 25 28 28 38 65 19 14 21
'IL12RB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S3371.  Gene #321: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IL12RB2 MUTATED 2 4 5 3
IL12RB2 WILD-TYPE 98 68 67 118
'IL12RB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S3372.  Gene #321: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IL12RB2 MUTATED 1 2 6 3 2
IL12RB2 WILD-TYPE 58 73 68 116 36
'IL12RB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.63

Table S3373.  Gene #321: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IL12RB2 MUTATED 1 6 1 3 2
IL12RB2 WILD-TYPE 50 70 60 68 93
'IL12RB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S3374.  Gene #321: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IL12RB2 MUTATED 2 4 0 2 3 1 0 1 0
IL12RB2 WILD-TYPE 67 44 39 14 50 19 21 37 50
'IL12RB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0065 (Fisher's exact test), Q value = 0.075

Table S3375.  Gene #321: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IL12RB2 MUTATED 0 0 0 0 3 0
IL12RB2 WILD-TYPE 13 16 14 11 8 9

Figure S1045.  Get High-res Image Gene #321: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'IL12RB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S3376.  Gene #321: 'IL12RB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IL12RB2 MUTATED 0 0 0 1 0 0 2 0 0
IL12RB2 WILD-TYPE 11 7 7 8 8 7 9 9 5
'GPNMB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.53

Table S3377.  Gene #322: 'GPNMB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GPNMB MUTATED 0 5 8
GPNMB WILD-TYPE 42 168 139
'GPNMB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S3378.  Gene #322: 'GPNMB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GPNMB MUTATED 3 5 3
GPNMB WILD-TYPE 59 68 72
'GPNMB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 0.33

Table S3379.  Gene #322: 'GPNMB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GPNMB MUTATED 0 5 6
GPNMB WILD-TYPE 70 115 94
'GPNMB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S3380.  Gene #322: 'GPNMB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GPNMB MUTATED 2 1 0 2 0 3 1 0 2
GPNMB WILD-TYPE 39 25 30 27 39 66 19 14 20
'GPNMB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.73

Table S3381.  Gene #322: 'GPNMB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GPNMB MUTATED 5 2 4 2
GPNMB WILD-TYPE 95 70 68 119
'GPNMB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S3382.  Gene #322: 'GPNMB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GPNMB MUTATED 3 5 3 1 1
GPNMB WILD-TYPE 56 70 71 118 37
'GPNMB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S3383.  Gene #322: 'GPNMB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GPNMB MUTATED 2 6 2 1 2
GPNMB WILD-TYPE 49 70 59 70 93
'GPNMB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0467 (Fisher's exact test), Q value = 0.23

Table S3384.  Gene #322: 'GPNMB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GPNMB MUTATED 1 4 0 2 2 2 1 1 0
GPNMB WILD-TYPE 68 44 39 14 51 18 20 37 50

Figure S1046.  Get High-res Image Gene #322: 'GPNMB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GLI2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S3385.  Gene #323: 'GLI2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GLI2 MUTATED 3 6 11
GLI2 WILD-TYPE 39 167 136
'GLI2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0901 (Fisher's exact test), Q value = 0.33

Table S3386.  Gene #323: 'GLI2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GLI2 MUTATED 9 6 3
GLI2 WILD-TYPE 53 67 72
'GLI2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S3387.  Gene #323: 'GLI2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GLI2 MUTATED 5 6 9
GLI2 WILD-TYPE 65 114 91
'GLI2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S3388.  Gene #323: 'GLI2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GLI2 MUTATED 3 1 2 2 2 9 0 0 1
GLI2 WILD-TYPE 38 25 28 27 37 60 20 14 21
'GLI2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00172 (Fisher's exact test), Q value = 0.034

Table S3389.  Gene #323: 'GLI2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GLI2 MUTATED 4 6 9 1
GLI2 WILD-TYPE 96 66 63 120

Figure S1047.  Get High-res Image Gene #323: 'GLI2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GLI2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0065

Table S3390.  Gene #323: 'GLI2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GLI2 MUTATED 6 3 10 0 1
GLI2 WILD-TYPE 53 72 64 119 37

Figure S1048.  Get High-res Image Gene #323: 'GLI2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GLI2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.34

Table S3391.  Gene #323: 'GLI2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GLI2 MUTATED 4 8 4 1 3
GLI2 WILD-TYPE 47 68 57 70 92
'GLI2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0729 (Fisher's exact test), Q value = 0.29

Table S3392.  Gene #323: 'GLI2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GLI2 MUTATED 8 4 0 2 2 1 1 2 0
GLI2 WILD-TYPE 61 44 39 14 51 19 20 36 50
'GLI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S3393.  Gene #323: 'GLI2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GLI2 MUTATED 1 1 2 1 1 0
GLI2 WILD-TYPE 12 15 12 10 10 9
'GLI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S3394.  Gene #323: 'GLI2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GLI2 MUTATED 1 0 1 1 1 0 2 0 0
GLI2 WILD-TYPE 10 7 6 8 7 7 9 9 5
'OR51E1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.92

Table S3395.  Gene #324: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR51E1 MUTATED 1 5 7
OR51E1 WILD-TYPE 41 168 140
'OR51E1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.83

Table S3396.  Gene #324: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR51E1 MUTATED 2 3 6
OR51E1 WILD-TYPE 60 70 69
'OR51E1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S3397.  Gene #324: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR51E1 MUTATED 2 4 6
OR51E1 WILD-TYPE 68 116 94
'OR51E1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.95

Table S3398.  Gene #324: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR51E1 MUTATED 1 0 0 3 2 4 1 0 1
OR51E1 WILD-TYPE 40 26 30 26 37 65 19 14 21
'OR51E1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S3399.  Gene #324: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR51E1 MUTATED 4 5 2 2
OR51E1 WILD-TYPE 96 67 70 119
'OR51E1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0812 (Fisher's exact test), Q value = 0.31

Table S3400.  Gene #324: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR51E1 MUTATED 3 2 6 1 1
OR51E1 WILD-TYPE 56 73 68 118 37
'OR51E1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.92

Table S3401.  Gene #324: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR51E1 MUTATED 1 5 2 3 2
OR51E1 WILD-TYPE 50 71 59 68 93
'OR51E1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0115 (Fisher's exact test), Q value = 0.1

Table S3402.  Gene #324: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR51E1 MUTATED 2 0 0 2 6 0 1 2 0
OR51E1 WILD-TYPE 67 48 39 14 47 20 20 36 50

Figure S1049.  Get High-res Image Gene #324: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OR51E1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S3403.  Gene #324: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR51E1 MUTATED 1 0 1 0 0 1
OR51E1 WILD-TYPE 12 16 13 11 11 8
'OR51E1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.99

Table S3404.  Gene #324: 'OR51E1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR51E1 MUTATED 0 0 0 1 1 0 0 1 0
OR51E1 WILD-TYPE 11 7 7 8 7 7 11 8 5
'AGFG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S3405.  Gene #325: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AGFG1 MUTATED 0 0 2 2 0
AGFG1 WILD-TYPE 32 18 44 25 23
'AGFG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S3406.  Gene #325: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AGFG1 MUTATED 1 1 2
AGFG1 WILD-TYPE 42 66 34
'AGFG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S3407.  Gene #325: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AGFG1 MUTATED 3 4 8
AGFG1 WILD-TYPE 39 169 139
'AGFG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S3408.  Gene #325: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AGFG1 MUTATED 4 2 5
AGFG1 WILD-TYPE 58 71 70
'AGFG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S3409.  Gene #325: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AGFG1 MUTATED 3 8 3
AGFG1 WILD-TYPE 67 112 97
'AGFG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.46

Table S3410.  Gene #325: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AGFG1 MUTATED 0 3 1 4 2 3 1 0 0
AGFG1 WILD-TYPE 41 23 29 25 37 66 19 14 22
'AGFG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S3411.  Gene #325: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AGFG1 MUTATED 2 4 4 5
AGFG1 WILD-TYPE 98 68 68 116
'AGFG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S3412.  Gene #325: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AGFG1 MUTATED 1 3 6 4 1
AGFG1 WILD-TYPE 58 72 68 115 37
'AGFG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S3413.  Gene #325: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AGFG1 MUTATED 1 7 1 2 3
AGFG1 WILD-TYPE 50 69 60 69 92
'AGFG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00968 (Fisher's exact test), Q value = 0.093

Table S3414.  Gene #325: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AGFG1 MUTATED 2 3 0 2 0 3 0 0 4
AGFG1 WILD-TYPE 67 45 39 14 53 17 21 38 46

Figure S1050.  Get High-res Image Gene #325: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AGFG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S3415.  Gene #325: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AGFG1 MUTATED 0 1 0 0 2 0
AGFG1 WILD-TYPE 13 15 14 11 9 9
'AGFG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3416.  Gene #325: 'AGFG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AGFG1 MUTATED 1 0 0 1 0 0 1 0 0
AGFG1 WILD-TYPE 10 7 7 8 8 7 10 9 5
'NRAS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 0.34

Table S3417.  Gene #326: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NRAS MUTATED 0 1 5 5 3
NRAS WILD-TYPE 32 17 41 22 20
'NRAS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S3418.  Gene #326: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NRAS MUTATED 2 9 3
NRAS WILD-TYPE 41 58 33
'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S3419.  Gene #326: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NRAS MUTATED 5 19 9
NRAS WILD-TYPE 37 154 138
'NRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.95

Table S3420.  Gene #326: 'NRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NRAS MUTATED 5 8 5
NRAS WILD-TYPE 57 65 70
'NRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S3421.  Gene #326: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NRAS MUTATED 7 14 9
NRAS WILD-TYPE 63 106 91
'NRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S3422.  Gene #326: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NRAS MUTATED 3 3 5 6 3 4 2 2 2
NRAS WILD-TYPE 38 23 25 23 36 65 18 12 20
'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S3423.  Gene #326: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NRAS MUTATED 10 7 5 10
NRAS WILD-TYPE 90 65 67 111
'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S3424.  Gene #326: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NRAS MUTATED 4 8 6 12 2
NRAS WILD-TYPE 55 67 68 107 36
'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S3425.  Gene #326: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NRAS MUTATED 6 8 4 5 8
NRAS WILD-TYPE 45 68 57 66 87
'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S3426.  Gene #326: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NRAS MUTATED 5 4 3 1 7 2 1 2 6
NRAS WILD-TYPE 64 44 36 15 46 18 20 36 44
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S3427.  Gene #326: 'NRAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NRAS MUTATED 2 1 1 1 0 0
NRAS WILD-TYPE 11 15 13 10 11 9
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S3428.  Gene #326: 'NRAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NRAS MUTATED 0 1 1 1 0 0 1 1 0
NRAS WILD-TYPE 11 6 6 8 8 7 10 8 5
'MPO MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.25

Table S3429.  Gene #327: 'MPO MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MPO MUTATED 3 0 0 0 0
MPO WILD-TYPE 29 18 46 27 23
'MPO MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S3430.  Gene #327: 'MPO MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MPO MUTATED 2 0 1
MPO WILD-TYPE 41 67 35
'MPO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S3431.  Gene #327: 'MPO MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MPO MUTATED 0 3 8
MPO WILD-TYPE 42 170 139
'MPO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.098

Table S3432.  Gene #327: 'MPO MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MPO MUTATED 6 0 2
MPO WILD-TYPE 56 73 73

Figure S1051.  Get High-res Image Gene #327: 'MPO MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MPO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.094

Table S3433.  Gene #327: 'MPO MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MPO MUTATED 3 0 6
MPO WILD-TYPE 67 120 94

Figure S1052.  Get High-res Image Gene #327: 'MPO MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MPO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.65

Table S3434.  Gene #327: 'MPO MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MPO MUTATED 2 0 0 0 0 4 1 0 2
MPO WILD-TYPE 39 26 30 29 39 65 19 14 20
'MPO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S3435.  Gene #327: 'MPO MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MPO MUTATED 2 3 4 3
MPO WILD-TYPE 98 69 68 118
'MPO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0482 (Fisher's exact test), Q value = 0.24

Table S3436.  Gene #327: 'MPO MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MPO MUTATED 5 3 1 1 2
MPO WILD-TYPE 54 72 73 118 36

Figure S1053.  Get High-res Image Gene #327: 'MPO MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MPO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.65

Table S3437.  Gene #327: 'MPO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MPO MUTATED 0 3 4 1 4
MPO WILD-TYPE 51 73 57 70 91
'MPO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0759 (Fisher's exact test), Q value = 0.3

Table S3438.  Gene #327: 'MPO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MPO MUTATED 0 3 0 1 5 0 1 1 1
MPO WILD-TYPE 69 45 39 15 48 20 20 37 49
'MPO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0674 (Fisher's exact test), Q value = 0.28

Table S3439.  Gene #327: 'MPO MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MPO MUTATED 0 3 0 0 0 0
MPO WILD-TYPE 13 13 14 11 11 9
'MPO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00169 (Fisher's exact test), Q value = 0.034

Table S3440.  Gene #327: 'MPO MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MPO MUTATED 0 3 0 0 0 0 0 0 0
MPO WILD-TYPE 11 4 7 9 8 7 11 9 5

Figure S1054.  Get High-res Image Gene #327: 'MPO MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TRRAP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0058 (Fisher's exact test), Q value = 0.072

Table S3441.  Gene #328: 'TRRAP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TRRAP MUTATED 8 0 1 2 1
TRRAP WILD-TYPE 24 18 45 25 22

Figure S1055.  Get High-res Image Gene #328: 'TRRAP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRRAP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0425 (Fisher's exact test), Q value = 0.22

Table S3442.  Gene #328: 'TRRAP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TRRAP MUTATED 7 2 3
TRRAP WILD-TYPE 36 65 33

Figure S1056.  Get High-res Image Gene #328: 'TRRAP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TRRAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S3443.  Gene #328: 'TRRAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRRAP MUTATED 3 16 29
TRRAP WILD-TYPE 39 157 118

Figure S1057.  Get High-res Image Gene #328: 'TRRAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRRAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0817 (Fisher's exact test), Q value = 0.31

Table S3444.  Gene #328: 'TRRAP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRRAP MUTATED 8 8 18
TRRAP WILD-TYPE 54 65 57
'TRRAP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S3445.  Gene #328: 'TRRAP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRRAP MUTATED 6 16 19
TRRAP WILD-TYPE 64 104 81
'TRRAP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.54

Table S3446.  Gene #328: 'TRRAP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRRAP MUTATED 2 2 5 5 5 16 3 2 1
TRRAP WILD-TYPE 39 24 25 24 34 53 17 12 21
'TRRAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0908 (Fisher's exact test), Q value = 0.33

Table S3447.  Gene #328: 'TRRAP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRRAP MUTATED 7 14 11 17
TRRAP WILD-TYPE 93 58 61 104
'TRRAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0199 (Fisher's exact test), Q value = 0.14

Table S3448.  Gene #328: 'TRRAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRRAP MUTATED 5 9 18 10 7
TRRAP WILD-TYPE 54 66 56 109 31

Figure S1058.  Get High-res Image Gene #328: 'TRRAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRRAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.56

Table S3449.  Gene #328: 'TRRAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRRAP MUTATED 9 13 6 5 15
TRRAP WILD-TYPE 42 63 55 66 80
'TRRAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S3450.  Gene #328: 'TRRAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRRAP MUTATED 10 7 3 5 7 3 2 7 4
TRRAP WILD-TYPE 59 41 36 11 46 17 19 31 46
'TRRAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.5

Table S3451.  Gene #328: 'TRRAP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TRRAP MUTATED 2 1 2 0 4 2
TRRAP WILD-TYPE 11 15 12 11 7 7
'TRRAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S3452.  Gene #328: 'TRRAP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TRRAP MUTATED 2 1 0 2 1 1 3 0 1
TRRAP WILD-TYPE 9 6 7 7 7 6 8 9 4
'OR11G2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S3453.  Gene #329: 'OR11G2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR11G2 MUTATED 1 3 1
OR11G2 WILD-TYPE 41 170 146
'OR11G2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S3454.  Gene #329: 'OR11G2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR11G2 MUTATED 1 3 0
OR11G2 WILD-TYPE 61 70 75
'OR11G2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S3455.  Gene #329: 'OR11G2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR11G2 MUTATED 0 2 3
OR11G2 WILD-TYPE 70 118 97
'OR11G2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S3456.  Gene #329: 'OR11G2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR11G2 MUTATED 0 0 0 1 1 2 0 0 1
OR11G2 WILD-TYPE 41 26 30 28 38 67 20 14 21
'OR11G2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S3457.  Gene #329: 'OR11G2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR11G2 MUTATED 2 0 2 1
OR11G2 WILD-TYPE 98 72 70 120
'OR11G2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0767 (Fisher's exact test), Q value = 0.3

Table S3458.  Gene #329: 'OR11G2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR11G2 MUTATED 2 2 0 0 1
OR11G2 WILD-TYPE 57 73 74 119 37
'OR11G2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.96

Table S3459.  Gene #329: 'OR11G2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR11G2 MUTATED 1 1 1 1 0
OR11G2 WILD-TYPE 50 75 60 70 95
'OR11G2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.99

Table S3460.  Gene #329: 'OR11G2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR11G2 MUTATED 2 0 0 0 2 0 0 0 0
OR11G2 WILD-TYPE 67 48 39 16 51 20 21 38 50
'TRIM23 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0542 (Fisher's exact test), Q value = 0.25

Table S3461.  Gene #330: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TRIM23 MUTATED 3 0 0 0 0
TRIM23 WILD-TYPE 29 18 46 27 23
'TRIM23 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S3462.  Gene #330: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TRIM23 MUTATED 2 0 1
TRIM23 WILD-TYPE 41 67 35
'TRIM23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S3463.  Gene #330: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRIM23 MUTATED 1 4 6
TRIM23 WILD-TYPE 41 169 141
'TRIM23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S3464.  Gene #330: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRIM23 MUTATED 0 4 4
TRIM23 WILD-TYPE 62 69 71
'TRIM23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S3465.  Gene #330: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRIM23 MUTATED 0 5 3
TRIM23 WILD-TYPE 70 115 97
'TRIM23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.62

Table S3466.  Gene #330: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRIM23 MUTATED 1 0 0 3 0 2 1 0 1
TRIM23 WILD-TYPE 40 26 30 26 39 67 19 14 21
'TRIM23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.91

Table S3467.  Gene #330: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRIM23 MUTATED 2 4 2 3
TRIM23 WILD-TYPE 98 68 70 118
'TRIM23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0631 (Fisher's exact test), Q value = 0.27

Table S3468.  Gene #330: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRIM23 MUTATED 0 4 4 1 2
TRIM23 WILD-TYPE 59 71 70 118 36
'TRIM23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S3469.  Gene #330: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRIM23 MUTATED 3 3 0 3 2
TRIM23 WILD-TYPE 48 73 61 68 93
'TRIM23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S3470.  Gene #330: 'TRIM23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRIM23 MUTATED 2 0 1 2 3 1 1 1 0
TRIM23 WILD-TYPE 67 48 38 14 50 19 20 37 50
'BRAF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S3471.  Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BRAF MUTATED 17 1 0 1 1
BRAF WILD-TYPE 15 17 46 26 22

Figure S1059.  Get High-res Image Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BRAF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S3472.  Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BRAF MUTATED 18 2 0
BRAF WILD-TYPE 25 65 36

Figure S1060.  Get High-res Image Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S3473.  Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BRAF MUTATED 7 23 65
BRAF WILD-TYPE 35 150 82

Figure S1061.  Get High-res Image Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BRAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S3474.  Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BRAF MUTATED 24 12 39
BRAF WILD-TYPE 38 61 36

Figure S1062.  Get High-res Image Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BRAF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.26

Table S3475.  Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BRAF MUTATED 16 27 36
BRAF WILD-TYPE 54 93 64
'BRAF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S3476.  Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BRAF MUTATED 12 7 3 14 8 22 8 3 2
BRAF WILD-TYPE 29 19 27 15 31 47 12 11 20

Figure S1063.  Get High-res Image Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S3477.  Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BRAF MUTATED 15 33 28 20
BRAF WILD-TYPE 85 39 44 101

Figure S1064.  Get High-res Image Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S3478.  Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BRAF MUTATED 17 15 43 3 18
BRAF WILD-TYPE 42 60 31 116 20

Figure S1065.  Get High-res Image Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S3479.  Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BRAF MUTATED 8 38 18 10 22
BRAF WILD-TYPE 43 38 43 61 73

Figure S1066.  Get High-res Image Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S3480.  Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BRAF MUTATED 23 21 4 13 8 4 5 18 0
BRAF WILD-TYPE 46 27 35 3 45 16 16 20 50

Figure S1067.  Get High-res Image Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S3481.  Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BRAF MUTATED 2 4 7 4 5 4
BRAF WILD-TYPE 11 12 7 7 6 5
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S3482.  Gene #331: 'BRAF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BRAF MUTATED 2 1 2 4 5 3 6 2 1
BRAF WILD-TYPE 9 6 5 5 3 4 5 7 4
'GTF2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S3483.  Gene #332: 'GTF2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GTF2B MUTATED 0 3 8
GTF2B WILD-TYPE 42 170 139
'GTF2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.88

Table S3484.  Gene #332: 'GTF2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GTF2B MUTATED 3 2 5
GTF2B WILD-TYPE 59 71 70
'GTF2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3485.  Gene #332: 'GTF2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GTF2B MUTATED 2 3 3
GTF2B WILD-TYPE 68 117 97
'GTF2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S3486.  Gene #332: 'GTF2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GTF2B MUTATED 0 1 0 1 2 3 0 1 0
GTF2B WILD-TYPE 41 25 30 28 37 66 20 13 22
'GTF2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S3487.  Gene #332: 'GTF2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GTF2B MUTATED 2 6 0 3
GTF2B WILD-TYPE 98 66 72 118

Figure S1068.  Get High-res Image Gene #332: 'GTF2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GTF2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S3488.  Gene #332: 'GTF2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GTF2B MUTATED 1 2 5 2 1
GTF2B WILD-TYPE 58 73 69 117 37
'GTF2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S3489.  Gene #332: 'GTF2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GTF2B MUTATED 1 6 0 0 4
GTF2B WILD-TYPE 50 70 61 71 91

Figure S1069.  Get High-res Image Gene #332: 'GTF2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GTF2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.56

Table S3490.  Gene #332: 'GTF2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GTF2B MUTATED 2 1 0 2 1 1 1 0 3
GTF2B WILD-TYPE 67 47 39 14 52 19 20 38 47
'DDB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0533 (Fisher's exact test), Q value = 0.25

Table S3491.  Gene #333: 'DDB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DDB1 MUTATED 3 0 0 0 0
DDB1 WILD-TYPE 29 18 46 27 23
'DDB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0382 (Fisher's exact test), Q value = 0.21

Table S3492.  Gene #333: 'DDB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DDB1 MUTATED 3 0 0
DDB1 WILD-TYPE 40 67 36

Figure S1070.  Get High-res Image Gene #333: 'DDB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DDB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S3493.  Gene #333: 'DDB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DDB1 MUTATED 0 3 10
DDB1 WILD-TYPE 42 170 137

Figure S1071.  Get High-res Image Gene #333: 'DDB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DDB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S3494.  Gene #333: 'DDB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DDB1 MUTATED 2 3 5
DDB1 WILD-TYPE 60 70 70
'DDB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S3495.  Gene #333: 'DDB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DDB1 MUTATED 0 4 5
DDB1 WILD-TYPE 70 116 95
'DDB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0714 (Fisher's exact test), Q value = 0.29

Table S3496.  Gene #333: 'DDB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DDB1 MUTATED 0 0 0 0 0 5 2 1 1
DDB1 WILD-TYPE 41 26 30 29 39 64 18 13 21
'DDB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S3497.  Gene #333: 'DDB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DDB1 MUTATED 3 4 3 3
DDB1 WILD-TYPE 97 68 69 118
'DDB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.12

Table S3498.  Gene #333: 'DDB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DDB1 MUTATED 2 3 5 0 3
DDB1 WILD-TYPE 57 72 69 119 35

Figure S1072.  Get High-res Image Gene #333: 'DDB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DDB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S3499.  Gene #333: 'DDB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DDB1 MUTATED 3 5 2 0 2
DDB1 WILD-TYPE 48 71 59 71 93
'DDB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0862 (Fisher's exact test), Q value = 0.32

Table S3500.  Gene #333: 'DDB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DDB1 MUTATED 1 1 1 2 5 0 1 1 0
DDB1 WILD-TYPE 68 47 38 14 48 20 20 37 50
'EZH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0748 (Fisher's exact test), Q value = 0.3

Table S3501.  Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EZH2 MUTATED 3 0 0 2 0
EZH2 WILD-TYPE 29 18 46 25 23
'EZH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0664 (Fisher's exact test), Q value = 0.28

Table S3502.  Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EZH2 MUTATED 4 1 0
EZH2 WILD-TYPE 39 66 36
'EZH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00412 (Fisher's exact test), Q value = 0.058

Table S3503.  Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EZH2 MUTATED 2 14 28
EZH2 WILD-TYPE 40 159 119

Figure S1073.  Get High-res Image Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EZH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S3504.  Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EZH2 MUTATED 13 13 14
EZH2 WILD-TYPE 49 60 61
'EZH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.18

Table S3505.  Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EZH2 MUTATED 4 17 20
EZH2 WILD-TYPE 66 103 80

Figure S1074.  Get High-res Image Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'EZH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0548 (Fisher's exact test), Q value = 0.25

Table S3506.  Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EZH2 MUTATED 2 3 3 3 3 19 4 1 3
EZH2 WILD-TYPE 39 23 27 26 36 50 16 13 19
'EZH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00749 (Fisher's exact test), Q value = 0.081

Table S3507.  Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EZH2 MUTATED 14 15 9 6
EZH2 WILD-TYPE 86 57 63 115

Figure S1075.  Get High-res Image Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EZH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S3508.  Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EZH2 MUTATED 5 14 19 3 3
EZH2 WILD-TYPE 54 61 55 116 35

Figure S1076.  Get High-res Image Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EZH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S3509.  Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EZH2 MUTATED 8 22 4 4 5
EZH2 WILD-TYPE 43 54 57 67 90

Figure S1077.  Get High-res Image Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EZH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00052 (Fisher's exact test), Q value = 0.016

Table S3510.  Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EZH2 MUTATED 16 5 2 6 6 4 1 2 1
EZH2 WILD-TYPE 53 43 37 10 47 16 20 36 49

Figure S1078.  Get High-res Image Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EZH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S3511.  Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EZH2 MUTATED 3 1 3 2 3 0
EZH2 WILD-TYPE 10 15 11 9 8 9
'EZH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.86

Table S3512.  Gene #334: 'EZH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EZH2 MUTATED 1 0 1 3 2 1 3 0 1
EZH2 WILD-TYPE 10 7 6 6 6 6 8 9 4
'PRDM1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3513.  Gene #335: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PRDM1 MUTATED 1 0 1 1 0
PRDM1 WILD-TYPE 31 18 45 26 23
'PRDM1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S3514.  Gene #335: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PRDM1 MUTATED 2 0 1
PRDM1 WILD-TYPE 41 67 35
'PRDM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0818 (Fisher's exact test), Q value = 0.31

Table S3515.  Gene #335: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRDM1 MUTATED 1 6 13
PRDM1 WILD-TYPE 41 167 134
'PRDM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 0.21

Table S3516.  Gene #335: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRDM1 MUTATED 2 4 11
PRDM1 WILD-TYPE 60 69 64

Figure S1079.  Get High-res Image Gene #335: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PRDM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S3517.  Gene #335: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRDM1 MUTATED 3 8 6
PRDM1 WILD-TYPE 67 112 94
'PRDM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.54

Table S3518.  Gene #335: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRDM1 MUTATED 2 1 0 2 1 5 4 0 2
PRDM1 WILD-TYPE 39 25 30 27 38 64 16 14 20
'PRDM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S3519.  Gene #335: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRDM1 MUTATED 4 10 3 3
PRDM1 WILD-TYPE 96 62 69 118

Figure S1080.  Get High-res Image Gene #335: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PRDM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.12

Table S3520.  Gene #335: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRDM1 MUTATED 2 4 10 2 2
PRDM1 WILD-TYPE 57 71 64 117 36

Figure S1081.  Get High-res Image Gene #335: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PRDM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00118 (Fisher's exact test), Q value = 0.028

Table S3521.  Gene #335: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRDM1 MUTATED 5 10 0 2 2
PRDM1 WILD-TYPE 46 66 61 69 93

Figure S1082.  Get High-res Image Gene #335: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PRDM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.017

Table S3522.  Gene #335: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRDM1 MUTATED 2 1 0 5 7 1 0 2 1
PRDM1 WILD-TYPE 67 47 39 11 46 19 21 36 49

Figure S1083.  Get High-res Image Gene #335: 'PRDM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'USP26 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00874 (Fisher's exact test), Q value = 0.088

Table S3523.  Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
USP26 MUTATED 5 0 0 2 0
USP26 WILD-TYPE 27 18 46 25 23

Figure S1084.  Get High-res Image Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'USP26 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 0.22

Table S3524.  Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
USP26 MUTATED 5 1 1
USP26 WILD-TYPE 38 66 35

Figure S1085.  Get High-res Image Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'USP26 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S3525.  Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
USP26 MUTATED 0 1 22
USP26 WILD-TYPE 42 172 125

Figure S1086.  Get High-res Image Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.18

Table S3526.  Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
USP26 MUTATED 7 1 8
USP26 WILD-TYPE 55 72 67

Figure S1087.  Get High-res Image Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'USP26 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0451 (Fisher's exact test), Q value = 0.23

Table S3527.  Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
USP26 MUTATED 1 9 11
USP26 WILD-TYPE 69 111 89

Figure S1088.  Get High-res Image Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'USP26 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S3528.  Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
USP26 MUTATED 1 2 2 2 3 8 3 0 0
USP26 WILD-TYPE 40 24 28 27 36 61 17 14 22
'USP26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00111 (Fisher's exact test), Q value = 0.027

Table S3529.  Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
USP26 MUTATED 0 9 6 8
USP26 WILD-TYPE 100 63 66 113

Figure S1089.  Get High-res Image Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'USP26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00033 (Fisher's exact test), Q value = 0.012

Table S3530.  Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
USP26 MUTATED 2 1 12 3 5
USP26 WILD-TYPE 57 74 62 116 33

Figure S1090.  Get High-res Image Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S3531.  Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
USP26 MUTATED 1 9 3 2 7
USP26 WILD-TYPE 50 67 58 69 88
'USP26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0759 (Fisher's exact test), Q value = 0.3

Table S3532.  Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
USP26 MUTATED 4 4 0 4 3 1 0 4 2
USP26 WILD-TYPE 65 44 39 12 50 19 21 34 48
'USP26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00641 (Fisher's exact test), Q value = 0.075

Table S3533.  Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
USP26 MUTATED 0 0 0 0 3 0
USP26 WILD-TYPE 13 16 14 11 8 9

Figure S1091.  Get High-res Image Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'USP26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S3534.  Gene #336: 'USP26 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
USP26 MUTATED 0 0 0 1 1 1 0 0 0
USP26 WILD-TYPE 11 7 7 8 7 6 11 9 5
'TXNDC15 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3535.  Gene #337: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TXNDC15 MUTATED 0 3 3
TXNDC15 WILD-TYPE 42 170 144
'TXNDC15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3536.  Gene #337: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TXNDC15 MUTATED 1 1 2
TXNDC15 WILD-TYPE 61 72 73
'TXNDC15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S3537.  Gene #337: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TXNDC15 MUTATED 0 1 4
TXNDC15 WILD-TYPE 70 119 96
'TXNDC15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.75

Table S3538.  Gene #337: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TXNDC15 MUTATED 0 1 0 0 0 4 0 0 0
TXNDC15 WILD-TYPE 41 25 30 29 39 65 20 14 22
'TXNDC15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S3539.  Gene #337: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TXNDC15 MUTATED 3 1 0 2
TXNDC15 WILD-TYPE 97 71 72 119
'TXNDC15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S3540.  Gene #337: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TXNDC15 MUTATED 1 2 0 1 2
TXNDC15 WILD-TYPE 58 73 74 118 36
'TXNDC15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S3541.  Gene #337: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TXNDC15 MUTATED 0 1 2 0 2
TXNDC15 WILD-TYPE 51 75 59 71 93
'TXNDC15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.8

Table S3542.  Gene #337: 'TXNDC15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TXNDC15 MUTATED 1 0 0 0 2 0 0 2 0
TXNDC15 WILD-TYPE 68 48 39 16 51 20 21 36 50
'OR1I1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.53

Table S3543.  Gene #338: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR1I1 MUTATED 0 3 7
OR1I1 WILD-TYPE 42 170 140
'OR1I1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.47

Table S3544.  Gene #338: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR1I1 MUTATED 5 1 3
OR1I1 WILD-TYPE 57 72 72
'OR1I1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S3545.  Gene #338: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR1I1 MUTATED 2 3 4
OR1I1 WILD-TYPE 68 117 96
'OR1I1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S3546.  Gene #338: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR1I1 MUTATED 3 0 0 1 1 3 1 0 0
OR1I1 WILD-TYPE 38 26 30 28 38 66 19 14 22
'OR1I1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0923 (Fisher's exact test), Q value = 0.33

Table S3547.  Gene #338: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR1I1 MUTATED 2 2 5 1
OR1I1 WILD-TYPE 98 70 67 120
'OR1I1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0561 (Fisher's exact test), Q value = 0.25

Table S3548.  Gene #338: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR1I1 MUTATED 3 2 4 0 1
OR1I1 WILD-TYPE 56 73 70 119 37
'OR1I1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S3549.  Gene #338: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR1I1 MUTATED 3 2 3 1 1
OR1I1 WILD-TYPE 48 74 58 70 94
'OR1I1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S3550.  Gene #338: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR1I1 MUTATED 2 6 0 0 0 1 0 1 0
OR1I1 WILD-TYPE 67 42 39 16 53 19 21 37 50

Figure S1092.  Get High-res Image Gene #338: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OR1I1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S3551.  Gene #338: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR1I1 MUTATED 0 1 1 0 1 0
OR1I1 WILD-TYPE 13 15 13 11 10 9
'OR1I1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S3552.  Gene #338: 'OR1I1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR1I1 MUTATED 1 0 0 0 1 0 1 0 0
OR1I1 WILD-TYPE 10 7 7 9 7 7 10 9 5
'CUL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.34

Table S3553.  Gene #339: 'CUL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CUL2 MUTATED 3 0 0 1 0
CUL2 WILD-TYPE 29 18 46 26 23
'CUL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S3554.  Gene #339: 'CUL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CUL2 MUTATED 3 1 0
CUL2 WILD-TYPE 40 66 36
'CUL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00838 (Fisher's exact test), Q value = 0.086

Table S3555.  Gene #339: 'CUL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CUL2 MUTATED 1 2 11
CUL2 WILD-TYPE 41 171 136

Figure S1093.  Get High-res Image Gene #339: 'CUL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CUL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.46

Table S3556.  Gene #339: 'CUL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CUL2 MUTATED 5 1 4
CUL2 WILD-TYPE 57 72 71
'CUL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0787 (Fisher's exact test), Q value = 0.3

Table S3557.  Gene #339: 'CUL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CUL2 MUTATED 0 7 6
CUL2 WILD-TYPE 70 113 94
'CUL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S3558.  Gene #339: 'CUL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CUL2 MUTATED 1 1 1 4 0 5 0 0 1
CUL2 WILD-TYPE 40 25 29 25 39 64 20 14 21
'CUL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.74

Table S3559.  Gene #339: 'CUL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CUL2 MUTATED 2 5 3 4
CUL2 WILD-TYPE 98 67 69 117
'CUL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0368 (Fisher's exact test), Q value = 0.2

Table S3560.  Gene #339: 'CUL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CUL2 MUTATED 1 3 6 1 3
CUL2 WILD-TYPE 58 72 68 118 35

Figure S1094.  Get High-res Image Gene #339: 'CUL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CUL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.56

Table S3561.  Gene #339: 'CUL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CUL2 MUTATED 2 5 2 0 4
CUL2 WILD-TYPE 49 71 59 71 91
'CUL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S3562.  Gene #339: 'CUL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CUL2 MUTATED 2 2 1 4 0 1 0 2 1
CUL2 WILD-TYPE 67 46 38 12 53 19 21 36 49

Figure S1095.  Get High-res Image Gene #339: 'CUL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CUL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S3563.  Gene #339: 'CUL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CUL2 MUTATED 0 0 1 0 2 0
CUL2 WILD-TYPE 13 16 13 11 9 9
'CUL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S3564.  Gene #339: 'CUL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CUL2 MUTATED 0 0 0 2 0 0 1 0 0
CUL2 WILD-TYPE 11 7 7 7 8 7 10 9 5
'TMEM169 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.78

Table S3565.  Gene #340: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMEM169 MUTATED 2 4 7
TMEM169 WILD-TYPE 40 169 140
'TMEM169 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.97

Table S3566.  Gene #340: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TMEM169 MUTATED 4 3 6
TMEM169 WILD-TYPE 58 70 69
'TMEM169 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.91

Table S3567.  Gene #340: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TMEM169 MUTATED 2 4 6
TMEM169 WILD-TYPE 68 116 94
'TMEM169 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S3568.  Gene #340: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TMEM169 MUTATED 1 2 0 1 2 5 1 0 0
TMEM169 WILD-TYPE 40 24 30 28 37 64 19 14 22
'TMEM169 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.077 (Fisher's exact test), Q value = 0.3

Table S3569.  Gene #340: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMEM169 MUTATED 3 4 5 1
TMEM169 WILD-TYPE 97 68 67 120
'TMEM169 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0453 (Fisher's exact test), Q value = 0.23

Table S3570.  Gene #340: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMEM169 MUTATED 2 4 6 1 0
TMEM169 WILD-TYPE 57 71 68 118 38

Figure S1096.  Get High-res Image Gene #340: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TMEM169 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.1

Table S3571.  Gene #340: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMEM169 MUTATED 0 8 2 2 1
TMEM169 WILD-TYPE 51 68 59 69 94

Figure S1097.  Get High-res Image Gene #340: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TMEM169 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0537 (Fisher's exact test), Q value = 0.25

Table S3572.  Gene #340: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMEM169 MUTATED 7 2 0 2 1 0 0 0 1
TMEM169 WILD-TYPE 62 46 39 14 52 20 21 38 49
'TMEM169 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.66

Table S3573.  Gene #340: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TMEM169 MUTATED 1 1 0 1 3 1
TMEM169 WILD-TYPE 12 15 14 10 8 8
'TMEM169 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S3574.  Gene #340: 'TMEM169 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TMEM169 MUTATED 1 0 1 2 1 0 1 1 0
TMEM169 WILD-TYPE 10 7 6 7 7 7 10 8 5
'PIK3C2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S3575.  Gene #341: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PIK3C2A MUTATED 1 4 9
PIK3C2A WILD-TYPE 41 169 138
'PIK3C2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3576.  Gene #341: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PIK3C2A MUTATED 4 4 4
PIK3C2A WILD-TYPE 58 69 71
'PIK3C2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S3577.  Gene #341: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PIK3C2A MUTATED 1 5 4
PIK3C2A WILD-TYPE 69 115 96
'PIK3C2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0994 (Fisher's exact test), Q value = 0.34

Table S3578.  Gene #341: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PIK3C2A MUTATED 1 0 0 3 0 3 0 2 1
PIK3C2A WILD-TYPE 40 26 30 26 39 66 20 12 21
'PIK3C2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S3579.  Gene #341: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PIK3C2A MUTATED 3 6 3 2
PIK3C2A WILD-TYPE 97 66 69 119
'PIK3C2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00359 (Fisher's exact test), Q value = 0.053

Table S3580.  Gene #341: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PIK3C2A MUTATED 1 4 7 0 2
PIK3C2A WILD-TYPE 58 71 67 119 36

Figure S1098.  Get High-res Image Gene #341: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3C2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S3581.  Gene #341: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PIK3C2A MUTATED 3 7 2 0 2
PIK3C2A WILD-TYPE 48 69 59 71 93

Figure S1099.  Get High-res Image Gene #341: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PIK3C2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S3582.  Gene #341: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PIK3C2A MUTATED 2 3 2 3 1 1 1 1 0
PIK3C2A WILD-TYPE 67 45 37 13 52 19 20 37 50
'PIK3C2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0909 (Fisher's exact test), Q value = 0.33

Table S3583.  Gene #341: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PIK3C2A MUTATED 0 0 2 0 2 0
PIK3C2A WILD-TYPE 13 16 12 11 9 9
'PIK3C2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.55

Table S3584.  Gene #341: 'PIK3C2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PIK3C2A MUTATED 0 0 0 2 1 1 0 0 0
PIK3C2A WILD-TYPE 11 7 7 7 7 6 11 9 5
'MSH6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00553 (Fisher's exact test), Q value = 0.07

Table S3585.  Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MSH6 MUTATED 7 0 1 2 0
MSH6 WILD-TYPE 25 18 45 25 23

Figure S1100.  Get High-res Image Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MSH6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00197 (Fisher's exact test), Q value = 0.038

Table S3586.  Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MSH6 MUTATED 8 1 1
MSH6 WILD-TYPE 35 66 35

Figure S1101.  Get High-res Image Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MSH6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0218 (Fisher's exact test), Q value = 0.15

Table S3587.  Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MSH6 MUTATED 3 12 24
MSH6 WILD-TYPE 39 161 123

Figure S1102.  Get High-res Image Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MSH6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S3588.  Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MSH6 MUTATED 13 7 10
MSH6 WILD-TYPE 49 66 65
'MSH6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.097

Table S3589.  Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MSH6 MUTATED 2 9 16
MSH6 WILD-TYPE 68 111 84

Figure S1103.  Get High-res Image Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MSH6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0992 (Fisher's exact test), Q value = 0.34

Table S3590.  Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MSH6 MUTATED 3 0 1 1 7 11 1 2 1
MSH6 WILD-TYPE 38 26 29 28 32 58 19 12 21
'MSH6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S3591.  Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MSH6 MUTATED 13 12 5 9
MSH6 WILD-TYPE 87 60 67 112
'MSH6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0072

Table S3592.  Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MSH6 MUTATED 6 12 11 2 8
MSH6 WILD-TYPE 53 63 63 117 30

Figure S1104.  Get High-res Image Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MSH6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.013

Table S3593.  Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MSH6 MUTATED 6 18 4 1 9
MSH6 WILD-TYPE 45 58 57 70 86

Figure S1105.  Get High-res Image Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MSH6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S3594.  Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MSH6 MUTATED 10 7 2 3 4 3 1 6 2
MSH6 WILD-TYPE 59 41 37 13 49 17 20 32 48
'MSH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S3595.  Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MSH6 MUTATED 1 2 1 0 2 0
MSH6 WILD-TYPE 12 14 13 11 9 9
'MSH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S3596.  Gene #342: 'MSH6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MSH6 MUTATED 2 0 0 1 1 0 1 1 0
MSH6 WILD-TYPE 9 7 7 8 7 7 10 8 5
'KRAS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0079

Table S3597.  Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KRAS MUTATED 7 6 12 20 5
KRAS WILD-TYPE 25 12 34 7 18

Figure S1106.  Get High-res Image Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KRAS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00819 (Fisher's exact test), Q value = 0.085

Table S3598.  Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KRAS MUTATED 16 29 5
KRAS WILD-TYPE 27 38 31

Figure S1107.  Get High-res Image Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 0.3

Table S3599.  Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KRAS MUTATED 24 69 72
KRAS WILD-TYPE 18 104 75
'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.14

Table S3600.  Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KRAS MUTATED 33 29 47
KRAS WILD-TYPE 29 44 28

Figure S1108.  Get High-res Image Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.6

Table S3601.  Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KRAS MUTATED 29 64 47
KRAS WILD-TYPE 41 56 53
'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S3602.  Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KRAS MUTATED 14 9 17 17 15 39 9 7 13
KRAS WILD-TYPE 27 17 13 12 24 30 11 7 9
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S3603.  Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KRAS MUTATED 43 49 34 40
KRAS WILD-TYPE 57 23 38 81

Figure S1109.  Get High-res Image Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00374 (Fisher's exact test), Q value = 0.055

Table S3604.  Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KRAS MUTATED 28 40 44 41 13
KRAS WILD-TYPE 31 35 30 78 25

Figure S1110.  Get High-res Image Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S3605.  Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KRAS MUTATED 24 41 30 28 39
KRAS WILD-TYPE 27 35 31 43 56
'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0659 (Fisher's exact test), Q value = 0.28

Table S3606.  Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KRAS MUTATED 44 21 14 7 23 11 7 17 18
KRAS WILD-TYPE 25 27 25 9 30 9 14 21 32
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S3607.  Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KRAS MUTATED 7 7 8 3 7 5
KRAS WILD-TYPE 6 9 6 8 4 4
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.91

Table S3608.  Gene #343: 'KRAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KRAS MUTATED 4 5 2 5 5 3 4 5 4
KRAS WILD-TYPE 7 2 5 4 3 4 7 4 1
'NEXN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S3609.  Gene #344: 'NEXN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NEXN MUTATED 0 0 1 3 0
NEXN WILD-TYPE 32 18 45 24 23
'NEXN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.98

Table S3610.  Gene #344: 'NEXN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NEXN MUTATED 1 3 0
NEXN WILD-TYPE 42 64 36
'NEXN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S3611.  Gene #344: 'NEXN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NEXN MUTATED 1 6 10
NEXN WILD-TYPE 41 167 137
'NEXN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.97

Table S3612.  Gene #344: 'NEXN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NEXN MUTATED 4 3 6
NEXN WILD-TYPE 58 70 69
'NEXN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S3613.  Gene #344: 'NEXN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NEXN MUTATED 1 8 6
NEXN WILD-TYPE 69 112 94
'NEXN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0803 (Fisher's exact test), Q value = 0.31

Table S3614.  Gene #344: 'NEXN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NEXN MUTATED 3 3 4 0 0 3 2 0 0
NEXN WILD-TYPE 38 23 26 29 39 66 18 14 22
'NEXN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S3615.  Gene #344: 'NEXN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NEXN MUTATED 4 5 5 3
NEXN WILD-TYPE 96 67 67 118
'NEXN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S3616.  Gene #344: 'NEXN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NEXN MUTATED 6 3 3 4 1
NEXN WILD-TYPE 53 72 71 115 37
'NEXN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S3617.  Gene #344: 'NEXN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NEXN MUTATED 3 3 6 1 2
NEXN WILD-TYPE 48 73 55 70 93
'NEXN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S3618.  Gene #344: 'NEXN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NEXN MUTATED 3 5 1 2 1 2 0 0 1
NEXN WILD-TYPE 66 43 38 14 52 18 21 38 49
'NEXN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.74

Table S3619.  Gene #344: 'NEXN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NEXN MUTATED 1 2 0 1 0 2
NEXN WILD-TYPE 12 14 14 10 11 7
'NEXN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.21

Table S3620.  Gene #344: 'NEXN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NEXN MUTATED 1 1 3 0 0 1 0 0 0
NEXN WILD-TYPE 10 6 4 9 8 6 11 9 5

Figure S1111.  Get High-res Image Gene #344: 'NEXN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SP110 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.86

Table S3621.  Gene #345: 'SP110 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SP110 MUTATED 2 5 3
SP110 WILD-TYPE 40 168 144
'SP110 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S3622.  Gene #345: 'SP110 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SP110 MUTATED 2 4 3
SP110 WILD-TYPE 60 69 72
'SP110 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S3623.  Gene #345: 'SP110 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SP110 MUTATED 0 6 3
SP110 WILD-TYPE 70 114 97
'SP110 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S3624.  Gene #345: 'SP110 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SP110 MUTATED 1 1 0 2 1 2 0 2 0
SP110 WILD-TYPE 40 25 30 27 38 67 20 12 22
'SP110 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S3625.  Gene #345: 'SP110 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SP110 MUTATED 3 4 2 1
SP110 WILD-TYPE 97 68 70 120
'SP110 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0718 (Fisher's exact test), Q value = 0.29

Table S3626.  Gene #345: 'SP110 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SP110 MUTATED 2 3 4 0 1
SP110 WILD-TYPE 57 72 70 119 37
'SP110 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S3627.  Gene #345: 'SP110 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SP110 MUTATED 4 3 1 1 1
SP110 WILD-TYPE 47 73 60 70 94
'SP110 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S3628.  Gene #345: 'SP110 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SP110 MUTATED 3 3 1 1 0 1 0 1 0
SP110 WILD-TYPE 66 45 38 15 53 19 21 37 50
'MYST4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00747 (Fisher's exact test), Q value = 0.081

Table S3629.  Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MYST4 MUTATED 5 0 0 1 0
MYST4 WILD-TYPE 27 18 46 26 23

Figure S1112.  Get High-res Image Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MYST4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00063 (Fisher's exact test), Q value = 0.018

Table S3630.  Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MYST4 MUTATED 6 0 0
MYST4 WILD-TYPE 37 67 36

Figure S1113.  Get High-res Image Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MYST4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.013

Table S3631.  Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MYST4 MUTATED 2 3 18
MYST4 WILD-TYPE 40 170 129

Figure S1114.  Get High-res Image Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MYST4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.1

Table S3632.  Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MYST4 MUTATED 9 1 7
MYST4 WILD-TYPE 53 72 68

Figure S1115.  Get High-res Image Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MYST4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S3633.  Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MYST4 MUTATED 3 7 10
MYST4 WILD-TYPE 67 113 90
'MYST4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S3634.  Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MYST4 MUTATED 2 0 0 1 5 8 1 2 1
MYST4 WILD-TYPE 39 26 30 28 34 61 19 12 21
'MYST4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S3635.  Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MYST4 MUTATED 3 8 6 6
MYST4 WILD-TYPE 97 64 66 115
'MYST4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S3636.  Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MYST4 MUTATED 3 3 11 0 6
MYST4 WILD-TYPE 56 72 63 119 32

Figure S1116.  Get High-res Image Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYST4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.12

Table S3637.  Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MYST4 MUTATED 2 8 3 0 10
MYST4 WILD-TYPE 49 68 58 71 85

Figure S1117.  Get High-res Image Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MYST4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00471 (Fisher's exact test), Q value = 0.064

Table S3638.  Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MYST4 MUTATED 3 6 0 1 2 2 0 8 1
MYST4 WILD-TYPE 66 42 39 15 51 18 21 30 49

Figure S1118.  Get High-res Image Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MYST4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0066 (Fisher's exact test), Q value = 0.076

Table S3639.  Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MYST4 MUTATED 0 0 0 0 3 0
MYST4 WILD-TYPE 13 16 14 11 8 9

Figure S1119.  Get High-res Image Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MYST4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S3640.  Gene #346: 'MYST4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MYST4 MUTATED 0 0 0 1 0 0 2 0 0
MYST4 WILD-TYPE 11 7 7 8 8 7 9 9 5
'PPARGC1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S3641.  Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PPARGC1A MUTATED 4 0 0 1 0
PPARGC1A WILD-TYPE 28 18 46 26 23

Figure S1120.  Get High-res Image Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PPARGC1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00263 (Fisher's exact test), Q value = 0.044

Table S3642.  Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PPARGC1A MUTATED 5 0 0
PPARGC1A WILD-TYPE 38 67 36

Figure S1121.  Get High-res Image Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PPARGC1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0446 (Fisher's exact test), Q value = 0.22

Table S3643.  Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PPARGC1A MUTATED 2 6 15
PPARGC1A WILD-TYPE 40 167 132

Figure S1122.  Get High-res Image Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PPARGC1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.66

Table S3644.  Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PPARGC1A MUTATED 3 6 9
PPARGC1A WILD-TYPE 59 67 66
'PPARGC1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S3645.  Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PPARGC1A MUTATED 4 10 8
PPARGC1A WILD-TYPE 66 110 92
'PPARGC1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S3646.  Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PPARGC1A MUTATED 1 1 1 4 6 5 1 1 2
PPARGC1A WILD-TYPE 40 25 29 25 33 64 19 13 20
'PPARGC1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S3647.  Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PPARGC1A MUTATED 5 7 5 6
PPARGC1A WILD-TYPE 95 65 67 115
'PPARGC1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00023 (Fisher's exact test), Q value = 0.0098

Table S3648.  Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PPARGC1A MUTATED 3 7 7 0 6
PPARGC1A WILD-TYPE 56 68 67 119 32

Figure S1123.  Get High-res Image Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPARGC1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 0.24

Table S3649.  Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PPARGC1A MUTATED 4 10 2 1 6
PPARGC1A WILD-TYPE 47 66 59 70 89

Figure S1124.  Get High-res Image Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PPARGC1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S3650.  Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PPARGC1A MUTATED 8 3 0 2 3 1 0 6 0
PPARGC1A WILD-TYPE 61 45 39 14 50 19 21 32 50

Figure S1125.  Get High-res Image Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PPARGC1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00971 (Fisher's exact test), Q value = 0.093

Table S3651.  Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PPARGC1A MUTATED 0 0 0 0 3 1
PPARGC1A WILD-TYPE 13 16 14 11 8 8

Figure S1126.  Get High-res Image Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PPARGC1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.98

Table S3652.  Gene #347: 'PPARGC1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PPARGC1A MUTATED 1 0 0 2 0 0 1 0 0
PPARGC1A WILD-TYPE 10 7 7 7 8 7 10 9 5
'CLIP4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S3653.  Gene #348: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CLIP4 MUTATED 4 0 0 1 0
CLIP4 WILD-TYPE 28 18 46 26 23

Figure S1127.  Get High-res Image Gene #348: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CLIP4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0248 (Fisher's exact test), Q value = 0.16

Table S3654.  Gene #348: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CLIP4 MUTATED 4 0 1
CLIP4 WILD-TYPE 39 67 35

Figure S1128.  Get High-res Image Gene #348: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CLIP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S3655.  Gene #348: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CLIP4 MUTATED 2 3 8
CLIP4 WILD-TYPE 40 170 139
'CLIP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 0.24

Table S3656.  Gene #348: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CLIP4 MUTATED 2 0 5
CLIP4 WILD-TYPE 60 73 70

Figure S1129.  Get High-res Image Gene #348: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CLIP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S3657.  Gene #348: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CLIP4 MUTATED 1 5 4
CLIP4 WILD-TYPE 69 115 96
'CLIP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S3658.  Gene #348: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CLIP4 MUTATED 1 1 1 2 0 2 1 1 1
CLIP4 WILD-TYPE 40 25 29 27 39 67 19 13 21
'CLIP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S3659.  Gene #348: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CLIP4 MUTATED 2 3 2 7
CLIP4 WILD-TYPE 98 69 70 114
'CLIP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S3660.  Gene #348: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CLIP4 MUTATED 0 4 2 4 4
CLIP4 WILD-TYPE 59 71 72 115 34
'CLIP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.97

Table S3661.  Gene #348: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CLIP4 MUTATED 1 2 1 4 5
CLIP4 WILD-TYPE 50 74 60 67 90
'CLIP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.51

Table S3662.  Gene #348: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CLIP4 MUTATED 3 0 0 1 3 0 0 4 2
CLIP4 WILD-TYPE 66 48 39 15 50 20 21 34 48
'CLIP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S3663.  Gene #348: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CLIP4 MUTATED 0 0 2 0 1 0
CLIP4 WILD-TYPE 13 16 12 11 10 9
'CLIP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S3664.  Gene #348: 'CLIP4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CLIP4 MUTATED 1 0 0 1 1 0 0 0 0
CLIP4 WILD-TYPE 10 7 7 8 7 7 11 9 5
'PAK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S3665.  Gene #349: 'PAK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PAK3 MUTATED 2 0 0 1 0
PAK3 WILD-TYPE 30 18 46 26 23
'PAK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.79

Table S3666.  Gene #349: 'PAK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PAK3 MUTATED 2 1 0
PAK3 WILD-TYPE 41 66 36
'PAK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.2

Table S3667.  Gene #349: 'PAK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PAK3 MUTATED 0 5 12
PAK3 WILD-TYPE 42 168 135

Figure S1130.  Get High-res Image Gene #349: 'PAK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PAK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S3668.  Gene #349: 'PAK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PAK3 MUTATED 7 2 5
PAK3 WILD-TYPE 55 71 70
'PAK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0834 (Fisher's exact test), Q value = 0.31

Table S3669.  Gene #349: 'PAK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PAK3 MUTATED 2 3 9
PAK3 WILD-TYPE 68 117 91
'PAK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.9

Table S3670.  Gene #349: 'PAK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PAK3 MUTATED 1 1 0 1 1 7 1 1 1
PAK3 WILD-TYPE 40 25 30 28 38 62 19 13 21
'PAK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S3671.  Gene #349: 'PAK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PAK3 MUTATED 2 6 5 4
PAK3 WILD-TYPE 98 66 67 117
'PAK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S3672.  Gene #349: 'PAK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PAK3 MUTATED 4 2 7 1 3
PAK3 WILD-TYPE 55 73 67 118 35

Figure S1131.  Get High-res Image Gene #349: 'PAK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PAK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00638 (Fisher's exact test), Q value = 0.075

Table S3673.  Gene #349: 'PAK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PAK3 MUTATED 0 10 1 2 4
PAK3 WILD-TYPE 51 66 60 69 91

Figure S1132.  Get High-res Image Gene #349: 'PAK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PAK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S3674.  Gene #349: 'PAK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PAK3 MUTATED 5 3 0 3 1 1 0 3 1
PAK3 WILD-TYPE 64 45 39 13 52 19 21 35 49
'PAK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S3675.  Gene #349: 'PAK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PAK3 MUTATED 0 1 1 2 1 0
PAK3 WILD-TYPE 13 15 13 9 10 9
'PAK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S3676.  Gene #349: 'PAK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PAK3 MUTATED 1 0 0 0 1 0 2 1 0
PAK3 WILD-TYPE 10 7 7 9 7 7 9 8 5
'KCNS3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S3677.  Gene #350: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KCNS3 MUTATED 1 1 0 1 0
KCNS3 WILD-TYPE 31 17 46 26 23
'KCNS3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3678.  Gene #350: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KCNS3 MUTATED 1 1 1
KCNS3 WILD-TYPE 42 66 35
'KCNS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 0.33

Table S3679.  Gene #350: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KCNS3 MUTATED 2 5 12
KCNS3 WILD-TYPE 40 168 135
'KCNS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S3680.  Gene #350: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KCNS3 MUTATED 2 7 8
KCNS3 WILD-TYPE 60 66 67
'KCNS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.55

Table S3681.  Gene #350: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KCNS3 MUTATED 2 11 6
KCNS3 WILD-TYPE 68 109 94
'KCNS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S3682.  Gene #350: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KCNS3 MUTATED 2 1 2 4 1 5 2 0 2
KCNS3 WILD-TYPE 39 25 28 25 38 64 18 14 20
'KCNS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S3683.  Gene #350: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KCNS3 MUTATED 5 6 4 4
KCNS3 WILD-TYPE 95 66 68 117
'KCNS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.76

Table S3684.  Gene #350: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KCNS3 MUTATED 2 6 6 4 1
KCNS3 WILD-TYPE 57 69 68 115 37
'KCNS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.2

Table S3685.  Gene #350: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KCNS3 MUTATED 6 6 0 4 3
KCNS3 WILD-TYPE 45 70 61 67 92

Figure S1133.  Get High-res Image Gene #350: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KCNS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.044 (Fisher's exact test), Q value = 0.22

Table S3686.  Gene #350: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KCNS3 MUTATED 3 1 2 1 8 2 0 2 0
KCNS3 WILD-TYPE 66 47 37 15 45 18 21 36 50

Figure S1134.  Get High-res Image Gene #350: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KCNS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S3687.  Gene #350: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KCNS3 MUTATED 1 1 2 1 1 0
KCNS3 WILD-TYPE 12 15 12 10 10 9
'KCNS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S3688.  Gene #350: 'KCNS3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KCNS3 MUTATED 0 0 0 1 1 0 3 1 0
KCNS3 WILD-TYPE 11 7 7 8 7 7 8 8 5
'TRPM7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.17

Table S3689.  Gene #351: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TRPM7 MUTATED 4 0 0 2 0
TRPM7 WILD-TYPE 28 18 46 25 23

Figure S1135.  Get High-res Image Gene #351: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRPM7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S3690.  Gene #351: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TRPM7 MUTATED 4 1 1
TRPM7 WILD-TYPE 39 66 35
'TRPM7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00995 (Fisher's exact test), Q value = 0.094

Table S3691.  Gene #351: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRPM7 MUTATED 2 7 19
TRPM7 WILD-TYPE 40 166 128

Figure S1136.  Get High-res Image Gene #351: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRPM7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S3692.  Gene #351: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRPM7 MUTATED 10 4 7
TRPM7 WILD-TYPE 52 69 68
'TRPM7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S3693.  Gene #351: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRPM7 MUTATED 4 6 12
TRPM7 WILD-TYPE 66 114 88
'TRPM7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S3694.  Gene #351: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRPM7 MUTATED 6 1 1 2 1 8 1 0 2
TRPM7 WILD-TYPE 35 25 29 27 38 61 19 14 20
'TRPM7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S3695.  Gene #351: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRPM7 MUTATED 5 5 10 8
TRPM7 WILD-TYPE 95 67 62 113
'TRPM7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S3696.  Gene #351: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRPM7 MUTATED 3 6 11 5 3
TRPM7 WILD-TYPE 56 69 63 114 35
'TRPM7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S3697.  Gene #351: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRPM7 MUTATED 4 9 6 2 6
TRPM7 WILD-TYPE 47 67 55 69 89
'TRPM7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0577 (Fisher's exact test), Q value = 0.26

Table S3698.  Gene #351: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRPM7 MUTATED 3 8 1 3 6 2 1 2 1
TRPM7 WILD-TYPE 66 40 38 13 47 18 20 36 49
'TRPM7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S3699.  Gene #351: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TRPM7 MUTATED 0 5 1 2 2 0
TRPM7 WILD-TYPE 13 11 13 9 9 9
'TRPM7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S3700.  Gene #351: 'TRPM7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TRPM7 MUTATED 2 0 0 1 1 2 4 0 0
TRPM7 WILD-TYPE 9 7 7 8 7 5 7 9 5
'DSG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S3701.  Gene #352: 'DSG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DSG1 MUTATED 3 0 1 2 0
DSG1 WILD-TYPE 29 18 45 25 23
'DSG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.086 (Fisher's exact test), Q value = 0.32

Table S3702.  Gene #352: 'DSG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DSG1 MUTATED 4 2 0
DSG1 WILD-TYPE 39 65 36
'DSG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00435 (Fisher's exact test), Q value = 0.06

Table S3703.  Gene #352: 'DSG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DSG1 MUTATED 1 3 14
DSG1 WILD-TYPE 41 170 133

Figure S1137.  Get High-res Image Gene #352: 'DSG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DSG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0448 (Fisher's exact test), Q value = 0.23

Table S3704.  Gene #352: 'DSG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DSG1 MUTATED 7 1 3
DSG1 WILD-TYPE 55 72 72

Figure S1138.  Get High-res Image Gene #352: 'DSG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DSG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00539 (Fisher's exact test), Q value = 0.069

Table S3705.  Gene #352: 'DSG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DSG1 MUTATED 0 5 11
DSG1 WILD-TYPE 70 115 89

Figure S1139.  Get High-res Image Gene #352: 'DSG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DSG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S3706.  Gene #352: 'DSG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DSG1 MUTATED 2 1 3 1 0 9 0 0 0
DSG1 WILD-TYPE 39 25 27 28 39 60 20 14 22
'DSG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S3707.  Gene #352: 'DSG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DSG1 MUTATED 1 4 5 8
DSG1 WILD-TYPE 99 68 67 113
'DSG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S3708.  Gene #352: 'DSG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DSG1 MUTATED 2 3 5 3 5
DSG1 WILD-TYPE 57 72 69 116 33
'DSG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0825 (Fisher's exact test), Q value = 0.31

Table S3709.  Gene #352: 'DSG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DSG1 MUTATED 1 7 1 1 7
DSG1 WILD-TYPE 50 69 60 70 88
'DSG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S3710.  Gene #352: 'DSG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DSG1 MUTATED 3 4 0 0 2 1 1 3 3
DSG1 WILD-TYPE 66 44 39 16 51 19 20 35 47
'ZNF585A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00882 (Fisher's exact test), Q value = 0.088

Table S3711.  Gene #353: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF585A MUTATED 5 0 0 2 0
ZNF585A WILD-TYPE 27 18 46 25 23

Figure S1140.  Get High-res Image Gene #353: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF585A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0438 (Fisher's exact test), Q value = 0.22

Table S3712.  Gene #353: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF585A MUTATED 5 1 1
ZNF585A WILD-TYPE 38 66 35

Figure S1141.  Get High-res Image Gene #353: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZNF585A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.012

Table S3713.  Gene #353: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF585A MUTATED 1 1 14
ZNF585A WILD-TYPE 41 172 133

Figure S1142.  Get High-res Image Gene #353: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF585A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S3714.  Gene #353: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF585A MUTATED 3 2 4
ZNF585A WILD-TYPE 59 71 71
'ZNF585A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S3715.  Gene #353: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF585A MUTATED 1 6 4
ZNF585A WILD-TYPE 69 114 96
'ZNF585A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S3716.  Gene #353: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF585A MUTATED 1 1 1 0 2 3 2 0 1
ZNF585A WILD-TYPE 40 25 29 29 37 66 18 14 21
'ZNF585A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S3717.  Gene #353: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF585A MUTATED 1 4 4 7
ZNF585A WILD-TYPE 99 68 68 114
'ZNF585A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0907 (Fisher's exact test), Q value = 0.33

Table S3718.  Gene #353: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF585A MUTATED 1 3 4 3 5
ZNF585A WILD-TYPE 58 72 70 116 33
'ZNF585A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S3719.  Gene #353: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF585A MUTATED 2 3 2 2 6
ZNF585A WILD-TYPE 49 73 59 69 89
'ZNF585A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S3720.  Gene #353: 'ZNF585A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF585A MUTATED 2 3 0 1 2 2 0 4 1
ZNF585A WILD-TYPE 67 45 39 15 51 18 21 34 49
'KPNA5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S3721.  Gene #354: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KPNA5 MUTATED 0 1 1 1 0
KPNA5 WILD-TYPE 32 17 45 26 23
'KPNA5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S3722.  Gene #354: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KPNA5 MUTATED 1 2 0
KPNA5 WILD-TYPE 42 65 36
'KPNA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3723.  Gene #354: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KPNA5 MUTATED 1 5 5
KPNA5 WILD-TYPE 41 168 142
'KPNA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S3724.  Gene #354: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KPNA5 MUTATED 1 4 3
KPNA5 WILD-TYPE 61 69 72
'KPNA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S3725.  Gene #354: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KPNA5 MUTATED 1 5 3
KPNA5 WILD-TYPE 69 115 97
'KPNA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S3726.  Gene #354: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KPNA5 MUTATED 0 0 1 3 1 3 0 1 0
KPNA5 WILD-TYPE 41 26 29 26 38 66 20 13 22
'KPNA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S3727.  Gene #354: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KPNA5 MUTATED 5 3 1 2
KPNA5 WILD-TYPE 95 69 71 119
'KPNA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.51

Table S3728.  Gene #354: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KPNA5 MUTATED 0 4 4 2 1
KPNA5 WILD-TYPE 59 71 70 117 37
'KPNA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.62

Table S3729.  Gene #354: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KPNA5 MUTATED 0 4 2 3 1
KPNA5 WILD-TYPE 51 72 59 68 94
'KPNA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S3730.  Gene #354: 'KPNA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KPNA5 MUTATED 4 1 1 2 0 0 1 0 1
KPNA5 WILD-TYPE 65 47 38 14 53 20 20 38 49
'CDC42BPA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S3731.  Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CDC42BPA MUTATED 6 0 1 2 0
CDC42BPA WILD-TYPE 26 18 45 25 23

Figure S1143.  Get High-res Image Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDC42BPA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00044 (Fisher's exact test), Q value = 0.015

Table S3732.  Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CDC42BPA MUTATED 8 1 0
CDC42BPA WILD-TYPE 35 66 36

Figure S1144.  Get High-res Image Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDC42BPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00129 (Fisher's exact test), Q value = 0.029

Table S3733.  Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CDC42BPA MUTATED 2 6 21
CDC42BPA WILD-TYPE 40 167 126

Figure S1145.  Get High-res Image Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDC42BPA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S3734.  Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CDC42BPA MUTATED 8 5 7
CDC42BPA WILD-TYPE 54 68 68
'CDC42BPA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0802 (Fisher's exact test), Q value = 0.31

Table S3735.  Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CDC42BPA MUTATED 4 7 14
CDC42BPA WILD-TYPE 66 113 86
'CDC42BPA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S3736.  Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CDC42BPA MUTATED 2 2 1 0 7 10 2 0 1
CDC42BPA WILD-TYPE 39 24 29 29 32 59 18 14 21
'CDC42BPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.99

Table S3737.  Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CDC42BPA MUTATED 7 8 6 8
CDC42BPA WILD-TYPE 93 64 66 113
'CDC42BPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S3738.  Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CDC42BPA MUTATED 3 8 9 1 8
CDC42BPA WILD-TYPE 56 67 65 118 30

Figure S1146.  Get High-res Image Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDC42BPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S3739.  Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CDC42BPA MUTATED 2 11 3 3 9
CDC42BPA WILD-TYPE 49 65 58 68 86
'CDC42BPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00183 (Fisher's exact test), Q value = 0.036

Table S3740.  Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CDC42BPA MUTATED 8 5 2 3 0 1 0 8 1
CDC42BPA WILD-TYPE 61 43 37 13 53 19 21 30 49

Figure S1147.  Get High-res Image Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDC42BPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S3741.  Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CDC42BPA MUTATED 0 1 1 0 2 0
CDC42BPA WILD-TYPE 13 15 13 11 9 9
'CDC42BPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S3742.  Gene #355: 'CDC42BPA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CDC42BPA MUTATED 0 1 0 1 1 0 1 0 0
CDC42BPA WILD-TYPE 11 6 7 8 7 7 10 9 5
'KIR2DL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S3743.  Gene #356: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIR2DL3 MUTATED 2 8 8
KIR2DL3 WILD-TYPE 40 165 139
'KIR2DL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S3744.  Gene #356: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIR2DL3 MUTATED 7 6 4
KIR2DL3 WILD-TYPE 55 67 71
'KIR2DL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S3745.  Gene #356: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIR2DL3 MUTATED 3 4 8
KIR2DL3 WILD-TYPE 67 116 92
'KIR2DL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S3746.  Gene #356: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIR2DL3 MUTATED 1 1 1 1 1 7 1 0 2
KIR2DL3 WILD-TYPE 40 25 29 28 38 62 19 14 20
'KIR2DL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.62

Table S3747.  Gene #356: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIR2DL3 MUTATED 8 2 5 4
KIR2DL3 WILD-TYPE 92 70 67 117
'KIR2DL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S3748.  Gene #356: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIR2DL3 MUTATED 5 7 3 3 1
KIR2DL3 WILD-TYPE 54 68 71 116 37
'KIR2DL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0868 (Fisher's exact test), Q value = 0.32

Table S3749.  Gene #356: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIR2DL3 MUTATED 3 6 6 3 1
KIR2DL3 WILD-TYPE 48 70 55 68 94
'KIR2DL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S3750.  Gene #356: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIR2DL3 MUTATED 5 4 1 0 4 1 0 1 3
KIR2DL3 WILD-TYPE 64 44 38 16 49 19 21 37 47
'KIR2DL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.75

Table S3751.  Gene #356: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIR2DL3 MUTATED 0 2 0 0 1 0
KIR2DL3 WILD-TYPE 13 14 14 11 10 9
'KIR2DL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S3752.  Gene #356: 'KIR2DL3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIR2DL3 MUTATED 1 1 0 0 0 0 1 0 0
KIR2DL3 WILD-TYPE 10 6 7 9 8 7 10 9 5
'C5ORF22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S3753.  Gene #357: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C5ORF22 MUTATED 1 3 7
C5ORF22 WILD-TYPE 41 170 140
'C5ORF22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S3754.  Gene #357: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C5ORF22 MUTATED 2 4 3
C5ORF22 WILD-TYPE 60 69 72
'C5ORF22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S3755.  Gene #357: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C5ORF22 MUTATED 1 3 5
C5ORF22 WILD-TYPE 69 117 95
'C5ORF22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S3756.  Gene #357: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C5ORF22 MUTATED 0 0 0 2 1 4 1 1 0
C5ORF22 WILD-TYPE 41 26 30 27 38 65 19 13 22
'C5ORF22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.72

Table S3757.  Gene #357: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C5ORF22 MUTATED 4 4 1 2
C5ORF22 WILD-TYPE 96 68 71 119
'C5ORF22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S3758.  Gene #357: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C5ORF22 MUTATED 1 5 3 2 0
C5ORF22 WILD-TYPE 58 70 71 117 38
'C5ORF22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S3759.  Gene #357: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C5ORF22 MUTATED 2 5 1 1 2
C5ORF22 WILD-TYPE 49 71 60 70 93
'C5ORF22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.21

Table S3760.  Gene #357: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C5ORF22 MUTATED 2 1 2 3 0 1 1 0 1
C5ORF22 WILD-TYPE 67 47 37 13 53 19 20 38 49

Figure S1148.  Get High-res Image Gene #357: 'C5ORF22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CSNK1D MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S3761.  Gene #358: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CSNK1D MUTATED 2 0 0 1 0
CSNK1D WILD-TYPE 30 18 46 26 23
'CSNK1D MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0374 (Fisher's exact test), Q value = 0.21

Table S3762.  Gene #358: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CSNK1D MUTATED 3 0 0
CSNK1D WILD-TYPE 40 67 36

Figure S1149.  Get High-res Image Gene #358: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CSNK1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S3763.  Gene #358: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CSNK1D MUTATED 0 5 9
CSNK1D WILD-TYPE 42 168 138
'CSNK1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.66

Table S3764.  Gene #358: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CSNK1D MUTATED 5 4 2
CSNK1D WILD-TYPE 57 69 73
'CSNK1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S3765.  Gene #358: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CSNK1D MUTATED 1 4 8
CSNK1D WILD-TYPE 69 116 92
'CSNK1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.95

Table S3766.  Gene #358: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CSNK1D MUTATED 1 0 2 1 1 6 1 1 0
CSNK1D WILD-TYPE 40 26 28 28 38 63 19 13 22
'CSNK1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S3767.  Gene #358: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CSNK1D MUTATED 2 4 5 3
CSNK1D WILD-TYPE 98 68 67 118
'CSNK1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 0.12

Table S3768.  Gene #358: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CSNK1D MUTATED 4 3 4 0 3
CSNK1D WILD-TYPE 55 72 70 119 35

Figure S1150.  Get High-res Image Gene #358: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CSNK1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.53

Table S3769.  Gene #358: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CSNK1D MUTATED 1 4 5 1 2
CSNK1D WILD-TYPE 50 72 56 70 93
'CSNK1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.76

Table S3770.  Gene #358: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CSNK1D MUTATED 3 4 1 1 0 1 0 2 1
CSNK1D WILD-TYPE 66 44 38 15 53 19 21 36 49
'CSNK1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S3771.  Gene #358: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CSNK1D MUTATED 1 0 2 0 0 1
CSNK1D WILD-TYPE 12 16 12 11 11 8
'CSNK1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S3772.  Gene #358: 'CSNK1D MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CSNK1D MUTATED 2 0 0 0 0 0 1 1 0
CSNK1D WILD-TYPE 9 7 7 9 8 7 10 8 5
'IQSEC2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S3773.  Gene #359: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IQSEC2 MUTATED 3 0 1 0 0
IQSEC2 WILD-TYPE 29 18 45 27 23
'IQSEC2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S3774.  Gene #359: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IQSEC2 MUTATED 3 1 0
IQSEC2 WILD-TYPE 40 66 36
'IQSEC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0681 (Fisher's exact test), Q value = 0.28

Table S3775.  Gene #359: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IQSEC2 MUTATED 1 4 11
IQSEC2 WILD-TYPE 41 169 136
'IQSEC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S3776.  Gene #359: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IQSEC2 MUTATED 2 1 9
IQSEC2 WILD-TYPE 60 72 66

Figure S1151.  Get High-res Image Gene #359: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'IQSEC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S3777.  Gene #359: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IQSEC2 MUTATED 1 5 6
IQSEC2 WILD-TYPE 69 115 94
'IQSEC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S3778.  Gene #359: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IQSEC2 MUTATED 0 0 2 3 2 5 0 0 0
IQSEC2 WILD-TYPE 41 26 28 26 37 64 20 14 22
'IQSEC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S3779.  Gene #359: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IQSEC2 MUTATED 1 11 0 4
IQSEC2 WILD-TYPE 99 61 72 117

Figure S1152.  Get High-res Image Gene #359: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IQSEC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00094 (Fisher's exact test), Q value = 0.024

Table S3780.  Gene #359: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IQSEC2 MUTATED 0 3 9 1 3
IQSEC2 WILD-TYPE 59 72 65 118 35

Figure S1153.  Get High-res Image Gene #359: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IQSEC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00222 (Fisher's exact test), Q value = 0.04

Table S3781.  Gene #359: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IQSEC2 MUTATED 2 10 0 1 3
IQSEC2 WILD-TYPE 49 66 61 70 92

Figure S1154.  Get High-res Image Gene #359: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IQSEC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S3782.  Gene #359: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IQSEC2 MUTATED 3 0 0 7 1 1 1 3 0
IQSEC2 WILD-TYPE 66 48 39 9 52 19 20 35 50

Figure S1155.  Get High-res Image Gene #359: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RAB6C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S3783.  Gene #360: 'RAB6C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RAB6C MUTATED 0 2 3
RAB6C WILD-TYPE 42 171 144
'RAB6C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S3784.  Gene #360: 'RAB6C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RAB6C MUTATED 2 1 2
RAB6C WILD-TYPE 60 72 73
'RAB6C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S3785.  Gene #360: 'RAB6C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RAB6C MUTATED 2 1 2 0
RAB6C WILD-TYPE 98 71 70 121
'RAB6C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.52

Table S3786.  Gene #360: 'RAB6C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RAB6C MUTATED 1 2 2 0 0
RAB6C WILD-TYPE 58 73 72 119 38
'RAB6C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S3787.  Gene #360: 'RAB6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RAB6C MUTATED 2 2 1 0 0
RAB6C WILD-TYPE 49 74 60 71 95
'RAB6C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S3788.  Gene #360: 'RAB6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RAB6C MUTATED 1 2 0 1 0 1 0 0 0
RAB6C WILD-TYPE 68 46 39 15 53 19 21 38 50
'C9ORF131 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S3789.  Gene #361: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C9ORF131 MUTATED 2 0 0 2 0
C9ORF131 WILD-TYPE 30 18 46 25 23
'C9ORF131 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S3790.  Gene #361: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C9ORF131 MUTATED 2 1 1
C9ORF131 WILD-TYPE 41 66 35
'C9ORF131 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S3791.  Gene #361: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C9ORF131 MUTATED 1 0 12
C9ORF131 WILD-TYPE 41 173 135

Figure S1156.  Get High-res Image Gene #361: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C9ORF131 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.2

Table S3792.  Gene #361: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C9ORF131 MUTATED 3 0 6
C9ORF131 WILD-TYPE 59 73 69

Figure S1157.  Get High-res Image Gene #361: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C9ORF131 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S3793.  Gene #361: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C9ORF131 MUTATED 0 5 5
C9ORF131 WILD-TYPE 70 115 95
'C9ORF131 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.78

Table S3794.  Gene #361: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C9ORF131 MUTATED 1 0 1 3 0 4 0 0 1
C9ORF131 WILD-TYPE 40 26 29 26 39 65 20 14 21
'C9ORF131 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.19

Table S3795.  Gene #361: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C9ORF131 MUTATED 0 5 4 4
C9ORF131 WILD-TYPE 100 67 68 117

Figure S1158.  Get High-res Image Gene #361: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C9ORF131 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00311 (Fisher's exact test), Q value = 0.049

Table S3796.  Gene #361: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C9ORF131 MUTATED 1 0 8 2 2
C9ORF131 WILD-TYPE 58 75 66 117 36

Figure S1159.  Get High-res Image Gene #361: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.23

Table S3797.  Gene #361: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C9ORF131 MUTATED 0 7 2 1 2
C9ORF131 WILD-TYPE 51 69 59 70 93

Figure S1160.  Get High-res Image Gene #361: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00575 (Fisher's exact test), Q value = 0.072

Table S3798.  Gene #361: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C9ORF131 MUTATED 2 3 0 4 1 1 0 1 0
C9ORF131 WILD-TYPE 67 45 39 12 52 19 21 37 50

Figure S1161.  Get High-res Image Gene #361: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C12ORF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S3799.  Gene #362: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C12ORF10 MUTATED 0 1 3
C12ORF10 WILD-TYPE 42 172 144
'C12ORF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0359 (Fisher's exact test), Q value = 0.2

Table S3800.  Gene #362: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C12ORF10 MUTATED 0 0 4
C12ORF10 WILD-TYPE 62 73 71

Figure S1162.  Get High-res Image Gene #362: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C12ORF10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S3801.  Gene #362: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C12ORF10 MUTATED 1 2 0
C12ORF10 WILD-TYPE 69 118 100
'C12ORF10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S3802.  Gene #362: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C12ORF10 MUTATED 0 0 0 1 0 0 2 0 0
C12ORF10 WILD-TYPE 41 26 30 28 39 69 18 14 22

Figure S1163.  Get High-res Image Gene #362: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'C12ORF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S3803.  Gene #362: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C12ORF10 MUTATED 1 2 1 0
C12ORF10 WILD-TYPE 99 70 71 121
'C12ORF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S3804.  Gene #362: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C12ORF10 MUTATED 0 2 2 0 0
C12ORF10 WILD-TYPE 59 73 72 119 38
'C12ORF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 0.27

Table S3805.  Gene #362: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C12ORF10 MUTATED 1 3 0 0 0
C12ORF10 WILD-TYPE 50 73 61 71 95
'C12ORF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.5

Table S3806.  Gene #362: 'C12ORF10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C12ORF10 MUTATED 1 1 0 1 0 1 0 0 0
C12ORF10 WILD-TYPE 68 47 39 15 53 19 21 38 50
'NUP54 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0592 (Fisher's exact test), Q value = 0.26

Table S3807.  Gene #363: 'NUP54 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NUP54 MUTATED 2 1 5
NUP54 WILD-TYPE 40 172 142
'NUP54 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S3808.  Gene #363: 'NUP54 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NUP54 MUTATED 3 2 2
NUP54 WILD-TYPE 59 71 73
'NUP54 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S3809.  Gene #363: 'NUP54 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NUP54 MUTATED 1 4 3
NUP54 WILD-TYPE 69 116 97
'NUP54 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.95

Table S3810.  Gene #363: 'NUP54 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NUP54 MUTATED 1 1 1 2 0 2 0 1 0
NUP54 WILD-TYPE 40 25 29 27 39 67 20 13 22
'NUP54 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S3811.  Gene #363: 'NUP54 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NUP54 MUTATED 3 3 0 2
NUP54 WILD-TYPE 97 69 72 119
'NUP54 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S3812.  Gene #363: 'NUP54 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NUP54 MUTATED 1 2 3 2 0
NUP54 WILD-TYPE 58 73 71 117 38
'NUP54 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3813.  Gene #363: 'NUP54 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NUP54 MUTATED 1 2 1 2 2
NUP54 WILD-TYPE 50 74 60 69 93
'NUP54 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.55

Table S3814.  Gene #363: 'NUP54 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NUP54 MUTATED 5 0 0 0 1 1 0 0 1
NUP54 WILD-TYPE 64 48 39 16 52 19 21 38 49
'NUP54 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S3815.  Gene #363: 'NUP54 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NUP54 MUTATED 0 1 1 1 0 0
NUP54 WILD-TYPE 13 15 13 10 11 9
'NUP54 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S3816.  Gene #363: 'NUP54 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NUP54 MUTATED 1 0 0 0 1 0 1 0 0
NUP54 WILD-TYPE 10 7 7 9 7 7 10 9 5
'PLEKHA6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0044 (Fisher's exact test), Q value = 0.061

Table S3817.  Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PLEKHA6 MUTATED 6 0 1 0 0
PLEKHA6 WILD-TYPE 26 18 45 27 23

Figure S1164.  Get High-res Image Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00544 (Fisher's exact test), Q value = 0.07

Table S3818.  Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PLEKHA6 MUTATED 6 1 0
PLEKHA6 WILD-TYPE 37 66 36

Figure S1165.  Get High-res Image Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PLEKHA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S3819.  Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PLEKHA6 MUTATED 1 0 17
PLEKHA6 WILD-TYPE 41 173 130

Figure S1166.  Get High-res Image Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00797 (Fisher's exact test), Q value = 0.084

Table S3820.  Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PLEKHA6 MUTATED 4 0 8
PLEKHA6 WILD-TYPE 58 73 67

Figure S1167.  Get High-res Image Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.083 (Fisher's exact test), Q value = 0.31

Table S3821.  Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PLEKHA6 MUTATED 1 5 9
PLEKHA6 WILD-TYPE 69 115 91
'PLEKHA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S3822.  Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PLEKHA6 MUTATED 0 1 0 2 2 8 2 0 0
PLEKHA6 WILD-TYPE 41 25 30 27 37 61 18 14 22
'PLEKHA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00146 (Fisher's exact test), Q value = 0.032

Table S3823.  Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PLEKHA6 MUTATED 0 9 3 7
PLEKHA6 WILD-TYPE 100 63 69 114

Figure S1168.  Get High-res Image Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S3824.  Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PLEKHA6 MUTATED 0 0 12 3 4
PLEKHA6 WILD-TYPE 59 75 62 116 34

Figure S1169.  Get High-res Image Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00073 (Fisher's exact test), Q value = 0.02

Table S3825.  Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PLEKHA6 MUTATED 0 11 1 1 5
PLEKHA6 WILD-TYPE 51 65 60 70 90

Figure S1170.  Get High-res Image Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00043 (Fisher's exact test), Q value = 0.015

Table S3826.  Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PLEKHA6 MUTATED 3 3 0 5 1 0 2 4 0
PLEKHA6 WILD-TYPE 66 45 39 11 52 20 19 34 50

Figure S1171.  Get High-res Image Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00069 (Fisher's exact test), Q value = 0.02

Table S3827.  Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PLEKHA6 MUTATED 0 0 0 0 4 0
PLEKHA6 WILD-TYPE 13 16 14 11 7 9

Figure S1172.  Get High-res Image Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.15

Table S3828.  Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PLEKHA6 MUTATED 0 0 0 3 0 1 0 0 0
PLEKHA6 WILD-TYPE 11 7 7 6 8 6 11 9 5

Figure S1173.  Get High-res Image Gene #364: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CYP4X1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.56

Table S3829.  Gene #365: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CYP4X1 MUTATED 0 1 4
CYP4X1 WILD-TYPE 42 172 143
'CYP4X1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S3830.  Gene #365: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CYP4X1 MUTATED 3 0 2
CYP4X1 WILD-TYPE 59 73 73
'CYP4X1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3831.  Gene #365: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CYP4X1 MUTATED 1 2 1
CYP4X1 WILD-TYPE 69 118 99
'CYP4X1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S3832.  Gene #365: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CYP4X1 MUTATED 1 0 0 0 0 0 0 2 1
CYP4X1 WILD-TYPE 40 26 30 29 39 69 20 12 21

Figure S1174.  Get High-res Image Gene #365: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CYP4X1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 0.14

Table S3833.  Gene #365: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CYP4X1 MUTATED 0 3 2 0
CYP4X1 WILD-TYPE 100 69 70 121

Figure S1175.  Get High-res Image Gene #365: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CYP4X1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S3834.  Gene #365: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CYP4X1 MUTATED 2 1 2 0 0
CYP4X1 WILD-TYPE 57 74 72 119 38
'CYP4X1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S3835.  Gene #365: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CYP4X1 MUTATED 1 2 2 0 0
CYP4X1 WILD-TYPE 50 74 59 71 95
'CYP4X1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S3836.  Gene #365: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CYP4X1 MUTATED 1 2 0 1 0 1 0 0 0
CYP4X1 WILD-TYPE 68 46 39 15 53 19 21 38 50
'DAXX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S3837.  Gene #366: 'DAXX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DAXX MUTATED 0 6 6
DAXX WILD-TYPE 42 167 141
'DAXX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S3838.  Gene #366: 'DAXX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DAXX MUTATED 4 5 3
DAXX WILD-TYPE 58 68 72
'DAXX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00666 (Fisher's exact test), Q value = 0.076

Table S3839.  Gene #366: 'DAXX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DAXX MUTATED 0 3 9
DAXX WILD-TYPE 70 117 91

Figure S1176.  Get High-res Image Gene #366: 'DAXX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DAXX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S3840.  Gene #366: 'DAXX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DAXX MUTATED 2 1 0 0 0 6 2 1 0
DAXX WILD-TYPE 39 25 30 29 39 63 18 13 22
'DAXX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.18

Table S3841.  Gene #366: 'DAXX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DAXX MUTATED 5 3 4 0
DAXX WILD-TYPE 95 69 68 121

Figure S1177.  Get High-res Image Gene #366: 'DAXX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DAXX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00901 (Fisher's exact test), Q value = 0.089

Table S3842.  Gene #366: 'DAXX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DAXX MUTATED 4 3 5 0 0
DAXX WILD-TYPE 55 72 69 119 38

Figure S1178.  Get High-res Image Gene #366: 'DAXX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DAXX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00145 (Fisher's exact test), Q value = 0.032

Table S3843.  Gene #366: 'DAXX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DAXX MUTATED 3 7 2 0 0
DAXX WILD-TYPE 48 69 59 71 95

Figure S1179.  Get High-res Image Gene #366: 'DAXX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DAXX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0472 (Fisher's exact test), Q value = 0.23

Table S3844.  Gene #366: 'DAXX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DAXX MUTATED 2 5 1 2 1 1 0 0 0
DAXX WILD-TYPE 67 43 38 14 52 19 21 38 50

Figure S1180.  Get High-res Image Gene #366: 'DAXX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DAXX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.65

Table S3845.  Gene #366: 'DAXX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DAXX MUTATED 0 1 0 1 2 0
DAXX WILD-TYPE 13 15 14 10 9 9
'DAXX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S3846.  Gene #366: 'DAXX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DAXX MUTATED 0 1 0 1 0 0 2 0 0
DAXX WILD-TYPE 11 6 7 8 8 7 9 9 5
'CDK17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00152 (Fisher's exact test), Q value = 0.032

Table S3847.  Gene #367: 'CDK17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CDK17 MUTATED 0 0 0 4 0
CDK17 WILD-TYPE 32 18 46 23 23

Figure S1181.  Get High-res Image Gene #367: 'CDK17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDK17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S3848.  Gene #367: 'CDK17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CDK17 MUTATED 2 2 0
CDK17 WILD-TYPE 41 65 36
'CDK17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S3849.  Gene #367: 'CDK17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CDK17 MUTATED 3 1 7
CDK17 WILD-TYPE 39 172 140

Figure S1182.  Get High-res Image Gene #367: 'CDK17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDK17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S3850.  Gene #367: 'CDK17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CDK17 MUTATED 2 1 4
CDK17 WILD-TYPE 60 72 71
'CDK17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S3851.  Gene #367: 'CDK17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CDK17 MUTATED 1 3 4
CDK17 WILD-TYPE 69 117 96
'CDK17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S3852.  Gene #367: 'CDK17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CDK17 MUTATED 0 0 1 2 0 4 0 1 0
CDK17 WILD-TYPE 41 26 29 27 39 65 20 13 22
'CDK17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S3853.  Gene #367: 'CDK17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CDK17 MUTATED 2 4 1 3
CDK17 WILD-TYPE 98 68 71 118
'CDK17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0498 (Fisher's exact test), Q value = 0.24

Table S3854.  Gene #367: 'CDK17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CDK17 MUTATED 0 2 5 1 2
CDK17 WILD-TYPE 59 73 69 118 36

Figure S1183.  Get High-res Image Gene #367: 'CDK17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDK17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 0.33

Table S3855.  Gene #367: 'CDK17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CDK17 MUTATED 0 6 1 1 2
CDK17 WILD-TYPE 51 70 60 70 93
'CDK17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S3856.  Gene #367: 'CDK17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CDK17 MUTATED 3 1 0 2 1 1 1 0 1
CDK17 WILD-TYPE 66 47 39 14 52 19 20 38 49
'CDK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S3857.  Gene #367: 'CDK17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CDK17 MUTATED 0 0 1 0 2 0
CDK17 WILD-TYPE 13 16 13 11 9 9
'CDK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S3858.  Gene #367: 'CDK17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CDK17 MUTATED 0 0 0 1 1 0 1 0 0
CDK17 WILD-TYPE 11 7 7 8 7 7 10 9 5
'SYNCRIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S3859.  Gene #368: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SYNCRIP MUTATED 1 4 5
SYNCRIP WILD-TYPE 41 169 142
'SYNCRIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 0.19

Table S3860.  Gene #368: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SYNCRIP MUTATED 5 0 3
SYNCRIP WILD-TYPE 57 73 72

Figure S1184.  Get High-res Image Gene #368: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SYNCRIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3861.  Gene #368: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SYNCRIP MUTATED 2 4 4
SYNCRIP WILD-TYPE 68 116 96
'SYNCRIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.86

Table S3862.  Gene #368: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SYNCRIP MUTATED 1 1 2 0 1 2 2 1 0
SYNCRIP WILD-TYPE 40 25 28 29 38 67 18 13 22
'SYNCRIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S3863.  Gene #368: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SYNCRIP MUTATED 1 3 4 2
SYNCRIP WILD-TYPE 99 69 68 119
'SYNCRIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S3864.  Gene #368: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SYNCRIP MUTATED 4 1 3 2 0
SYNCRIP WILD-TYPE 55 74 71 117 38
'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S3865.  Gene #368: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SYNCRIP MUTATED 1 4 3 0 1
SYNCRIP WILD-TYPE 50 72 58 71 94
'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S3866.  Gene #368: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SYNCRIP MUTATED 1 3 1 1 2 1 0 0 0
SYNCRIP WILD-TYPE 68 45 38 15 51 19 21 38 50
'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0957 (Fisher's exact test), Q value = 0.34

Table S3867.  Gene #368: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SYNCRIP MUTATED 0 0 0 2 1 0
SYNCRIP WILD-TYPE 13 16 14 9 10 9
'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0415 (Fisher's exact test), Q value = 0.21

Table S3868.  Gene #368: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SYNCRIP MUTATED 0 0 0 0 0 0 3 0 0
SYNCRIP WILD-TYPE 11 7 7 9 8 7 8 9 5

Figure S1185.  Get High-res Image Gene #368: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ENPEP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 0.2

Table S3869.  Gene #369: 'ENPEP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ENPEP MUTATED 3 0 0 3 0
ENPEP WILD-TYPE 29 18 46 24 23

Figure S1186.  Get High-res Image Gene #369: 'ENPEP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ENPEP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S3870.  Gene #369: 'ENPEP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ENPEP MUTATED 3 3 0
ENPEP WILD-TYPE 40 64 36
'ENPEP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S3871.  Gene #369: 'ENPEP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ENPEP MUTATED 1 5 15
ENPEP WILD-TYPE 41 168 132

Figure S1187.  Get High-res Image Gene #369: 'ENPEP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ENPEP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 0.29

Table S3872.  Gene #369: 'ENPEP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ENPEP MUTATED 8 2 5
ENPEP WILD-TYPE 54 71 70
'ENPEP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S3873.  Gene #369: 'ENPEP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ENPEP MUTATED 5 7 5
ENPEP WILD-TYPE 65 113 95
'ENPEP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S3874.  Gene #369: 'ENPEP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ENPEP MUTATED 2 2 2 1 3 1 3 1 2
ENPEP WILD-TYPE 39 24 28 28 36 68 17 13 20
'ENPEP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.46

Table S3875.  Gene #369: 'ENPEP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ENPEP MUTATED 2 6 6 7
ENPEP WILD-TYPE 98 66 66 114
'ENPEP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0862 (Fisher's exact test), Q value = 0.32

Table S3876.  Gene #369: 'ENPEP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ENPEP MUTATED 3 3 8 3 4
ENPEP WILD-TYPE 56 72 66 116 34
'ENPEP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S3877.  Gene #369: 'ENPEP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ENPEP MUTATED 3 5 4 2 7
ENPEP WILD-TYPE 48 71 57 69 88
'ENPEP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S3878.  Gene #369: 'ENPEP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ENPEP MUTATED 5 4 1 1 3 1 0 5 1
ENPEP WILD-TYPE 64 44 38 15 50 19 21 33 49
'ENPEP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S3879.  Gene #369: 'ENPEP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ENPEP MUTATED 0 2 2 1 1 1
ENPEP WILD-TYPE 13 14 12 10 10 8
'ENPEP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S3880.  Gene #369: 'ENPEP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ENPEP MUTATED 1 1 0 0 2 0 2 1 0
ENPEP WILD-TYPE 10 6 7 9 6 7 9 8 5
'C6ORF89 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.25

Table S3881.  Gene #370: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C6ORF89 MUTATED 3 0 0 0 0
C6ORF89 WILD-TYPE 29 18 46 27 23
'C6ORF89 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S3882.  Gene #370: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C6ORF89 MUTATED 2 0 1
C6ORF89 WILD-TYPE 41 67 35
'C6ORF89 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S3883.  Gene #370: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C6ORF89 MUTATED 1 1 4
C6ORF89 WILD-TYPE 41 172 143
'C6ORF89 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S3884.  Gene #370: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C6ORF89 MUTATED 2 1 0
C6ORF89 WILD-TYPE 60 72 75
'C6ORF89 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S3885.  Gene #370: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C6ORF89 MUTATED 2 1 1
C6ORF89 WILD-TYPE 68 119 99
'C6ORF89 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S3886.  Gene #370: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C6ORF89 MUTATED 0 0 0 0 1 2 0 0 1
C6ORF89 WILD-TYPE 41 26 30 29 38 67 20 14 21
'C6ORF89 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S3887.  Gene #370: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C6ORF89 MUTATED 1 0 2 3
C6ORF89 WILD-TYPE 99 72 70 118
'C6ORF89 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S3888.  Gene #370: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C6ORF89 MUTATED 2 0 1 1 2
C6ORF89 WILD-TYPE 57 75 73 118 36
'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.88

Table S3889.  Gene #370: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C6ORF89 MUTATED 0 1 1 3 1
C6ORF89 WILD-TYPE 51 75 60 68 94
'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S3890.  Gene #370: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C6ORF89 MUTATED 2 1 0 0 2 0 0 1 0
C6ORF89 WILD-TYPE 67 47 39 16 51 20 21 37 50
'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S3891.  Gene #370: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C6ORF89 MUTATED 0 2 0 1 0 0
C6ORF89 WILD-TYPE 13 14 14 10 11 9
'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S3892.  Gene #370: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C6ORF89 MUTATED 1 1 0 0 0 0 1 0 0
C6ORF89 WILD-TYPE 10 6 7 9 8 7 10 9 5
'USP7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0748 (Fisher's exact test), Q value = 0.3

Table S3893.  Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
USP7 MUTATED 3 0 0 2 0
USP7 WILD-TYPE 29 18 46 25 23
'USP7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S3894.  Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
USP7 MUTATED 3 1 1
USP7 WILD-TYPE 40 66 35
'USP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00044 (Fisher's exact test), Q value = 0.015

Table S3895.  Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
USP7 MUTATED 1 4 19
USP7 WILD-TYPE 41 169 128

Figure S1188.  Get High-res Image Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S3896.  Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
USP7 MUTATED 7 3 7
USP7 WILD-TYPE 55 70 68
'USP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0619 (Fisher's exact test), Q value = 0.27

Table S3897.  Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
USP7 MUTATED 1 9 10
USP7 WILD-TYPE 69 111 90
'USP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S3898.  Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
USP7 MUTATED 1 4 3 2 1 9 0 0 0
USP7 WILD-TYPE 40 22 27 27 38 60 20 14 22
'USP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.16

Table S3899.  Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
USP7 MUTATED 2 10 5 7
USP7 WILD-TYPE 98 62 67 114

Figure S1189.  Get High-res Image Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'USP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0098 (Fisher's exact test), Q value = 0.093

Table S3900.  Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
USP7 MUTATED 1 6 10 3 4
USP7 WILD-TYPE 58 69 64 116 34

Figure S1190.  Get High-res Image Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.097

Table S3901.  Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
USP7 MUTATED 3 11 1 1 7
USP7 WILD-TYPE 48 65 60 70 88

Figure S1191.  Get High-res Image Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'USP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00076 (Fisher's exact test), Q value = 0.021

Table S3902.  Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
USP7 MUTATED 4 3 0 5 1 5 1 2 2
USP7 WILD-TYPE 65 45 39 11 52 15 20 36 48

Figure S1192.  Get High-res Image Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'USP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00618 (Fisher's exact test), Q value = 0.074

Table S3903.  Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
USP7 MUTATED 0 0 0 0 3 0
USP7 WILD-TYPE 13 16 14 11 8 9

Figure S1193.  Get High-res Image Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'USP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S3904.  Gene #371: 'USP7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
USP7 MUTATED 0 0 0 2 0 0 1 0 0
USP7 WILD-TYPE 11 7 7 7 8 7 10 9 5
'CCAR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 0.28

Table S3905.  Gene #372: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CCAR1 MUTATED 3 0 0 0 1
CCAR1 WILD-TYPE 29 18 46 27 22
'CCAR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S3906.  Gene #372: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CCAR1 MUTATED 2 0 2
CCAR1 WILD-TYPE 41 67 34
'CCAR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.21

Table S3907.  Gene #372: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCAR1 MUTATED 2 4 12
CCAR1 WILD-TYPE 40 169 135

Figure S1194.  Get High-res Image Gene #372: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCAR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 0.17

Table S3908.  Gene #372: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCAR1 MUTATED 8 1 5
CCAR1 WILD-TYPE 54 72 70

Figure S1195.  Get High-res Image Gene #372: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CCAR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S3909.  Gene #372: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCAR1 MUTATED 1 6 7
CCAR1 WILD-TYPE 69 114 93
'CCAR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.55

Table S3910.  Gene #372: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCAR1 MUTATED 3 2 0 3 0 4 2 0 0
CCAR1 WILD-TYPE 38 24 30 26 39 65 18 14 22
'CCAR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S3911.  Gene #372: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCAR1 MUTATED 3 5 5 5
CCAR1 WILD-TYPE 97 67 67 116
'CCAR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S3912.  Gene #372: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCAR1 MUTATED 2 4 7 3 2
CCAR1 WILD-TYPE 57 71 67 116 36
'CCAR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S3913.  Gene #372: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCAR1 MUTATED 2 7 1 4 4
CCAR1 WILD-TYPE 49 69 60 67 91
'CCAR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S3914.  Gene #372: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCAR1 MUTATED 6 2 2 1 1 1 0 2 3
CCAR1 WILD-TYPE 63 46 37 15 52 19 21 36 47
'CCAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.72

Table S3915.  Gene #372: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CCAR1 MUTATED 0 2 2 0 2 0
CCAR1 WILD-TYPE 13 14 12 11 9 9
'CCAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.97

Table S3916.  Gene #372: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CCAR1 MUTATED 0 1 1 1 0 1 2 0 0
CCAR1 WILD-TYPE 11 6 6 8 8 6 9 9 5
'SLC7A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0063 (Fisher's exact test), Q value = 0.074

Table S3917.  Gene #373: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC7A10 MUTATED 1 0 7
SLC7A10 WILD-TYPE 41 173 140

Figure S1196.  Get High-res Image Gene #373: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC7A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S3918.  Gene #373: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC7A10 MUTATED 3 0 3
SLC7A10 WILD-TYPE 59 73 72
'SLC7A10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S3919.  Gene #373: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC7A10 MUTATED 0 5 3
SLC7A10 WILD-TYPE 70 115 97
'SLC7A10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.94

Table S3920.  Gene #373: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC7A10 MUTATED 0 1 0 2 2 3 0 0 0
SLC7A10 WILD-TYPE 41 25 30 27 37 66 20 14 22
'SLC7A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S3921.  Gene #373: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC7A10 MUTATED 0 3 3 2
SLC7A10 WILD-TYPE 100 69 69 119
'SLC7A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.012

Table S3922.  Gene #373: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC7A10 MUTATED 0 0 6 0 2
SLC7A10 WILD-TYPE 59 75 68 119 36

Figure S1197.  Get High-res Image Gene #373: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 0.29

Table S3923.  Gene #373: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC7A10 MUTATED 0 5 1 0 2
SLC7A10 WILD-TYPE 51 71 60 71 93
'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00062 (Fisher's exact test), Q value = 0.018

Table S3924.  Gene #373: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC7A10 MUTATED 0 3 0 3 0 0 0 2 0
SLC7A10 WILD-TYPE 69 45 39 13 53 20 21 36 50

Figure S1198.  Get High-res Image Gene #373: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S3925.  Gene #373: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLC7A10 MUTATED 0 0 1 0 2 0
SLC7A10 WILD-TYPE 13 16 13 11 9 9
'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.42

Table S3926.  Gene #373: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLC7A10 MUTATED 0 0 0 2 0 1 0 0 0
SLC7A10 WILD-TYPE 11 7 7 7 8 6 11 9 5
'GTF2IRD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.35

Table S3927.  Gene #374: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GTF2IRD2 MUTATED 2 1 3
GTF2IRD2 WILD-TYPE 40 172 144
'GTF2IRD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S3928.  Gene #374: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GTF2IRD2 MUTATED 3 1 2
GTF2IRD2 WILD-TYPE 59 72 73
'GTF2IRD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0017 (Fisher's exact test), Q value = 0.034

Table S3929.  Gene #374: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GTF2IRD2 MUTATED 0 0 6
GTF2IRD2 WILD-TYPE 70 120 94

Figure S1199.  Get High-res Image Gene #374: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GTF2IRD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.77

Table S3930.  Gene #374: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GTF2IRD2 MUTATED 3 0 0 0 0 2 0 0 1
GTF2IRD2 WILD-TYPE 38 26 30 29 39 67 20 14 21
'GTF2IRD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0708 (Fisher's exact test), Q value = 0.29

Table S3931.  Gene #374: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GTF2IRD2 MUTATED 1 2 3 0
GTF2IRD2 WILD-TYPE 99 70 69 121
'GTF2IRD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00535 (Fisher's exact test), Q value = 0.069

Table S3932.  Gene #374: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GTF2IRD2 MUTATED 4 0 2 0 0
GTF2IRD2 WILD-TYPE 55 75 72 119 38

Figure S1200.  Get High-res Image Gene #374: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GTF2IRD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S3933.  Gene #374: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GTF2IRD2 MUTATED 2 2 2 0 0
GTF2IRD2 WILD-TYPE 49 74 59 71 95
'GTF2IRD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S3934.  Gene #374: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GTF2IRD2 MUTATED 2 2 0 1 1 0 0 0 0
GTF2IRD2 WILD-TYPE 67 46 39 15 52 20 21 38 50
'TIFA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S3935.  Gene #375: 'TIFA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TIFA MUTATED 1 3 2
TIFA WILD-TYPE 41 170 145
'TIFA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.86

Table S3936.  Gene #375: 'TIFA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TIFA MUTATED 1 3 1
TIFA WILD-TYPE 61 70 74
'TIFA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3937.  Gene #375: 'TIFA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TIFA MUTATED 1 2 1
TIFA WILD-TYPE 69 118 99
'TIFA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S3938.  Gene #375: 'TIFA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TIFA MUTATED 0 0 0 1 1 1 0 0 1
TIFA WILD-TYPE 41 26 30 28 38 68 20 14 21
'TIFA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S3939.  Gene #375: 'TIFA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TIFA MUTATED 2 1 2 1
TIFA WILD-TYPE 98 71 70 120
'TIFA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S3940.  Gene #375: 'TIFA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TIFA MUTATED 2 2 1 1 0
TIFA WILD-TYPE 57 73 73 118 38
'TIFA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S3941.  Gene #375: 'TIFA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TIFA MUTATED 2 2 1 1 0
TIFA WILD-TYPE 49 74 60 70 95
'TIFA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S3942.  Gene #375: 'TIFA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TIFA MUTATED 1 0 1 1 3 0 0 0 0
TIFA WILD-TYPE 68 48 38 15 50 20 21 38 50
'MFN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S3943.  Gene #376: 'MFN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MFN1 MUTATED 1 4 8
MFN1 WILD-TYPE 41 169 139
'MFN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S3944.  Gene #376: 'MFN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MFN1 MUTATED 2 4 6
MFN1 WILD-TYPE 60 69 69
'MFN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.25

Table S3945.  Gene #376: 'MFN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MFN1 MUTATED 0 4 7
MFN1 WILD-TYPE 70 116 93
'MFN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0197 (Fisher's exact test), Q value = 0.14

Table S3946.  Gene #376: 'MFN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MFN1 MUTATED 1 0 0 5 0 5 0 0 0
MFN1 WILD-TYPE 40 26 30 24 39 64 20 14 22

Figure S1201.  Get High-res Image Gene #376: 'MFN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MFN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0497 (Fisher's exact test), Q value = 0.24

Table S3947.  Gene #376: 'MFN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MFN1 MUTATED 3 3 6 1
MFN1 WILD-TYPE 97 69 66 120

Figure S1202.  Get High-res Image Gene #376: 'MFN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MFN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00384 (Fisher's exact test), Q value = 0.055

Table S3948.  Gene #376: 'MFN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MFN1 MUTATED 1 4 7 0 1
MFN1 WILD-TYPE 58 71 67 119 37

Figure S1203.  Get High-res Image Gene #376: 'MFN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MFN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S3949.  Gene #376: 'MFN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MFN1 MUTATED 2 6 3 1 1
MFN1 WILD-TYPE 49 70 58 70 94
'MFN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.61

Table S3950.  Gene #376: 'MFN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MFN1 MUTATED 2 5 1 1 2 1 0 1 0
MFN1 WILD-TYPE 67 43 38 15 51 19 21 37 50
'MFN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.76

Table S3951.  Gene #376: 'MFN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MFN1 MUTATED 2 0 1 1 2 0
MFN1 WILD-TYPE 11 16 13 10 9 9
'MFN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S3952.  Gene #376: 'MFN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MFN1 MUTATED 0 0 1 1 1 0 2 0 1
MFN1 WILD-TYPE 11 7 6 8 7 7 9 9 4
'AMOT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0084

Table S3953.  Gene #377: 'AMOT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AMOT MUTATED 2 0 11
AMOT WILD-TYPE 40 173 136

Figure S1204.  Get High-res Image Gene #377: 'AMOT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AMOT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S3954.  Gene #377: 'AMOT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AMOT MUTATED 4 1 5
AMOT WILD-TYPE 58 72 70
'AMOT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S3955.  Gene #377: 'AMOT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AMOT MUTATED 3 4 5
AMOT WILD-TYPE 67 116 95
'AMOT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.73

Table S3956.  Gene #377: 'AMOT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AMOT MUTATED 1 1 0 2 2 3 3 0 0
AMOT WILD-TYPE 40 25 30 27 37 66 17 14 22
'AMOT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S3957.  Gene #377: 'AMOT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AMOT MUTATED 2 5 4 2
AMOT WILD-TYPE 98 67 68 119
'AMOT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00403 (Fisher's exact test), Q value = 0.057

Table S3958.  Gene #377: 'AMOT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AMOT MUTATED 1 3 7 0 2
AMOT WILD-TYPE 58 72 67 119 36

Figure S1205.  Get High-res Image Gene #377: 'AMOT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AMOT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S3959.  Gene #377: 'AMOT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AMOT MUTATED 1 5 1 1 4
AMOT WILD-TYPE 50 71 60 70 91
'AMOT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S3960.  Gene #377: 'AMOT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AMOT MUTATED 3 2 1 1 1 0 1 2 1
AMOT WILD-TYPE 66 46 38 15 52 20 20 36 49
'ZNF449 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00104 (Fisher's exact test), Q value = 0.025

Table S3961.  Gene #378: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF449 MUTATED 1 0 9
ZNF449 WILD-TYPE 41 173 138

Figure S1206.  Get High-res Image Gene #378: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF449 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00943 (Fisher's exact test), Q value = 0.091

Table S3962.  Gene #378: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF449 MUTATED 2 0 7
ZNF449 WILD-TYPE 60 73 68

Figure S1207.  Get High-res Image Gene #378: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZNF449 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S3963.  Gene #378: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF449 MUTATED 1 3 5
ZNF449 WILD-TYPE 69 117 95
'ZNF449 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S3964.  Gene #378: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF449 MUTATED 1 0 0 2 0 4 1 1 0
ZNF449 WILD-TYPE 40 26 30 27 39 65 19 13 22
'ZNF449 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 0.21

Table S3965.  Gene #378: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF449 MUTATED 1 5 3 1
ZNF449 WILD-TYPE 99 67 69 120

Figure S1208.  Get High-res Image Gene #378: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF449 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00233 (Fisher's exact test), Q value = 0.041

Table S3966.  Gene #378: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF449 MUTATED 1 1 7 0 1
ZNF449 WILD-TYPE 58 74 67 119 37

Figure S1209.  Get High-res Image Gene #378: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF449 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00047 (Fisher's exact test), Q value = 0.015

Table S3967.  Gene #378: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF449 MUTATED 0 7 2 0 0
ZNF449 WILD-TYPE 51 69 59 71 95

Figure S1210.  Get High-res Image Gene #378: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ZNF449 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 0.14

Table S3968.  Gene #378: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF449 MUTATED 1 3 1 3 1 0 0 0 0
ZNF449 WILD-TYPE 68 45 38 13 52 20 21 38 50

Figure S1211.  Get High-res Image Gene #378: 'ZNF449 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SMARCA4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S3969.  Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SMARCA4 MUTATED 3 0 1 2 1
SMARCA4 WILD-TYPE 29 18 45 25 22
'SMARCA4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S3970.  Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SMARCA4 MUTATED 3 4 0
SMARCA4 WILD-TYPE 40 63 36
'SMARCA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00481 (Fisher's exact test), Q value = 0.064

Table S3971.  Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SMARCA4 MUTATED 4 6 19
SMARCA4 WILD-TYPE 38 167 128

Figure S1212.  Get High-res Image Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SMARCA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.19

Table S3972.  Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SMARCA4 MUTATED 11 3 9
SMARCA4 WILD-TYPE 51 70 66

Figure S1213.  Get High-res Image Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SMARCA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S3973.  Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SMARCA4 MUTATED 4 9 11
SMARCA4 WILD-TYPE 66 111 89
'SMARCA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S3974.  Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SMARCA4 MUTATED 4 3 1 2 3 7 3 1 0
SMARCA4 WILD-TYPE 37 23 29 27 36 62 17 13 22
'SMARCA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0688 (Fisher's exact test), Q value = 0.28

Table S3975.  Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SMARCA4 MUTATED 4 9 9 7
SMARCA4 WILD-TYPE 96 63 63 114
'SMARCA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00628 (Fisher's exact test), Q value = 0.074

Table S3976.  Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SMARCA4 MUTATED 6 2 13 5 3
SMARCA4 WILD-TYPE 53 73 61 114 35

Figure S1214.  Get High-res Image Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00113 (Fisher's exact test), Q value = 0.027

Table S3977.  Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SMARCA4 MUTATED 2 13 6 0 9
SMARCA4 WILD-TYPE 49 63 55 71 86

Figure S1215.  Get High-res Image Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00316 (Fisher's exact test), Q value = 0.049

Table S3978.  Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SMARCA4 MUTATED 2 8 1 5 5 3 0 4 2
SMARCA4 WILD-TYPE 67 40 38 11 48 17 21 34 48

Figure S1216.  Get High-res Image Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S3979.  Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SMARCA4 MUTATED 0 1 2 1 5 0
SMARCA4 WILD-TYPE 13 15 12 10 6 9

Figure S1217.  Get High-res Image Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0399 (Fisher's exact test), Q value = 0.21

Table S3980.  Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SMARCA4 MUTATED 0 0 0 3 1 3 2 0 0
SMARCA4 WILD-TYPE 11 7 7 6 7 4 9 9 5

Figure S1218.  Get High-res Image Gene #379: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IGFBP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3981.  Gene #380: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IGFBP7 MUTATED 0 2 1
IGFBP7 WILD-TYPE 42 171 146
'IGFBP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S3982.  Gene #380: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IGFBP7 MUTATED 1 2 0
IGFBP7 WILD-TYPE 61 71 75
'IGFBP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S3983.  Gene #380: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IGFBP7 MUTATED 0 1 3
IGFBP7 WILD-TYPE 70 119 97
'IGFBP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S3984.  Gene #380: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IGFBP7 MUTATED 0 0 0 0 0 2 1 0 1
IGFBP7 WILD-TYPE 41 26 30 29 39 67 19 14 21
'IGFBP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S3985.  Gene #380: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IGFBP7 MUTATED 1 0 2 1
IGFBP7 WILD-TYPE 99 72 70 120
'IGFBP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0921 (Fisher's exact test), Q value = 0.33

Table S3986.  Gene #380: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IGFBP7 MUTATED 2 1 0 0 1
IGFBP7 WILD-TYPE 57 74 74 119 37
'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S3987.  Gene #380: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IGFBP7 MUTATED 2 0 1 0 1
IGFBP7 WILD-TYPE 49 76 60 71 94
'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.74

Table S3988.  Gene #380: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IGFBP7 MUTATED 0 1 0 0 1 1 0 1 0
IGFBP7 WILD-TYPE 69 47 39 16 52 19 21 37 50
'MARK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00803 (Fisher's exact test), Q value = 0.084

Table S3989.  Gene #381: 'MARK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MARK1 MUTATED 5 0 0 1 0
MARK1 WILD-TYPE 27 18 46 26 23

Figure S1219.  Get High-res Image Gene #381: 'MARK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MARK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S3990.  Gene #381: 'MARK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MARK1 MUTATED 4 1 1
MARK1 WILD-TYPE 39 66 35
'MARK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.17

Table S3991.  Gene #381: 'MARK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MARK1 MUTATED 3 6 16
MARK1 WILD-TYPE 39 167 131

Figure S1220.  Get High-res Image Gene #381: 'MARK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MARK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.76

Table S3992.  Gene #381: 'MARK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MARK1 MUTATED 7 4 8
MARK1 WILD-TYPE 55 69 67
'MARK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S3993.  Gene #381: 'MARK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MARK1 MUTATED 2 8 7
MARK1 WILD-TYPE 68 112 93
'MARK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S3994.  Gene #381: 'MARK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MARK1 MUTATED 4 2 0 2 1 3 1 1 3
MARK1 WILD-TYPE 37 24 30 27 38 66 19 13 19
'MARK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S3995.  Gene #381: 'MARK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MARK1 MUTATED 6 8 4 7
MARK1 WILD-TYPE 94 64 68 114
'MARK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S3996.  Gene #381: 'MARK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MARK1 MUTATED 5 6 6 4 4
MARK1 WILD-TYPE 54 69 68 115 34
'MARK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S3997.  Gene #381: 'MARK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MARK1 MUTATED 6 6 3 3 7
MARK1 WILD-TYPE 45 70 58 68 88
'MARK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S3998.  Gene #381: 'MARK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MARK1 MUTATED 7 3 1 1 4 0 0 4 5
MARK1 WILD-TYPE 62 45 38 15 49 20 21 34 45
'MARK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S3999.  Gene #381: 'MARK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MARK1 MUTATED 1 2 1 0 1 0
MARK1 WILD-TYPE 12 14 13 11 10 9
'MARK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.97

Table S4000.  Gene #381: 'MARK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MARK1 MUTATED 1 1 0 1 1 0 0 0 1
MARK1 WILD-TYPE 10 6 7 8 7 7 11 9 4
'CCR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S4001.  Gene #382: 'CCR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCR2 MUTATED 0 2 5
CCR2 WILD-TYPE 42 171 142
'CCR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4002.  Gene #382: 'CCR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCR2 MUTATED 2 2 3
CCR2 WILD-TYPE 60 71 72
'CCR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S4003.  Gene #382: 'CCR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCR2 MUTATED 0 2 4
CCR2 WILD-TYPE 70 118 96
'CCR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S4004.  Gene #382: 'CCR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCR2 MUTATED 1 0 0 1 0 3 0 0 1
CCR2 WILD-TYPE 40 26 30 28 39 66 20 14 21
'CCR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S4005.  Gene #382: 'CCR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCR2 MUTATED 1 2 4 0
CCR2 WILD-TYPE 99 70 68 121

Figure S1221.  Get High-res Image Gene #382: 'CCR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CCR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S4006.  Gene #382: 'CCR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCR2 MUTATED 2 2 3 0 0
CCR2 WILD-TYPE 57 73 71 119 38
'CCR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.2

Table S4007.  Gene #382: 'CCR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCR2 MUTATED 2 4 1 0 0
CCR2 WILD-TYPE 49 72 60 71 95

Figure S1222.  Get High-res Image Gene #382: 'CCR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CCR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S4008.  Gene #382: 'CCR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCR2 MUTATED 2 1 0 1 3 0 0 0 0
CCR2 WILD-TYPE 67 47 39 15 50 20 21 38 50
'NUP160 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0535 (Fisher's exact test), Q value = 0.25

Table S4009.  Gene #383: 'NUP160 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NUP160 MUTATED 3 0 0 0 0
NUP160 WILD-TYPE 29 18 46 27 23
'NUP160 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S4010.  Gene #383: 'NUP160 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NUP160 MUTATED 2 1 0
NUP160 WILD-TYPE 41 66 36
'NUP160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.16

Table S4011.  Gene #383: 'NUP160 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NUP160 MUTATED 1 1 8
NUP160 WILD-TYPE 41 172 139

Figure S1223.  Get High-res Image Gene #383: 'NUP160 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NUP160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S4012.  Gene #383: 'NUP160 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NUP160 MUTATED 3 2 2
NUP160 WILD-TYPE 59 71 73
'NUP160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.94

Table S4013.  Gene #383: 'NUP160 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NUP160 MUTATED 3 4 2
NUP160 WILD-TYPE 67 116 98
'NUP160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S4014.  Gene #383: 'NUP160 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NUP160 MUTATED 1 0 1 1 0 3 0 2 1
NUP160 WILD-TYPE 40 26 29 28 39 66 20 12 21
'NUP160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.75

Table S4015.  Gene #383: 'NUP160 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NUP160 MUTATED 1 4 2 4
NUP160 WILD-TYPE 99 68 70 117
'NUP160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 0.2

Table S4016.  Gene #383: 'NUP160 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NUP160 MUTATED 1 1 5 1 3
NUP160 WILD-TYPE 58 74 69 118 35

Figure S1224.  Get High-res Image Gene #383: 'NUP160 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NUP160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S4017.  Gene #383: 'NUP160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NUP160 MUTATED 1 5 1 1 3
NUP160 WILD-TYPE 50 71 60 70 92
'NUP160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0618 (Fisher's exact test), Q value = 0.27

Table S4018.  Gene #383: 'NUP160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NUP160 MUTATED 2 1 0 3 1 0 0 3 1
NUP160 WILD-TYPE 67 47 39 13 52 20 21 35 49
'CYLC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S4019.  Gene #384: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CYLC1 MUTATED 2 9 16
CYLC1 WILD-TYPE 40 164 131
'CYLC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0852 (Fisher's exact test), Q value = 0.32

Table S4020.  Gene #384: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CYLC1 MUTATED 6 5 14
CYLC1 WILD-TYPE 56 68 61
'CYLC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S4021.  Gene #384: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CYLC1 MUTATED 3 12 10
CYLC1 WILD-TYPE 67 108 90
'CYLC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.56

Table S4022.  Gene #384: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CYLC1 MUTATED 3 3 1 6 1 8 2 0 1
CYLC1 WILD-TYPE 38 23 29 23 38 61 18 14 21
'CYLC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00357 (Fisher's exact test), Q value = 0.053

Table S4023.  Gene #384: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CYLC1 MUTATED 7 8 10 2
CYLC1 WILD-TYPE 93 64 62 119

Figure S1225.  Get High-res Image Gene #384: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CYLC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.017

Table S4024.  Gene #384: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CYLC1 MUTATED 7 8 10 1 1
CYLC1 WILD-TYPE 52 67 64 118 37

Figure S1226.  Get High-res Image Gene #384: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CYLC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.27

Table S4025.  Gene #384: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CYLC1 MUTATED 7 10 3 3 4
CYLC1 WILD-TYPE 44 66 58 68 91
'CYLC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00873 (Fisher's exact test), Q value = 0.088

Table S4026.  Gene #384: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CYLC1 MUTATED 7 4 3 6 2 2 1 1 1
CYLC1 WILD-TYPE 62 44 36 10 51 18 20 37 49

Figure S1227.  Get High-res Image Gene #384: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CYLC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S4027.  Gene #384: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CYLC1 MUTATED 2 2 2 0 4 2
CYLC1 WILD-TYPE 11 14 12 11 7 7
'CYLC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.55

Table S4028.  Gene #384: 'CYLC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CYLC1 MUTATED 1 2 1 3 3 0 0 1 1
CYLC1 WILD-TYPE 10 5 6 6 5 7 11 8 4
'PRAMEF12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S4029.  Gene #385: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRAMEF12 MUTATED 0 2 3
PRAMEF12 WILD-TYPE 42 171 144
'PRAMEF12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S4030.  Gene #385: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRAMEF12 MUTATED 1 2 1
PRAMEF12 WILD-TYPE 61 71 74
'PRAMEF12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S4031.  Gene #385: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRAMEF12 MUTATED 0 4 1
PRAMEF12 WILD-TYPE 70 116 99
'PRAMEF12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.94

Table S4032.  Gene #385: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRAMEF12 MUTATED 0 0 1 0 1 2 0 1 0
PRAMEF12 WILD-TYPE 41 26 29 29 38 67 20 13 22
'PRAMEF12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S4033.  Gene #385: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRAMEF12 MUTATED 2 2 0 1
PRAMEF12 WILD-TYPE 98 70 72 120
'PRAMEF12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S4034.  Gene #385: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRAMEF12 MUTATED 1 1 2 0 1
PRAMEF12 WILD-TYPE 58 74 72 119 37
'PRAMEF12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S4035.  Gene #385: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRAMEF12 MUTATED 0 2 1 1 1
PRAMEF12 WILD-TYPE 51 74 60 70 94
'PRAMEF12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0532 (Fisher's exact test), Q value = 0.25

Table S4036.  Gene #385: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRAMEF12 MUTATED 0 1 0 2 1 0 0 1 0
PRAMEF12 WILD-TYPE 69 47 39 14 52 20 21 37 50
'PRAMEF12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S4037.  Gene #385: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PRAMEF12 MUTATED 2 0 0 0 1 0
PRAMEF12 WILD-TYPE 11 16 14 11 10 9
'PRAMEF12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S4038.  Gene #385: 'PRAMEF12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PRAMEF12 MUTATED 0 0 1 2 0 0 0 0 0
PRAMEF12 WILD-TYPE 11 7 6 7 8 7 11 9 5
'C1ORF59 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4039.  Gene #386: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C1ORF59 MUTATED 1 5 4
C1ORF59 WILD-TYPE 41 168 143
'C1ORF59 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S4040.  Gene #386: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C1ORF59 MUTATED 5 2 2
C1ORF59 WILD-TYPE 57 71 73
'C1ORF59 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S4041.  Gene #386: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C1ORF59 MUTATED 1 2 5
C1ORF59 WILD-TYPE 69 118 95
'C1ORF59 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.92

Table S4042.  Gene #386: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C1ORF59 MUTATED 1 0 0 0 1 5 0 0 1
C1ORF59 WILD-TYPE 40 26 30 29 38 64 20 14 21
'C1ORF59 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.98

Table S4043.  Gene #386: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C1ORF59 MUTATED 3 2 3 2
C1ORF59 WILD-TYPE 97 70 69 119
'C1ORF59 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S4044.  Gene #386: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C1ORF59 MUTATED 4 2 2 1 1
C1ORF59 WILD-TYPE 55 73 72 118 37
'C1ORF59 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S4045.  Gene #386: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C1ORF59 MUTATED 4 1 2 1 1
C1ORF59 WILD-TYPE 47 75 59 70 94
'C1ORF59 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S4046.  Gene #386: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C1ORF59 MUTATED 1 2 2 0 2 1 0 0 1
C1ORF59 WILD-TYPE 68 46 37 16 51 19 21 38 49
'C1ORF59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S4047.  Gene #386: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C1ORF59 MUTATED 0 2 1 0 1 0
C1ORF59 WILD-TYPE 13 14 13 11 10 9
'C1ORF59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S4048.  Gene #386: 'C1ORF59 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C1ORF59 MUTATED 1 0 1 0 0 1 0 0 1
C1ORF59 WILD-TYPE 10 7 6 9 8 6 11 9 4
'MEPE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.19

Table S4049.  Gene #387: 'MEPE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MEPE MUTATED 0 4 11
MEPE WILD-TYPE 42 169 136

Figure S1228.  Get High-res Image Gene #387: 'MEPE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MEPE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S4050.  Gene #387: 'MEPE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MEPE MUTATED 7 3 2
MEPE WILD-TYPE 55 70 73
'MEPE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S4051.  Gene #387: 'MEPE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MEPE MUTATED 2 4 9
MEPE WILD-TYPE 68 116 91
'MEPE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S4052.  Gene #387: 'MEPE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MEPE MUTATED 2 2 0 1 1 6 0 1 2
MEPE WILD-TYPE 39 24 30 28 38 63 20 13 20
'MEPE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S4053.  Gene #387: 'MEPE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MEPE MUTATED 2 3 8 2
MEPE WILD-TYPE 98 69 64 119

Figure S1229.  Get High-res Image Gene #387: 'MEPE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MEPE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00063 (Fisher's exact test), Q value = 0.018

Table S4054.  Gene #387: 'MEPE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MEPE MUTATED 4 1 8 0 2
MEPE WILD-TYPE 55 74 66 119 36

Figure S1230.  Get High-res Image Gene #387: 'MEPE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MEPE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S4055.  Gene #387: 'MEPE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MEPE MUTATED 1 5 6 0 2
MEPE WILD-TYPE 50 71 55 71 93

Figure S1231.  Get High-res Image Gene #387: 'MEPE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MEPE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0436 (Fisher's exact test), Q value = 0.22

Table S4056.  Gene #387: 'MEPE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MEPE MUTATED 4 6 1 1 0 0 1 1 0
MEPE WILD-TYPE 65 42 38 15 53 20 20 37 50

Figure S1232.  Get High-res Image Gene #387: 'MEPE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MEPE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S4057.  Gene #387: 'MEPE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MEPE MUTATED 0 0 2 1 2 0
MEPE WILD-TYPE 13 16 12 10 9 9
'MEPE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4058.  Gene #387: 'MEPE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MEPE MUTATED 1 0 0 1 1 0 1 1 0
MEPE WILD-TYPE 10 7 7 8 7 7 10 8 5
'ZNF384 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S4059.  Gene #388: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF384 MUTATED 1 2 5
ZNF384 WILD-TYPE 41 171 142
'ZNF384 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.77

Table S4060.  Gene #388: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF384 MUTATED 3 1 4
ZNF384 WILD-TYPE 59 72 71
'ZNF384 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0504 (Fisher's exact test), Q value = 0.24

Table S4061.  Gene #388: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF384 MUTATED 0 2 6
ZNF384 WILD-TYPE 70 118 94
'ZNF384 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S4062.  Gene #388: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF384 MUTATED 0 1 0 1 0 5 1 0 0
ZNF384 WILD-TYPE 41 25 30 28 39 64 19 14 22
'ZNF384 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 0.3

Table S4063.  Gene #388: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF384 MUTATED 2 5 1 1
ZNF384 WILD-TYPE 98 67 71 120
'ZNF384 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0324 (Fisher's exact test), Q value = 0.19

Table S4064.  Gene #388: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF384 MUTATED 1 2 5 0 1
ZNF384 WILD-TYPE 58 73 69 119 37

Figure S1233.  Get High-res Image Gene #388: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF384 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S4065.  Gene #388: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF384 MUTATED 1 4 2 0 2
ZNF384 WILD-TYPE 50 72 59 71 93
'ZNF384 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 0.1

Table S4066.  Gene #388: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF384 MUTATED 0 3 0 3 1 0 0 1 1
ZNF384 WILD-TYPE 69 45 39 13 52 20 21 37 49

Figure S1234.  Get High-res Image Gene #388: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF384 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S4067.  Gene #388: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF384 MUTATED 0 1 1 0 1 0
ZNF384 WILD-TYPE 13 15 13 11 10 9
'ZNF384 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S4068.  Gene #388: 'ZNF384 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF384 MUTATED 1 0 0 1 0 1 0 0 0
ZNF384 WILD-TYPE 10 7 7 8 8 6 11 9 5
'MOBKL2B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4069.  Gene #389: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MOBKL2B MUTATED 0 3 3
MOBKL2B WILD-TYPE 42 170 144
'MOBKL2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.98

Table S4070.  Gene #389: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MOBKL2B MUTATED 2 1 3
MOBKL2B WILD-TYPE 60 72 72
'MOBKL2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.96

Table S4071.  Gene #389: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MOBKL2B MUTATED 2 3 1
MOBKL2B WILD-TYPE 68 117 99
'MOBKL2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.45

Table S4072.  Gene #389: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MOBKL2B MUTATED 0 1 0 2 0 1 1 1 0
MOBKL2B WILD-TYPE 41 25 30 27 39 68 19 13 22
'MOBKL2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S4073.  Gene #389: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MOBKL2B MUTATED 4 2 1 0
MOBKL2B WILD-TYPE 96 70 71 121
'MOBKL2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.01 (Fisher's exact test), Q value = 0.094

Table S4074.  Gene #389: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MOBKL2B MUTATED 0 5 2 0 0
MOBKL2B WILD-TYPE 59 70 72 119 38

Figure S1235.  Get High-res Image Gene #389: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MOBKL2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0623 (Fisher's exact test), Q value = 0.27

Table S4075.  Gene #389: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MOBKL2B MUTATED 2 4 0 0 1
MOBKL2B WILD-TYPE 49 72 61 71 94
'MOBKL2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S4076.  Gene #389: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MOBKL2B MUTATED 4 0 1 0 2 0 0 0 0
MOBKL2B WILD-TYPE 65 48 38 16 51 20 21 38 50
'MOBKL2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S4077.  Gene #389: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MOBKL2B MUTATED 0 0 1 0 2 0
MOBKL2B WILD-TYPE 13 16 13 11 9 9
'MOBKL2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S4078.  Gene #389: 'MOBKL2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MOBKL2B MUTATED 0 0 0 1 1 1 0 0 0
MOBKL2B WILD-TYPE 11 7 7 8 7 6 11 9 5
'GPR112 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.13

Table S4079.  Gene #390: 'GPR112 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GPR112 MUTATED 7 0 2 2 0
GPR112 WILD-TYPE 25 18 44 25 23

Figure S1236.  Get High-res Image Gene #390: 'GPR112 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GPR112 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00716 (Fisher's exact test), Q value = 0.079

Table S4080.  Gene #390: 'GPR112 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GPR112 MUTATED 8 2 1
GPR112 WILD-TYPE 35 65 35

Figure S1237.  Get High-res Image Gene #390: 'GPR112 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPR112 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0783 (Fisher's exact test), Q value = 0.3

Table S4081.  Gene #390: 'GPR112 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GPR112 MUTATED 3 9 18
GPR112 WILD-TYPE 39 164 129
'GPR112 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S4082.  Gene #390: 'GPR112 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GPR112 MUTATED 7 7 6
GPR112 WILD-TYPE 55 66 69
'GPR112 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0804 (Fisher's exact test), Q value = 0.31

Table S4083.  Gene #390: 'GPR112 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GPR112 MUTATED 2 13 12
GPR112 WILD-TYPE 68 107 88
'GPR112 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S4084.  Gene #390: 'GPR112 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GPR112 MUTATED 3 2 3 2 5 8 1 2 1
GPR112 WILD-TYPE 38 24 27 27 34 61 19 12 21
'GPR112 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S4085.  Gene #390: 'GPR112 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GPR112 MUTATED 8 4 7 11
GPR112 WILD-TYPE 92 68 65 110
'GPR112 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0192 (Fisher's exact test), Q value = 0.14

Table S4086.  Gene #390: 'GPR112 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GPR112 MUTATED 6 6 6 4 8
GPR112 WILD-TYPE 53 69 68 115 30

Figure S1238.  Get High-res Image Gene #390: 'GPR112 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GPR112 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S4087.  Gene #390: 'GPR112 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GPR112 MUTATED 5 6 4 5 9
GPR112 WILD-TYPE 46 70 57 66 86
'GPR112 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S4088.  Gene #390: 'GPR112 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GPR112 MUTATED 4 7 3 1 5 1 0 6 2
GPR112 WILD-TYPE 65 41 36 15 48 19 21 32 48
'GPR112 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.18

Table S4089.  Gene #390: 'GPR112 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GPR112 MUTATED 2 0 0 2 4 1
GPR112 WILD-TYPE 11 16 14 9 7 8

Figure S1239.  Get High-res Image Gene #390: 'GPR112 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GPR112 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 0.34

Table S4090.  Gene #390: 'GPR112 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GPR112 MUTATED 0 0 2 2 0 2 3 0 0
GPR112 WILD-TYPE 11 7 5 7 8 5 8 9 5
'MET MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S4091.  Gene #391: 'MET MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MET MUTATED 2 0 0 2 0
MET WILD-TYPE 30 18 46 25 23
'MET MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S4092.  Gene #391: 'MET MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MET MUTATED 2 1 1
MET WILD-TYPE 41 66 35
'MET MUTATION STATUS' versus 'CN_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S4093.  Gene #391: 'MET MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MET MUTATED 6 15 20
MET WILD-TYPE 36 158 127
'MET MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S4094.  Gene #391: 'MET MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MET MUTATED 9 13 15
MET WILD-TYPE 53 60 60
'MET MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S4095.  Gene #391: 'MET MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MET MUTATED 7 15 12
MET WILD-TYPE 63 105 88
'MET MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S4096.  Gene #391: 'MET MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MET MUTATED 5 1 2 6 2 8 6 2 2
MET WILD-TYPE 36 25 28 23 37 61 14 12 20
'MET MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00151 (Fisher's exact test), Q value = 0.032

Table S4097.  Gene #391: 'MET MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MET MUTATED 18 13 6 5
MET WILD-TYPE 82 59 66 116

Figure S1240.  Get High-res Image Gene #391: 'MET MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MET MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0072

Table S4098.  Gene #391: 'MET MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MET MUTATED 8 14 15 3 2
MET WILD-TYPE 51 61 59 116 36

Figure S1241.  Get High-res Image Gene #391: 'MET MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MET MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S4099.  Gene #391: 'MET MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MET MUTATED 10 18 7 3 3
MET WILD-TYPE 41 58 54 68 92

Figure S1242.  Get High-res Image Gene #391: 'MET MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MET MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00502 (Fisher's exact test), Q value = 0.066

Table S4100.  Gene #391: 'MET MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MET MUTATED 11 7 4 5 8 4 0 1 1
MET WILD-TYPE 58 41 35 11 45 16 21 37 49

Figure S1243.  Get High-res Image Gene #391: 'MET MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MET MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S4101.  Gene #391: 'MET MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MET MUTATED 4 3 3 3 3 1
MET WILD-TYPE 9 13 11 8 8 8
'MET MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.95

Table S4102.  Gene #391: 'MET MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MET MUTATED 1 1 3 3 1 2 3 3 0
MET WILD-TYPE 10 6 4 6 7 5 8 6 5
'FUT10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S4103.  Gene #392: 'FUT10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FUT10 MUTATED 0 2 4
FUT10 WILD-TYPE 42 171 143
'FUT10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S4104.  Gene #392: 'FUT10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FUT10 MUTATED 2 1 2
FUT10 WILD-TYPE 60 72 73
'FUT10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S4105.  Gene #392: 'FUT10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FUT10 MUTATED 1 1 2
FUT10 WILD-TYPE 69 119 98
'FUT10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.72

Table S4106.  Gene #392: 'FUT10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FUT10 MUTATED 1 0 0 0 0 1 1 1 0
FUT10 WILD-TYPE 40 26 30 29 39 68 19 13 22
'FUT10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.55

Table S4107.  Gene #392: 'FUT10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FUT10 MUTATED 2 3 0 1
FUT10 WILD-TYPE 98 69 72 120
'FUT10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S4108.  Gene #392: 'FUT10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FUT10 MUTATED 1 1 3 1 0
FUT10 WILD-TYPE 58 74 71 118 38
'FUT10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S4109.  Gene #392: 'FUT10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FUT10 MUTATED 0 3 2 1 0
FUT10 WILD-TYPE 51 73 59 70 95
'FUT10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S4110.  Gene #392: 'FUT10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FUT10 MUTATED 2 2 0 1 1 0 0 0 0
FUT10 WILD-TYPE 67 46 39 15 52 20 21 38 50
'BAG4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00656 (Fisher's exact test), Q value = 0.076

Table S4111.  Gene #393: 'BAG4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BAG4 MUTATED 1 0 7
BAG4 WILD-TYPE 41 173 140

Figure S1244.  Get High-res Image Gene #393: 'BAG4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BAG4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S4112.  Gene #393: 'BAG4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BAG4 MUTATED 1 1 4
BAG4 WILD-TYPE 61 72 71
'BAG4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4113.  Gene #393: 'BAG4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BAG4 MUTATED 1 2 2
BAG4 WILD-TYPE 69 118 98
'BAG4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S4114.  Gene #393: 'BAG4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BAG4 MUTATED 1 0 0 1 0 1 0 1 1
BAG4 WILD-TYPE 40 26 30 28 39 68 20 13 21
'BAG4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S4115.  Gene #393: 'BAG4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BAG4 MUTATED 1 4 1 2
BAG4 WILD-TYPE 99 68 71 119
'BAG4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.19

Table S4116.  Gene #393: 'BAG4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BAG4 MUTATED 1 1 4 0 2
BAG4 WILD-TYPE 58 74 70 119 36

Figure S1245.  Get High-res Image Gene #393: 'BAG4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BAG4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S4117.  Gene #393: 'BAG4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BAG4 MUTATED 1 3 1 0 3
BAG4 WILD-TYPE 50 73 60 71 92
'BAG4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S4118.  Gene #393: 'BAG4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BAG4 MUTATED 2 1 0 1 1 0 0 3 0
BAG4 WILD-TYPE 67 47 39 15 52 20 21 35 50
'GPR87 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S4119.  Gene #394: 'GPR87 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GPR87 MUTATED 2 0 0 0 1
GPR87 WILD-TYPE 30 18 46 27 22
'GPR87 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 0.21

Table S4120.  Gene #394: 'GPR87 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GPR87 MUTATED 3 0 0
GPR87 WILD-TYPE 40 67 36

Figure S1246.  Get High-res Image Gene #394: 'GPR87 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPR87 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0554 (Fisher's exact test), Q value = 0.25

Table S4121.  Gene #394: 'GPR87 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GPR87 MUTATED 0 2 8
GPR87 WILD-TYPE 42 171 139
'GPR87 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S4122.  Gene #394: 'GPR87 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GPR87 MUTATED 3 1 2
GPR87 WILD-TYPE 59 72 73
'GPR87 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S4123.  Gene #394: 'GPR87 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GPR87 MUTATED 0 2 5
GPR87 WILD-TYPE 70 118 95
'GPR87 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.95

Table S4124.  Gene #394: 'GPR87 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GPR87 MUTATED 1 1 0 0 0 4 0 0 1
GPR87 WILD-TYPE 40 25 30 29 39 65 20 14 21
'GPR87 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S4125.  Gene #394: 'GPR87 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GPR87 MUTATED 1 3 3 3
GPR87 WILD-TYPE 99 69 69 118
'GPR87 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S4126.  Gene #394: 'GPR87 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GPR87 MUTATED 2 1 4 1 2
GPR87 WILD-TYPE 57 74 70 118 36
'GPR87 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S4127.  Gene #394: 'GPR87 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GPR87 MUTATED 1 3 1 2 3
GPR87 WILD-TYPE 50 73 60 69 92
'GPR87 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S4128.  Gene #394: 'GPR87 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GPR87 MUTATED 2 3 0 1 1 0 1 2 0
GPR87 WILD-TYPE 67 45 39 15 52 20 20 36 50
'RASA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.19

Table S4129.  Gene #395: 'RASA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RASA2 MUTATED 0 4 11
RASA2 WILD-TYPE 42 169 136

Figure S1247.  Get High-res Image Gene #395: 'RASA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RASA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S4130.  Gene #395: 'RASA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RASA2 MUTATED 6 4 4
RASA2 WILD-TYPE 56 69 71
'RASA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4131.  Gene #395: 'RASA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RASA2 MUTATED 3 6 5
RASA2 WILD-TYPE 67 114 95
'RASA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S4132.  Gene #395: 'RASA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RASA2 MUTATED 3 2 1 0 3 4 0 1 0
RASA2 WILD-TYPE 38 24 29 29 36 65 20 13 22
'RASA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.19

Table S4133.  Gene #395: 'RASA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RASA2 MUTATED 2 7 4 2
RASA2 WILD-TYPE 98 65 68 119

Figure S1248.  Get High-res Image Gene #395: 'RASA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RASA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0294 (Fisher's exact test), Q value = 0.18

Table S4134.  Gene #395: 'RASA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RASA2 MUTATED 2 3 8 2 0
RASA2 WILD-TYPE 57 72 66 117 38

Figure S1249.  Get High-res Image Gene #395: 'RASA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RASA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.25

Table S4135.  Gene #395: 'RASA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RASA2 MUTATED 0 7 4 1 3
RASA2 WILD-TYPE 51 69 57 70 92
'RASA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S4136.  Gene #395: 'RASA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RASA2 MUTATED 6 4 0 1 1 1 0 0 2
RASA2 WILD-TYPE 63 44 39 15 52 19 21 38 48
'RASA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S4137.  Gene #395: 'RASA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RASA2 MUTATED 0 1 2 0 1 0
RASA2 WILD-TYPE 13 15 12 11 10 9
'RASA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.73

Table S4138.  Gene #395: 'RASA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RASA2 MUTATED 0 0 0 1 2 0 1 0 0
RASA2 WILD-TYPE 11 7 7 8 6 7 10 9 5
'TNNI3K MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S4139.  Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TNNI3K MUTATED 6 0 1 2 0
TNNI3K WILD-TYPE 26 18 45 25 23

Figure S1250.  Get High-res Image Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TNNI3K MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00686 (Fisher's exact test), Q value = 0.077

Table S4140.  Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TNNI3K MUTATED 7 1 1
TNNI3K WILD-TYPE 36 66 35

Figure S1251.  Get High-res Image Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TNNI3K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0465 (Fisher's exact test), Q value = 0.23

Table S4141.  Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TNNI3K MUTATED 3 6 15
TNNI3K WILD-TYPE 39 167 132

Figure S1252.  Get High-res Image Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TNNI3K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.91

Table S4142.  Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TNNI3K MUTATED 6 5 4
TNNI3K WILD-TYPE 56 68 71
'TNNI3K MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S4143.  Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TNNI3K MUTATED 2 9 11
TNNI3K WILD-TYPE 68 111 89
'TNNI3K MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00333 (Fisher's exact test), Q value = 0.051

Table S4144.  Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TNNI3K MUTATED 0 1 0 3 4 13 0 1 0
TNNI3K WILD-TYPE 41 25 30 26 35 56 20 13 22

Figure S1253.  Get High-res Image Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'TNNI3K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S4145.  Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TNNI3K MUTATED 7 4 3 9
TNNI3K WILD-TYPE 93 68 69 112
'TNNI3K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00793 (Fisher's exact test), Q value = 0.084

Table S4146.  Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TNNI3K MUTATED 1 9 3 4 6
TNNI3K WILD-TYPE 58 66 71 115 32

Figure S1254.  Get High-res Image Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TNNI3K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S4147.  Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TNNI3K MUTATED 3 7 2 2 8
TNNI3K WILD-TYPE 48 69 59 69 87
'TNNI3K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S4148.  Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TNNI3K MUTATED 3 1 4 1 3 2 2 3 3
TNNI3K WILD-TYPE 66 47 35 15 50 18 19 35 47
'TNNI3K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.078 (Fisher's exact test), Q value = 0.3

Table S4149.  Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TNNI3K MUTATED 3 1 0 0 0 0
TNNI3K WILD-TYPE 10 15 14 11 11 9
'TNNI3K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.89

Table S4150.  Gene #396: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TNNI3K MUTATED 1 0 0 2 0 0 0 1 0
TNNI3K WILD-TYPE 10 7 7 7 8 7 11 8 5
'RELN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S4151.  Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RELN MUTATED 11 1 0 6 1
RELN WILD-TYPE 21 17 46 21 22

Figure S1255.  Get High-res Image Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RELN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0198 (Fisher's exact test), Q value = 0.14

Table S4152.  Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RELN MUTATED 11 6 2
RELN WILD-TYPE 32 61 34

Figure S1256.  Get High-res Image Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RELN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0093

Table S4153.  Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RELN MUTATED 7 17 41
RELN WILD-TYPE 35 156 106

Figure S1257.  Get High-res Image Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RELN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S4154.  Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RELN MUTATED 19 13 14
RELN WILD-TYPE 43 60 61
'RELN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.098 (Fisher's exact test), Q value = 0.34

Table S4155.  Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RELN MUTATED 9 22 26
RELN WILD-TYPE 61 98 74
'RELN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00888 (Fisher's exact test), Q value = 0.088

Table S4156.  Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RELN MUTATED 4 2 1 9 8 22 3 3 5
RELN WILD-TYPE 37 24 29 20 31 47 17 11 17

Figure S1258.  Get High-res Image Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'RELN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S4157.  Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RELN MUTATED 14 19 14 17
RELN WILD-TYPE 86 53 58 104
'RELN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S4158.  Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RELN MUTATED 8 13 24 8 11
RELN WILD-TYPE 51 62 50 111 27

Figure S1259.  Get High-res Image Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RELN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S4159.  Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RELN MUTATED 8 22 11 5 18
RELN WILD-TYPE 43 54 50 66 77

Figure S1260.  Get High-res Image Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RELN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.11

Table S4160.  Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RELN MUTATED 17 9 3 7 9 3 3 10 3
RELN WILD-TYPE 52 39 36 9 44 17 18 28 47

Figure S1261.  Get High-res Image Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RELN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 0.33

Table S4161.  Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RELN MUTATED 1 1 4 0 4 2
RELN WILD-TYPE 12 15 10 11 7 7
'RELN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 0.93

Table S4162.  Gene #397: 'RELN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RELN MUTATED 2 0 0 3 2 1 3 1 0
RELN WILD-TYPE 9 7 7 6 6 6 8 8 5
'USP25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S4163.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
USP25 MUTATED 1 9 9
USP25 WILD-TYPE 41 164 138
'USP25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S4164.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
USP25 MUTATED 6 5 6
USP25 WILD-TYPE 56 68 69
'USP25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S4165.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
USP25 MUTATED 2 7 7
USP25 WILD-TYPE 68 113 93
'USP25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S4166.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
USP25 MUTATED 4 3 1 1 1 4 0 1 1
USP25 WILD-TYPE 37 23 29 28 38 65 20 13 21
'USP25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0807 (Fisher's exact test), Q value = 0.31

Table S4167.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
USP25 MUTATED 5 6 6 2
USP25 WILD-TYPE 95 66 66 119
'USP25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00165 (Fisher's exact test), Q value = 0.034

Table S4168.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
USP25 MUTATED 7 5 5 0 2
USP25 WILD-TYPE 52 70 69 119 36

Figure S1262.  Get High-res Image Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S4169.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
USP25 MUTATED 5 6 5 0 2
USP25 WILD-TYPE 46 70 56 71 93

Figure S1263.  Get High-res Image Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'USP25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S4170.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
USP25 MUTATED 5 5 1 2 2 1 0 1 1
USP25 WILD-TYPE 64 43 38 14 51 19 21 37 49
'USP25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S4171.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
USP25 MUTATED 1 2 0 0 1 1
USP25 WILD-TYPE 12 14 14 11 10 8
'USP25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S4172.  Gene #398: 'USP25 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
USP25 MUTATED 1 1 2 1 0 0 0 0 0
USP25 WILD-TYPE 10 6 5 8 8 7 11 9 5
'NCOA7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0546 (Fisher's exact test), Q value = 0.25

Table S4173.  Gene #399: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NCOA7 MUTATED 3 0 0 0 0
NCOA7 WILD-TYPE 29 18 46 27 23
'NCOA7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0381 (Fisher's exact test), Q value = 0.21

Table S4174.  Gene #399: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NCOA7 MUTATED 3 0 0
NCOA7 WILD-TYPE 40 67 36

Figure S1264.  Get High-res Image Gene #399: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NCOA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S4175.  Gene #399: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NCOA7 MUTATED 1 4 10
NCOA7 WILD-TYPE 41 169 137
'NCOA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4176.  Gene #399: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NCOA7 MUTATED 4 4 4
NCOA7 WILD-TYPE 58 69 71
'NCOA7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S4177.  Gene #399: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NCOA7 MUTATED 3 3 7
NCOA7 WILD-TYPE 67 117 93
'NCOA7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S4178.  Gene #399: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NCOA7 MUTATED 2 1 0 1 1 6 1 0 1
NCOA7 WILD-TYPE 39 25 30 28 38 63 19 14 21
'NCOA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S4179.  Gene #399: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NCOA7 MUTATED 2 4 6 3
NCOA7 WILD-TYPE 98 68 66 118
'NCOA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00332 (Fisher's exact test), Q value = 0.051

Table S4180.  Gene #399: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NCOA7 MUTATED 2 3 7 0 3
NCOA7 WILD-TYPE 57 72 67 119 35

Figure S1265.  Get High-res Image Gene #399: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NCOA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.25

Table S4181.  Gene #399: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NCOA7 MUTATED 3 7 2 0 3
NCOA7 WILD-TYPE 48 69 59 71 92
'NCOA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0694 (Fisher's exact test), Q value = 0.28

Table S4182.  Gene #399: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NCOA7 MUTATED 4 5 0 2 1 1 0 2 0
NCOA7 WILD-TYPE 65 43 39 14 52 19 21 36 50
'NCOA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S4183.  Gene #399: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NCOA7 MUTATED 0 2 1 0 1 0
NCOA7 WILD-TYPE 13 14 13 11 10 9
'NCOA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S4184.  Gene #399: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NCOA7 MUTATED 0 1 0 1 1 0 1 0 0
NCOA7 WILD-TYPE 11 6 7 8 7 7 10 9 5
'DDX23 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.74

Table S4185.  Gene #400: 'DDX23 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DDX23 MUTATED 3 0 1 1 0
DDX23 WILD-TYPE 29 18 45 26 23
'DDX23 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S4186.  Gene #400: 'DDX23 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DDX23 MUTATED 3 1 1
DDX23 WILD-TYPE 40 66 35
'DDX23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S4187.  Gene #400: 'DDX23 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DDX23 MUTATED 2 5 10
DDX23 WILD-TYPE 40 168 137
'DDX23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.97

Table S4188.  Gene #400: 'DDX23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DDX23 MUTATED 4 3 6
DDX23 WILD-TYPE 58 70 69
'DDX23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S4189.  Gene #400: 'DDX23 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DDX23 MUTATED 2 4 9
DDX23 WILD-TYPE 68 116 91
'DDX23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S4190.  Gene #400: 'DDX23 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DDX23 MUTATED 2 1 0 3 1 5 3 0 0
DDX23 WILD-TYPE 39 25 30 26 38 64 17 14 22
'DDX23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S4191.  Gene #400: 'DDX23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DDX23 MUTATED 4 5 4 5
DDX23 WILD-TYPE 96 67 68 116
'DDX23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.54

Table S4192.  Gene #400: 'DDX23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DDX23 MUTATED 3 5 5 2 3
DDX23 WILD-TYPE 56 70 69 117 35
'DDX23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 0.34

Table S4193.  Gene #400: 'DDX23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DDX23 MUTATED 1 8 2 2 2
DDX23 WILD-TYPE 50 68 59 69 93
'DDX23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S4194.  Gene #400: 'DDX23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DDX23 MUTATED 3 3 1 2 3 1 0 1 1
DDX23 WILD-TYPE 66 45 38 14 50 19 21 37 49
'DDX23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00616 (Fisher's exact test), Q value = 0.074

Table S4195.  Gene #400: 'DDX23 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DDX23 MUTATED 0 0 0 0 3 0
DDX23 WILD-TYPE 13 16 14 11 8 9

Figure S1266.  Get High-res Image Gene #400: 'DDX23 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DDX23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S4196.  Gene #400: 'DDX23 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DDX23 MUTATED 0 0 1 1 0 1 0 0 0
DDX23 WILD-TYPE 11 7 6 8 8 6 11 9 5
'IGF2R MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0015 (Fisher's exact test), Q value = 0.032

Table S4197.  Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IGF2R MUTATED 8 0 1 3 0
IGF2R WILD-TYPE 24 18 45 24 23

Figure S1267.  Get High-res Image Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'IGF2R MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.001 (Fisher's exact test), Q value = 0.025

Table S4198.  Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IGF2R MUTATED 9 1 2
IGF2R WILD-TYPE 34 66 34

Figure S1268.  Get High-res Image Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IGF2R MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S4199.  Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IGF2R MUTATED 1 4 32
IGF2R WILD-TYPE 41 169 115

Figure S1269.  Get High-res Image Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IGF2R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.095

Table S4200.  Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IGF2R MUTATED 7 3 15
IGF2R WILD-TYPE 55 70 60

Figure S1270.  Get High-res Image Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'IGF2R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00183 (Fisher's exact test), Q value = 0.036

Table S4201.  Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IGF2R MUTATED 1 10 17
IGF2R WILD-TYPE 69 110 83

Figure S1271.  Get High-res Image Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'IGF2R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.23

Table S4202.  Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IGF2R MUTATED 1 2 2 2 4 15 1 1 0
IGF2R WILD-TYPE 40 24 28 27 35 54 19 13 22

Figure S1272.  Get High-res Image Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'IGF2R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S4203.  Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IGF2R MUTATED 4 14 7 12
IGF2R WILD-TYPE 96 58 65 109

Figure S1273.  Get High-res Image Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IGF2R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S4204.  Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IGF2R MUTATED 1 6 16 6 8
IGF2R WILD-TYPE 58 69 58 113 30

Figure S1274.  Get High-res Image Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IGF2R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.14

Table S4205.  Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IGF2R MUTATED 2 14 4 3 12
IGF2R WILD-TYPE 49 62 57 68 83

Figure S1275.  Get High-res Image Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IGF2R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S4206.  Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IGF2R MUTATED 3 6 0 7 4 3 1 9 2
IGF2R WILD-TYPE 66 42 39 9 49 17 20 29 48

Figure S1276.  Get High-res Image Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IGF2R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.012

Table S4207.  Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IGF2R MUTATED 1 0 0 0 5 0
IGF2R WILD-TYPE 12 16 14 11 6 9

Figure S1277.  Get High-res Image Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'IGF2R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S4208.  Gene #401: 'IGF2R MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IGF2R MUTATED 0 0 0 3 0 1 2 0 0
IGF2R WILD-TYPE 11 7 7 6 8 6 9 9 5
'TMEM92 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S4209.  Gene #402: 'TMEM92 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMEM92 MUTATED 0 0 3
TMEM92 WILD-TYPE 42 173 144
'TMEM92 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S4210.  Gene #402: 'TMEM92 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMEM92 MUTATED 0 2 0 1
TMEM92 WILD-TYPE 100 70 72 120
'TMEM92 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0716 (Fisher's exact test), Q value = 0.29

Table S4211.  Gene #402: 'TMEM92 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMEM92 MUTATED 0 0 2 0 1
TMEM92 WILD-TYPE 59 75 72 119 37
'TMEM92 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S4212.  Gene #402: 'TMEM92 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMEM92 MUTATED 0 2 0 0 1
TMEM92 WILD-TYPE 51 74 61 71 94
'TMEM92 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00375 (Fisher's exact test), Q value = 0.055

Table S4213.  Gene #402: 'TMEM92 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMEM92 MUTATED 0 0 0 2 0 0 0 1 0
TMEM92 WILD-TYPE 69 48 39 14 53 20 21 37 50

Figure S1278.  Get High-res Image Gene #402: 'TMEM92 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ODZ1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00356 (Fisher's exact test), Q value = 0.053

Table S4214.  Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ODZ1 MUTATED 10 0 3 2 1
ODZ1 WILD-TYPE 22 18 43 25 22

Figure S1279.  Get High-res Image Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ODZ1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S4215.  Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ODZ1 MUTATED 8 5 3
ODZ1 WILD-TYPE 35 62 33
'ODZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S4216.  Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ODZ1 MUTATED 5 15 39
ODZ1 WILD-TYPE 37 158 108

Figure S1280.  Get High-res Image Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ODZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0546 (Fisher's exact test), Q value = 0.25

Table S4217.  Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ODZ1 MUTATED 11 10 22
ODZ1 WILD-TYPE 51 63 53
'ODZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.55

Table S4218.  Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ODZ1 MUTATED 12 16 22
ODZ1 WILD-TYPE 58 104 78
'ODZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S4219.  Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ODZ1 MUTATED 6 3 1 4 8 14 6 3 5
ODZ1 WILD-TYPE 35 23 29 25 31 55 14 11 17
'ODZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 0.18

Table S4220.  Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ODZ1 MUTATED 11 20 13 17
ODZ1 WILD-TYPE 89 52 59 104

Figure S1281.  Get High-res Image Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ODZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00351 (Fisher's exact test), Q value = 0.053

Table S4221.  Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ODZ1 MUTATED 7 15 21 10 8
ODZ1 WILD-TYPE 52 60 53 109 30

Figure S1282.  Get High-res Image Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ODZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.19

Table S4222.  Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ODZ1 MUTATED 10 22 7 8 14
ODZ1 WILD-TYPE 41 54 54 63 81

Figure S1283.  Get High-res Image Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ODZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0229 (Fisher's exact test), Q value = 0.16

Table S4223.  Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ODZ1 MUTATED 12 9 2 8 9 5 2 8 6
ODZ1 WILD-TYPE 57 39 37 8 44 15 19 30 44

Figure S1284.  Get High-res Image Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ODZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S4224.  Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ODZ1 MUTATED 2 3 2 1 3 0
ODZ1 WILD-TYPE 11 13 12 10 8 9
'ODZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S4225.  Gene #403: 'ODZ1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ODZ1 MUTATED 2 2 0 1 1 1 2 1 1
ODZ1 WILD-TYPE 9 5 7 8 7 6 9 8 4
'FLG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00858 (Fisher's exact test), Q value = 0.087

Table S4226.  Gene #404: 'FLG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FLG2 MUTATED 6 0 0 2 2
FLG2 WILD-TYPE 26 18 46 25 21

Figure S1285.  Get High-res Image Gene #404: 'FLG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FLG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0213 (Fisher's exact test), Q value = 0.15

Table S4227.  Gene #404: 'FLG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FLG2 MUTATED 6 1 3
FLG2 WILD-TYPE 37 66 33

Figure S1286.  Get High-res Image Gene #404: 'FLG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FLG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00252 (Fisher's exact test), Q value = 0.043

Table S4228.  Gene #404: 'FLG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FLG2 MUTATED 2 6 20
FLG2 WILD-TYPE 40 167 127

Figure S1287.  Get High-res Image Gene #404: 'FLG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FLG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0685 (Fisher's exact test), Q value = 0.28

Table S4229.  Gene #404: 'FLG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FLG2 MUTATED 8 2 8
FLG2 WILD-TYPE 54 71 67
'FLG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.94

Table S4230.  Gene #404: 'FLG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FLG2 MUTATED 4 10 10
FLG2 WILD-TYPE 66 110 90
'FLG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S4231.  Gene #404: 'FLG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FLG2 MUTATED 2 1 0 5 3 7 2 1 3
FLG2 WILD-TYPE 39 25 30 24 36 62 18 13 19
'FLG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S4232.  Gene #404: 'FLG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FLG2 MUTATED 3 8 7 10
FLG2 WILD-TYPE 97 64 65 111
'FLG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.55

Table S4233.  Gene #404: 'FLG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FLG2 MUTATED 4 4 9 6 5
FLG2 WILD-TYPE 55 71 65 113 33
'FLG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S4234.  Gene #404: 'FLG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FLG2 MUTATED 3 9 3 3 9
FLG2 WILD-TYPE 48 67 58 68 86
'FLG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.45

Table S4235.  Gene #404: 'FLG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FLG2 MUTATED 3 4 2 5 3 1 1 4 4
FLG2 WILD-TYPE 66 44 37 11 50 19 20 34 46
'FLG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00423 (Fisher's exact test), Q value = 0.059

Table S4236.  Gene #404: 'FLG2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FLG2 MUTATED 0 1 0 0 4 0
FLG2 WILD-TYPE 13 15 14 11 7 9

Figure S1288.  Get High-res Image Gene #404: 'FLG2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FLG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S4237.  Gene #404: 'FLG2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FLG2 MUTATED 0 1 0 2 1 0 1 0 0
FLG2 WILD-TYPE 11 6 7 7 7 7 10 9 5
'TRMT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S4238.  Gene #405: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRMT5 MUTATED 2 1 3
TRMT5 WILD-TYPE 40 172 144
'TRMT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S4239.  Gene #405: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRMT5 MUTATED 2 2 1
TRMT5 WILD-TYPE 60 71 74
'TRMT5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.78

Table S4240.  Gene #405: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRMT5 MUTATED 0 3 3
TRMT5 WILD-TYPE 70 117 97
'TRMT5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S4241.  Gene #405: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRMT5 MUTATED 1 0 0 1 1 2 0 1 0
TRMT5 WILD-TYPE 40 26 30 28 38 67 20 13 22
'TRMT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S4242.  Gene #405: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRMT5 MUTATED 2 2 1 1
TRMT5 WILD-TYPE 98 70 71 120
'TRMT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.073 (Fisher's exact test), Q value = 0.29

Table S4243.  Gene #405: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRMT5 MUTATED 0 2 3 0 1
TRMT5 WILD-TYPE 59 73 71 119 37
'TRMT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S4244.  Gene #405: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRMT5 MUTATED 1 4 0 0 0
TRMT5 WILD-TYPE 50 72 61 71 95

Figure S1289.  Get High-res Image Gene #405: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TRMT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.98

Table S4245.  Gene #405: 'TRMT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRMT5 MUTATED 2 2 1 0 0 0 0 0 0
TRMT5 WILD-TYPE 67 46 38 16 53 20 21 38 50
'CHML MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00889 (Fisher's exact test), Q value = 0.088

Table S4246.  Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CHML MUTATED 4 0 0 0 0
CHML WILD-TYPE 28 18 46 27 23

Figure S1290.  Get High-res Image Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CHML MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.01 (Fisher's exact test), Q value = 0.094

Table S4247.  Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CHML MUTATED 4 0 0
CHML WILD-TYPE 39 67 36

Figure S1291.  Get High-res Image Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CHML MUTATION STATUS' versus 'CN_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.54

Table S4248.  Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CHML MUTATED 1 7 12
CHML WILD-TYPE 41 166 135
'CHML MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00459 (Fisher's exact test), Q value = 0.062

Table S4249.  Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CHML MUTATED 10 1 6
CHML WILD-TYPE 52 72 69

Figure S1292.  Get High-res Image Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CHML MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S4250.  Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CHML MUTATED 5 5 6
CHML WILD-TYPE 65 115 94
'CHML MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0745 (Fisher's exact test), Q value = 0.3

Table S4251.  Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CHML MUTATED 2 0 0 0 4 4 2 3 1
CHML WILD-TYPE 39 26 30 29 35 65 18 11 21
'CHML MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0348 (Fisher's exact test), Q value = 0.2

Table S4252.  Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CHML MUTATED 4 4 9 3
CHML WILD-TYPE 96 68 63 118

Figure S1293.  Get High-res Image Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CHML MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00984 (Fisher's exact test), Q value = 0.093

Table S4253.  Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CHML MUTATED 5 3 8 1 3
CHML WILD-TYPE 54 72 66 118 35

Figure S1294.  Get High-res Image Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHML MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S4254.  Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CHML MUTATED 4 4 6 1 5
CHML WILD-TYPE 47 72 55 70 90
'CHML MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S4255.  Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CHML MUTATED 5 4 2 0 4 0 1 4 0
CHML WILD-TYPE 64 44 37 16 49 20 20 34 50
'CHML MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S4256.  Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CHML MUTATED 1 0 4 1 1 0
CHML WILD-TYPE 12 16 10 10 10 9
'CHML MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00463 (Fisher's exact test), Q value = 0.063

Table S4257.  Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CHML MUTATED 0 0 0 0 4 0 2 0 1
CHML WILD-TYPE 11 7 7 9 4 7 9 9 4

Figure S1295.  Get High-res Image Gene #406: 'CHML MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'AURKA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.53

Table S4258.  Gene #407: 'AURKA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AURKA MUTATED 2 2 3
AURKA WILD-TYPE 40 171 144
'AURKA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S4259.  Gene #407: 'AURKA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AURKA MUTATED 2 2 1
AURKA WILD-TYPE 60 71 74
'AURKA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S4260.  Gene #407: 'AURKA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AURKA MUTATED 1 2 4
AURKA WILD-TYPE 69 118 96
'AURKA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S4261.  Gene #407: 'AURKA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AURKA MUTATED 2 0 1 0 1 3 0 0 0
AURKA WILD-TYPE 39 26 29 29 38 66 20 14 22
'AURKA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S4262.  Gene #407: 'AURKA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AURKA MUTATED 2 0 3 2
AURKA WILD-TYPE 98 72 69 119
'AURKA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0696 (Fisher's exact test), Q value = 0.28

Table S4263.  Gene #407: 'AURKA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AURKA MUTATED 1 3 1 0 2
AURKA WILD-TYPE 58 72 73 119 36
'AURKA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.97

Table S4264.  Gene #407: 'AURKA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AURKA MUTATED 0 1 1 3 2
AURKA WILD-TYPE 51 75 60 68 93
'AURKA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S4265.  Gene #407: 'AURKA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AURKA MUTATED 4 1 0 0 0 0 0 2 0
AURKA WILD-TYPE 65 47 39 16 53 20 21 36 50
'AURKA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S4266.  Gene #407: 'AURKA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AURKA MUTATED 0 0 3 0 0 0
AURKA WILD-TYPE 13 16 11 11 11 9

Figure S1296.  Get High-res Image Gene #407: 'AURKA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'AURKA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.63

Table S4267.  Gene #407: 'AURKA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AURKA MUTATED 2 0 0 0 0 1 0 0 0
AURKA WILD-TYPE 9 7 7 9 8 6 11 9 5
'LRRC23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S4268.  Gene #408: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LRRC23 MUTATED 2 3 4
LRRC23 WILD-TYPE 40 170 143
'LRRC23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.94

Table S4269.  Gene #408: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LRRC23 MUTATED 4 2 3
LRRC23 WILD-TYPE 58 71 72
'LRRC23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S4270.  Gene #408: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LRRC23 MUTATED 0 4 4
LRRC23 WILD-TYPE 70 116 96
'LRRC23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S4271.  Gene #408: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LRRC23 MUTATED 2 2 0 1 0 2 0 0 1
LRRC23 WILD-TYPE 39 24 30 28 39 67 20 14 21
'LRRC23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0447 (Fisher's exact test), Q value = 0.22

Table S4272.  Gene #408: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LRRC23 MUTATED 3 2 4 0
LRRC23 WILD-TYPE 97 70 68 121

Figure S1297.  Get High-res Image Gene #408: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LRRC23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.16

Table S4273.  Gene #408: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LRRC23 MUTATED 4 2 3 0 0
LRRC23 WILD-TYPE 55 73 71 119 38

Figure S1298.  Get High-res Image Gene #408: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LRRC23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S4274.  Gene #408: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LRRC23 MUTATED 2 3 3 1 0
LRRC23 WILD-TYPE 49 73 58 70 95
'LRRC23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.53

Table S4275.  Gene #408: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LRRC23 MUTATED 4 3 0 1 1 0 0 0 0
LRRC23 WILD-TYPE 65 45 39 15 52 20 21 38 50
'LRRC23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.93

Table S4276.  Gene #408: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LRRC23 MUTATED 0 1 2 0 1 0
LRRC23 WILD-TYPE 13 15 12 11 10 9
'LRRC23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S4277.  Gene #408: 'LRRC23 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LRRC23 MUTATED 2 0 0 1 0 0 1 0 0
LRRC23 WILD-TYPE 9 7 7 8 8 7 10 9 5
'PHF3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.17

Table S4278.  Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PHF3 MUTATED 4 0 0 2 0
PHF3 WILD-TYPE 28 18 46 25 23

Figure S1299.  Get High-res Image Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PHF3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S4279.  Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PHF3 MUTATED 5 1 0
PHF3 WILD-TYPE 38 66 36

Figure S1300.  Get High-res Image Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PHF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0451 (Fisher's exact test), Q value = 0.23

Table S4280.  Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PHF3 MUTATED 2 6 15
PHF3 WILD-TYPE 40 167 132

Figure S1301.  Get High-res Image Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PHF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 0.24

Table S4281.  Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PHF3 MUTATED 9 3 3
PHF3 WILD-TYPE 53 70 72

Figure S1302.  Get High-res Image Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PHF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.19

Table S4282.  Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PHF3 MUTATED 3 5 13
PHF3 WILD-TYPE 67 115 87

Figure S1303.  Get High-res Image Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PHF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S4283.  Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PHF3 MUTATED 4 2 2 0 3 9 1 0 0
PHF3 WILD-TYPE 37 24 28 29 36 60 19 14 22
'PHF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 0.33

Table S4284.  Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PHF3 MUTATED 5 1 8 8
PHF3 WILD-TYPE 95 71 64 113
'PHF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S4285.  Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PHF3 MUTATED 4 5 5 3 5
PHF3 WILD-TYPE 55 70 69 116 33
'PHF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S4286.  Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PHF3 MUTATED 3 8 2 2 6
PHF3 WILD-TYPE 48 68 59 69 89
'PHF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S4287.  Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PHF3 MUTATED 2 5 2 0 5 2 0 4 1
PHF3 WILD-TYPE 67 43 37 16 48 18 21 34 49
'PHF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S4288.  Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PHF3 MUTATED 1 1 0 1 2 0
PHF3 WILD-TYPE 12 15 14 10 9 9
'PHF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S4289.  Gene #409: 'PHF3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PHF3 MUTATED 0 0 0 1 0 2 2 0 0
PHF3 WILD-TYPE 11 7 7 8 8 5 9 9 5
'CNTNAP5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0762 (Fisher's exact test), Q value = 0.3

Table S4290.  Gene #410: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CNTNAP5 MUTATED 3 0 0 2 0
CNTNAP5 WILD-TYPE 29 18 46 25 23
'CNTNAP5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S4291.  Gene #410: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CNTNAP5 MUTATED 3 1 1
CNTNAP5 WILD-TYPE 40 66 35
'CNTNAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S4292.  Gene #410: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CNTNAP5 MUTATED 3 13 24
CNTNAP5 WILD-TYPE 39 160 123

Figure S1304.  Get High-res Image Gene #410: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CNTNAP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.94

Table S4293.  Gene #410: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CNTNAP5 MUTATED 12 11 10
CNTNAP5 WILD-TYPE 50 62 65
'CNTNAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S4294.  Gene #410: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CNTNAP5 MUTATED 6 15 12
CNTNAP5 WILD-TYPE 64 105 88
'CNTNAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S4295.  Gene #410: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CNTNAP5 MUTATED 5 3 3 5 2 8 2 4 1
CNTNAP5 WILD-TYPE 36 23 27 24 37 61 18 10 21
'CNTNAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 0.31

Table S4296.  Gene #410: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CNTNAP5 MUTATED 9 12 11 8
CNTNAP5 WILD-TYPE 91 60 61 113
'CNTNAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00256 (Fisher's exact test), Q value = 0.043

Table S4297.  Gene #410: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CNTNAP5 MUTATED 4 11 16 5 4
CNTNAP5 WILD-TYPE 55 64 58 114 34

Figure S1305.  Get High-res Image Gene #410: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CNTNAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0832 (Fisher's exact test), Q value = 0.31

Table S4298.  Gene #410: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CNTNAP5 MUTATED 5 14 9 5 6
CNTNAP5 WILD-TYPE 46 62 52 66 89
'CNTNAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S4299.  Gene #410: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CNTNAP5 MUTATED 8 8 4 5 5 2 1 4 2
CNTNAP5 WILD-TYPE 61 40 35 11 48 18 20 34 48
'CNTNAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.099 (Fisher's exact test), Q value = 0.34

Table S4300.  Gene #410: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CNTNAP5 MUTATED 1 4 3 0 5 1
CNTNAP5 WILD-TYPE 12 12 11 11 6 8
'CNTNAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S4301.  Gene #410: 'CNTNAP5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CNTNAP5 MUTATED 3 1 0 3 3 0 3 0 1
CNTNAP5 WILD-TYPE 8 6 7 6 5 7 8 9 4
'KRT14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S4302.  Gene #411: 'KRT14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KRT14 MUTATED 0 3 5
KRT14 WILD-TYPE 42 170 142
'KRT14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S4303.  Gene #411: 'KRT14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KRT14 MUTATED 2 2 4
KRT14 WILD-TYPE 60 71 71
'KRT14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4304.  Gene #411: 'KRT14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KRT14 MUTATED 1 3 2
KRT14 WILD-TYPE 69 117 98
'KRT14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S4305.  Gene #411: 'KRT14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KRT14 MUTATED 0 1 0 2 0 2 1 0 0
KRT14 WILD-TYPE 41 25 30 27 39 67 19 14 22
'KRT14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0968 (Fisher's exact test), Q value = 0.34

Table S4306.  Gene #411: 'KRT14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KRT14 MUTATED 3 3 2 0
KRT14 WILD-TYPE 97 69 70 121
'KRT14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00668 (Fisher's exact test), Q value = 0.077

Table S4307.  Gene #411: 'KRT14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KRT14 MUTATED 0 3 5 0 0
KRT14 WILD-TYPE 59 72 69 119 38

Figure S1306.  Get High-res Image Gene #411: 'KRT14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KRT14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S4308.  Gene #411: 'KRT14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KRT14 MUTATED 2 3 1 2 0
KRT14 WILD-TYPE 49 73 60 69 95
'KRT14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.95

Table S4309.  Gene #411: 'KRT14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KRT14 MUTATED 2 1 0 1 3 0 0 0 1
KRT14 WILD-TYPE 67 47 39 15 50 20 21 38 49
'JAK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.17

Table S4310.  Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
JAK2 MUTATED 4 0 0 2 0
JAK2 WILD-TYPE 28 18 46 25 23

Figure S1307.  Get High-res Image Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'JAK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S4311.  Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
JAK2 MUTATED 4 1 1
JAK2 WILD-TYPE 39 66 35
'JAK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S4312.  Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
JAK2 MUTATED 4 17 17
JAK2 WILD-TYPE 38 156 130
'JAK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.96

Table S4313.  Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
JAK2 MUTATED 12 10 11
JAK2 WILD-TYPE 50 63 64
'JAK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0876 (Fisher's exact test), Q value = 0.32

Table S4314.  Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
JAK2 MUTATED 4 13 17
JAK2 WILD-TYPE 66 107 83
'JAK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0433 (Fisher's exact test), Q value = 0.22

Table S4315.  Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
JAK2 MUTATED 7 1 2 5 1 11 4 3 0
JAK2 WILD-TYPE 34 25 28 24 38 58 16 11 22

Figure S1308.  Get High-res Image Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'JAK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.17

Table S4316.  Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
JAK2 MUTATED 12 9 13 6
JAK2 WILD-TYPE 88 63 59 115

Figure S1309.  Get High-res Image Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'JAK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0016 (Fisher's exact test), Q value = 0.033

Table S4317.  Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
JAK2 MUTATED 10 11 12 3 4
JAK2 WILD-TYPE 49 64 62 116 34

Figure S1310.  Get High-res Image Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'JAK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0013 (Fisher's exact test), Q value = 0.03

Table S4318.  Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
JAK2 MUTATED 14 10 6 3 6
JAK2 WILD-TYPE 37 66 55 68 89

Figure S1311.  Get High-res Image Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'JAK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00288 (Fisher's exact test), Q value = 0.046

Table S4319.  Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
JAK2 MUTATED 8 9 3 3 6 6 0 4 0
JAK2 WILD-TYPE 61 39 36 13 47 14 21 34 50

Figure S1312.  Get High-res Image Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'JAK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S4320.  Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
JAK2 MUTATED 1 4 3 0 3 2
JAK2 WILD-TYPE 12 12 11 11 8 7
'JAK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.985 (Fisher's exact test), Q value = 1

Table S4321.  Gene #412: 'JAK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
JAK2 MUTATED 3 1 1 2 2 1 1 1 1
JAK2 WILD-TYPE 8 6 6 7 6 6 10 8 4
'ANKHD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S4322.  Gene #413: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ANKHD1 MUTATED 3 1 1 2 0
ANKHD1 WILD-TYPE 29 17 45 25 23
'ANKHD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S4323.  Gene #413: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ANKHD1 MUTATED 3 3 1
ANKHD1 WILD-TYPE 40 64 35
'ANKHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S4324.  Gene #413: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ANKHD1 MUTATED 3 7 19
ANKHD1 WILD-TYPE 39 166 128

Figure S1313.  Get High-res Image Gene #413: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ANKHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S4325.  Gene #413: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ANKHD1 MUTATED 11 5 6
ANKHD1 WILD-TYPE 51 68 69
'ANKHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S4326.  Gene #413: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ANKHD1 MUTATED 4 9 12
ANKHD1 WILD-TYPE 66 111 88
'ANKHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.57

Table S4327.  Gene #413: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ANKHD1 MUTATED 2 1 1 3 2 8 4 3 1
ANKHD1 WILD-TYPE 39 25 29 26 37 61 16 11 21
'ANKHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S4328.  Gene #413: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ANKHD1 MUTATED 4 9 8 8
ANKHD1 WILD-TYPE 96 63 64 113
'ANKHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0578 (Fisher's exact test), Q value = 0.26

Table S4329.  Gene #413: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ANKHD1 MUTATED 3 6 12 5 3
ANKHD1 WILD-TYPE 56 69 62 114 35
'ANKHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S4330.  Gene #413: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ANKHD1 MUTATED 4 11 4 2 7
ANKHD1 WILD-TYPE 47 65 57 69 88
'ANKHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S4331.  Gene #413: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ANKHD1 MUTATED 3 5 1 3 7 3 0 2 4
ANKHD1 WILD-TYPE 66 43 38 13 46 17 21 36 46
'ANKHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S4332.  Gene #413: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ANKHD1 MUTATED 1 2 2 0 3 1
ANKHD1 WILD-TYPE 12 14 12 11 8 8
'ANKHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S4333.  Gene #413: 'ANKHD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ANKHD1 MUTATED 1 0 0 2 1 1 2 2 0
ANKHD1 WILD-TYPE 10 7 7 7 7 6 9 7 5
'GAB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S4334.  Gene #414: 'GAB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GAB2 MUTATED 0 3 5
GAB2 WILD-TYPE 42 170 142
'GAB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4335.  Gene #414: 'GAB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GAB2 MUTATED 2 2 3
GAB2 WILD-TYPE 60 71 72
'GAB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0677 (Fisher's exact test), Q value = 0.28

Table S4336.  Gene #414: 'GAB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GAB2 MUTATED 0 3 6
GAB2 WILD-TYPE 70 117 94
'GAB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.89

Table S4337.  Gene #414: 'GAB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GAB2 MUTATED 1 1 0 1 0 5 1 0 0
GAB2 WILD-TYPE 40 25 30 28 39 64 19 14 22
'GAB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S4338.  Gene #414: 'GAB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GAB2 MUTATED 2 3 2 2
GAB2 WILD-TYPE 98 69 70 119
'GAB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S4339.  Gene #414: 'GAB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GAB2 MUTATED 1 2 3 2 1
GAB2 WILD-TYPE 58 73 71 117 37
'GAB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.73

Table S4340.  Gene #414: 'GAB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GAB2 MUTATED 2 3 0 2 1
GAB2 WILD-TYPE 49 73 61 69 94
'GAB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.89

Table S4341.  Gene #414: 'GAB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GAB2 MUTATED 2 2 1 1 1 1 0 0 0
GAB2 WILD-TYPE 67 46 38 15 52 19 21 38 50
'GAB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S4342.  Gene #414: 'GAB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GAB2 MUTATED 2 0 0 0 1 0
GAB2 WILD-TYPE 11 16 14 11 10 9
'GAB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S4343.  Gene #414: 'GAB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GAB2 MUTATED 0 0 0 1 0 1 0 1 0
GAB2 WILD-TYPE 11 7 7 8 8 6 11 8 5
'ADAM18 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S4344.  Gene #415: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ADAM18 MUTATED 3 1 0 1 0
ADAM18 WILD-TYPE 29 17 46 26 23
'ADAM18 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S4345.  Gene #415: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ADAM18 MUTATED 3 1 1
ADAM18 WILD-TYPE 40 66 35
'ADAM18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S4346.  Gene #415: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ADAM18 MUTATED 1 5 11
ADAM18 WILD-TYPE 41 168 136
'ADAM18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S4347.  Gene #415: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ADAM18 MUTATED 3 5 5
ADAM18 WILD-TYPE 59 68 70
'ADAM18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S4348.  Gene #415: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ADAM18 MUTATED 2 7 8
ADAM18 WILD-TYPE 68 113 92
'ADAM18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S4349.  Gene #415: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ADAM18 MUTATED 2 0 1 1 3 4 2 2 2
ADAM18 WILD-TYPE 39 26 29 28 36 65 18 12 20
'ADAM18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.56

Table S4350.  Gene #415: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ADAM18 MUTATED 3 7 3 5
ADAM18 WILD-TYPE 97 65 69 116
'ADAM18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.53

Table S4351.  Gene #415: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ADAM18 MUTATED 3 5 5 2 3
ADAM18 WILD-TYPE 56 70 69 117 35
'ADAM18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S4352.  Gene #415: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ADAM18 MUTATED 4 6 2 1 5
ADAM18 WILD-TYPE 47 70 59 70 90
'ADAM18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0012 (Fisher's exact test), Q value = 0.028

Table S4353.  Gene #415: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ADAM18 MUTATED 1 2 0 4 4 4 0 2 1
ADAM18 WILD-TYPE 68 46 39 12 49 16 21 36 49

Figure S1314.  Get High-res Image Gene #415: 'ADAM18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIT MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.56

Table S4354.  Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIT MUTATED 2 0 1 3 0
KIT WILD-TYPE 30 18 45 24 23
'KIT MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S4355.  Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIT MUTATED 2 2 2
KIT WILD-TYPE 41 65 34
'KIT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S4356.  Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIT MUTATED 7 43 46
KIT WILD-TYPE 35 130 101
'KIT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S4357.  Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIT MUTATED 28 32 31
KIT WILD-TYPE 34 41 44
'KIT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S4358.  Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIT MUTATED 15 33 36
KIT WILD-TYPE 55 87 64
'KIT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.01

Table S4359.  Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIT MUTATED 10 4 2 12 6 28 7 9 6
KIT WILD-TYPE 31 22 28 17 33 41 13 5 16

Figure S1315.  Get High-res Image Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'KIT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S4360.  Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIT MUTATED 40 28 23 5
KIT WILD-TYPE 60 44 49 116

Figure S1316.  Get High-res Image Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S4361.  Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIT MUTATED 21 36 32 5 2
KIT WILD-TYPE 38 39 42 114 36

Figure S1317.  Get High-res Image Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S4362.  Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIT MUTATED 27 41 16 6 5
KIT WILD-TYPE 24 35 45 65 90

Figure S1318.  Get High-res Image Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S4363.  Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIT MUTATED 28 21 9 10 15 7 1 2 2
KIT WILD-TYPE 41 27 30 6 38 13 20 36 48

Figure S1319.  Get High-res Image Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S4364.  Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIT MUTATED 4 7 3 3 7 1
KIT WILD-TYPE 9 9 11 8 4 8
'KIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.989 (Fisher's exact test), Q value = 1

Table S4365.  Gene #416: 'KIT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIT MUTATED 4 3 2 4 2 2 4 2 2
KIT WILD-TYPE 7 4 5 5 6 5 7 7 3
'HUWE1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00169 (Fisher's exact test), Q value = 0.034

Table S4366.  Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HUWE1 MUTATED 6 0 1 6 0
HUWE1 WILD-TYPE 26 18 45 21 23

Figure S1320.  Get High-res Image Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HUWE1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.1

Table S4367.  Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HUWE1 MUTATED 8 5 0
HUWE1 WILD-TYPE 35 62 36

Figure S1321.  Get High-res Image Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HUWE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00136 (Fisher's exact test), Q value = 0.03

Table S4368.  Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HUWE1 MUTATED 3 11 28
HUWE1 WILD-TYPE 39 162 119

Figure S1322.  Get High-res Image Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HUWE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0394 (Fisher's exact test), Q value = 0.21

Table S4369.  Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HUWE1 MUTATED 11 4 13
HUWE1 WILD-TYPE 51 69 62

Figure S1323.  Get High-res Image Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HUWE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S4370.  Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HUWE1 MUTATED 7 9 16
HUWE1 WILD-TYPE 63 111 84
'HUWE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S4371.  Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HUWE1 MUTATED 4 2 3 4 4 11 2 0 2
HUWE1 WILD-TYPE 37 24 27 25 35 58 18 14 20
'HUWE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.63

Table S4372.  Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HUWE1 MUTATED 8 11 11 12
HUWE1 WILD-TYPE 92 61 61 109
'HUWE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00237 (Fisher's exact test), Q value = 0.041

Table S4373.  Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HUWE1 MUTATED 6 6 16 6 8
HUWE1 WILD-TYPE 53 69 58 113 30

Figure S1324.  Get High-res Image Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HUWE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S4374.  Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HUWE1 MUTATED 5 15 8 2 11
HUWE1 WILD-TYPE 46 61 53 69 84

Figure S1325.  Get High-res Image Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HUWE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00046 (Fisher's exact test), Q value = 0.015

Table S4375.  Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HUWE1 MUTATED 4 10 0 7 6 2 3 6 3
HUWE1 WILD-TYPE 65 38 39 9 47 18 18 32 47

Figure S1326.  Get High-res Image Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HUWE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S4376.  Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HUWE1 MUTATED 2 2 2 1 2 0
HUWE1 WILD-TYPE 11 14 12 10 9 9
'HUWE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 0.75

Table S4377.  Gene #417: 'HUWE1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HUWE1 MUTATED 1 1 2 2 2 1 0 0 0
HUWE1 WILD-TYPE 10 6 5 7 6 6 11 9 5
'NTRK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.056 (Fisher's exact test), Q value = 0.25

Table S4378.  Gene #418: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NTRK3 MUTATED 3 1 0 3 0
NTRK3 WILD-TYPE 29 17 46 24 23
'NTRK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S4379.  Gene #418: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NTRK3 MUTATED 3 3 1
NTRK3 WILD-TYPE 40 64 35
'NTRK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S4380.  Gene #418: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NTRK3 MUTATED 1 9 14
NTRK3 WILD-TYPE 41 164 133
'NTRK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.98

Table S4381.  Gene #418: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NTRK3 MUTATED 4 5 8
NTRK3 WILD-TYPE 58 68 67
'NTRK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S4382.  Gene #418: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NTRK3 MUTATED 4 10 9
NTRK3 WILD-TYPE 66 110 91
'NTRK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.94

Table S4383.  Gene #418: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NTRK3 MUTATED 4 1 4 3 2 5 3 1 0
NTRK3 WILD-TYPE 37 25 26 26 37 64 17 13 22
'NTRK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.97

Table S4384.  Gene #418: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NTRK3 MUTATED 5 5 7 8
NTRK3 WILD-TYPE 95 67 65 113
'NTRK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0691 (Fisher's exact test), Q value = 0.28

Table S4385.  Gene #418: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NTRK3 MUTATED 4 5 8 3 5
NTRK3 WILD-TYPE 55 70 66 116 33
'NTRK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S4386.  Gene #418: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NTRK3 MUTATED 4 9 3 4 5
NTRK3 WILD-TYPE 47 67 58 67 90
'NTRK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S4387.  Gene #418: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NTRK3 MUTATED 5 6 3 0 2 1 3 3 2
NTRK3 WILD-TYPE 64 42 36 16 51 19 18 35 48
'NTRK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S4388.  Gene #418: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NTRK3 MUTATED 1 2 0 1 2 1
NTRK3 WILD-TYPE 12 14 14 10 9 8
'NTRK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S4389.  Gene #418: 'NTRK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NTRK3 MUTATED 1 1 1 0 0 1 2 1 0
NTRK3 WILD-TYPE 10 6 6 9 8 6 9 8 5
'EGFR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 0.34

Table S4390.  Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EGFR MUTATED 6 0 2 1 1
EGFR WILD-TYPE 26 18 44 26 22
'EGFR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00097 (Fisher's exact test), Q value = 0.024

Table S4391.  Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EGFR MUTATED 7 0 3
EGFR WILD-TYPE 36 67 33

Figure S1327.  Get High-res Image Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EGFR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S4392.  Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EGFR MUTATED 8 37 29
EGFR WILD-TYPE 34 136 118
'EGFR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S4393.  Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EGFR MUTATED 17 27 20
EGFR WILD-TYPE 45 46 55
'EGFR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00591 (Fisher's exact test), Q value = 0.073

Table S4394.  Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EGFR MUTATED 7 27 30
EGFR WILD-TYPE 63 93 70

Figure S1328.  Get High-res Image Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'EGFR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S4395.  Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EGFR MUTATED 11 3 5 5 6 21 6 3 4
EGFR WILD-TYPE 30 23 25 24 33 48 14 11 18
'EGFR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.015

Table S4396.  Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EGFR MUTATED 29 15 20 11
EGFR WILD-TYPE 71 57 52 110

Figure S1329.  Get High-res Image Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EGFR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S4397.  Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EGFR MUTATED 19 23 22 3 8
EGFR WILD-TYPE 40 52 52 116 30

Figure S1330.  Get High-res Image Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EGFR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0072

Table S4398.  Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EGFR MUTATED 17 24 14 9 8
EGFR WILD-TYPE 34 52 47 62 87

Figure S1331.  Get High-res Image Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EGFR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S4399.  Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EGFR MUTATED 18 18 9 5 10 7 0 3 2
EGFR WILD-TYPE 51 30 30 11 43 13 21 35 48

Figure S1332.  Get High-res Image Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EGFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S4400.  Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EGFR MUTATED 6 6 4 5 2 3
EGFR WILD-TYPE 7 10 10 6 9 6
'EGFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S4401.  Gene #419: 'EGFR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EGFR MUTATED 6 1 3 3 2 2 5 3 1
EGFR WILD-TYPE 5 6 4 6 6 5 6 6 4
'GATA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S4402.  Gene #420: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GATA3 MUTATED 2 0 1 0 0
GATA3 WILD-TYPE 30 18 45 27 23
'GATA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S4403.  Gene #420: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GATA3 MUTATED 2 1 0
GATA3 WILD-TYPE 41 66 36
'GATA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S4404.  Gene #420: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GATA3 MUTATED 2 5 9
GATA3 WILD-TYPE 40 168 138
'GATA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S4405.  Gene #420: 'GATA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GATA3 MUTATED 2 4 7
GATA3 WILD-TYPE 60 69 68
'GATA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S4406.  Gene #420: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GATA3 MUTATED 2 8 2
GATA3 WILD-TYPE 68 112 98
'GATA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S4407.  Gene #420: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GATA3 MUTATED 0 1 1 4 1 2 2 1 0
GATA3 WILD-TYPE 41 25 29 25 38 67 18 13 22
'GATA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S4408.  Gene #420: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GATA3 MUTATED 3 7 3 3
GATA3 WILD-TYPE 97 65 69 118
'GATA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 0.29

Table S4409.  Gene #420: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GATA3 MUTATED 1 5 7 2 1
GATA3 WILD-TYPE 58 70 67 117 37
'GATA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S4410.  Gene #420: 'GATA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GATA3 MUTATED 4 6 3 2 1
GATA3 WILD-TYPE 47 70 58 69 94
'GATA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S4411.  Gene #420: 'GATA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GATA3 MUTATED 3 2 1 1 2 3 0 3 1
GATA3 WILD-TYPE 66 46 38 15 51 17 21 35 49
'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S4412.  Gene #420: 'GATA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GATA3 MUTATED 0 0 1 0 1 1
GATA3 WILD-TYPE 13 16 13 11 10 8
'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S4413.  Gene #420: 'GATA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GATA3 MUTATED 1 0 0 0 1 0 1 0 0
GATA3 WILD-TYPE 10 7 7 9 7 7 10 9 5
'ATP13A5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S4414.  Gene #421: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATP13A5 MUTATED 2 0 0 1 0
ATP13A5 WILD-TYPE 30 18 46 26 23
'ATP13A5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S4415.  Gene #421: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATP13A5 MUTATED 2 1 0
ATP13A5 WILD-TYPE 41 66 36
'ATP13A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S4416.  Gene #421: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATP13A5 MUTATED 0 3 19
ATP13A5 WILD-TYPE 42 170 128

Figure S1333.  Get High-res Image Gene #421: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP13A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.019

Table S4417.  Gene #421: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATP13A5 MUTATED 9 0 10
ATP13A5 WILD-TYPE 53 73 65

Figure S1334.  Get High-res Image Gene #421: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ATP13A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S4418.  Gene #421: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATP13A5 MUTATED 4 5 9
ATP13A5 WILD-TYPE 66 115 91
'ATP13A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S4419.  Gene #421: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATP13A5 MUTATED 4 2 1 1 1 6 3 0 0
ATP13A5 WILD-TYPE 37 24 29 28 38 63 17 14 22
'ATP13A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.097

Table S4420.  Gene #421: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATP13A5 MUTATED 2 8 8 4
ATP13A5 WILD-TYPE 98 64 64 117

Figure S1335.  Get High-res Image Gene #421: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ATP13A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0618 (Fisher's exact test), Q value = 0.27

Table S4421.  Gene #421: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATP13A5 MUTATED 5 5 8 2 2
ATP13A5 WILD-TYPE 54 70 66 117 36
'ATP13A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S4422.  Gene #421: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATP13A5 MUTATED 3 9 5 0 5
ATP13A5 WILD-TYPE 48 67 56 71 90

Figure S1336.  Get High-res Image Gene #421: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ATP13A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S4423.  Gene #421: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATP13A5 MUTATED 3 5 1 4 3 2 0 2 2
ATP13A5 WILD-TYPE 66 43 38 12 50 18 21 36 48
'ATP13A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.56

Table S4424.  Gene #421: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ATP13A5 MUTATED 0 3 1 1 3 0
ATP13A5 WILD-TYPE 13 13 13 10 8 9
'ATP13A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S4425.  Gene #421: 'ATP13A5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ATP13A5 MUTATED 0 2 0 1 2 1 2 0 0
ATP13A5 WILD-TYPE 11 5 7 8 6 6 9 9 5
'DKK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.15

Table S4426.  Gene #422: 'DKK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DKK2 MUTATED 4 0 0 0 1
DKK2 WILD-TYPE 28 18 46 27 22

Figure S1337.  Get High-res Image Gene #422: 'DKK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DKK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0241 (Fisher's exact test), Q value = 0.16

Table S4427.  Gene #422: 'DKK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DKK2 MUTATED 4 0 1
DKK2 WILD-TYPE 39 67 35

Figure S1338.  Get High-res Image Gene #422: 'DKK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DKK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S4428.  Gene #422: 'DKK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DKK2 MUTATED 1 8 14
DKK2 WILD-TYPE 41 165 133
'DKK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.75

Table S4429.  Gene #422: 'DKK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DKK2 MUTATED 7 7 4
DKK2 WILD-TYPE 55 66 71
'DKK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.09 (Fisher's exact test), Q value = 0.33

Table S4430.  Gene #422: 'DKK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DKK2 MUTATED 4 5 12
DKK2 WILD-TYPE 66 115 88
'DKK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S4431.  Gene #422: 'DKK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DKK2 MUTATED 2 0 1 2 3 9 1 1 2
DKK2 WILD-TYPE 39 26 29 27 36 60 19 13 20
'DKK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S4432.  Gene #422: 'DKK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DKK2 MUTATED 4 6 8 5
DKK2 WILD-TYPE 96 66 64 116
'DKK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.06 (Fisher's exact test), Q value = 0.26

Table S4433.  Gene #422: 'DKK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DKK2 MUTATED 6 5 7 2 3
DKK2 WILD-TYPE 53 70 67 117 35
'DKK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.55

Table S4434.  Gene #422: 'DKK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DKK2 MUTATED 2 7 7 2 5
DKK2 WILD-TYPE 49 69 54 69 90
'DKK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0347 (Fisher's exact test), Q value = 0.2

Table S4435.  Gene #422: 'DKK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DKK2 MUTATED 5 6 0 4 1 1 1 3 2
DKK2 WILD-TYPE 64 42 39 12 52 19 20 35 48

Figure S1339.  Get High-res Image Gene #422: 'DKK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DKK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S4436.  Gene #422: 'DKK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DKK2 MUTATED 0 2 1 0 1 1
DKK2 WILD-TYPE 13 14 13 11 10 8
'DKK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S4437.  Gene #422: 'DKK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DKK2 MUTATED 2 1 0 1 1 0 0 0 0
DKK2 WILD-TYPE 9 6 7 8 7 7 11 9 5
'PIK3CA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00288 (Fisher's exact test), Q value = 0.046

Table S4438.  Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PIK3CA MUTATED 7 4 1 9 4
PIK3CA WILD-TYPE 25 14 45 18 19

Figure S1340.  Get High-res Image Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PIK3CA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S4439.  Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PIK3CA MUTATED 11 10 4
PIK3CA WILD-TYPE 32 57 32
'PIK3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.11

Table S4440.  Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PIK3CA MUTATED 15 74 83
PIK3CA WILD-TYPE 27 99 64

Figure S1341.  Get High-res Image Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIK3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S4441.  Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PIK3CA MUTATED 43 47 56
PIK3CA WILD-TYPE 19 26 19
'PIK3CA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00391 (Fisher's exact test), Q value = 0.056

Table S4442.  Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PIK3CA MUTATED 25 65 61
PIK3CA WILD-TYPE 45 55 39

Figure S1342.  Get High-res Image Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0499 (Fisher's exact test), Q value = 0.24

Table S4443.  Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PIK3CA MUTATED 21 11 10 17 14 42 12 9 15
PIK3CA WILD-TYPE 20 15 20 12 25 27 8 5 7

Figure S1343.  Get High-res Image Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S4444.  Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PIK3CA MUTATED 58 46 45 26
PIK3CA WILD-TYPE 42 26 27 95

Figure S1344.  Get High-res Image Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S4445.  Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PIK3CA MUTATED 38 56 49 21 11
PIK3CA WILD-TYPE 21 19 25 98 27

Figure S1345.  Get High-res Image Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S4446.  Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PIK3CA MUTATED 40 56 32 20 24
PIK3CA WILD-TYPE 11 20 29 51 71

Figure S1346.  Get High-res Image Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S4447.  Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PIK3CA MUTATED 42 36 11 11 30 16 5 11 10
PIK3CA WILD-TYPE 27 12 28 5 23 4 16 27 40

Figure S1347.  Get High-res Image Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S4448.  Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PIK3CA MUTATED 6 11 10 7 7 6
PIK3CA WILD-TYPE 7 5 4 4 4 3
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.54

Table S4449.  Gene #423: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PIK3CA MUTATED 5 5 4 4 7 3 10 6 3
PIK3CA WILD-TYPE 6 2 3 5 1 4 1 3 2
'CLVS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S4450.  Gene #424: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CLVS2 MUTATED 2 2 5
CLVS2 WILD-TYPE 40 171 142
'CLVS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S4451.  Gene #424: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CLVS2 MUTATED 1 3 3
CLVS2 WILD-TYPE 61 70 72
'CLVS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4452.  Gene #424: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CLVS2 MUTATED 2 3 3
CLVS2 WILD-TYPE 68 117 97
'CLVS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 0.89

Table S4453.  Gene #424: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CLVS2 MUTATED 0 1 0 1 3 3 0 0 0
CLVS2 WILD-TYPE 41 25 30 28 36 66 20 14 22
'CLVS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.93

Table S4454.  Gene #424: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CLVS2 MUTATED 3 3 1 2
CLVS2 WILD-TYPE 97 69 71 119
'CLVS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0685 (Fisher's exact test), Q value = 0.28

Table S4455.  Gene #424: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CLVS2 MUTATED 1 3 3 0 2
CLVS2 WILD-TYPE 58 72 71 119 36
'CLVS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S4456.  Gene #424: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CLVS2 MUTATED 2 4 1 0 1
CLVS2 WILD-TYPE 49 72 60 71 94
'CLVS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S4457.  Gene #424: 'CLVS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CLVS2 MUTATED 2 0 2 2 1 0 0 1 0
CLVS2 WILD-TYPE 67 48 37 14 52 20 21 37 50
'EP300 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00849 (Fisher's exact test), Q value = 0.086

Table S4458.  Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EP300 MUTATED 6 0 1 4 0
EP300 WILD-TYPE 26 18 45 23 23

Figure S1348.  Get High-res Image Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EP300 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.004 (Fisher's exact test), Q value = 0.057

Table S4459.  Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EP300 MUTATED 8 3 0
EP300 WILD-TYPE 35 64 36

Figure S1349.  Get High-res Image Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EP300 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0048

Table S4460.  Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EP300 MUTATED 2 7 27
EP300 WILD-TYPE 40 166 120

Figure S1350.  Get High-res Image Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EP300 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0924 (Fisher's exact test), Q value = 0.33

Table S4461.  Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EP300 MUTATED 10 4 11
EP300 WILD-TYPE 52 69 64
'EP300 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S4462.  Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EP300 MUTATED 7 9 15
EP300 WILD-TYPE 63 111 85
'EP300 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S4463.  Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EP300 MUTATED 4 3 1 2 3 11 1 3 3
EP300 WILD-TYPE 37 23 29 27 36 58 19 11 19
'EP300 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.15

Table S4464.  Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EP300 MUTATED 5 14 5 12
EP300 WILD-TYPE 95 58 67 109

Figure S1351.  Get High-res Image Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EP300 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.012

Table S4465.  Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EP300 MUTATED 4 5 15 4 8
EP300 WILD-TYPE 55 70 59 115 30

Figure S1352.  Get High-res Image Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EP300 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S4466.  Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EP300 MUTATED 5 17 3 0 9
EP300 WILD-TYPE 46 59 58 71 86

Figure S1353.  Get High-res Image Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EP300 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0517 (Fisher's exact test), Q value = 0.24

Table S4467.  Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EP300 MUTATED 8 5 1 5 6 1 2 5 1
EP300 WILD-TYPE 61 43 38 11 47 19 19 33 49
'EP300 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 0.34

Table S4468.  Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EP300 MUTATED 2 0 2 0 3 0
EP300 WILD-TYPE 11 16 12 11 8 9
'EP300 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S4469.  Gene #425: 'EP300 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EP300 MUTATED 0 0 0 3 1 1 1 0 1
EP300 WILD-TYPE 11 7 7 6 7 6 10 9 4
'ITGAV MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.19

Table S4470.  Gene #426: 'ITGAV MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ITGAV MUTATED 0 4 11
ITGAV WILD-TYPE 42 169 136

Figure S1354.  Get High-res Image Gene #426: 'ITGAV MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ITGAV MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S4471.  Gene #426: 'ITGAV MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ITGAV MUTATED 7 3 3
ITGAV WILD-TYPE 55 70 72
'ITGAV MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.3

Table S4472.  Gene #426: 'ITGAV MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ITGAV MUTATED 1 3 8
ITGAV WILD-TYPE 69 117 92
'ITGAV MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.77

Table S4473.  Gene #426: 'ITGAV MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ITGAV MUTATED 1 0 0 1 1 7 1 0 1
ITGAV WILD-TYPE 40 26 30 28 38 62 19 14 21
'ITGAV MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0483 (Fisher's exact test), Q value = 0.24

Table S4474.  Gene #426: 'ITGAV MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ITGAV MUTATED 2 6 5 2
ITGAV WILD-TYPE 98 66 67 119

Figure S1355.  Get High-res Image Gene #426: 'ITGAV MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ITGAV MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0438 (Fisher's exact test), Q value = 0.22

Table S4475.  Gene #426: 'ITGAV MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ITGAV MUTATED 2 4 7 1 1
ITGAV WILD-TYPE 57 71 67 118 37

Figure S1356.  Get High-res Image Gene #426: 'ITGAV MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ITGAV MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S4476.  Gene #426: 'ITGAV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ITGAV MUTATED 1 9 1 1 3
ITGAV WILD-TYPE 50 67 60 70 92

Figure S1357.  Get High-res Image Gene #426: 'ITGAV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ITGAV MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S4477.  Gene #426: 'ITGAV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ITGAV MUTATED 5 4 0 1 3 0 0 1 1
ITGAV WILD-TYPE 64 44 39 15 50 20 21 37 49
'ITGAV MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S4478.  Gene #426: 'ITGAV MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ITGAV MUTATED 1 0 2 0 1 0
ITGAV WILD-TYPE 12 16 12 11 10 9
'ITGAV MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S4479.  Gene #426: 'ITGAV MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ITGAV MUTATED 0 0 0 1 0 1 2 0 0
ITGAV WILD-TYPE 11 7 7 8 8 6 9 9 5
'PPP1R3A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0968 (Fisher's exact test), Q value = 0.34

Table S4480.  Gene #427: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PPP1R3A MUTATED 4 0 1 3 0
PPP1R3A WILD-TYPE 28 18 45 24 23
'PPP1R3A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S4481.  Gene #427: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PPP1R3A MUTATED 5 2 1
PPP1R3A WILD-TYPE 38 65 35
'PPP1R3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00734 (Fisher's exact test), Q value = 0.08

Table S4482.  Gene #427: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PPP1R3A MUTATED 0 12 20
PPP1R3A WILD-TYPE 42 161 127

Figure S1358.  Get High-res Image Gene #427: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PPP1R3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S4483.  Gene #427: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PPP1R3A MUTATED 8 7 9
PPP1R3A WILD-TYPE 54 66 66
'PPP1R3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.97

Table S4484.  Gene #427: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PPP1R3A MUTATED 4 12 9
PPP1R3A WILD-TYPE 66 108 91
'PPP1R3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S4485.  Gene #427: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PPP1R3A MUTATED 1 1 3 5 4 8 0 0 3
PPP1R3A WILD-TYPE 40 25 27 24 35 61 20 14 19
'PPP1R3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S4486.  Gene #427: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PPP1R3A MUTATED 11 8 4 9
PPP1R3A WILD-TYPE 89 64 68 112
'PPP1R3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0668 (Fisher's exact test), Q value = 0.28

Table S4487.  Gene #427: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PPP1R3A MUTATED 3 10 10 5 4
PPP1R3A WILD-TYPE 56 65 64 114 34
'PPP1R3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S4488.  Gene #427: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PPP1R3A MUTATED 6 9 5 2 8
PPP1R3A WILD-TYPE 45 67 56 69 87
'PPP1R3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.94

Table S4489.  Gene #427: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PPP1R3A MUTATED 8 4 2 1 5 4 1 3 2
PPP1R3A WILD-TYPE 61 44 37 15 48 16 20 35 48
'PPP1R3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0897 (Fisher's exact test), Q value = 0.33

Table S4490.  Gene #427: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PPP1R3A MUTATED 0 0 2 0 2 0
PPP1R3A WILD-TYPE 13 16 12 11 9 9
'PPP1R3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.74

Table S4491.  Gene #427: 'PPP1R3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PPP1R3A MUTATED 0 0 0 1 2 0 1 0 0
PPP1R3A WILD-TYPE 11 7 7 8 6 7 10 9 5
'PTPN11 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4492.  Gene #428: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTPN11 MUTATED 3 15 12
PTPN11 WILD-TYPE 39 158 135
'PTPN11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0941 (Fisher's exact test), Q value = 0.33

Table S4493.  Gene #428: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTPN11 MUTATED 4 14 10
PTPN11 WILD-TYPE 58 59 65
'PTPN11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.27

Table S4494.  Gene #428: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTPN11 MUTATED 2 15 9
PTPN11 WILD-TYPE 68 105 91
'PTPN11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S4495.  Gene #428: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTPN11 MUTATED 3 2 2 7 2 7 1 1 1
PTPN11 WILD-TYPE 38 24 28 22 37 62 19 13 21
'PTPN11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00274 (Fisher's exact test), Q value = 0.045

Table S4496.  Gene #428: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTPN11 MUTATED 14 8 6 2
PTPN11 WILD-TYPE 86 64 66 119

Figure S1359.  Get High-res Image Gene #428: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTPN11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S4497.  Gene #428: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTPN11 MUTATED 5 14 9 0 2
PTPN11 WILD-TYPE 54 61 65 119 36

Figure S1360.  Get High-res Image Gene #428: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPN11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0097 (Fisher's exact test), Q value = 0.093

Table S4498.  Gene #428: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTPN11 MUTATED 8 11 4 5 2
PTPN11 WILD-TYPE 43 65 57 66 93

Figure S1361.  Get High-res Image Gene #428: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PTPN11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0817 (Fisher's exact test), Q value = 0.31

Table S4499.  Gene #428: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTPN11 MUTATED 8 5 3 2 7 3 0 2 0
PTPN11 WILD-TYPE 61 43 36 14 46 17 21 36 50
'PTPN11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.62

Table S4500.  Gene #428: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PTPN11 MUTATED 2 1 2 2 4 0
PTPN11 WILD-TYPE 11 15 12 9 7 9
'PTPN11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S4501.  Gene #428: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PTPN11 MUTATED 0 0 1 4 2 1 2 1 0
PTPN11 WILD-TYPE 11 7 6 5 6 6 9 8 5
'KIAA1409 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S4502.  Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIAA1409 MUTATED 8 0 0 5 0
KIAA1409 WILD-TYPE 24 18 46 22 23

Figure S1362.  Get High-res Image Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIAA1409 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0048

Table S4503.  Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIAA1409 MUTATED 11 2 0
KIAA1409 WILD-TYPE 32 65 36

Figure S1363.  Get High-res Image Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KIAA1409 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00222 (Fisher's exact test), Q value = 0.04

Table S4504.  Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA1409 MUTATED 4 9 25
KIAA1409 WILD-TYPE 38 164 122

Figure S1364.  Get High-res Image Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA1409 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S4505.  Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA1409 MUTATED 12 6 7
KIAA1409 WILD-TYPE 50 67 68
'KIAA1409 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S4506.  Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA1409 MUTATED 6 12 16
KIAA1409 WILD-TYPE 64 108 84
'KIAA1409 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.72

Table S4507.  Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA1409 MUTATED 6 2 1 2 7 7 5 2 2
KIAA1409 WILD-TYPE 35 24 29 27 32 62 15 12 20
'KIAA1409 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S4508.  Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA1409 MUTATED 6 11 10 11
KIAA1409 WILD-TYPE 94 61 62 110
'KIAA1409 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.009

Table S4509.  Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA1409 MUTATED 7 4 13 4 10
KIAA1409 WILD-TYPE 52 71 61 115 28

Figure S1365.  Get High-res Image Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA1409 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S4510.  Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA1409 MUTATED 3 12 5 4 14
KIAA1409 WILD-TYPE 48 64 56 67 81
'KIAA1409 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S4511.  Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA1409 MUTATED 5 11 1 1 7 3 1 7 2
KIAA1409 WILD-TYPE 64 37 38 15 46 17 20 31 48

Figure S1366.  Get High-res Image Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA1409 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S4512.  Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIAA1409 MUTATED 0 2 1 2 1 1
KIAA1409 WILD-TYPE 13 14 13 9 10 8
'KIAA1409 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0821 (Fisher's exact test), Q value = 0.31

Table S4513.  Gene #429: 'KIAA1409 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIAA1409 MUTATED 1 0 0 0 0 0 4 2 0
KIAA1409 WILD-TYPE 10 7 7 9 8 7 7 7 5
'EPHA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00127 (Fisher's exact test), Q value = 0.029

Table S4514.  Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EPHA3 MUTATED 9 0 2 4 0
EPHA3 WILD-TYPE 23 18 44 23 23

Figure S1367.  Get High-res Image Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EPHA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S4515.  Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EPHA3 MUTATED 8 5 2
EPHA3 WILD-TYPE 35 62 34
'EPHA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00164 (Fisher's exact test), Q value = 0.034

Table S4516.  Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EPHA3 MUTATED 3 18 35
EPHA3 WILD-TYPE 39 155 112

Figure S1368.  Get High-res Image Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EPHA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S4517.  Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EPHA3 MUTATED 13 10 19
EPHA3 WILD-TYPE 49 63 56
'EPHA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00776 (Fisher's exact test), Q value = 0.082

Table S4518.  Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EPHA3 MUTATED 5 19 25
EPHA3 WILD-TYPE 65 101 75

Figure S1369.  Get High-res Image Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'EPHA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S4519.  Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EPHA3 MUTATED 5 5 5 2 7 18 3 2 2
EPHA3 WILD-TYPE 36 21 25 27 32 51 17 12 20
'EPHA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0399 (Fisher's exact test), Q value = 0.21

Table S4520.  Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EPHA3 MUTATED 12 19 12 14
EPHA3 WILD-TYPE 88 53 60 107

Figure S1370.  Get High-res Image Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EPHA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00051 (Fisher's exact test), Q value = 0.016

Table S4521.  Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EPHA3 MUTATED 7 12 22 8 8
EPHA3 WILD-TYPE 52 63 52 111 30

Figure S1371.  Get High-res Image Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EPHA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S4522.  Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EPHA3 MUTATED 7 22 8 6 13
EPHA3 WILD-TYPE 44 54 53 65 82

Figure S1372.  Get High-res Image Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EPHA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S4523.  Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EPHA3 MUTATED 9 12 5 10 6 4 2 5 3
EPHA3 WILD-TYPE 60 36 34 6 47 16 19 33 47

Figure S1373.  Get High-res Image Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EPHA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S4524.  Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EPHA3 MUTATED 4 2 2 2 3 1
EPHA3 WILD-TYPE 9 14 12 9 8 8
'EPHA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S4525.  Gene #430: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EPHA3 MUTATED 2 0 1 3 0 1 3 2 2
EPHA3 WILD-TYPE 9 7 6 6 8 6 8 7 3
'HFE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S4526.  Gene #431: 'HFE2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HFE2 MUTATED 1 4 2
HFE2 WILD-TYPE 41 169 145
'HFE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 0.26

Table S4527.  Gene #431: 'HFE2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HFE2 MUTATED 1 4 0
HFE2 WILD-TYPE 61 69 75
'HFE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S4528.  Gene #431: 'HFE2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HFE2 MUTATED 1 3 3
HFE2 WILD-TYPE 69 117 97
'HFE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S4529.  Gene #431: 'HFE2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HFE2 MUTATED 0 0 2 2 0 2 1 0 0
HFE2 WILD-TYPE 41 26 28 27 39 67 19 14 22
'HFE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S4530.  Gene #431: 'HFE2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HFE2 MUTATED 4 0 1 3
HFE2 WILD-TYPE 96 72 71 118
'HFE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0814 (Fisher's exact test), Q value = 0.31

Table S4531.  Gene #431: 'HFE2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HFE2 MUTATED 0 4 1 1 2
HFE2 WILD-TYPE 59 71 73 118 36
'HFE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.98

Table S4532.  Gene #431: 'HFE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HFE2 MUTATED 1 3 0 2 2
HFE2 WILD-TYPE 50 73 61 69 93
'HFE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.74

Table S4533.  Gene #431: 'HFE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HFE2 MUTATED 1 1 3 0 0 0 0 2 1
HFE2 WILD-TYPE 68 47 36 16 53 20 21 36 49
'MYH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.18

Table S4534.  Gene #432: 'MYH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MYH1 MUTATED 4 0 0 2 0
MYH1 WILD-TYPE 28 18 46 25 23

Figure S1374.  Get High-res Image Gene #432: 'MYH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MYH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S4535.  Gene #432: 'MYH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MYH1 MUTATED 3 2 1
MYH1 WILD-TYPE 40 65 35
'MYH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S4536.  Gene #432: 'MYH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MYH1 MUTATED 3 11 18
MYH1 WILD-TYPE 39 162 129
'MYH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S4537.  Gene #432: 'MYH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MYH1 MUTATED 9 9 8
MYH1 WILD-TYPE 53 64 67
'MYH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S4538.  Gene #432: 'MYH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MYH1 MUTATED 6 8 12
MYH1 WILD-TYPE 64 112 88
'MYH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S4539.  Gene #432: 'MYH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MYH1 MUTATED 6 1 2 1 1 9 3 1 2
MYH1 WILD-TYPE 35 25 28 28 38 60 17 13 20
'MYH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.57

Table S4540.  Gene #432: 'MYH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MYH1 MUTATED 10 9 7 6
MYH1 WILD-TYPE 90 63 65 115
'MYH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0212 (Fisher's exact test), Q value = 0.15

Table S4541.  Gene #432: 'MYH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MYH1 MUTATED 7 10 9 3 3
MYH1 WILD-TYPE 52 65 65 116 35

Figure S1375.  Get High-res Image Gene #432: 'MYH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.94

Table S4542.  Gene #432: 'MYH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MYH1 MUTATED 5 10 5 6 6
MYH1 WILD-TYPE 46 66 56 65 89
'MYH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0727 (Fisher's exact test), Q value = 0.29

Table S4543.  Gene #432: 'MYH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MYH1 MUTATED 10 6 1 4 4 1 1 4 1
MYH1 WILD-TYPE 59 42 38 12 49 19 20 34 49
'MYH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S4544.  Gene #432: 'MYH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MYH1 MUTATED 3 1 1 2 2 0
MYH1 WILD-TYPE 10 15 13 9 9 9
'MYH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S4545.  Gene #432: 'MYH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MYH1 MUTATED 1 1 1 3 0 0 1 2 0
MYH1 WILD-TYPE 10 6 6 6 8 7 10 7 5
'EEA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S4546.  Gene #433: 'EEA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EEA1 MUTATED 2 0 0 1 0
EEA1 WILD-TYPE 30 18 46 26 23
'EEA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S4547.  Gene #433: 'EEA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EEA1 MUTATED 2 1 0
EEA1 WILD-TYPE 41 66 36
'EEA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0072

Table S4548.  Gene #433: 'EEA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EEA1 MUTATED 1 0 12
EEA1 WILD-TYPE 41 173 135

Figure S1376.  Get High-res Image Gene #433: 'EEA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EEA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.2

Table S4549.  Gene #433: 'EEA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EEA1 MUTATED 5 0 5
EEA1 WILD-TYPE 57 73 70

Figure S1377.  Get High-res Image Gene #433: 'EEA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'EEA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S4550.  Gene #433: 'EEA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EEA1 MUTATED 2 6 5
EEA1 WILD-TYPE 68 114 95
'EEA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S4551.  Gene #433: 'EEA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EEA1 MUTATED 1 2 1 2 3 3 1 0 0
EEA1 WILD-TYPE 40 24 29 27 36 66 19 14 22
'EEA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.14

Table S4552.  Gene #433: 'EEA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EEA1 MUTATED 0 6 3 4
EEA1 WILD-TYPE 100 66 69 117

Figure S1378.  Get High-res Image Gene #433: 'EEA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EEA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S4553.  Gene #433: 'EEA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EEA1 MUTATED 1 1 6 3 2
EEA1 WILD-TYPE 58 74 68 116 36
'EEA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.14

Table S4554.  Gene #433: 'EEA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EEA1 MUTATED 0 6 1 0 6
EEA1 WILD-TYPE 51 70 60 71 89

Figure S1379.  Get High-res Image Gene #433: 'EEA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EEA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S4555.  Gene #433: 'EEA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EEA1 MUTATED 3 2 0 2 0 1 0 3 2
EEA1 WILD-TYPE 66 46 39 14 53 19 21 35 48
'GRM7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.94

Table S4556.  Gene #434: 'GRM7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GRM7 MUTATED 3 1 2 2 0
GRM7 WILD-TYPE 29 17 44 25 23
'GRM7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S4557.  Gene #434: 'GRM7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GRM7 MUTATED 3 3 2
GRM7 WILD-TYPE 40 64 34
'GRM7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0527 (Fisher's exact test), Q value = 0.25

Table S4558.  Gene #434: 'GRM7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GRM7 MUTATED 2 7 16
GRM7 WILD-TYPE 40 166 131
'GRM7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S4559.  Gene #434: 'GRM7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GRM7 MUTATED 7 4 7
GRM7 WILD-TYPE 55 69 68
'GRM7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S4560.  Gene #434: 'GRM7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GRM7 MUTATED 2 8 10
GRM7 WILD-TYPE 68 112 90
'GRM7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.75

Table S4561.  Gene #434: 'GRM7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GRM7 MUTATED 1 0 1 2 3 6 2 2 3
GRM7 WILD-TYPE 40 26 29 27 36 63 18 12 19
'GRM7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S4562.  Gene #434: 'GRM7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GRM7 MUTATED 5 8 6 6
GRM7 WILD-TYPE 95 64 66 115
'GRM7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.45

Table S4563.  Gene #434: 'GRM7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GRM7 MUTATED 3 4 10 5 3
GRM7 WILD-TYPE 56 71 64 114 35
'GRM7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S4564.  Gene #434: 'GRM7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GRM7 MUTATED 3 9 5 2 4
GRM7 WILD-TYPE 48 67 56 69 91
'GRM7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S4565.  Gene #434: 'GRM7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GRM7 MUTATED 5 4 1 4 5 0 1 2 1
GRM7 WILD-TYPE 64 44 38 12 48 20 20 36 49
'GRM7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S4566.  Gene #434: 'GRM7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GRM7 MUTATED 0 1 2 0 2 0
GRM7 WILD-TYPE 13 15 12 11 9 9
'GRM7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 0.98

Table S4567.  Gene #434: 'GRM7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GRM7 MUTATED 0 1 0 1 1 0 2 0 0
GRM7 WILD-TYPE 11 6 7 8 7 7 9 9 5
'GRM8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S4568.  Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GRM8 MUTATED 2 0 0 2 0
GRM8 WILD-TYPE 30 18 46 25 23
'GRM8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S4569.  Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GRM8 MUTATED 3 1 0
GRM8 WILD-TYPE 40 66 36
'GRM8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00266 (Fisher's exact test), Q value = 0.044

Table S4570.  Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GRM8 MUTATED 3 3 15
GRM8 WILD-TYPE 39 170 132

Figure S1380.  Get High-res Image Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GRM8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00508 (Fisher's exact test), Q value = 0.067

Table S4571.  Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GRM8 MUTATED 10 1 6
GRM8 WILD-TYPE 52 72 69

Figure S1381.  Get High-res Image Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GRM8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.14

Table S4572.  Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GRM8 MUTATED 1 6 12
GRM8 WILD-TYPE 69 114 88

Figure S1382.  Get High-res Image Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GRM8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S4573.  Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GRM8 MUTATED 4 0 1 3 2 7 1 1 0
GRM8 WILD-TYPE 37 26 29 26 37 62 19 13 22
'GRM8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00214 (Fisher's exact test), Q value = 0.039

Table S4574.  Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GRM8 MUTATED 1 7 9 4
GRM8 WILD-TYPE 99 65 63 117

Figure S1383.  Get High-res Image Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GRM8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00187 (Fisher's exact test), Q value = 0.036

Table S4575.  Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GRM8 MUTATED 6 2 9 1 3
GRM8 WILD-TYPE 53 73 65 118 35

Figure S1384.  Get High-res Image Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GRM8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.22

Table S4576.  Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GRM8 MUTATED 1 9 5 1 4
GRM8 WILD-TYPE 50 67 56 70 91

Figure S1385.  Get High-res Image Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GRM8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00194 (Fisher's exact test), Q value = 0.037

Table S4577.  Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GRM8 MUTATED 6 6 0 4 0 1 0 2 1
GRM8 WILD-TYPE 63 42 39 12 53 19 21 36 49

Figure S1386.  Get High-res Image Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GRM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S4578.  Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GRM8 MUTATED 0 4 1 1 3 1
GRM8 WILD-TYPE 13 12 13 10 8 8
'GRM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0844 (Fisher's exact test), Q value = 0.32

Table S4579.  Gene #435: 'GRM8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GRM8 MUTATED 5 1 1 2 0 0 1 0 0
GRM8 WILD-TYPE 6 6 6 7 8 7 10 9 5
'TAF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S4580.  Gene #436: 'TAF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TAF1 MUTATED 1 0 1 3 0
TAF1 WILD-TYPE 31 18 45 24 23
'TAF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S4581.  Gene #436: 'TAF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TAF1 MUTATED 3 2 0
TAF1 WILD-TYPE 40 65 36
'TAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S4582.  Gene #436: 'TAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TAF1 MUTATED 1 8 13
TAF1 WILD-TYPE 41 165 134
'TAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S4583.  Gene #436: 'TAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TAF1 MUTATED 7 6 3
TAF1 WILD-TYPE 55 67 72
'TAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0616 (Fisher's exact test), Q value = 0.27

Table S4584.  Gene #436: 'TAF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TAF1 MUTATED 1 9 10
TAF1 WILD-TYPE 69 111 90
'TAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S4585.  Gene #436: 'TAF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TAF1 MUTATED 3 0 1 3 3 7 1 2 0
TAF1 WILD-TYPE 38 26 29 26 36 62 19 12 22
'TAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S4586.  Gene #436: 'TAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TAF1 MUTATED 5 6 6 5
TAF1 WILD-TYPE 95 66 66 116
'TAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S4587.  Gene #436: 'TAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TAF1 MUTATED 6 4 6 3 3
TAF1 WILD-TYPE 53 71 68 116 35
'TAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S4588.  Gene #436: 'TAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TAF1 MUTATED 2 6 4 3 6
TAF1 WILD-TYPE 49 70 57 68 89
'TAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S4589.  Gene #436: 'TAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TAF1 MUTATED 4 6 1 2 1 2 0 4 1
TAF1 WILD-TYPE 65 42 38 14 52 18 21 34 49
'TAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S4590.  Gene #436: 'TAF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TAF1 MUTATED 1 1 1 2 2 0
TAF1 WILD-TYPE 12 15 13 9 9 9
'TAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.95

Table S4591.  Gene #436: 'TAF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TAF1 MUTATED 0 1 1 2 0 0 1 1 1
TAF1 WILD-TYPE 11 6 6 7 8 7 10 8 4
'ANKRD30A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S4592.  Gene #437: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ANKRD30A MUTATED 0 16 12
ANKRD30A WILD-TYPE 42 157 135
'ANKRD30A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S4593.  Gene #437: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ANKRD30A MUTATED 8 10 7
ANKRD30A WILD-TYPE 54 63 68
'ANKRD30A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S4594.  Gene #437: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ANKRD30A MUTATED 3 7 12
ANKRD30A WILD-TYPE 67 113 88
'ANKRD30A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S4595.  Gene #437: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ANKRD30A MUTATED 5 1 1 3 0 10 0 1 1
ANKRD30A WILD-TYPE 36 25 29 26 39 59 20 13 21
'ANKRD30A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00618 (Fisher's exact test), Q value = 0.074

Table S4596.  Gene #437: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ANKRD30A MUTATED 12 6 8 2
ANKRD30A WILD-TYPE 88 66 64 119

Figure S1387.  Get High-res Image Gene #437: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ANKRD30A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.009

Table S4597.  Gene #437: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ANKRD30A MUTATED 7 12 7 1 1
ANKRD30A WILD-TYPE 52 63 67 118 37

Figure S1388.  Get High-res Image Gene #437: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKRD30A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0608 (Fisher's exact test), Q value = 0.26

Table S4598.  Gene #437: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ANKRD30A MUTATED 5 10 7 3 3
ANKRD30A WILD-TYPE 46 66 54 68 92
'ANKRD30A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0825 (Fisher's exact test), Q value = 0.31

Table S4599.  Gene #437: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ANKRD30A MUTATED 9 6 1 1 6 3 0 1 1
ANKRD30A WILD-TYPE 60 42 38 15 47 17 21 37 49
'ANKRD30A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S4600.  Gene #437: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ANKRD30A MUTATED 2 1 2 2 1 0
ANKRD30A WILD-TYPE 11 15 12 9 10 9
'ANKRD30A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S4601.  Gene #437: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ANKRD30A MUTATED 0 0 1 1 2 1 2 0 1
ANKRD30A WILD-TYPE 11 7 6 8 6 6 9 9 4
'PTPRD MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.25

Table S4602.  Gene #438: 'PTPRD MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PTPRD MUTATED 5 0 1 2 0
PTPRD WILD-TYPE 27 18 45 25 23
'PTPRD MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S4603.  Gene #438: 'PTPRD MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PTPRD MUTATED 5 2 1
PTPRD WILD-TYPE 38 65 35
'PTPRD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S4604.  Gene #438: 'PTPRD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTPRD MUTATED 1 13 18
PTPRD WILD-TYPE 41 160 129
'PTPRD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S4605.  Gene #438: 'PTPRD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTPRD MUTATED 10 6 8
PTPRD WILD-TYPE 52 67 67
'PTPRD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 0.24

Table S4606.  Gene #438: 'PTPRD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTPRD MUTATED 4 6 14
PTPRD WILD-TYPE 66 114 86
'PTPRD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 0.99

Table S4607.  Gene #438: 'PTPRD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTPRD MUTATED 4 1 1 1 3 10 2 1 1
PTPRD WILD-TYPE 37 25 29 28 36 59 18 13 21
'PTPRD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.98

Table S4608.  Gene #438: 'PTPRD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTPRD MUTATED 10 8 6 8
PTPRD WILD-TYPE 90 64 66 113
'PTPRD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 0.098

Table S4609.  Gene #438: 'PTPRD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTPRD MUTATED 7 4 12 4 5
PTPRD WILD-TYPE 52 71 62 115 33

Figure S1389.  Get High-res Image Gene #438: 'PTPRD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPRD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S4610.  Gene #438: 'PTPRD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTPRD MUTATED 8 10 4 3 6
PTPRD WILD-TYPE 43 66 57 68 89
'PTPRD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00149 (Fisher's exact test), Q value = 0.032

Table S4611.  Gene #438: 'PTPRD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTPRD MUTATED 4 7 3 4 3 6 1 3 0
PTPRD WILD-TYPE 65 41 36 12 50 14 20 35 50

Figure S1390.  Get High-res Image Gene #438: 'PTPRD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTPRD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S4612.  Gene #438: 'PTPRD MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PTPRD MUTATED 0 2 1 0 0 1
PTPRD WILD-TYPE 13 14 13 11 11 8
'PTPRD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0831 (Fisher's exact test), Q value = 0.31

Table S4613.  Gene #438: 'PTPRD MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PTPRD MUTATED 3 0 0 0 0 1 0 0 0
PTPRD WILD-TYPE 8 7 7 9 8 6 11 9 5
'CSMD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S4614.  Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CSMD3 MUTATED 15 1 1 3 1
CSMD3 WILD-TYPE 17 17 45 24 22

Figure S1391.  Get High-res Image Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CSMD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S4615.  Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CSMD3 MUTATED 15 4 2
CSMD3 WILD-TYPE 28 63 34

Figure S1392.  Get High-res Image Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CSMD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.02

Table S4616.  Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CSMD3 MUTATED 11 26 48
CSMD3 WILD-TYPE 31 147 99

Figure S1393.  Get High-res Image Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CSMD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.51

Table S4617.  Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CSMD3 MUTATED 20 17 27
CSMD3 WILD-TYPE 42 56 48
'CSMD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S4618.  Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CSMD3 MUTATED 10 27 33
CSMD3 WILD-TYPE 60 93 67

Figure S1394.  Get High-res Image Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CSMD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0444 (Fisher's exact test), Q value = 0.22

Table S4619.  Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CSMD3 MUTATED 7 3 6 5 7 28 5 5 4
CSMD3 WILD-TYPE 34 23 24 24 32 41 15 9 18

Figure S1395.  Get High-res Image Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CSMD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.19

Table S4620.  Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CSMD3 MUTATED 22 26 17 21
CSMD3 WILD-TYPE 78 46 55 100

Figure S1396.  Get High-res Image Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CSMD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S4621.  Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CSMD3 MUTATED 12 24 26 8 16
CSMD3 WILD-TYPE 47 51 48 111 22

Figure S1397.  Get High-res Image Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CSMD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00243 (Fisher's exact test), Q value = 0.042

Table S4622.  Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CSMD3 MUTATED 14 28 15 7 19
CSMD3 WILD-TYPE 37 48 46 64 76

Figure S1398.  Get High-res Image Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CSMD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S4623.  Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CSMD3 MUTATED 17 13 5 6 13 10 1 15 3
CSMD3 WILD-TYPE 52 35 34 10 40 10 20 23 47

Figure S1399.  Get High-res Image Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S4624.  Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CSMD3 MUTATED 6 3 3 2 6 3
CSMD3 WILD-TYPE 7 13 11 9 5 6
'CSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.9

Table S4625.  Gene #439: 'CSMD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CSMD3 MUTATED 1 3 3 4 1 3 4 3 1
CSMD3 WILD-TYPE 10 4 4 5 7 4 7 6 4
'ZCCHC6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S4626.  Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZCCHC6 MUTATED 3 0 2 1 1
ZCCHC6 WILD-TYPE 29 18 44 26 22
'ZCCHC6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S4627.  Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZCCHC6 MUTATED 3 3 1
ZCCHC6 WILD-TYPE 40 64 35
'ZCCHC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.15

Table S4628.  Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZCCHC6 MUTATED 1 4 13
ZCCHC6 WILD-TYPE 41 169 134

Figure S1400.  Get High-res Image Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00781 (Fisher's exact test), Q value = 0.083

Table S4629.  Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZCCHC6 MUTATED 3 0 8
ZCCHC6 WILD-TYPE 59 73 67

Figure S1401.  Get High-res Image Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S4630.  Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZCCHC6 MUTATED 3 6 4
ZCCHC6 WILD-TYPE 67 114 96
'ZCCHC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.54

Table S4631.  Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZCCHC6 MUTATED 1 3 1 1 0 4 1 2 0
ZCCHC6 WILD-TYPE 40 23 29 28 39 65 19 12 22
'ZCCHC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00721 (Fisher's exact test), Q value = 0.08

Table S4632.  Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZCCHC6 MUTATED 1 9 2 6
ZCCHC6 WILD-TYPE 99 63 70 115

Figure S1402.  Get High-res Image Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00034 (Fisher's exact test), Q value = 0.013

Table S4633.  Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZCCHC6 MUTATED 1 0 10 3 4
ZCCHC6 WILD-TYPE 58 75 64 116 34

Figure S1403.  Get High-res Image Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00617 (Fisher's exact test), Q value = 0.074

Table S4634.  Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZCCHC6 MUTATED 0 10 1 2 4
ZCCHC6 WILD-TYPE 51 66 60 69 91

Figure S1404.  Get High-res Image Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00491 (Fisher's exact test), Q value = 0.065

Table S4635.  Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZCCHC6 MUTATED 2 1 1 5 2 1 0 4 1
ZCCHC6 WILD-TYPE 67 47 38 11 51 19 21 34 49

Figure S1405.  Get High-res Image Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 0.16

Table S4636.  Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZCCHC6 MUTATED 0 0 2 0 3 0
ZCCHC6 WILD-TYPE 13 16 12 11 8 9

Figure S1406.  Get High-res Image Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0528 (Fisher's exact test), Q value = 0.25

Table S4637.  Gene #440: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZCCHC6 MUTATED 0 0 0 3 0 0 2 0 0
ZCCHC6 WILD-TYPE 11 7 7 6 8 7 9 9 5
'FUBP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00069 (Fisher's exact test), Q value = 0.02

Table S4638.  Gene #441: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FUBP3 MUTATED 0 0 9
FUBP3 WILD-TYPE 42 173 138

Figure S1407.  Get High-res Image Gene #441: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FUBP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S4639.  Gene #441: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FUBP3 MUTATED 3 0 4
FUBP3 WILD-TYPE 59 73 71
'FUBP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S4640.  Gene #441: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FUBP3 MUTATED 2 1 4
FUBP3 WILD-TYPE 68 119 96
'FUBP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S4641.  Gene #441: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FUBP3 MUTATED 1 0 1 0 0 3 2 0 0
FUBP3 WILD-TYPE 40 26 29 29 39 66 18 14 22
'FUBP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0506 (Fisher's exact test), Q value = 0.24

Table S4642.  Gene #441: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FUBP3 MUTATED 0 3 4 2
FUBP3 WILD-TYPE 100 69 68 119
'FUBP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S4643.  Gene #441: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FUBP3 MUTATED 0 1 6 1 1
FUBP3 WILD-TYPE 59 74 68 118 37

Figure S1408.  Get High-res Image Gene #441: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FUBP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0837 (Fisher's exact test), Q value = 0.31

Table S4644.  Gene #441: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FUBP3 MUTATED 0 5 1 0 3
FUBP3 WILD-TYPE 51 71 60 71 92
'FUBP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0962 (Fisher's exact test), Q value = 0.34

Table S4645.  Gene #441: 'FUBP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FUBP3 MUTATED 1 3 0 2 0 1 0 1 1
FUBP3 WILD-TYPE 68 45 39 14 53 19 21 37 49
'SYT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.16

Table S4646.  Gene #442: 'SYT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SYT1 MUTATED 1 2 10
SYT1 WILD-TYPE 41 171 137

Figure S1409.  Get High-res Image Gene #442: 'SYT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SYT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S4647.  Gene #442: 'SYT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SYT1 MUTATED 4 3 5
SYT1 WILD-TYPE 58 70 70
'SYT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S4648.  Gene #442: 'SYT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SYT1 MUTATED 1 5 7
SYT1 WILD-TYPE 69 115 93
'SYT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.99

Table S4649.  Gene #442: 'SYT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SYT1 MUTATED 1 2 1 1 1 6 0 1 0
SYT1 WILD-TYPE 40 24 29 28 38 63 20 13 22
'SYT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S4650.  Gene #442: 'SYT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SYT1 MUTATED 3 6 2 2
SYT1 WILD-TYPE 97 66 70 119
'SYT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0987 (Fisher's exact test), Q value = 0.34

Table S4651.  Gene #442: 'SYT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SYT1 MUTATED 1 4 6 2 0
SYT1 WILD-TYPE 58 71 68 117 38
'SYT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.19

Table S4652.  Gene #442: 'SYT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SYT1 MUTATED 1 8 1 1 2
SYT1 WILD-TYPE 50 68 60 70 93

Figure S1410.  Get High-res Image Gene #442: 'SYT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SYT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.76

Table S4653.  Gene #442: 'SYT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SYT1 MUTATED 6 2 1 1 1 1 0 0 1
SYT1 WILD-TYPE 63 46 38 15 52 19 21 38 49
'OSBPL11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S4654.  Gene #443: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OSBPL11 MUTATED 4 0 0 1 0
OSBPL11 WILD-TYPE 28 18 46 26 23

Figure S1411.  Get High-res Image Gene #443: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'OSBPL11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00256 (Fisher's exact test), Q value = 0.043

Table S4655.  Gene #443: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OSBPL11 MUTATED 5 0 0
OSBPL11 WILD-TYPE 38 67 36

Figure S1412.  Get High-res Image Gene #443: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'OSBPL11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.28

Table S4656.  Gene #443: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OSBPL11 MUTATED 1 4 11
OSBPL11 WILD-TYPE 41 169 136
'OSBPL11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S4657.  Gene #443: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OSBPL11 MUTATED 3 3 5
OSBPL11 WILD-TYPE 59 70 70
'OSBPL11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S4658.  Gene #443: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OSBPL11 MUTATED 2 2 7
OSBPL11 WILD-TYPE 68 118 93
'OSBPL11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S4659.  Gene #443: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OSBPL11 MUTATED 2 0 0 0 1 6 2 0 0
OSBPL11 WILD-TYPE 39 26 30 29 38 63 18 14 22
'OSBPL11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S4660.  Gene #443: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OSBPL11 MUTATED 4 2 5 5
OSBPL11 WILD-TYPE 96 70 67 116
'OSBPL11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0409 (Fisher's exact test), Q value = 0.21

Table S4661.  Gene #443: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OSBPL11 MUTATED 2 5 4 1 4
OSBPL11 WILD-TYPE 57 70 70 118 34

Figure S1413.  Get High-res Image Gene #443: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OSBPL11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S4662.  Gene #443: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OSBPL11 MUTATED 3 2 3 3 3
OSBPL11 WILD-TYPE 48 74 58 68 92
'OSBPL11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.54

Table S4663.  Gene #443: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OSBPL11 MUTATED 4 2 0 1 2 2 0 3 0
OSBPL11 WILD-TYPE 65 46 39 15 51 18 21 35 50
'OSBPL11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S4664.  Gene #443: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OSBPL11 MUTATED 2 1 2 1 1 0
OSBPL11 WILD-TYPE 11 15 12 10 10 9
'OSBPL11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S4665.  Gene #443: 'OSBPL11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OSBPL11 MUTATED 1 0 1 1 2 0 0 0 2
OSBPL11 WILD-TYPE 10 7 6 8 6 7 11 9 3
'SFRS18 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 0.34

Table S4666.  Gene #444: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SFRS18 MUTATED 3 0 0 1 0
SFRS18 WILD-TYPE 29 18 46 26 23
'SFRS18 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S4667.  Gene #444: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SFRS18 MUTATED 2 1 1
SFRS18 WILD-TYPE 41 66 35
'SFRS18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0096

Table S4668.  Gene #444: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SFRS18 MUTATED 1 0 11
SFRS18 WILD-TYPE 41 173 136

Figure S1414.  Get High-res Image Gene #444: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SFRS18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S4669.  Gene #444: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SFRS18 MUTATED 2 0 6
SFRS18 WILD-TYPE 60 73 69

Figure S1415.  Get High-res Image Gene #444: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SFRS18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.99

Table S4670.  Gene #444: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SFRS18 MUTATED 1 4 4
SFRS18 WILD-TYPE 69 116 96
'SFRS18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S4671.  Gene #444: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SFRS18 MUTATED 2 1 2 1 1 1 1 0 0
SFRS18 WILD-TYPE 39 25 28 28 38 68 19 14 22
'SFRS18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.22

Table S4672.  Gene #444: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SFRS18 MUTATED 0 5 3 4
SFRS18 WILD-TYPE 100 67 69 117

Figure S1416.  Get High-res Image Gene #444: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SFRS18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0913 (Fisher's exact test), Q value = 0.33

Table S4673.  Gene #444: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SFRS18 MUTATED 1 1 6 2 2
SFRS18 WILD-TYPE 58 74 68 117 36
'SFRS18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S4674.  Gene #444: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SFRS18 MUTATED 0 5 2 1 3
SFRS18 WILD-TYPE 51 71 59 70 92
'SFRS18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00145 (Fisher's exact test), Q value = 0.032

Table S4675.  Gene #444: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SFRS18 MUTATED 0 3 0 4 1 1 0 1 1
SFRS18 WILD-TYPE 69 45 39 12 52 19 21 37 49

Figure S1417.  Get High-res Image Gene #444: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SFRS18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S4676.  Gene #444: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SFRS18 MUTATED 0 1 0 0 2 0
SFRS18 WILD-TYPE 13 15 14 11 9 9
'SFRS18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S4677.  Gene #444: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SFRS18 MUTATED 0 0 0 2 0 0 1 0 0
SFRS18 WILD-TYPE 11 7 7 7 8 7 10 9 5
'MAP9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S4678.  Gene #445: 'MAP9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MAP9 MUTATED 2 0 0 1 0
MAP9 WILD-TYPE 30 18 46 26 23
'MAP9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S4679.  Gene #445: 'MAP9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MAP9 MUTATED 2 1 0
MAP9 WILD-TYPE 41 66 36
'MAP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S4680.  Gene #445: 'MAP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAP9 MUTATED 2 4 10
MAP9 WILD-TYPE 40 169 137
'MAP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.55

Table S4681.  Gene #445: 'MAP9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAP9 MUTATED 6 2 5
MAP9 WILD-TYPE 56 71 70
'MAP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S4682.  Gene #445: 'MAP9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAP9 MUTATED 1 4 7
MAP9 WILD-TYPE 69 116 93
'MAP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S4683.  Gene #445: 'MAP9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAP9 MUTATED 2 0 0 3 3 4 0 0 0
MAP9 WILD-TYPE 39 26 30 26 36 65 20 14 22
'MAP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S4684.  Gene #445: 'MAP9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAP9 MUTATED 4 4 5 3
MAP9 WILD-TYPE 96 68 67 118
'MAP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0888 (Fisher's exact test), Q value = 0.32

Table S4685.  Gene #445: 'MAP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAP9 MUTATED 3 4 6 1 2
MAP9 WILD-TYPE 56 71 68 118 36
'MAP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0615 (Fisher's exact test), Q value = 0.27

Table S4686.  Gene #445: 'MAP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAP9 MUTATED 3 7 3 0 3
MAP9 WILD-TYPE 48 69 58 71 92
'MAP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0705 (Fisher's exact test), Q value = 0.29

Table S4687.  Gene #445: 'MAP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAP9 MUTATED 2 4 2 3 4 0 0 1 0
MAP9 WILD-TYPE 67 44 37 13 49 20 21 37 50
'MAP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0954 (Fisher's exact test), Q value = 0.34

Table S4688.  Gene #445: 'MAP9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAP9 MUTATED 0 0 0 1 2 0
MAP9 WILD-TYPE 13 16 14 10 9 9
'MAP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S4689.  Gene #445: 'MAP9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAP9 MUTATED 0 0 1 1 0 0 1 0 0
MAP9 WILD-TYPE 11 7 6 8 8 7 10 9 5
'TNPO1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00776 (Fisher's exact test), Q value = 0.082

Table S4690.  Gene #446: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TNPO1 MUTATED 5 0 0 1 0
TNPO1 WILD-TYPE 27 18 46 26 23

Figure S1418.  Get High-res Image Gene #446: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TNPO1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S4691.  Gene #446: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TNPO1 MUTATED 4 1 1
TNPO1 WILD-TYPE 39 66 35
'TNPO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00223 (Fisher's exact test), Q value = 0.04

Table S4692.  Gene #446: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TNPO1 MUTATED 1 2 13
TNPO1 WILD-TYPE 41 171 134

Figure S1419.  Get High-res Image Gene #446: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TNPO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S4693.  Gene #446: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TNPO1 MUTATED 4 2 5
TNPO1 WILD-TYPE 58 71 70
'TNPO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4694.  Gene #446: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TNPO1 MUTATED 2 5 4
TNPO1 WILD-TYPE 68 115 96
'TNPO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S4695.  Gene #446: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TNPO1 MUTATED 0 1 1 2 1 4 0 2 0
TNPO1 WILD-TYPE 41 25 29 27 38 65 20 12 22
'TNPO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.98

Table S4696.  Gene #446: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TNPO1 MUTATED 3 4 2 7
TNPO1 WILD-TYPE 97 68 70 114
'TNPO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0889 (Fisher's exact test), Q value = 0.32

Table S4697.  Gene #446: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TNPO1 MUTATED 1 2 6 3 4
TNPO1 WILD-TYPE 58 73 68 116 34
'TNPO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S4698.  Gene #446: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TNPO1 MUTATED 1 6 1 2 6
TNPO1 WILD-TYPE 50 70 60 69 89
'TNPO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S4699.  Gene #446: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TNPO1 MUTATED 3 2 2 1 2 2 0 3 1
TNPO1 WILD-TYPE 66 46 37 15 51 18 21 35 49
'TNPO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.6

Table S4700.  Gene #446: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TNPO1 MUTATED 0 0 1 1 2 0
TNPO1 WILD-TYPE 13 16 13 10 9 9
'TNPO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.92

Table S4701.  Gene #446: 'TNPO1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TNPO1 MUTATED 0 0 0 1 1 0 2 0 0
TNPO1 WILD-TYPE 11 7 7 8 7 7 9 9 5
'CLCNKA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S4702.  Gene #447: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CLCNKA MUTATED 2 2 6
CLCNKA WILD-TYPE 40 171 141
'CLCNKA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S4703.  Gene #447: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CLCNKA MUTATED 2 2 5
CLCNKA WILD-TYPE 60 71 70
'CLCNKA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S4704.  Gene #447: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CLCNKA MUTATED 1 4 3
CLCNKA WILD-TYPE 69 116 97
'CLCNKA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.991 (Fisher's exact test), Q value = 1

Table S4705.  Gene #447: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CLCNKA MUTATED 1 0 1 1 1 3 1 0 0
CLCNKA WILD-TYPE 40 26 29 28 38 66 19 14 22
'CLCNKA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S4706.  Gene #447: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CLCNKA MUTATED 2 6 1 1
CLCNKA WILD-TYPE 98 66 71 120

Figure S1420.  Get High-res Image Gene #447: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CLCNKA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0048 (Fisher's exact test), Q value = 0.064

Table S4707.  Gene #447: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CLCNKA MUTATED 0 2 7 1 0
CLCNKA WILD-TYPE 59 73 67 118 38

Figure S1421.  Get High-res Image Gene #447: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CLCNKA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S4708.  Gene #447: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CLCNKA MUTATED 1 5 0 2 2
CLCNKA WILD-TYPE 50 71 61 69 93
'CLCNKA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S4709.  Gene #447: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CLCNKA MUTATED 4 0 1 2 1 0 1 1 0
CLCNKA WILD-TYPE 65 48 38 14 52 20 20 37 50
'CLCNKA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S4710.  Gene #447: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CLCNKA MUTATED 1 0 1 0 1 0
CLCNKA WILD-TYPE 12 16 13 11 10 9
'CLCNKA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S4711.  Gene #447: 'CLCNKA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CLCNKA MUTATED 0 0 0 1 0 0 1 1 0
CLCNKA WILD-TYPE 11 7 7 8 8 7 10 8 5
'CREBBP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S4712.  Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CREBBP MUTATED 12 1 0 4 0
CREBBP WILD-TYPE 20 17 46 23 23

Figure S1422.  Get High-res Image Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CREBBP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00063 (Fisher's exact test), Q value = 0.018

Table S4713.  Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CREBBP MUTATED 12 4 1
CREBBP WILD-TYPE 31 63 35

Figure S1423.  Get High-res Image Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CREBBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00614 (Fisher's exact test), Q value = 0.074

Table S4714.  Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CREBBP MUTATED 5 19 35
CREBBP WILD-TYPE 37 154 112

Figure S1424.  Get High-res Image Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CREBBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00505 (Fisher's exact test), Q value = 0.067

Table S4715.  Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CREBBP MUTATED 16 6 20
CREBBP WILD-TYPE 46 67 55

Figure S1425.  Get High-res Image Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CREBBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0898 (Fisher's exact test), Q value = 0.33

Table S4716.  Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CREBBP MUTATED 6 24 19
CREBBP WILD-TYPE 64 96 81
'CREBBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.75

Table S4717.  Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CREBBP MUTATED 4 2 6 6 6 13 7 2 3
CREBBP WILD-TYPE 37 24 24 23 33 56 13 12 19
'CREBBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S4718.  Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CREBBP MUTATED 15 18 10 17
CREBBP WILD-TYPE 85 54 62 104
'CREBBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0084

Table S4719.  Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CREBBP MUTATED 8 15 18 7 12
CREBBP WILD-TYPE 51 60 56 112 26

Figure S1426.  Get High-res Image Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CREBBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00049 (Fisher's exact test), Q value = 0.016

Table S4720.  Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CREBBP MUTATED 10 24 5 5 15
CREBBP WILD-TYPE 41 52 56 66 80

Figure S1427.  Get High-res Image Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CREBBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00242 (Fisher's exact test), Q value = 0.042

Table S4721.  Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CREBBP MUTATED 13 8 1 6 10 6 4 9 2
CREBBP WILD-TYPE 56 40 38 10 43 14 17 29 48

Figure S1428.  Get High-res Image Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CREBBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S4722.  Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CREBBP MUTATED 4 1 4 1 2 1
CREBBP WILD-TYPE 9 15 10 10 9 8
'CREBBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0376 (Fisher's exact test), Q value = 0.21

Table S4723.  Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CREBBP MUTATED 0 0 0 2 2 0 5 2 2
CREBBP WILD-TYPE 11 7 7 7 6 7 6 7 3

Figure S1429.  Get High-res Image Gene #448: 'CREBBP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'INTS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.76

Table S4724.  Gene #449: 'INTS4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
INTS4 MUTATED 2 6 10
INTS4 WILD-TYPE 40 167 137
'INTS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S4725.  Gene #449: 'INTS4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
INTS4 MUTATED 6 6 4
INTS4 WILD-TYPE 56 67 71
'INTS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.27

Table S4726.  Gene #449: 'INTS4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
INTS4 MUTATED 1 4 9
INTS4 WILD-TYPE 69 116 91
'INTS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.093 (Fisher's exact test), Q value = 0.33

Table S4727.  Gene #449: 'INTS4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
INTS4 MUTATED 2 1 0 1 0 9 1 0 0
INTS4 WILD-TYPE 39 25 30 28 39 60 19 14 22
'INTS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.18

Table S4728.  Gene #449: 'INTS4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
INTS4 MUTATED 8 5 4 1
INTS4 WILD-TYPE 92 67 68 120

Figure S1430.  Get High-res Image Gene #449: 'INTS4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'INTS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0381 (Fisher's exact test), Q value = 0.21

Table S4729.  Gene #449: 'INTS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
INTS4 MUTATED 4 6 6 1 1
INTS4 WILD-TYPE 55 69 68 118 37

Figure S1431.  Get High-res Image Gene #449: 'INTS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'INTS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.54

Table S4730.  Gene #449: 'INTS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
INTS4 MUTATED 3 6 5 1 3
INTS4 WILD-TYPE 48 70 56 70 92
'INTS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0533 (Fisher's exact test), Q value = 0.25

Table S4731.  Gene #449: 'INTS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
INTS4 MUTATED 2 6 3 3 1 0 1 1 1
INTS4 WILD-TYPE 67 42 36 13 52 20 20 37 49
'INTS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.51

Table S4732.  Gene #449: 'INTS4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
INTS4 MUTATED 1 1 0 1 3 0
INTS4 WILD-TYPE 12 15 14 10 8 9
'INTS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S4733.  Gene #449: 'INTS4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
INTS4 MUTATED 1 0 1 2 0 0 2 0 0
INTS4 WILD-TYPE 10 7 6 7 8 7 9 9 5
'PRKAA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S4734.  Gene #450: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PRKAA2 MUTATED 2 0 0 2 1
PRKAA2 WILD-TYPE 30 18 46 25 22
'PRKAA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S4735.  Gene #450: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PRKAA2 MUTATED 2 1 2
PRKAA2 WILD-TYPE 41 66 34
'PRKAA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0064 (Fisher's exact test), Q value = 0.075

Table S4736.  Gene #450: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRKAA2 MUTATED 1 1 10
PRKAA2 WILD-TYPE 41 172 137

Figure S1432.  Get High-res Image Gene #450: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PRKAA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S4737.  Gene #450: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRKAA2 MUTATED 3 0 4
PRKAA2 WILD-TYPE 59 73 71
'PRKAA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0476 (Fisher's exact test), Q value = 0.23

Table S4738.  Gene #450: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRKAA2 MUTATED 2 1 7
PRKAA2 WILD-TYPE 68 119 93

Figure S1433.  Get High-res Image Gene #450: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PRKAA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S4739.  Gene #450: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRKAA2 MUTATED 1 0 0 1 2 5 1 0 0
PRKAA2 WILD-TYPE 40 26 30 28 37 64 19 14 22
'PRKAA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0809 (Fisher's exact test), Q value = 0.31

Table S4740.  Gene #450: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRKAA2 MUTATED 0 4 3 5
PRKAA2 WILD-TYPE 100 68 69 116
'PRKAA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S4741.  Gene #450: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRKAA2 MUTATED 1 2 4 4 1
PRKAA2 WILD-TYPE 58 73 70 115 37
'PRKAA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.88

Table S4742.  Gene #450: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRKAA2 MUTATED 0 4 1 2 3
PRKAA2 WILD-TYPE 51 72 60 69 92
'PRKAA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S4743.  Gene #450: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRKAA2 MUTATED 0 2 0 2 3 0 0 1 2
PRKAA2 WILD-TYPE 69 46 39 14 50 20 21 37 48
'PRKAA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S4744.  Gene #450: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PRKAA2 MUTATED 0 0 1 0 2 0
PRKAA2 WILD-TYPE 13 16 13 11 9 9
'PRKAA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S4745.  Gene #450: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PRKAA2 MUTATED 0 0 0 1 1 1 0 0 0
PRKAA2 WILD-TYPE 11 7 7 8 7 6 11 9 5
'LNX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 0.17

Table S4746.  Gene #451: 'LNX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LNX2 MUTATED 4 0 0 2 0
LNX2 WILD-TYPE 28 18 46 25 23

Figure S1434.  Get High-res Image Gene #451: 'LNX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LNX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S4747.  Gene #451: 'LNX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LNX2 MUTATED 5 1 0
LNX2 WILD-TYPE 38 66 36

Figure S1435.  Get High-res Image Gene #451: 'LNX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LNX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S4748.  Gene #451: 'LNX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LNX2 MUTATED 3 4 9
LNX2 WILD-TYPE 39 169 138
'LNX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S4749.  Gene #451: 'LNX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LNX2 MUTATED 4 3 2
LNX2 WILD-TYPE 58 70 73
'LNX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S4750.  Gene #451: 'LNX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LNX2 MUTATED 2 6 6
LNX2 WILD-TYPE 68 114 94
'LNX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S4751.  Gene #451: 'LNX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LNX2 MUTATED 2 0 1 2 2 6 0 0 1
LNX2 WILD-TYPE 39 26 29 27 37 63 20 14 21
'LNX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.62

Table S4752.  Gene #451: 'LNX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LNX2 MUTATED 3 1 5 7
LNX2 WILD-TYPE 97 71 67 114
'LNX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00526 (Fisher's exact test), Q value = 0.068

Table S4753.  Gene #451: 'LNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LNX2 MUTATED 2 3 4 1 6
LNX2 WILD-TYPE 57 72 70 118 32

Figure S1436.  Get High-res Image Gene #451: 'LNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LNX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S4754.  Gene #451: 'LNX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LNX2 MUTATED 2 4 3 3 2
LNX2 WILD-TYPE 49 72 58 68 93
'LNX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S4755.  Gene #451: 'LNX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LNX2 MUTATED 2 3 2 0 3 0 2 2 0
LNX2 WILD-TYPE 67 45 37 16 50 20 19 36 50
'ATG2B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S4756.  Gene #452: 'ATG2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATG2B MUTATED 2 0 0 3 1
ATG2B WILD-TYPE 30 18 46 24 22
'ATG2B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S4757.  Gene #452: 'ATG2B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATG2B MUTATED 2 2 2
ATG2B WILD-TYPE 41 65 34
'ATG2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 0.18

Table S4758.  Gene #452: 'ATG2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATG2B MUTATED 1 3 11
ATG2B WILD-TYPE 41 170 136

Figure S1437.  Get High-res Image Gene #452: 'ATG2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATG2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S4759.  Gene #452: 'ATG2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATG2B MUTATED 3 1 5
ATG2B WILD-TYPE 59 72 70
'ATG2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S4760.  Gene #452: 'ATG2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATG2B MUTATED 2 4 7
ATG2B WILD-TYPE 68 116 93
'ATG2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.94

Table S4761.  Gene #452: 'ATG2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATG2B MUTATED 1 0 2 1 2 6 0 1 0
ATG2B WILD-TYPE 40 26 28 28 37 63 20 13 22
'ATG2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S4762.  Gene #452: 'ATG2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATG2B MUTATED 1 5 3 6
ATG2B WILD-TYPE 99 67 69 115
'ATG2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S4763.  Gene #452: 'ATG2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATG2B MUTATED 1 2 6 3 3
ATG2B WILD-TYPE 58 73 68 116 35
'ATG2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S4764.  Gene #452: 'ATG2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATG2B MUTATED 0 6 1 4 3
ATG2B WILD-TYPE 51 70 60 67 92
'ATG2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S4765.  Gene #452: 'ATG2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATG2B MUTATED 2 3 1 2 3 1 0 2 0
ATG2B WILD-TYPE 67 45 38 14 50 19 21 36 50
'CHRM2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S4766.  Gene #453: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CHRM2 MUTATED 2 0 1 2 1
CHRM2 WILD-TYPE 30 18 45 25 22
'CHRM2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S4767.  Gene #453: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CHRM2 MUTATED 4 1 1
CHRM2 WILD-TYPE 39 66 35
'CHRM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00091 (Fisher's exact test), Q value = 0.023

Table S4768.  Gene #453: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CHRM2 MUTATED 1 4 18
CHRM2 WILD-TYPE 41 169 129

Figure S1438.  Get High-res Image Gene #453: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CHRM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S4769.  Gene #453: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CHRM2 MUTATED 6 2 7
CHRM2 WILD-TYPE 56 71 68
'CHRM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S4770.  Gene #453: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CHRM2 MUTATED 5 11 5
CHRM2 WILD-TYPE 65 109 95
'CHRM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S4771.  Gene #453: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CHRM2 MUTATED 2 3 2 2 6 1 2 2 1
CHRM2 WILD-TYPE 39 23 28 27 33 68 18 12 21
'CHRM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 0.24

Table S4772.  Gene #453: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CHRM2 MUTATED 2 9 4 7
CHRM2 WILD-TYPE 98 63 68 114

Figure S1439.  Get High-res Image Gene #453: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CHRM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.34

Table S4773.  Gene #453: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CHRM2 MUTATED 4 2 8 4 4
CHRM2 WILD-TYPE 55 73 66 115 34
'CHRM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S4774.  Gene #453: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CHRM2 MUTATED 4 5 4 2 7
CHRM2 WILD-TYPE 47 71 57 69 88
'CHRM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S4775.  Gene #453: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CHRM2 MUTATED 3 1 3 2 2 4 1 4 2
CHRM2 WILD-TYPE 66 47 36 14 51 16 20 34 48
'CHRM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S4776.  Gene #453: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CHRM2 MUTATED 0 1 1 0 2 0
CHRM2 WILD-TYPE 13 15 13 11 9 9
'CHRM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.54

Table S4777.  Gene #453: 'CHRM2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CHRM2 MUTATED 0 1 0 2 1 0 0 0 0
CHRM2 WILD-TYPE 11 6 7 7 7 7 11 9 5
'NUDCD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.61

Table S4778.  Gene #454: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NUDCD1 MUTATED 2 0 0 1 0
NUDCD1 WILD-TYPE 30 18 46 26 23
'NUDCD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S4779.  Gene #454: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NUDCD1 MUTATED 2 0 1
NUDCD1 WILD-TYPE 41 67 35
'NUDCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.94

Table S4780.  Gene #454: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NUDCD1 MUTATED 1 3 5
NUDCD1 WILD-TYPE 41 170 142
'NUDCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S4781.  Gene #454: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NUDCD1 MUTATED 2 1 3
NUDCD1 WILD-TYPE 60 72 72
'NUDCD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0504 (Fisher's exact test), Q value = 0.24

Table S4782.  Gene #454: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NUDCD1 MUTATED 0 2 6
NUDCD1 WILD-TYPE 70 118 94
'NUDCD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.94

Table S4783.  Gene #454: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NUDCD1 MUTATED 1 1 0 0 1 3 2 0 0
NUDCD1 WILD-TYPE 40 25 30 29 38 66 18 14 22
'NUDCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4784.  Gene #454: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NUDCD1 MUTATED 2 2 2 3
NUDCD1 WILD-TYPE 98 70 70 118
'NUDCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S4785.  Gene #454: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NUDCD1 MUTATED 3 1 2 1 2
NUDCD1 WILD-TYPE 56 74 72 118 36
'NUDCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S4786.  Gene #454: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NUDCD1 MUTATED 0 3 2 2 1
NUDCD1 WILD-TYPE 51 73 59 69 94
'NUDCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S4787.  Gene #454: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NUDCD1 MUTATED 1 3 0 2 1 0 0 1 0
NUDCD1 WILD-TYPE 68 45 39 14 52 20 21 37 50
'NUDCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S4788.  Gene #454: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NUDCD1 MUTATED 1 1 0 1 0 0
NUDCD1 WILD-TYPE 12 15 14 10 11 9
'NUDCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S4789.  Gene #454: 'NUDCD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NUDCD1 MUTATED 0 1 0 0 0 0 1 1 0
NUDCD1 WILD-TYPE 11 6 7 9 8 7 10 8 5
'INSM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00265 (Fisher's exact test), Q value = 0.044

Table S4790.  Gene #455: 'INSM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
INSM2 MUTATED 2 0 8
INSM2 WILD-TYPE 40 173 139

Figure S1440.  Get High-res Image Gene #455: 'INSM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'INSM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0395 (Fisher's exact test), Q value = 0.21

Table S4791.  Gene #455: 'INSM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
INSM2 MUTATED 4 0 6
INSM2 WILD-TYPE 58 73 69

Figure S1441.  Get High-res Image Gene #455: 'INSM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'INSM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0746 (Fisher's exact test), Q value = 0.3

Table S4792.  Gene #455: 'INSM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
INSM2 MUTATED 1 1 6
INSM2 WILD-TYPE 69 119 94
'INSM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S4793.  Gene #455: 'INSM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
INSM2 MUTATED 1 0 0 2 0 4 0 1 0
INSM2 WILD-TYPE 40 26 30 27 39 65 20 13 22
'INSM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.011

Table S4794.  Gene #455: 'INSM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
INSM2 MUTATED 0 5 5 0
INSM2 WILD-TYPE 100 67 67 121

Figure S1442.  Get High-res Image Gene #455: 'INSM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'INSM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.0087

Table S4795.  Gene #455: 'INSM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
INSM2 MUTATED 1 1 8 0 0
INSM2 WILD-TYPE 58 74 66 119 38

Figure S1443.  Get High-res Image Gene #455: 'INSM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'INSM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.054 (Fisher's exact test), Q value = 0.25

Table S4796.  Gene #455: 'INSM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
INSM2 MUTATED 0 6 2 1 1
INSM2 WILD-TYPE 51 70 59 70 94
'INSM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0549 (Fisher's exact test), Q value = 0.25

Table S4797.  Gene #455: 'INSM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
INSM2 MUTATED 3 2 0 3 1 0 0 1 0
INSM2 WILD-TYPE 66 46 39 13 52 20 21 37 50
'INSM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 0.32

Table S4798.  Gene #455: 'INSM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
INSM2 MUTATED 0 0 2 0 2 0
INSM2 WILD-TYPE 13 16 12 11 9 9
'INSM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S4799.  Gene #455: 'INSM2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
INSM2 MUTATED 0 0 0 1 1 1 1 0 0
INSM2 WILD-TYPE 11 7 7 8 7 6 10 9 5
'GOLGB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00288 (Fisher's exact test), Q value = 0.046

Table S4800.  Gene #456: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GOLGB1 MUTATED 5 0 0 4 0
GOLGB1 WILD-TYPE 27 18 46 23 23

Figure S1444.  Get High-res Image Gene #456: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GOLGB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0531 (Fisher's exact test), Q value = 0.25

Table S4801.  Gene #456: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GOLGB1 MUTATED 6 2 1
GOLGB1 WILD-TYPE 37 65 35
'GOLGB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S4802.  Gene #456: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GOLGB1 MUTATED 2 12 24
GOLGB1 WILD-TYPE 40 161 123

Figure S1445.  Get High-res Image Gene #456: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GOLGB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S4803.  Gene #456: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GOLGB1 MUTATED 11 6 12
GOLGB1 WILD-TYPE 51 67 63
'GOLGB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S4804.  Gene #456: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GOLGB1 MUTATED 6 12 17
GOLGB1 WILD-TYPE 64 108 83
'GOLGB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.95

Table S4805.  Gene #456: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GOLGB1 MUTATED 4 4 2 3 2 10 4 2 4
GOLGB1 WILD-TYPE 37 22 28 26 37 59 16 12 18
'GOLGB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S4806.  Gene #456: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GOLGB1 MUTATED 8 10 10 10
GOLGB1 WILD-TYPE 92 62 62 111
'GOLGB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0516 (Fisher's exact test), Q value = 0.24

Table S4807.  Gene #456: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GOLGB1 MUTATED 7 9 11 5 6
GOLGB1 WILD-TYPE 52 66 63 114 32
'GOLGB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.53

Table S4808.  Gene #456: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GOLGB1 MUTATED 5 12 6 3 11
GOLGB1 WILD-TYPE 46 64 55 68 84
'GOLGB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0711 (Fisher's exact test), Q value = 0.29

Table S4809.  Gene #456: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GOLGB1 MUTATED 6 8 5 4 3 3 0 6 2
GOLGB1 WILD-TYPE 63 40 34 12 50 17 21 32 48
'GOLGB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.94

Table S4810.  Gene #456: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GOLGB1 MUTATED 1 1 2 1 3 2
GOLGB1 WILD-TYPE 12 15 12 10 8 7
'GOLGB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S4811.  Gene #456: 'GOLGB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GOLGB1 MUTATED 1 1 0 1 2 0 3 2 0
GOLGB1 WILD-TYPE 10 6 7 8 6 7 8 7 5
'KIAA1804 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S4812.  Gene #457: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIAA1804 MUTATED 4 0 1 1 0
KIAA1804 WILD-TYPE 28 18 45 26 23
'KIAA1804 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S4813.  Gene #457: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIAA1804 MUTATED 4 1 1
KIAA1804 WILD-TYPE 39 66 35
'KIAA1804 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 0.19

Table S4814.  Gene #457: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA1804 MUTATED 2 3 11
KIAA1804 WILD-TYPE 40 170 136

Figure S1446.  Get High-res Image Gene #457: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA1804 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S4815.  Gene #457: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA1804 MUTATED 4 1 5
KIAA1804 WILD-TYPE 58 72 70
'KIAA1804 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.25

Table S4816.  Gene #457: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA1804 MUTATED 0 8 6
KIAA1804 WILD-TYPE 70 112 94
'KIAA1804 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 0.98

Table S4817.  Gene #457: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA1804 MUTATED 1 1 1 4 2 4 0 0 1
KIAA1804 WILD-TYPE 40 25 29 25 37 65 20 14 21
'KIAA1804 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S4818.  Gene #457: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA1804 MUTATED 3 4 3 6
KIAA1804 WILD-TYPE 97 68 69 115
'KIAA1804 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.57

Table S4819.  Gene #457: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA1804 MUTATED 1 2 6 4 3
KIAA1804 WILD-TYPE 58 73 68 115 35
'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S4820.  Gene #457: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA1804 MUTATED 2 4 2 1 7
KIAA1804 WILD-TYPE 49 72 59 70 88
'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S4821.  Gene #457: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA1804 MUTATED 3 2 1 1 2 1 1 3 2
KIAA1804 WILD-TYPE 66 46 38 15 51 19 20 35 48
'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.56

Table S4822.  Gene #457: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIAA1804 MUTATED 0 0 2 0 1 0
KIAA1804 WILD-TYPE 13 16 12 11 10 9
'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S4823.  Gene #457: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIAA1804 MUTATED 0 0 0 1 1 0 1 0 0
KIAA1804 WILD-TYPE 11 7 7 8 7 7 10 9 5
'C10ORF79 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 0.3

Table S4824.  Gene #458: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C10ORF79 MUTATED 2 1 0 3 0
C10ORF79 WILD-TYPE 30 17 46 24 23
'C10ORF79 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0862 (Fisher's exact test), Q value = 0.32

Table S4825.  Gene #458: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C10ORF79 MUTATED 4 2 0
C10ORF79 WILD-TYPE 39 65 36
'C10ORF79 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S4826.  Gene #458: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C10ORF79 MUTATED 0 10 17
C10ORF79 WILD-TYPE 42 163 130

Figure S1447.  Get High-res Image Gene #458: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C10ORF79 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.47

Table S4827.  Gene #458: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C10ORF79 MUTATED 9 7 4
C10ORF79 WILD-TYPE 53 66 71
'C10ORF79 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.93

Table S4828.  Gene #458: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C10ORF79 MUTATED 4 9 10
C10ORF79 WILD-TYPE 66 111 90
'C10ORF79 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S4829.  Gene #458: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C10ORF79 MUTATED 3 1 2 3 1 8 1 1 3
C10ORF79 WILD-TYPE 38 25 28 26 38 61 19 13 19
'C10ORF79 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S4830.  Gene #458: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C10ORF79 MUTATED 7 5 7 8
C10ORF79 WILD-TYPE 93 67 65 113
'C10ORF79 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S4831.  Gene #458: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C10ORF79 MUTATED 4 7 8 4 4
C10ORF79 WILD-TYPE 55 68 66 115 34
'C10ORF79 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S4832.  Gene #458: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C10ORF79 MUTATED 5 6 5 2 7
C10ORF79 WILD-TYPE 46 70 56 69 88
'C10ORF79 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.73

Table S4833.  Gene #458: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C10ORF79 MUTATED 7 6 0 1 3 2 1 3 2
C10ORF79 WILD-TYPE 62 42 39 15 50 18 20 35 48
'C10ORF79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S4834.  Gene #458: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C10ORF79 MUTATED 1 2 3 0 2 0
C10ORF79 WILD-TYPE 12 14 11 11 9 9
'C10ORF79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S4835.  Gene #458: 'C10ORF79 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C10ORF79 MUTATED 0 1 0 2 2 1 2 0 0
C10ORF79 WILD-TYPE 11 6 7 7 6 6 9 9 5
'DENND4A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00552 (Fisher's exact test), Q value = 0.07

Table S4836.  Gene #459: 'DENND4A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DENND4A MUTATED 5 0 0 3 0
DENND4A WILD-TYPE 27 18 46 24 23

Figure S1448.  Get High-res Image Gene #459: 'DENND4A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DENND4A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S4837.  Gene #459: 'DENND4A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DENND4A MUTATED 6 1 1
DENND4A WILD-TYPE 37 66 35

Figure S1449.  Get High-res Image Gene #459: 'DENND4A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DENND4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.012

Table S4838.  Gene #459: 'DENND4A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DENND4A MUTATED 1 3 18
DENND4A WILD-TYPE 41 170 129

Figure S1450.  Get High-res Image Gene #459: 'DENND4A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DENND4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S4839.  Gene #459: 'DENND4A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DENND4A MUTATED 4 3 7
DENND4A WILD-TYPE 58 70 68
'DENND4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 0.29

Table S4840.  Gene #459: 'DENND4A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DENND4A MUTATED 1 8 10
DENND4A WILD-TYPE 69 112 90
'DENND4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.61

Table S4841.  Gene #459: 'DENND4A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DENND4A MUTATED 1 2 1 3 3 9 0 0 0
DENND4A WILD-TYPE 40 24 29 26 36 60 20 14 22
'DENND4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0863 (Fisher's exact test), Q value = 0.32

Table S4842.  Gene #459: 'DENND4A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DENND4A MUTATED 2 8 4 8
DENND4A WILD-TYPE 98 64 68 113
'DENND4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0904 (Fisher's exact test), Q value = 0.33

Table S4843.  Gene #459: 'DENND4A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DENND4A MUTATED 3 4 7 3 5
DENND4A WILD-TYPE 56 71 67 116 33
'DENND4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S4844.  Gene #459: 'DENND4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DENND4A MUTATED 2 8 3 1 7
DENND4A WILD-TYPE 49 68 58 70 88
'DENND4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S4845.  Gene #459: 'DENND4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DENND4A MUTATED 5 2 1 4 2 1 1 4 1
DENND4A WILD-TYPE 64 46 38 12 51 19 20 34 49
'DENND4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S4846.  Gene #459: 'DENND4A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DENND4A MUTATED 0 2 1 1 1 0
DENND4A WILD-TYPE 13 14 13 10 10 9
'DENND4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 0.91

Table S4847.  Gene #459: 'DENND4A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DENND4A MUTATED 2 1 1 1 0 0 0 0 0
DENND4A WILD-TYPE 9 6 6 8 8 7 11 9 5
'RBL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00601 (Fisher's exact test), Q value = 0.073

Table S4848.  Gene #460: 'RBL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RBL2 MUTATED 5 0 0 3 0
RBL2 WILD-TYPE 27 18 46 24 23

Figure S1451.  Get High-res Image Gene #460: 'RBL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RBL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.11

Table S4849.  Gene #460: 'RBL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RBL2 MUTATED 6 2 0
RBL2 WILD-TYPE 37 65 36

Figure S1452.  Get High-res Image Gene #460: 'RBL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RBL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00257 (Fisher's exact test), Q value = 0.043

Table S4850.  Gene #460: 'RBL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RBL2 MUTATED 3 3 15
RBL2 WILD-TYPE 39 170 132

Figure S1453.  Get High-res Image Gene #460: 'RBL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.26

Table S4851.  Gene #460: 'RBL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RBL2 MUTATED 4 1 8
RBL2 WILD-TYPE 58 72 67
'RBL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.98

Table S4852.  Gene #460: 'RBL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RBL2 MUTATED 3 8 8
RBL2 WILD-TYPE 67 112 92
'RBL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S4853.  Gene #460: 'RBL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RBL2 MUTATED 3 0 2 4 3 6 0 0 1
RBL2 WILD-TYPE 38 26 28 25 36 63 20 14 21
'RBL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 0.25

Table S4854.  Gene #460: 'RBL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RBL2 MUTATED 1 4 7 8
RBL2 WILD-TYPE 99 68 65 113
'RBL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00088 (Fisher's exact test), Q value = 0.023

Table S4855.  Gene #460: 'RBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RBL2 MUTATED 3 3 6 1 7
RBL2 WILD-TYPE 56 72 68 118 31

Figure S1454.  Get High-res Image Gene #460: 'RBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S4856.  Gene #460: 'RBL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RBL2 MUTATED 3 5 3 1 8
RBL2 WILD-TYPE 48 71 58 70 87
'RBL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S4857.  Gene #460: 'RBL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RBL2 MUTATED 2 6 0 1 3 1 0 5 2
RBL2 WILD-TYPE 67 42 39 15 50 19 21 33 48
'RBL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S4858.  Gene #460: 'RBL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RBL2 MUTATED 0 1 1 0 1 0
RBL2 WILD-TYPE 13 15 13 11 10 9
'RBL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.94

Table S4859.  Gene #460: 'RBL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RBL2 MUTATED 1 0 0 0 0 0 2 0 0
RBL2 WILD-TYPE 10 7 7 9 8 7 9 9 5
'DCAF6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 0.17

Table S4860.  Gene #461: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DCAF6 MUTATED 4 0 0 2 0
DCAF6 WILD-TYPE 28 18 46 25 23

Figure S1455.  Get High-res Image Gene #461: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DCAF6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S4861.  Gene #461: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DCAF6 MUTATED 4 1 1
DCAF6 WILD-TYPE 39 66 35
'DCAF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00245 (Fisher's exact test), Q value = 0.042

Table S4862.  Gene #461: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DCAF6 MUTATED 2 1 11
DCAF6 WILD-TYPE 40 172 136

Figure S1456.  Get High-res Image Gene #461: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DCAF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00878 (Fisher's exact test), Q value = 0.088

Table S4863.  Gene #461: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DCAF6 MUTATED 2 0 7
DCAF6 WILD-TYPE 60 73 68

Figure S1457.  Get High-res Image Gene #461: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DCAF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.24

Table S4864.  Gene #461: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DCAF6 MUTATED 0 5 7
DCAF6 WILD-TYPE 70 115 93
'DCAF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.61

Table S4865.  Gene #461: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DCAF6 MUTATED 1 1 1 2 0 4 3 0 0
DCAF6 WILD-TYPE 40 25 29 27 39 65 17 14 22
'DCAF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S4866.  Gene #461: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DCAF6 MUTATED 1 5 3 6
DCAF6 WILD-TYPE 99 67 69 115
'DCAF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.095

Table S4867.  Gene #461: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DCAF6 MUTATED 1 1 7 2 4
DCAF6 WILD-TYPE 58 74 67 117 34

Figure S1458.  Get High-res Image Gene #461: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DCAF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S4868.  Gene #461: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DCAF6 MUTATED 0 6 2 2 4
DCAF6 WILD-TYPE 51 70 59 69 91
'DCAF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0631 (Fisher's exact test), Q value = 0.27

Table S4869.  Gene #461: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DCAF6 MUTATED 3 2 0 3 2 1 0 3 0
DCAF6 WILD-TYPE 66 46 39 13 51 19 21 35 50
'DCAF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S4870.  Gene #461: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DCAF6 MUTATED 0 0 1 0 2 0
DCAF6 WILD-TYPE 13 16 13 11 9 9
'DCAF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4871.  Gene #461: 'DCAF6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DCAF6 MUTATED 1 0 0 1 0 0 1 0 0
DCAF6 WILD-TYPE 10 7 7 8 8 7 10 9 5
'HIST1H1E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S4872.  Gene #462: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HIST1H1E MUTATED 1 1 4
HIST1H1E WILD-TYPE 41 172 143
'HIST1H1E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.18

Table S4873.  Gene #462: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HIST1H1E MUTATED 1 0 5
HIST1H1E WILD-TYPE 61 73 70

Figure S1459.  Get High-res Image Gene #462: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HIST1H1E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S4874.  Gene #462: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HIST1H1E MUTATED 0 4 2
HIST1H1E WILD-TYPE 70 116 98
'HIST1H1E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0476 (Fisher's exact test), Q value = 0.23

Table S4875.  Gene #462: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HIST1H1E MUTATED 2 1 0 3 0 0 0 0 0
HIST1H1E WILD-TYPE 39 25 30 26 39 69 20 14 22

Figure S1460.  Get High-res Image Gene #462: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'HIST1H1E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00507 (Fisher's exact test), Q value = 0.067

Table S4876.  Gene #462: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HIST1H1E MUTATED 0 4 2 0
HIST1H1E WILD-TYPE 100 68 70 121

Figure S1461.  Get High-res Image Gene #462: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HIST1H1E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S4877.  Gene #462: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HIST1H1E MUTATED 2 0 3 1 0
HIST1H1E WILD-TYPE 57 75 71 118 38
'HIST1H1E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S4878.  Gene #462: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HIST1H1E MUTATED 1 3 1 0 1
HIST1H1E WILD-TYPE 50 73 60 71 94
'HIST1H1E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S4879.  Gene #462: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HIST1H1E MUTATED 1 3 0 1 0 0 0 1 0
HIST1H1E WILD-TYPE 68 45 39 15 53 20 21 37 50
'ADK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S4880.  Gene #463: 'ADK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ADK MUTATED 1 1 5
ADK WILD-TYPE 41 172 142
'ADK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S4881.  Gene #463: 'ADK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ADK MUTATED 2 0 4
ADK WILD-TYPE 60 73 71
'ADK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S4882.  Gene #463: 'ADK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ADK MUTATED 1 3 3
ADK WILD-TYPE 69 117 97
'ADK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S4883.  Gene #463: 'ADK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ADK MUTATED 0 0 1 1 0 2 2 1 0
ADK WILD-TYPE 41 26 29 28 39 67 18 13 22
'ADK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00826 (Fisher's exact test), Q value = 0.085

Table S4884.  Gene #463: 'ADK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ADK MUTATED 0 5 1 1
ADK WILD-TYPE 100 67 71 120

Figure S1462.  Get High-res Image Gene #463: 'ADK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ADK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S4885.  Gene #463: 'ADK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ADK MUTATED 1 2 3 1 0
ADK WILD-TYPE 58 73 71 118 38
'ADK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.18

Table S4886.  Gene #463: 'ADK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ADK MUTATED 0 5 0 0 2
ADK WILD-TYPE 51 71 61 71 93

Figure S1463.  Get High-res Image Gene #463: 'ADK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ADK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S4887.  Gene #463: 'ADK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ADK MUTATED 2 1 0 1 1 1 0 0 1
ADK WILD-TYPE 67 47 39 15 52 19 21 38 49
'RPA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S4888.  Gene #464: 'RPA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RPA3 MUTATED 0 3 1
RPA3 WILD-TYPE 42 170 146
'RPA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S4889.  Gene #464: 'RPA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RPA3 MUTATED 1 3 0
RPA3 WILD-TYPE 61 70 75
'RPA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0865 (Fisher's exact test), Q value = 0.32

Table S4890.  Gene #464: 'RPA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RPA3 MUTATED 0 4 0
RPA3 WILD-TYPE 70 116 100
'RPA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.028 (Fisher's exact test), Q value = 0.18

Table S4891.  Gene #464: 'RPA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RPA3 MUTATED 0 0 0 0 0 1 0 2 1
RPA3 WILD-TYPE 41 26 30 29 39 68 20 12 21

Figure S1464.  Get High-res Image Gene #464: 'RPA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'RPA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.76

Table S4892.  Gene #464: 'RPA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RPA3 MUTATED 2 1 1 0
RPA3 WILD-TYPE 98 71 71 121
'RPA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.54

Table S4893.  Gene #464: 'RPA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RPA3 MUTATED 2 1 1 0 0
RPA3 WILD-TYPE 57 74 73 119 38
'RPA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S4894.  Gene #464: 'RPA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RPA3 MUTATED 1 1 0 2 0
RPA3 WILD-TYPE 50 75 61 69 95
'RPA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S4895.  Gene #464: 'RPA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RPA3 MUTATED 2 0 0 1 1 0 0 0 0
RPA3 WILD-TYPE 67 48 39 15 52 20 21 38 50
'RPA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S4896.  Gene #464: 'RPA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RPA3 MUTATED 0 0 0 1 1 1
RPA3 WILD-TYPE 13 16 14 10 10 8
'RPA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S4897.  Gene #464: 'RPA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RPA3 MUTATED 0 0 0 1 0 0 0 2 0
RPA3 WILD-TYPE 11 7 7 8 8 7 11 7 5
'NFATC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S4898.  Gene #465: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NFATC3 MUTATED 1 4 7
NFATC3 WILD-TYPE 41 169 140
'NFATC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S4899.  Gene #465: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NFATC3 MUTATED 2 3 4
NFATC3 WILD-TYPE 60 70 71
'NFATC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S4900.  Gene #465: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NFATC3 MUTATED 2 4 5
NFATC3 WILD-TYPE 68 116 95
'NFATC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S4901.  Gene #465: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NFATC3 MUTATED 4 1 2 1 0 2 0 1 0
NFATC3 WILD-TYPE 37 25 28 28 39 67 20 13 22
'NFATC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S4902.  Gene #465: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NFATC3 MUTATED 4 3 2 3
NFATC3 WILD-TYPE 96 69 70 118
'NFATC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S4903.  Gene #465: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NFATC3 MUTATED 3 2 3 3 1
NFATC3 WILD-TYPE 56 73 71 116 37
'NFATC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S4904.  Gene #465: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NFATC3 MUTATED 2 2 4 0 4
NFATC3 WILD-TYPE 49 74 57 71 91
'NFATC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.34

Table S4905.  Gene #465: 'NFATC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NFATC3 MUTATED 1 3 1 2 0 2 1 1 1
NFATC3 WILD-TYPE 68 45 38 14 53 18 20 37 49
'C9ORF84 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.18

Table S4906.  Gene #466: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C9ORF84 MUTATED 4 0 0 1 0
C9ORF84 WILD-TYPE 28 18 46 26 23

Figure S1465.  Get High-res Image Gene #466: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C9ORF84 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S4907.  Gene #466: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C9ORF84 MUTATED 3 1 1
C9ORF84 WILD-TYPE 40 66 35
'C9ORF84 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00677 (Fisher's exact test), Q value = 0.077

Table S4908.  Gene #466: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C9ORF84 MUTATED 1 4 15
C9ORF84 WILD-TYPE 41 169 132

Figure S1466.  Get High-res Image Gene #466: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C9ORF84 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S4909.  Gene #466: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C9ORF84 MUTATED 7 3 5
C9ORF84 WILD-TYPE 55 70 70
'C9ORF84 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S4910.  Gene #466: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C9ORF84 MUTATED 5 5 9
C9ORF84 WILD-TYPE 65 115 91
'C9ORF84 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.99

Table S4911.  Gene #466: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C9ORF84 MUTATED 4 3 1 0 3 5 1 0 2
C9ORF84 WILD-TYPE 37 23 29 29 36 64 19 14 20
'C9ORF84 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.093 (Fisher's exact test), Q value = 0.33

Table S4912.  Gene #466: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C9ORF84 MUTATED 2 6 7 5
C9ORF84 WILD-TYPE 98 66 65 116
'C9ORF84 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S4913.  Gene #466: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C9ORF84 MUTATED 5 1 8 3 3
C9ORF84 WILD-TYPE 54 74 66 116 35

Figure S1467.  Get High-res Image Gene #466: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C9ORF84 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0673 (Fisher's exact test), Q value = 0.28

Table S4914.  Gene #466: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C9ORF84 MUTATED 1 9 4 1 5
C9ORF84 WILD-TYPE 50 67 57 70 90
'C9ORF84 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S4915.  Gene #466: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C9ORF84 MUTATED 6 5 0 1 3 2 0 3 0
C9ORF84 WILD-TYPE 63 43 39 15 50 18 21 35 50
'C9ORF84 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.17

Table S4916.  Gene #466: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C9ORF84 MUTATED 0 3 0 0 3 0
C9ORF84 WILD-TYPE 13 13 14 11 8 9

Figure S1468.  Get High-res Image Gene #466: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'C9ORF84 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S4917.  Gene #466: 'C9ORF84 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C9ORF84 MUTATED 1 1 0 1 0 1 2 0 0
C9ORF84 WILD-TYPE 10 6 7 8 8 6 9 9 5
'IKZF4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S4918.  Gene #467: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IKZF4 MUTATED 1 6 6
IKZF4 WILD-TYPE 41 167 141
'IKZF4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S4919.  Gene #467: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IKZF4 MUTATED 4 5 3
IKZF4 WILD-TYPE 58 68 72
'IKZF4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S4920.  Gene #467: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IKZF4 MUTATED 2 6 4
IKZF4 WILD-TYPE 68 114 96
'IKZF4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.65

Table S4921.  Gene #467: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IKZF4 MUTATED 1 2 1 2 0 2 1 2 1
IKZF4 WILD-TYPE 40 24 29 27 39 67 19 12 21
'IKZF4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S4922.  Gene #467: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IKZF4 MUTATED 4 5 3 1
IKZF4 WILD-TYPE 96 67 69 120
'IKZF4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0236 (Fisher's exact test), Q value = 0.16

Table S4923.  Gene #467: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IKZF4 MUTATED 3 4 5 0 1
IKZF4 WILD-TYPE 56 71 69 119 37

Figure S1469.  Get High-res Image Gene #467: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IKZF4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S4924.  Gene #467: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IKZF4 MUTATED 1 7 3 1 1
IKZF4 WILD-TYPE 50 69 58 70 94

Figure S1470.  Get High-res Image Gene #467: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IKZF4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S4925.  Gene #467: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IKZF4 MUTATED 4 4 2 0 1 1 0 1 0
IKZF4 WILD-TYPE 65 44 37 16 52 19 21 37 50
'IKZF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S4926.  Gene #467: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IKZF4 MUTATED 2 2 1 1 1 0
IKZF4 WILD-TYPE 11 14 13 10 10 9
'IKZF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4927.  Gene #467: 'IKZF4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IKZF4 MUTATED 1 1 1 1 1 0 1 1 0
IKZF4 WILD-TYPE 10 6 6 8 7 7 10 8 5
'MAP7D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00534 (Fisher's exact test), Q value = 0.069

Table S4928.  Gene #468: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAP7D1 MUTATED 1 2 12
MAP7D1 WILD-TYPE 41 171 135

Figure S1471.  Get High-res Image Gene #468: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP7D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00625 (Fisher's exact test), Q value = 0.074

Table S4929.  Gene #468: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAP7D1 MUTATED 7 0 7
MAP7D1 WILD-TYPE 55 73 68

Figure S1472.  Get High-res Image Gene #468: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MAP7D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S4930.  Gene #468: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAP7D1 MUTATED 1 5 8
MAP7D1 WILD-TYPE 69 115 92
'MAP7D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0869 (Fisher's exact test), Q value = 0.32

Table S4931.  Gene #468: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAP7D1 MUTATED 2 0 0 2 0 6 3 1 0
MAP7D1 WILD-TYPE 39 26 30 27 39 63 17 13 22
'MAP7D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.018

Table S4932.  Gene #468: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAP7D1 MUTATED 1 5 8 1
MAP7D1 WILD-TYPE 99 67 64 120

Figure S1473.  Get High-res Image Gene #468: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAP7D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S4933.  Gene #468: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAP7D1 MUTATED 2 1 11 0 1
MAP7D1 WILD-TYPE 57 74 63 119 37

Figure S1474.  Get High-res Image Gene #468: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S4934.  Gene #468: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAP7D1 MUTATED 1 11 1 1 0
MAP7D1 WILD-TYPE 50 65 60 70 95

Figure S1475.  Get High-res Image Gene #468: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0081

Table S4935.  Gene #468: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAP7D1 MUTATED 4 7 0 3 0 0 0 0 0
MAP7D1 WILD-TYPE 65 41 39 13 53 20 21 38 50

Figure S1476.  Get High-res Image Gene #468: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S4936.  Gene #468: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAP7D1 MUTATED 1 2 1 0 2 0
MAP7D1 WILD-TYPE 12 14 13 11 9 9
'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S4937.  Gene #468: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAP7D1 MUTATED 0 0 1 1 0 1 2 1 0
MAP7D1 WILD-TYPE 11 7 6 8 8 6 9 8 5
'LRRC39 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0863 (Fisher's exact test), Q value = 0.32

Table S4938.  Gene #469: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LRRC39 MUTATED 1 1 6
LRRC39 WILD-TYPE 41 172 141
'LRRC39 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S4939.  Gene #469: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LRRC39 MUTATED 4 1 1
LRRC39 WILD-TYPE 58 72 74
'LRRC39 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S4940.  Gene #469: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LRRC39 MUTATED 0 2 5
LRRC39 WILD-TYPE 70 118 95
'LRRC39 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.93

Table S4941.  Gene #469: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LRRC39 MUTATED 1 0 0 0 1 4 0 1 0
LRRC39 WILD-TYPE 40 26 30 29 38 65 20 13 22
'LRRC39 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S4942.  Gene #469: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LRRC39 MUTATED 1 2 3 2
LRRC39 WILD-TYPE 99 70 69 119
'LRRC39 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00896 (Fisher's exact test), Q value = 0.089

Table S4943.  Gene #469: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LRRC39 MUTATED 2 0 4 0 2
LRRC39 WILD-TYPE 57 75 70 119 36

Figure S1477.  Get High-res Image Gene #469: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LRRC39 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S4944.  Gene #469: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LRRC39 MUTATED 0 4 2 1 1
LRRC39 WILD-TYPE 51 72 59 70 94
'LRRC39 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.36

Table S4945.  Gene #469: 'LRRC39 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LRRC39 MUTATED 1 3 0 2 1 0 0 1 0
LRRC39 WILD-TYPE 68 45 39 14 52 20 21 37 50
'RING1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00804 (Fisher's exact test), Q value = 0.084

Table S4946.  Gene #470: 'RING1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RING1 MUTATED 0 1 9
RING1 WILD-TYPE 42 172 138

Figure S1478.  Get High-res Image Gene #470: 'RING1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RING1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0544 (Fisher's exact test), Q value = 0.25

Table S4947.  Gene #470: 'RING1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RING1 MUTATED 4 0 5
RING1 WILD-TYPE 58 73 70
'RING1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S4948.  Gene #470: 'RING1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RING1 MUTATED 2 2 5
RING1 WILD-TYPE 68 118 95
'RING1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S4949.  Gene #470: 'RING1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RING1 MUTATED 0 0 0 2 1 5 0 1 0
RING1 WILD-TYPE 41 26 30 27 38 64 20 13 22
'RING1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00289 (Fisher's exact test), Q value = 0.046

Table S4950.  Gene #470: 'RING1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RING1 MUTATED 1 7 1 1
RING1 WILD-TYPE 99 65 71 120

Figure S1479.  Get High-res Image Gene #470: 'RING1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RING1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00103 (Fisher's exact test), Q value = 0.025

Table S4951.  Gene #470: 'RING1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RING1 MUTATED 0 1 8 1 0
RING1 WILD-TYPE 59 74 66 118 38

Figure S1480.  Get High-res Image Gene #470: 'RING1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RING1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S4952.  Gene #470: 'RING1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RING1 MUTATED 1 5 2 1 1
RING1 WILD-TYPE 50 71 59 70 94
'RING1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.082 (Fisher's exact test), Q value = 0.31

Table S4953.  Gene #470: 'RING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RING1 MUTATED 3 1 0 3 2 0 0 0 1
RING1 WILD-TYPE 66 47 39 13 51 20 21 38 49
'VCX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S4954.  Gene #471: 'VCX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
VCX2 MUTATED 0 5 2
VCX2 WILD-TYPE 42 168 145
'VCX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S4955.  Gene #471: 'VCX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
VCX2 MUTATED 2 4 1
VCX2 WILD-TYPE 60 69 74
'VCX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S4956.  Gene #471: 'VCX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
VCX2 MUTATED 1 3 3
VCX2 WILD-TYPE 69 117 97
'VCX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S4957.  Gene #471: 'VCX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
VCX2 MUTATED 1 1 0 2 0 2 0 1 0
VCX2 WILD-TYPE 40 25 30 27 39 67 20 13 22
'VCX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S4958.  Gene #471: 'VCX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
VCX2 MUTATED 4 1 2 0
VCX2 WILD-TYPE 96 71 70 121
'VCX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0511 (Fisher's exact test), Q value = 0.24

Table S4959.  Gene #471: 'VCX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
VCX2 MUTATED 3 3 1 0 0
VCX2 WILD-TYPE 56 72 73 119 38
'VCX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S4960.  Gene #471: 'VCX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
VCX2 MUTATED 1 2 3 1 0
VCX2 WILD-TYPE 50 74 58 70 95
'VCX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S4961.  Gene #471: 'VCX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
VCX2 MUTATED 3 2 1 0 0 1 0 0 0
VCX2 WILD-TYPE 66 46 38 16 53 19 21 38 50
'VCX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.89

Table S4962.  Gene #471: 'VCX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
VCX2 MUTATED 0 1 0 1 0 1
VCX2 WILD-TYPE 13 15 14 10 11 8
'VCX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S4963.  Gene #471: 'VCX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
VCX2 MUTATED 0 1 0 0 0 0 1 1 0
VCX2 WILD-TYPE 11 6 7 9 8 7 10 8 5
'N4BP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 0.26

Table S4964.  Gene #472: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
N4BP2 MUTATED 4 0 0 1 1
N4BP2 WILD-TYPE 28 18 46 26 22
'N4BP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S4965.  Gene #472: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
N4BP2 MUTATED 3 1 2
N4BP2 WILD-TYPE 40 66 34
'N4BP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00708 (Fisher's exact test), Q value = 0.079

Table S4966.  Gene #472: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
N4BP2 MUTATED 2 5 17
N4BP2 WILD-TYPE 40 168 130

Figure S1481.  Get High-res Image Gene #472: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'N4BP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S4967.  Gene #472: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
N4BP2 MUTATED 6 3 10
N4BP2 WILD-TYPE 56 70 65
'N4BP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S4968.  Gene #472: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
N4BP2 MUTATED 2 10 10
N4BP2 WILD-TYPE 68 110 90
'N4BP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S4969.  Gene #472: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
N4BP2 MUTATED 4 1 2 6 1 6 1 1 0
N4BP2 WILD-TYPE 37 25 28 23 38 63 19 13 22
'N4BP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.8

Table S4970.  Gene #472: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
N4BP2 MUTATED 5 6 7 6
N4BP2 WILD-TYPE 95 66 65 115
'N4BP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.049 (Fisher's exact test), Q value = 0.24

Table S4971.  Gene #472: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
N4BP2 MUTATED 2 7 9 3 3
N4BP2 WILD-TYPE 57 68 65 116 35

Figure S1482.  Get High-res Image Gene #472: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'N4BP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S4972.  Gene #472: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
N4BP2 MUTATED 4 9 3 3 4
N4BP2 WILD-TYPE 47 67 58 68 91
'N4BP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.55

Table S4973.  Gene #472: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
N4BP2 MUTATED 5 6 3 3 2 1 0 2 1
N4BP2 WILD-TYPE 64 42 36 13 51 19 21 36 49
'N4BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S4974.  Gene #472: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
N4BP2 MUTATED 1 2 0 0 3 1
N4BP2 WILD-TYPE 12 14 14 11 8 8
'N4BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.62

Table S4975.  Gene #472: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
N4BP2 MUTATED 0 1 0 1 0 1 3 0 1
N4BP2 WILD-TYPE 11 6 7 8 8 6 8 9 4
'NRK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00928 (Fisher's exact test), Q value = 0.091

Table S4976.  Gene #473: 'NRK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NRK MUTATED 5 0 0 2 0
NRK WILD-TYPE 27 18 46 25 23

Figure S1483.  Get High-res Image Gene #473: 'NRK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NRK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S4977.  Gene #473: 'NRK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NRK MUTATED 4 2 1
NRK WILD-TYPE 39 65 35
'NRK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S4978.  Gene #473: 'NRK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NRK MUTATED 4 5 14
NRK WILD-TYPE 38 168 133

Figure S1484.  Get High-res Image Gene #473: 'NRK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NRK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S4979.  Gene #473: 'NRK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NRK MUTATED 4 4 8
NRK WILD-TYPE 58 69 67
'NRK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S4980.  Gene #473: 'NRK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NRK MUTATED 0 9 7
NRK WILD-TYPE 70 111 93

Figure S1485.  Get High-res Image Gene #473: 'NRK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NRK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S4981.  Gene #473: 'NRK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NRK MUTATED 3 1 1 3 2 4 1 0 1
NRK WILD-TYPE 38 25 29 26 37 65 19 14 21
'NRK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S4982.  Gene #473: 'NRK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NRK MUTATED 4 8 5 6
NRK WILD-TYPE 96 64 67 115
'NRK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S4983.  Gene #473: 'NRK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NRK MUTATED 4 3 9 4 3
NRK WILD-TYPE 55 72 65 115 35
'NRK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.6

Table S4984.  Gene #473: 'NRK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NRK MUTATED 4 9 2 3 5
NRK WILD-TYPE 47 67 59 68 90
'NRK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0458 (Fisher's exact test), Q value = 0.23

Table S4985.  Gene #473: 'NRK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NRK MUTATED 4 4 1 4 6 1 1 2 0
NRK WILD-TYPE 65 44 38 12 47 19 20 36 50

Figure S1486.  Get High-res Image Gene #473: 'NRK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.069 (Fisher's exact test), Q value = 0.28

Table S4986.  Gene #473: 'NRK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NRK MUTATED 0 2 0 0 0 2
NRK WILD-TYPE 13 14 14 11 11 7
'NRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S4987.  Gene #473: 'NRK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NRK MUTATED 2 1 0 0 0 0 0 1 0
NRK WILD-TYPE 9 6 7 9 8 7 11 8 5
'PTPRK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00323 (Fisher's exact test), Q value = 0.05

Table S4988.  Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PTPRK MUTATED 7 1 0 1 1
PTPRK WILD-TYPE 25 17 46 26 22

Figure S1487.  Get High-res Image Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTPRK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S4989.  Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PTPRK MUTATED 9 0 1
PTPRK WILD-TYPE 34 67 35

Figure S1488.  Get High-res Image Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PTPRK MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S4990.  Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTPRK MUTATED 2 5 25
PTPRK WILD-TYPE 40 168 122

Figure S1489.  Get High-res Image Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPRK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.53

Table S4991.  Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTPRK MUTATED 8 4 10
PTPRK WILD-TYPE 54 69 65
'PTPRK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.26

Table S4992.  Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTPRK MUTATED 2 10 13
PTPRK WILD-TYPE 68 110 87
'PTPRK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S4993.  Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTPRK MUTATED 2 2 1 2 3 7 5 1 2
PTPRK WILD-TYPE 39 24 29 27 36 62 15 13 20
'PTPRK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S4994.  Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTPRK MUTATED 5 11 5 12
PTPRK WILD-TYPE 95 61 67 109
'PTPRK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S4995.  Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTPRK MUTATED 4 2 14 4 9
PTPRK WILD-TYPE 55 73 60 115 29

Figure S1490.  Get High-res Image Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPRK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 0.2

Table S4996.  Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTPRK MUTATED 1 12 5 3 11
PTPRK WILD-TYPE 50 64 56 68 84

Figure S1491.  Get High-res Image Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PTPRK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00084 (Fisher's exact test), Q value = 0.022

Table S4997.  Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTPRK MUTATED 5 7 0 5 3 2 1 8 1
PTPRK WILD-TYPE 64 41 39 11 50 18 20 30 49

Figure S1492.  Get High-res Image Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTPRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0822 (Fisher's exact test), Q value = 0.31

Table S4998.  Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PTPRK MUTATED 1 0 3 0 0 0
PTPRK WILD-TYPE 12 16 11 11 11 9
'PTPRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S4999.  Gene #474: 'PTPRK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PTPRK MUTATED 0 0 0 0 1 1 0 1 1
PTPRK WILD-TYPE 11 7 7 9 7 6 11 8 4
'HDAC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S5000.  Gene #475: 'HDAC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HDAC1 MUTATED 0 1 3
HDAC1 WILD-TYPE 42 172 144
'HDAC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S5001.  Gene #475: 'HDAC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HDAC1 MUTATED 0 0 3
HDAC1 WILD-TYPE 62 73 72
'HDAC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.79

Table S5002.  Gene #475: 'HDAC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HDAC1 MUTATED 1 1 3
HDAC1 WILD-TYPE 69 119 97
'HDAC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.57

Table S5003.  Gene #475: 'HDAC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HDAC1 MUTATED 0 0 1 0 0 2 2 0 0
HDAC1 WILD-TYPE 41 26 29 29 39 67 18 14 22
'HDAC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S5004.  Gene #475: 'HDAC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HDAC1 MUTATED 1 3 0 1
HDAC1 WILD-TYPE 99 69 72 120
'HDAC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0918 (Fisher's exact test), Q value = 0.33

Table S5005.  Gene #475: 'HDAC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HDAC1 MUTATED 0 3 1 0 1
HDAC1 WILD-TYPE 59 72 73 119 37
'HDAC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S5006.  Gene #475: 'HDAC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HDAC1 MUTATED 0 3 0 0 1
HDAC1 WILD-TYPE 51 73 61 71 94
'HDAC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S5007.  Gene #475: 'HDAC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HDAC1 MUTATED 1 0 0 1 2 0 0 0 0
HDAC1 WILD-TYPE 68 48 39 15 51 20 21 38 50
'E2F7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00259 (Fisher's exact test), Q value = 0.043

Table S5008.  Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
E2F7 MUTATED 6 0 0 2 0
E2F7 WILD-TYPE 26 18 46 25 23

Figure S1493.  Get High-res Image Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'E2F7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.13

Table S5009.  Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
E2F7 MUTATED 6 1 1
E2F7 WILD-TYPE 37 66 35

Figure S1494.  Get High-res Image Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'E2F7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00278 (Fisher's exact test), Q value = 0.045

Table S5010.  Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
E2F7 MUTATED 0 5 16
E2F7 WILD-TYPE 42 168 131

Figure S1495.  Get High-res Image Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'E2F7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S5011.  Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
E2F7 MUTATED 2 4 7
E2F7 WILD-TYPE 60 69 68
'E2F7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S5012.  Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
E2F7 MUTATED 3 5 6
E2F7 WILD-TYPE 67 115 94
'E2F7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S5013.  Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
E2F7 MUTATED 3 0 1 1 2 6 0 0 1
E2F7 WILD-TYPE 38 26 29 28 37 63 20 14 21
'E2F7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S5014.  Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
E2F7 MUTATED 4 4 5 8
E2F7 WILD-TYPE 96 68 67 113
'E2F7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00934 (Fisher's exact test), Q value = 0.091

Table S5015.  Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
E2F7 MUTATED 4 1 8 3 5
E2F7 WILD-TYPE 55 74 66 116 33

Figure S1496.  Get High-res Image Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'E2F7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.91

Table S5016.  Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
E2F7 MUTATED 3 7 3 2 5
E2F7 WILD-TYPE 48 69 58 69 90
'E2F7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.16

Table S5017.  Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
E2F7 MUTATED 2 5 0 3 4 2 1 3 0
E2F7 WILD-TYPE 67 43 39 13 49 18 20 35 50

Figure S1497.  Get High-res Image Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'E2F7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S5018.  Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
E2F7 MUTATED 0 1 1 0 1 0
E2F7 WILD-TYPE 13 15 13 11 10 9
'E2F7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S5019.  Gene #476: 'E2F7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
E2F7 MUTATED 0 0 0 0 1 0 2 0 0
E2F7 WILD-TYPE 11 7 7 9 7 7 9 9 5
'SLC11A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0549 (Fisher's exact test), Q value = 0.25

Table S5020.  Gene #477: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC11A2 MUTATED 3 0 0 0 0
SLC11A2 WILD-TYPE 29 18 46 27 23
'SLC11A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S5021.  Gene #477: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC11A2 MUTATED 2 0 1
SLC11A2 WILD-TYPE 41 67 35
'SLC11A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00241 (Fisher's exact test), Q value = 0.042

Table S5022.  Gene #477: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC11A2 MUTATED 0 0 8
SLC11A2 WILD-TYPE 42 173 139

Figure S1498.  Get High-res Image Gene #477: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC11A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S5023.  Gene #477: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC11A2 MUTATED 2 0 3
SLC11A2 WILD-TYPE 60 73 72
'SLC11A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S5024.  Gene #477: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC11A2 MUTATED 0 0 4
SLC11A2 WILD-TYPE 70 120 96

Figure S1499.  Get High-res Image Gene #477: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SLC11A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S5025.  Gene #477: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC11A2 MUTATED 0 0 0 0 0 4 0 0 0
SLC11A2 WILD-TYPE 41 26 30 29 39 65 20 14 22
'SLC11A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S5026.  Gene #477: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC11A2 MUTATED 0 2 3 3
SLC11A2 WILD-TYPE 100 70 69 118
'SLC11A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00856 (Fisher's exact test), Q value = 0.087

Table S5027.  Gene #477: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC11A2 MUTATED 0 0 5 1 2
SLC11A2 WILD-TYPE 59 75 69 118 36

Figure S1500.  Get High-res Image Gene #477: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC11A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S5028.  Gene #477: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC11A2 MUTATED 0 2 3 1 2
SLC11A2 WILD-TYPE 51 74 58 70 93
'SLC11A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S5029.  Gene #477: 'SLC11A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC11A2 MUTATED 1 2 0 1 2 0 1 1 0
SLC11A2 WILD-TYPE 68 46 39 15 51 20 20 37 50
'HIF3A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.076 (Fisher's exact test), Q value = 0.3

Table S5030.  Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HIF3A MUTATED 3 0 0 2 0
HIF3A WILD-TYPE 29 18 46 25 23
'HIF3A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0666 (Fisher's exact test), Q value = 0.28

Table S5031.  Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HIF3A MUTATED 4 1 0
HIF3A WILD-TYPE 39 66 36
'HIF3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00174 (Fisher's exact test), Q value = 0.035

Table S5032.  Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HIF3A MUTATED 0 2 13
HIF3A WILD-TYPE 42 171 134

Figure S1501.  Get High-res Image Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HIF3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0539 (Fisher's exact test), Q value = 0.25

Table S5033.  Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HIF3A MUTATED 4 0 5
HIF3A WILD-TYPE 58 73 70
'HIF3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S5034.  Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HIF3A MUTATED 1 5 6
HIF3A WILD-TYPE 69 115 94
'HIF3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S5035.  Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HIF3A MUTATED 0 1 2 3 0 5 1 0 0
HIF3A WILD-TYPE 41 25 28 26 39 64 19 14 22
'HIF3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.19

Table S5036.  Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HIF3A MUTATED 0 5 4 6
HIF3A WILD-TYPE 100 67 68 115

Figure S1502.  Get High-res Image Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HIF3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S5037.  Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HIF3A MUTATED 1 0 8 1 5
HIF3A WILD-TYPE 58 75 66 118 33

Figure S1503.  Get High-res Image Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HIF3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.2

Table S5038.  Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HIF3A MUTATED 1 7 1 0 5
HIF3A WILD-TYPE 50 69 60 71 90

Figure S1504.  Get High-res Image Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HIF3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0078 (Fisher's exact test), Q value = 0.083

Table S5039.  Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HIF3A MUTATED 1 3 0 3 1 2 2 2 0
HIF3A WILD-TYPE 68 45 39 13 52 18 19 36 50

Figure S1505.  Get High-res Image Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HIF3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.16

Table S5040.  Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HIF3A MUTATED 0 0 2 0 3 0
HIF3A WILD-TYPE 13 16 12 11 8 9

Figure S1506.  Get High-res Image Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'HIF3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S5041.  Gene #478: 'HIF3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HIF3A MUTATED 0 0 0 2 1 0 2 0 0
HIF3A WILD-TYPE 11 7 7 7 7 7 9 9 5
'NOX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.19

Table S5042.  Gene #479: 'NOX5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NOX5 MUTATED 0 0 5
NOX5 WILD-TYPE 42 173 142

Figure S1507.  Get High-res Image Gene #479: 'NOX5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NOX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S5043.  Gene #479: 'NOX5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NOX5 MUTATED 3 0 1
NOX5 WILD-TYPE 59 73 74
'NOX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S5044.  Gene #479: 'NOX5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NOX5 MUTATED 1 0 3
NOX5 WILD-TYPE 69 120 97
'NOX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5045.  Gene #479: 'NOX5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NOX5 MUTATED 1 0 0 0 1 2 0 0 0
NOX5 WILD-TYPE 40 26 30 29 38 67 20 14 22
'NOX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S5046.  Gene #479: 'NOX5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NOX5 MUTATED 0 1 3 1
NOX5 WILD-TYPE 100 71 69 120
'NOX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0566 (Fisher's exact test), Q value = 0.25

Table S5047.  Gene #479: 'NOX5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NOX5 MUTATED 1 0 3 0 1
NOX5 WILD-TYPE 58 75 71 119 37
'NOX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.73

Table S5048.  Gene #479: 'NOX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NOX5 MUTATED 0 2 2 0 1
NOX5 WILD-TYPE 51 74 59 71 94
'NOX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.96

Table S5049.  Gene #479: 'NOX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NOX5 MUTATED 2 2 0 0 0 0 0 1 0
NOX5 WILD-TYPE 67 46 39 16 53 20 21 37 50
'WWTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S5050.  Gene #480: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WWTR1 MUTATED 0 2 4
WWTR1 WILD-TYPE 42 171 143
'WWTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.2

Table S5051.  Gene #480: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WWTR1 MUTATED 0 0 4
WWTR1 WILD-TYPE 62 73 71

Figure S1508.  Get High-res Image Gene #480: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'WWTR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S5052.  Gene #480: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WWTR1 MUTATED 0 3 2
WWTR1 WILD-TYPE 70 117 98
'WWTR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.99

Table S5053.  Gene #480: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WWTR1 MUTATED 1 0 0 0 0 2 1 0 1
WWTR1 WILD-TYPE 40 26 30 29 39 67 19 14 21
'WWTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S5054.  Gene #480: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WWTR1 MUTATED 1 2 2 1
WWTR1 WILD-TYPE 99 70 70 120
'WWTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S5055.  Gene #480: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WWTR1 MUTATED 1 1 2 1 1
WWTR1 WILD-TYPE 58 74 72 118 37
'WWTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.75

Table S5056.  Gene #480: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WWTR1 MUTATED 0 3 1 0 2
WWTR1 WILD-TYPE 51 73 60 71 93
'WWTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.95

Table S5057.  Gene #480: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WWTR1 MUTATED 1 1 0 0 3 0 0 1 0
WWTR1 WILD-TYPE 68 47 39 16 50 20 21 37 50
'HGS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S5058.  Gene #481: 'HGS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HGS MUTATED 1 2 7
HGS WILD-TYPE 41 171 140
'HGS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S5059.  Gene #481: 'HGS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HGS MUTATED 1 2 7
HGS WILD-TYPE 61 71 68
'HGS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.89

Table S5060.  Gene #481: 'HGS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HGS MUTATED 1 5 3
HGS WILD-TYPE 69 115 97
'HGS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S5061.  Gene #481: 'HGS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HGS MUTATED 0 0 0 2 0 3 2 0 2
HGS WILD-TYPE 41 26 30 27 39 66 18 14 20
'HGS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00147 (Fisher's exact test), Q value = 0.032

Table S5062.  Gene #481: 'HGS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HGS MUTATED 1 6 3 0
HGS WILD-TYPE 99 66 69 121

Figure S1509.  Get High-res Image Gene #481: 'HGS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HGS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.01

Table S5063.  Gene #481: 'HGS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HGS MUTATED 1 1 8 0 0
HGS WILD-TYPE 58 74 66 119 38

Figure S1510.  Get High-res Image Gene #481: 'HGS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HGS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S5064.  Gene #481: 'HGS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HGS MUTATED 2 8 0 0 0
HGS WILD-TYPE 49 68 61 71 95

Figure S1511.  Get High-res Image Gene #481: 'HGS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HGS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00417 (Fisher's exact test), Q value = 0.058

Table S5065.  Gene #481: 'HGS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HGS MUTATED 1 2 1 4 2 0 0 0 0
HGS WILD-TYPE 68 46 38 12 51 20 21 38 50

Figure S1512.  Get High-res Image Gene #481: 'HGS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0066 (Fisher's exact test), Q value = 0.076

Table S5066.  Gene #481: 'HGS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HGS MUTATED 0 0 0 0 3 0
HGS WILD-TYPE 13 16 14 11 8 9

Figure S1513.  Get High-res Image Gene #481: 'HGS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'HGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S5067.  Gene #481: 'HGS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HGS MUTATED 0 0 0 1 1 0 1 0 0
HGS WILD-TYPE 11 7 7 8 7 7 10 9 5
'NLK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S5068.  Gene #482: 'NLK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NLK MUTATED 0 5 6
NLK WILD-TYPE 42 168 141
'NLK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S5069.  Gene #482: 'NLK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NLK MUTATED 4 1 5
NLK WILD-TYPE 58 72 70
'NLK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.16

Table S5070.  Gene #482: 'NLK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NLK MUTATED 0 2 7
NLK WILD-TYPE 70 118 93

Figure S1514.  Get High-res Image Gene #482: 'NLK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NLK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0839 (Fisher's exact test), Q value = 0.31

Table S5071.  Gene #482: 'NLK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NLK MUTATED 0 1 0 0 0 5 2 1 0
NLK WILD-TYPE 41 25 30 29 39 64 18 13 22
'NLK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.3

Table S5072.  Gene #482: 'NLK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NLK MUTATED 2 5 3 1
NLK WILD-TYPE 98 67 69 120
'NLK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S5073.  Gene #482: 'NLK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NLK MUTATED 2 3 5 1 0
NLK WILD-TYPE 57 72 69 118 38
'NLK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.21

Table S5074.  Gene #482: 'NLK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NLK MUTATED 2 6 2 0 1
NLK WILD-TYPE 49 70 59 71 94

Figure S1515.  Get High-res Image Gene #482: 'NLK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NLK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0201 (Fisher's exact test), Q value = 0.14

Table S5075.  Gene #482: 'NLK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NLK MUTATED 1 4 0 3 2 0 0 0 1
NLK WILD-TYPE 68 44 39 13 51 20 21 38 49

Figure S1516.  Get High-res Image Gene #482: 'NLK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATP8B1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0421 (Fisher's exact test), Q value = 0.22

Table S5076.  Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATP8B1 MUTATED 4 1 0 1 0
ATP8B1 WILD-TYPE 28 17 46 26 23

Figure S1517.  Get High-res Image Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATP8B1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.88

Table S5077.  Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATP8B1 MUTATED 3 2 1
ATP8B1 WILD-TYPE 40 65 35
'ATP8B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00442 (Fisher's exact test), Q value = 0.061

Table S5078.  Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATP8B1 MUTATED 3 4 16
ATP8B1 WILD-TYPE 39 169 131

Figure S1518.  Get High-res Image Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP8B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0422 (Fisher's exact test), Q value = 0.22

Table S5079.  Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATP8B1 MUTATED 9 2 6
ATP8B1 WILD-TYPE 53 71 69

Figure S1519.  Get High-res Image Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ATP8B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00382 (Fisher's exact test), Q value = 0.055

Table S5080.  Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATP8B1 MUTATED 2 4 14
ATP8B1 WILD-TYPE 68 116 86

Figure S1520.  Get High-res Image Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ATP8B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S5081.  Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATP8B1 MUTATED 4 0 1 2 0 9 2 0 2
ATP8B1 WILD-TYPE 37 26 29 27 39 60 18 14 20
'ATP8B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.15

Table S5082.  Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATP8B1 MUTATED 2 4 10 7
ATP8B1 WILD-TYPE 98 68 62 114

Figure S1521.  Get High-res Image Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ATP8B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S5083.  Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATP8B1 MUTATED 5 4 7 5 2
ATP8B1 WILD-TYPE 54 71 67 114 36
'ATP8B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0449 (Fisher's exact test), Q value = 0.23

Table S5084.  Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATP8B1 MUTATED 1 11 3 3 4
ATP8B1 WILD-TYPE 50 65 58 68 91

Figure S1522.  Get High-res Image Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ATP8B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S5085.  Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATP8B1 MUTATED 4 8 0 1 5 1 2 1 0
ATP8B1 WILD-TYPE 65 40 39 15 48 19 19 37 50

Figure S1523.  Get High-res Image Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATP8B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S5086.  Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ATP8B1 MUTATED 0 2 2 0 3 0
ATP8B1 WILD-TYPE 13 14 12 11 8 9
'ATP8B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.49

Table S5087.  Gene #483: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ATP8B1 MUTATED 0 0 0 1 1 2 3 0 0
ATP8B1 WILD-TYPE 11 7 7 8 7 5 8 9 5
'WDR66 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S5088.  Gene #484: 'WDR66 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
WDR66 MUTATED 3 0 1 3 0
WDR66 WILD-TYPE 29 18 45 24 23
'WDR66 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.92

Table S5089.  Gene #484: 'WDR66 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
WDR66 MUTATED 3 2 2
WDR66 WILD-TYPE 40 65 34
'WDR66 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00083 (Fisher's exact test), Q value = 0.022

Table S5090.  Gene #484: 'WDR66 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WDR66 MUTATED 0 3 15
WDR66 WILD-TYPE 42 170 132

Figure S1524.  Get High-res Image Gene #484: 'WDR66 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WDR66 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.37

Table S5091.  Gene #484: 'WDR66 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WDR66 MUTATED 7 3 2
WDR66 WILD-TYPE 55 70 73
'WDR66 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S5092.  Gene #484: 'WDR66 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WDR66 MUTATED 2 4 8
WDR66 WILD-TYPE 68 116 92
'WDR66 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S5093.  Gene #484: 'WDR66 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WDR66 MUTATED 2 2 1 0 1 6 2 0 0
WDR66 WILD-TYPE 39 24 29 29 38 63 18 14 22
'WDR66 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.78

Table S5094.  Gene #484: 'WDR66 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WDR66 MUTATED 3 3 6 7
WDR66 WILD-TYPE 97 69 66 114
'WDR66 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S5095.  Gene #484: 'WDR66 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WDR66 MUTATED 2 2 7 5 3
WDR66 WILD-TYPE 57 73 67 114 35
'WDR66 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S5096.  Gene #484: 'WDR66 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WDR66 MUTATED 1 5 4 3 5
WDR66 WILD-TYPE 50 71 57 68 90
'WDR66 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S5097.  Gene #484: 'WDR66 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WDR66 MUTATED 2 5 1 1 2 3 0 2 2
WDR66 WILD-TYPE 67 43 38 15 51 17 21 36 48
'WDR66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S5098.  Gene #484: 'WDR66 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
WDR66 MUTATED 2 1 1 1 1 0
WDR66 WILD-TYPE 11 15 13 10 10 9
'WDR66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S5099.  Gene #484: 'WDR66 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
WDR66 MUTATED 1 0 1 0 1 0 1 1 1
WDR66 WILD-TYPE 10 7 6 9 7 7 10 8 4
'GPR141 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.25

Table S5100.  Gene #485: 'GPR141 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GPR141 MUTATED 3 0 0 0 0
GPR141 WILD-TYPE 29 18 46 27 23
'GPR141 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S5101.  Gene #485: 'GPR141 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GPR141 MUTATED 3 0 0
GPR141 WILD-TYPE 40 67 36

Figure S1525.  Get High-res Image Gene #485: 'GPR141 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPR141 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S5102.  Gene #485: 'GPR141 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GPR141 MUTATED 0 3 8
GPR141 WILD-TYPE 42 170 139
'GPR141 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S5103.  Gene #485: 'GPR141 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GPR141 MUTATED 3 2 3
GPR141 WILD-TYPE 59 71 72
'GPR141 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 0.3

Table S5104.  Gene #485: 'GPR141 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GPR141 MUTATED 1 2 7
GPR141 WILD-TYPE 69 118 93
'GPR141 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.49

Table S5105.  Gene #485: 'GPR141 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GPR141 MUTATED 0 0 0 1 3 6 0 0 0
GPR141 WILD-TYPE 41 26 30 28 36 63 20 14 22
'GPR141 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S5106.  Gene #485: 'GPR141 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GPR141 MUTATED 2 3 3 3
GPR141 WILD-TYPE 98 69 69 118
'GPR141 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00141 (Fisher's exact test), Q value = 0.031

Table S5107.  Gene #485: 'GPR141 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GPR141 MUTATED 0 2 6 0 3
GPR141 WILD-TYPE 59 73 68 119 35

Figure S1526.  Get High-res Image Gene #485: 'GPR141 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GPR141 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.93

Table S5108.  Gene #485: 'GPR141 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GPR141 MUTATED 0 4 2 2 3
GPR141 WILD-TYPE 51 72 59 69 92
'GPR141 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S5109.  Gene #485: 'GPR141 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GPR141 MUTATED 3 4 0 1 0 0 1 2 0
GPR141 WILD-TYPE 66 44 39 15 53 20 20 36 50
'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S5110.  Gene #485: 'GPR141 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GPR141 MUTATED 1 0 0 0 2 0
GPR141 WILD-TYPE 12 16 14 11 9 9
'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S5111.  Gene #485: 'GPR141 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GPR141 MUTATED 0 0 0 1 0 0 2 0 0
GPR141 WILD-TYPE 11 7 7 8 8 7 9 9 5
'ATP6V1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S5112.  Gene #486: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATP6V1D MUTATED 1 3 2
ATP6V1D WILD-TYPE 41 170 145
'ATP6V1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.78

Table S5113.  Gene #486: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATP6V1D MUTATED 3 2 1
ATP6V1D WILD-TYPE 59 71 74
'ATP6V1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S5114.  Gene #486: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATP6V1D MUTATED 1 1 4
ATP6V1D WILD-TYPE 69 119 96
'ATP6V1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S5115.  Gene #486: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATP6V1D MUTATED 1 0 0 1 1 2 0 0 1
ATP6V1D WILD-TYPE 40 26 30 28 38 67 20 14 21
'ATP6V1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 0.21

Table S5116.  Gene #486: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATP6V1D MUTATED 3 3 0 0
ATP6V1D WILD-TYPE 97 69 72 121

Figure S1527.  Get High-res Image Gene #486: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ATP6V1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S5117.  Gene #486: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATP6V1D MUTATED 1 2 3 0 0
ATP6V1D WILD-TYPE 58 73 71 119 38
'ATP6V1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00358 (Fisher's exact test), Q value = 0.053

Table S5118.  Gene #486: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATP6V1D MUTATED 1 5 0 0 0
ATP6V1D WILD-TYPE 50 71 61 71 95

Figure S1528.  Get High-res Image Gene #486: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ATP6V1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S5119.  Gene #486: 'ATP6V1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATP6V1D MUTATED 3 0 2 0 1 0 0 0 0
ATP6V1D WILD-TYPE 66 48 37 16 52 20 21 38 50
'LPCAT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.97

Table S5120.  Gene #487: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LPCAT3 MUTATED 1 2 2
LPCAT3 WILD-TYPE 41 171 145
'LPCAT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S5121.  Gene #487: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LPCAT3 MUTATED 2 0 1
LPCAT3 WILD-TYPE 60 73 74
'LPCAT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S5122.  Gene #487: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LPCAT3 MUTATED 0 1 3
LPCAT3 WILD-TYPE 70 119 97
'LPCAT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S5123.  Gene #487: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LPCAT3 MUTATED 0 0 0 1 0 2 1 0 0
LPCAT3 WILD-TYPE 41 26 30 28 39 67 19 14 22
'LPCAT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S5124.  Gene #487: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LPCAT3 MUTATED 0 1 2 2
LPCAT3 WILD-TYPE 100 71 70 119
'LPCAT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S5125.  Gene #487: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LPCAT3 MUTATED 1 0 2 1 1
LPCAT3 WILD-TYPE 58 75 72 118 37
'LPCAT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S5126.  Gene #487: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LPCAT3 MUTATED 0 3 0 0 1
LPCAT3 WILD-TYPE 51 73 61 71 94
'LPCAT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.94

Table S5127.  Gene #487: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LPCAT3 MUTATED 1 1 0 1 1 0 0 0 0
LPCAT3 WILD-TYPE 68 47 39 15 52 20 21 38 50
'LPCAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 0.95

Table S5128.  Gene #487: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LPCAT3 MUTATED 0 0 1 1 1 0
LPCAT3 WILD-TYPE 13 16 13 10 10 9
'LPCAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S5129.  Gene #487: 'LPCAT3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LPCAT3 MUTATED 0 0 0 1 0 0 2 0 0
LPCAT3 WILD-TYPE 11 7 7 8 8 7 9 9 5
'SP4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S5130.  Gene #488: 'SP4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SP4 MUTATED 2 0 0 1 0
SP4 WILD-TYPE 30 18 46 26 23
'SP4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S5131.  Gene #488: 'SP4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SP4 MUTATED 2 1 0
SP4 WILD-TYPE 41 66 36
'SP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.27

Table S5132.  Gene #488: 'SP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SP4 MUTATED 2 2 8
SP4 WILD-TYPE 40 171 139
'SP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.94

Table S5133.  Gene #488: 'SP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SP4 MUTATED 4 2 3
SP4 WILD-TYPE 58 71 72
'SP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.99

Table S5134.  Gene #488: 'SP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SP4 MUTATED 1 4 4
SP4 WILD-TYPE 69 116 96
'SP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S5135.  Gene #488: 'SP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SP4 MUTATED 1 0 1 1 0 3 0 1 2
SP4 WILD-TYPE 40 26 29 28 39 66 20 13 20
'SP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S5136.  Gene #488: 'SP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SP4 MUTATED 2 4 3 3
SP4 WILD-TYPE 98 68 69 118
'SP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S5137.  Gene #488: 'SP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SP4 MUTATED 1 3 5 1 2
SP4 WILD-TYPE 58 72 69 118 36
'SP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.066 (Fisher's exact test), Q value = 0.28

Table S5138.  Gene #488: 'SP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SP4 MUTATED 2 6 1 0 2
SP4 WILD-TYPE 49 70 60 71 93
'SP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S5139.  Gene #488: 'SP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SP4 MUTATED 4 1 1 1 1 2 0 1 0
SP4 WILD-TYPE 65 47 38 15 52 18 21 37 50
'SP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S5140.  Gene #488: 'SP4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SP4 MUTATED 0 1 1 0 1 0
SP4 WILD-TYPE 13 15 13 11 10 9
'SP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S5141.  Gene #488: 'SP4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SP4 MUTATED 1 0 0 1 1 0 0 0 0
SP4 WILD-TYPE 10 7 7 8 7 7 11 9 5
'PLA2G4E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S5142.  Gene #489: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PLA2G4E MUTATED 1 3 6
PLA2G4E WILD-TYPE 41 170 141
'PLA2G4E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S5143.  Gene #489: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PLA2G4E MUTATED 2 3 5
PLA2G4E WILD-TYPE 60 70 70
'PLA2G4E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S5144.  Gene #489: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PLA2G4E MUTATED 1 3 5
PLA2G4E WILD-TYPE 69 117 95
'PLA2G4E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S5145.  Gene #489: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PLA2G4E MUTATED 1 1 0 1 2 4 0 0 0
PLA2G4E WILD-TYPE 40 25 30 28 37 65 20 14 22
'PLA2G4E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.21

Table S5146.  Gene #489: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PLA2G4E MUTATED 3 4 3 0
PLA2G4E WILD-TYPE 97 68 69 121

Figure S1529.  Get High-res Image Gene #489: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PLA2G4E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S5147.  Gene #489: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PLA2G4E MUTATED 1 5 4 0 0
PLA2G4E WILD-TYPE 58 70 70 119 38

Figure S1530.  Get High-res Image Gene #489: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PLA2G4E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S5148.  Gene #489: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PLA2G4E MUTATED 1 8 1 0 0
PLA2G4E WILD-TYPE 50 68 60 71 95

Figure S1531.  Get High-res Image Gene #489: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PLA2G4E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S5149.  Gene #489: 'PLA2G4E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PLA2G4E MUTATED 2 3 0 2 2 1 0 0 0
PLA2G4E WILD-TYPE 67 45 39 14 51 19 21 38 50
'RAB40C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.13

Table S5150.  Gene #490: 'RAB40C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RAB40C MUTATED 1 0 6
RAB40C WILD-TYPE 41 173 141

Figure S1532.  Get High-res Image Gene #490: 'RAB40C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAB40C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S5151.  Gene #490: 'RAB40C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RAB40C MUTATED 3 0 4
RAB40C WILD-TYPE 59 73 71
'RAB40C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S5152.  Gene #490: 'RAB40C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RAB40C MUTATED 1 3 4
RAB40C WILD-TYPE 69 117 96
'RAB40C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.95

Table S5153.  Gene #490: 'RAB40C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RAB40C MUTATED 0 1 0 2 1 3 1 0 0
RAB40C WILD-TYPE 41 25 30 27 38 66 19 14 22
'RAB40C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00886 (Fisher's exact test), Q value = 0.088

Table S5154.  Gene #490: 'RAB40C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RAB40C MUTATED 0 5 2 1
RAB40C WILD-TYPE 100 67 70 120

Figure S1533.  Get High-res Image Gene #490: 'RAB40C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RAB40C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00413 (Fisher's exact test), Q value = 0.058

Table S5155.  Gene #490: 'RAB40C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RAB40C MUTATED 0 0 6 1 1
RAB40C WILD-TYPE 59 75 68 118 37

Figure S1534.  Get High-res Image Gene #490: 'RAB40C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RAB40C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 0.17

Table S5156.  Gene #490: 'RAB40C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RAB40C MUTATED 0 5 0 0 3
RAB40C WILD-TYPE 51 71 61 71 92

Figure S1535.  Get High-res Image Gene #490: 'RAB40C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RAB40C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.036 (Fisher's exact test), Q value = 0.2

Table S5157.  Gene #490: 'RAB40C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RAB40C MUTATED 2 1 0 2 0 0 0 3 0
RAB40C WILD-TYPE 67 47 39 14 53 20 21 35 50

Figure S1536.  Get High-res Image Gene #490: 'RAB40C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'UGT3A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S5158.  Gene #491: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
UGT3A2 MUTATED 2 0 0 1 1
UGT3A2 WILD-TYPE 30 18 46 26 22
'UGT3A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S5159.  Gene #491: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
UGT3A2 MUTATED 2 1 1
UGT3A2 WILD-TYPE 41 66 35
'UGT3A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00502 (Fisher's exact test), Q value = 0.066

Table S5160.  Gene #491: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UGT3A2 MUTATED 0 4 14
UGT3A2 WILD-TYPE 42 169 133

Figure S1537.  Get High-res Image Gene #491: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UGT3A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S5161.  Gene #491: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UGT3A2 MUTATED 7 2 5
UGT3A2 WILD-TYPE 55 71 70
'UGT3A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 0.24

Table S5162.  Gene #491: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UGT3A2 MUTATED 1 5 10
UGT3A2 WILD-TYPE 69 115 90

Figure S1538.  Get High-res Image Gene #491: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'UGT3A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.88

Table S5163.  Gene #491: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UGT3A2 MUTATED 1 2 1 0 2 7 2 0 1
UGT3A2 WILD-TYPE 40 24 29 29 37 62 18 14 21
'UGT3A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S5164.  Gene #491: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UGT3A2 MUTATED 2 6 5 5
UGT3A2 WILD-TYPE 98 66 67 116
'UGT3A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0483 (Fisher's exact test), Q value = 0.24

Table S5165.  Gene #491: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UGT3A2 MUTATED 2 2 9 3 2
UGT3A2 WILD-TYPE 57 73 65 116 36

Figure S1539.  Get High-res Image Gene #491: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UGT3A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0093

Table S5166.  Gene #491: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UGT3A2 MUTATED 0 11 1 0 6
UGT3A2 WILD-TYPE 51 65 60 71 89

Figure S1540.  Get High-res Image Gene #491: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'UGT3A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S5167.  Gene #491: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UGT3A2 MUTATED 2 5 1 3 1 1 0 3 2
UGT3A2 WILD-TYPE 67 43 38 13 52 19 21 35 48
'UGT3A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S5168.  Gene #491: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
UGT3A2 MUTATED 1 0 1 1 2 0
UGT3A2 WILD-TYPE 12 16 13 10 9 9
'UGT3A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S5169.  Gene #491: 'UGT3A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
UGT3A2 MUTATED 0 0 0 0 0 1 3 1 0
UGT3A2 WILD-TYPE 11 7 7 9 8 6 8 8 5
'ATAD2B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S5170.  Gene #492: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATAD2B MUTATED 2 1 0 1 0
ATAD2B WILD-TYPE 30 17 46 26 23
'ATAD2B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.89

Table S5171.  Gene #492: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATAD2B MUTATED 2 2 0
ATAD2B WILD-TYPE 41 65 36
'ATAD2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S5172.  Gene #492: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATAD2B MUTATED 2 4 9
ATAD2B WILD-TYPE 40 169 138
'ATAD2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.087 (Fisher's exact test), Q value = 0.32

Table S5173.  Gene #492: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATAD2B MUTATED 6 1 5
ATAD2B WILD-TYPE 56 72 70
'ATAD2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S5174.  Gene #492: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATAD2B MUTATED 3 5 6
ATAD2B WILD-TYPE 67 115 94
'ATAD2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S5175.  Gene #492: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATAD2B MUTATED 3 0 2 1 2 4 0 0 2
ATAD2B WILD-TYPE 38 26 28 28 37 65 20 14 20
'ATAD2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 0.12

Table S5176.  Gene #492: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATAD2B MUTATED 1 2 8 4
ATAD2B WILD-TYPE 99 70 64 117

Figure S1541.  Get High-res Image Gene #492: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ATAD2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0792 (Fisher's exact test), Q value = 0.31

Table S5177.  Gene #492: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATAD2B MUTATED 4 1 6 2 2
ATAD2B WILD-TYPE 55 74 68 117 36
'ATAD2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.065 (Fisher's exact test), Q value = 0.28

Table S5178.  Gene #492: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATAD2B MUTATED 0 4 6 1 3
ATAD2B WILD-TYPE 51 72 55 70 92
'ATAD2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S5179.  Gene #492: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATAD2B MUTATED 4 5 0 1 1 1 0 2 0
ATAD2B WILD-TYPE 65 43 39 15 52 19 21 36 50
'ATAD2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S5180.  Gene #492: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ATAD2B MUTATED 1 2 1 0 1 1
ATAD2B WILD-TYPE 12 14 13 11 10 8
'ATAD2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S5181.  Gene #492: 'ATAD2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ATAD2B MUTATED 2 0 0 0 0 1 2 1 0
ATAD2B WILD-TYPE 9 7 7 9 8 6 9 8 5
'SLC33A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.94

Table S5182.  Gene #493: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC33A1 MUTATED 1 3 5
SLC33A1 WILD-TYPE 41 170 142
'SLC33A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S5183.  Gene #493: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC33A1 MUTATED 3 2 3
SLC33A1 WILD-TYPE 59 71 72
'SLC33A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.58

Table S5184.  Gene #493: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC33A1 MUTATED 0 3 4
SLC33A1 WILD-TYPE 70 117 96
'SLC33A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S5185.  Gene #493: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC33A1 MUTATED 0 1 0 1 0 3 2 0 0
SLC33A1 WILD-TYPE 41 25 30 28 39 66 18 14 22
'SLC33A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0482 (Fisher's exact test), Q value = 0.24

Table S5186.  Gene #493: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC33A1 MUTATED 1 5 2 1
SLC33A1 WILD-TYPE 99 67 70 120

Figure S1542.  Get High-res Image Gene #493: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC33A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.56

Table S5187.  Gene #493: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC33A1 MUTATED 2 2 4 1 0
SLC33A1 WILD-TYPE 57 73 70 118 38
'SLC33A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.56

Table S5188.  Gene #493: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC33A1 MUTATED 1 5 1 1 1
SLC33A1 WILD-TYPE 50 71 60 70 94
'SLC33A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S5189.  Gene #493: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC33A1 MUTATED 4 1 1 0 2 0 0 0 1
SLC33A1 WILD-TYPE 65 47 38 16 51 20 21 38 49
'SLC33A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S5190.  Gene #493: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLC33A1 MUTATED 0 0 1 1 0 1
SLC33A1 WILD-TYPE 13 16 13 10 11 8
'SLC33A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.94

Table S5191.  Gene #493: 'SLC33A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLC33A1 MUTATED 1 0 0 0 0 0 2 0 0
SLC33A1 WILD-TYPE 10 7 7 9 8 7 9 9 5
'ABCB4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S5192.  Gene #494: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ABCB4 MUTATED 3 0 1 2 0
ABCB4 WILD-TYPE 29 18 45 25 23
'ABCB4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S5193.  Gene #494: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ABCB4 MUTATED 3 3 0
ABCB4 WILD-TYPE 40 64 36
'ABCB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.0087

Table S5194.  Gene #494: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ABCB4 MUTATED 3 2 17
ABCB4 WILD-TYPE 39 171 130

Figure S1543.  Get High-res Image Gene #494: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ABCB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0729 (Fisher's exact test), Q value = 0.29

Table S5195.  Gene #494: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ABCB4 MUTATED 8 2 5
ABCB4 WILD-TYPE 54 71 70
'ABCB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S5196.  Gene #494: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ABCB4 MUTATED 3 8 9
ABCB4 WILD-TYPE 67 112 91
'ABCB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 0.74

Table S5197.  Gene #494: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ABCB4 MUTATED 2 4 2 2 1 8 1 0 0
ABCB4 WILD-TYPE 39 22 28 27 38 61 19 14 22
'ABCB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0702 (Fisher's exact test), Q value = 0.29

Table S5198.  Gene #494: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ABCB4 MUTATED 2 7 7 6
ABCB4 WILD-TYPE 98 65 65 115
'ABCB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S5199.  Gene #494: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ABCB4 MUTATED 1 4 8 5 4
ABCB4 WILD-TYPE 58 71 66 114 34
'ABCB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S5200.  Gene #494: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ABCB4 MUTATED 2 7 3 1 7
ABCB4 WILD-TYPE 49 69 58 70 88
'ABCB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S5201.  Gene #494: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ABCB4 MUTATED 3 5 0 3 3 1 0 3 2
ABCB4 WILD-TYPE 66 43 39 13 50 19 21 35 48
'ABCB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00473 (Fisher's exact test), Q value = 0.064

Table S5202.  Gene #494: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ABCB4 MUTATED 0 1 0 0 4 0
ABCB4 WILD-TYPE 13 15 14 11 7 9

Figure S1544.  Get High-res Image Gene #494: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ABCB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S5203.  Gene #494: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ABCB4 MUTATED 0 0 0 2 0 1 2 0 0
ABCB4 WILD-TYPE 11 7 7 7 8 6 9 9 5
'RUFY1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S5204.  Gene #495: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RUFY1 MUTATED 2 3 8
RUFY1 WILD-TYPE 40 170 139
'RUFY1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S5205.  Gene #495: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RUFY1 MUTATED 3 4 6
RUFY1 WILD-TYPE 59 69 69
'RUFY1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S5206.  Gene #495: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RUFY1 MUTATED 2 6 3
RUFY1 WILD-TYPE 68 114 97
'RUFY1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0377 (Fisher's exact test), Q value = 0.21

Table S5207.  Gene #495: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RUFY1 MUTATED 0 0 0 4 1 3 0 2 1
RUFY1 WILD-TYPE 41 26 30 25 38 66 20 12 21

Figure S1545.  Get High-res Image Gene #495: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'RUFY1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S5208.  Gene #495: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RUFY1 MUTATED 3 10 0 0
RUFY1 WILD-TYPE 97 62 72 121

Figure S1546.  Get High-res Image Gene #495: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RUFY1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0069

Table S5209.  Gene #495: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RUFY1 MUTATED 0 6 7 0 0
RUFY1 WILD-TYPE 59 69 67 119 38

Figure S1547.  Get High-res Image Gene #495: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RUFY1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0081

Table S5210.  Gene #495: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RUFY1 MUTATED 3 9 0 0 1
RUFY1 WILD-TYPE 48 67 61 71 94

Figure S1548.  Get High-res Image Gene #495: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RUFY1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00971 (Fisher's exact test), Q value = 0.093

Table S5211.  Gene #495: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RUFY1 MUTATED 5 0 0 3 2 2 0 0 1
RUFY1 WILD-TYPE 64 48 39 13 51 18 21 38 49

Figure S1549.  Get High-res Image Gene #495: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IBTK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00728 (Fisher's exact test), Q value = 0.08

Table S5212.  Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IBTK MUTATED 5 0 0 1 0
IBTK WILD-TYPE 27 18 46 26 23

Figure S1550.  Get High-res Image Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'IBTK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S5213.  Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IBTK MUTATED 5 1 0
IBTK WILD-TYPE 38 66 36

Figure S1551.  Get High-res Image Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IBTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0423 (Fisher's exact test), Q value = 0.22

Table S5214.  Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IBTK MUTATED 2 4 12
IBTK WILD-TYPE 40 169 135

Figure S1552.  Get High-res Image Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IBTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S5215.  Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IBTK MUTATED 3 4 6
IBTK WILD-TYPE 59 69 69
'IBTK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S5216.  Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IBTK MUTATED 2 6 7
IBTK WILD-TYPE 68 114 93
'IBTK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S5217.  Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IBTK MUTATED 3 1 2 1 1 4 2 0 1
IBTK WILD-TYPE 38 25 28 28 38 65 18 14 21
'IBTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S5218.  Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IBTK MUTATED 3 7 3 6
IBTK WILD-TYPE 97 65 69 115
'IBTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0218 (Fisher's exact test), Q value = 0.15

Table S5219.  Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IBTK MUTATED 3 2 8 2 4
IBTK WILD-TYPE 56 73 66 117 34

Figure S1553.  Get High-res Image Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IBTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S5220.  Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IBTK MUTATED 2 6 3 1 7
IBTK WILD-TYPE 49 70 58 70 88
'IBTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.15

Table S5221.  Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IBTK MUTATED 3 4 0 4 1 1 1 4 1
IBTK WILD-TYPE 66 44 39 12 52 19 20 34 49

Figure S1554.  Get High-res Image Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IBTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S5222.  Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IBTK MUTATED 2 1 1 2 1 0
IBTK WILD-TYPE 11 15 13 9 10 9
'IBTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0732 (Fisher's exact test), Q value = 0.29

Table S5223.  Gene #496: 'IBTK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IBTK MUTATED 0 0 3 1 0 1 1 0 1
IBTK WILD-TYPE 11 7 4 8 8 6 10 9 4
'PNP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.14

Table S5224.  Gene #497: 'PNP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PNP MUTATED 2 0 2
PNP WILD-TYPE 40 173 145

Figure S1555.  Get High-res Image Gene #497: 'PNP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PNP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S5225.  Gene #497: 'PNP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PNP MUTATED 0 1 2
PNP WILD-TYPE 62 72 73
'PNP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5226.  Gene #497: 'PNP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PNP MUTATED 1 1 1
PNP WILD-TYPE 69 119 99
'PNP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S5227.  Gene #497: 'PNP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PNP MUTATED 0 0 0 1 2 0 0 0 0
PNP WILD-TYPE 41 26 30 28 37 69 20 14 22
'PNP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S5228.  Gene #497: 'PNP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PNP MUTATED 1 2 0 1
PNP WILD-TYPE 99 70 72 120
'PNP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S5229.  Gene #497: 'PNP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PNP MUTATED 0 1 2 0 1
PNP WILD-TYPE 59 74 72 119 37
'PNP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S5230.  Gene #497: 'PNP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PNP MUTATED 1 1 0 0 2
PNP WILD-TYPE 50 75 61 71 93
'PNP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.57

Table S5231.  Gene #497: 'PNP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PNP MUTATED 0 0 1 1 1 0 0 1 0
PNP WILD-TYPE 69 48 38 15 52 20 21 37 50
'ACTL8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S5232.  Gene #498: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ACTL8 MUTATED 2 1 0 0 0
ACTL8 WILD-TYPE 30 17 46 27 23
'ACTL8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S5233.  Gene #498: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ACTL8 MUTATED 2 0 1
ACTL8 WILD-TYPE 41 67 35
'ACTL8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.94

Table S5234.  Gene #498: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ACTL8 MUTATED 1 3 5
ACTL8 WILD-TYPE 41 170 142
'ACTL8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S5235.  Gene #498: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ACTL8 MUTATED 2 1 3
ACTL8 WILD-TYPE 60 72 72
'ACTL8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S5236.  Gene #498: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ACTL8 MUTATED 1 3 1
ACTL8 WILD-TYPE 69 117 99
'ACTL8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0292 (Fisher's exact test), Q value = 0.18

Table S5237.  Gene #498: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ACTL8 MUTATED 1 0 0 0 1 0 1 2 0
ACTL8 WILD-TYPE 40 26 30 29 38 69 19 12 22

Figure S1556.  Get High-res Image Gene #498: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ACTL8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S5238.  Gene #498: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ACTL8 MUTATED 2 4 1 2
ACTL8 WILD-TYPE 98 68 71 119
'ACTL8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S5239.  Gene #498: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ACTL8 MUTATED 1 1 4 2 1
ACTL8 WILD-TYPE 58 74 70 117 37
'ACTL8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S5240.  Gene #498: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ACTL8 MUTATED 0 5 0 2 2
ACTL8 WILD-TYPE 51 71 61 69 93
'ACTL8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S5241.  Gene #498: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ACTL8 MUTATED 4 0 0 0 3 0 1 1 0
ACTL8 WILD-TYPE 65 48 39 16 50 20 20 37 50
'ACTL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S5242.  Gene #498: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ACTL8 MUTATED 0 1 1 1 0 0
ACTL8 WILD-TYPE 13 15 13 10 11 9
'ACTL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S5243.  Gene #498: 'ACTL8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ACTL8 MUTATED 1 0 0 0 1 0 0 1 0
ACTL8 WILD-TYPE 10 7 7 9 7 7 11 8 5
'CDK14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5244.  Gene #499: 'CDK14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CDK14 MUTATED 1 1 2 1 1
CDK14 WILD-TYPE 31 17 44 26 22
'CDK14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S5245.  Gene #499: 'CDK14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CDK14 MUTATED 2 2 2
CDK14 WILD-TYPE 41 65 34
'CDK14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.95

Table S5246.  Gene #499: 'CDK14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CDK14 MUTATED 1 6 8
CDK14 WILD-TYPE 41 167 139
'CDK14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S5247.  Gene #499: 'CDK14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CDK14 MUTATED 3 2 4
CDK14 WILD-TYPE 59 71 71
'CDK14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 0.24

Table S5248.  Gene #499: 'CDK14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CDK14 MUTATED 0 5 7
CDK14 WILD-TYPE 70 115 93
'CDK14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S5249.  Gene #499: 'CDK14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CDK14 MUTATED 1 0 0 3 0 6 1 1 0
CDK14 WILD-TYPE 40 26 30 26 39 63 19 13 22
'CDK14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S5250.  Gene #499: 'CDK14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CDK14 MUTATED 2 6 2 5
CDK14 WILD-TYPE 98 66 70 116
'CDK14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S5251.  Gene #499: 'CDK14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CDK14 MUTATED 1 1 7 4 2
CDK14 WILD-TYPE 58 74 67 115 36
'CDK14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S5252.  Gene #499: 'CDK14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CDK14 MUTATED 2 6 1 2 3
CDK14 WILD-TYPE 49 70 60 69 92
'CDK14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 0.21

Table S5253.  Gene #499: 'CDK14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CDK14 MUTATED 3 2 0 3 0 2 0 1 3
CDK14 WILD-TYPE 66 46 39 13 53 18 21 37 47

Figure S1557.  Get High-res Image Gene #499: 'CDK14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AXIN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S5254.  Gene #500: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AXIN2 MUTATED 3 0 2 1 0
AXIN2 WILD-TYPE 29 18 44 26 23
'AXIN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.88

Table S5255.  Gene #500: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AXIN2 MUTATED 3 2 1
AXIN2 WILD-TYPE 40 65 35
'AXIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.003 (Fisher's exact test), Q value = 0.048

Table S5256.  Gene #500: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AXIN2 MUTATED 0 5 16
AXIN2 WILD-TYPE 42 168 131

Figure S1558.  Get High-res Image Gene #500: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AXIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S5257.  Gene #500: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AXIN2 MUTATED 7 3 4
AXIN2 WILD-TYPE 55 70 71
'AXIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.98

Table S5258.  Gene #500: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AXIN2 MUTATED 3 8 8
AXIN2 WILD-TYPE 67 112 92
'AXIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S5259.  Gene #500: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AXIN2 MUTATED 2 0 3 1 3 5 4 0 1
AXIN2 WILD-TYPE 39 26 27 28 36 64 16 14 21
'AXIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S5260.  Gene #500: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AXIN2 MUTATED 2 5 7 7
AXIN2 WILD-TYPE 98 67 65 114
'AXIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00624 (Fisher's exact test), Q value = 0.074

Table S5261.  Gene #500: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AXIN2 MUTATED 1 2 11 4 3
AXIN2 WILD-TYPE 58 73 63 115 35

Figure S1559.  Get High-res Image Gene #500: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AXIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S5262.  Gene #500: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AXIN2 MUTATED 1 9 2 2 6
AXIN2 WILD-TYPE 50 67 59 69 89
'AXIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S5263.  Gene #500: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AXIN2 MUTATED 4 5 0 1 2 3 1 3 1
AXIN2 WILD-TYPE 65 43 39 15 51 17 20 35 49
'AXIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.93

Table S5264.  Gene #500: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AXIN2 MUTATED 0 1 2 0 1 0
AXIN2 WILD-TYPE 13 15 12 11 10 9
'AXIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S5265.  Gene #500: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AXIN2 MUTATED 0 0 0 0 1 0 3 0 0
AXIN2 WILD-TYPE 11 7 7 9 7 7 8 9 5
'KCNH7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00785 (Fisher's exact test), Q value = 0.083

Table S5266.  Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KCNH7 MUTATED 6 0 0 2 1
KCNH7 WILD-TYPE 26 18 46 25 22

Figure S1560.  Get High-res Image Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KCNH7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S5267.  Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KCNH7 MUTATED 6 1 2
KCNH7 WILD-TYPE 37 66 34

Figure S1561.  Get High-res Image Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KCNH7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.19

Table S5268.  Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KCNH7 MUTATED 3 9 20
KCNH7 WILD-TYPE 39 164 127

Figure S1562.  Get High-res Image Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KCNH7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.51

Table S5269.  Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KCNH7 MUTATED 10 7 5
KCNH7 WILD-TYPE 52 66 70
'KCNH7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00159 (Fisher's exact test), Q value = 0.033

Table S5270.  Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KCNH7 MUTATED 2 6 17
KCNH7 WILD-TYPE 68 114 83

Figure S1563.  Get High-res Image Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KCNH7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S5271.  Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KCNH7 MUTATED 1 1 2 1 3 12 3 1 1
KCNH7 WILD-TYPE 40 25 28 28 36 57 17 13 21
'KCNH7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S5272.  Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KCNH7 MUTATED 8 4 9 11
KCNH7 WILD-TYPE 92 68 63 110
'KCNH7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.18

Table S5273.  Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KCNH7 MUTATED 6 6 9 4 7
KCNH7 WILD-TYPE 53 69 65 115 31

Figure S1564.  Get High-res Image Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KCNH7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S5274.  Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KCNH7 MUTATED 5 9 5 5 7
KCNH7 WILD-TYPE 46 67 56 66 88
'KCNH7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S5275.  Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KCNH7 MUTATED 9 8 1 1 4 0 0 5 3
KCNH7 WILD-TYPE 60 40 38 15 49 20 21 33 47
'KCNH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.92

Table S5276.  Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KCNH7 MUTATED 1 2 1 1 3 0
KCNH7 WILD-TYPE 12 14 13 10 8 9
'KCNH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.76

Table S5277.  Gene #501: 'KCNH7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KCNH7 MUTATED 2 0 0 0 1 1 3 0 1
KCNH7 WILD-TYPE 9 7 7 9 7 6 8 9 4
'SPCS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5278.  Gene #502: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SPCS2 MUTATED 0 3 2
SPCS2 WILD-TYPE 42 170 145
'SPCS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S5279.  Gene #502: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SPCS2 MUTATED 0 4 1
SPCS2 WILD-TYPE 62 69 74
'SPCS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.62

Table S5280.  Gene #502: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SPCS2 MUTATED 0 4 1
SPCS2 WILD-TYPE 70 116 99
'SPCS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S5281.  Gene #502: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SPCS2 MUTATED 0 0 1 1 1 1 0 0 1
SPCS2 WILD-TYPE 41 26 29 28 38 68 20 14 21
'SPCS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S5282.  Gene #502: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SPCS2 MUTATED 3 1 1 0
SPCS2 WILD-TYPE 97 71 71 121
'SPCS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S5283.  Gene #502: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SPCS2 MUTATED 1 3 1 0 0
SPCS2 WILD-TYPE 58 72 73 119 38
'SPCS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S5284.  Gene #502: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SPCS2 MUTATED 1 2 0 2 0
SPCS2 WILD-TYPE 50 74 61 69 95
'SPCS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0494 (Fisher's exact test), Q value = 0.24

Table S5285.  Gene #502: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SPCS2 MUTATED 5 0 0 0 0 0 0 0 0
SPCS2 WILD-TYPE 64 48 39 16 53 20 21 38 50

Figure S1565.  Get High-res Image Gene #502: 'SPCS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TNRC6C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00045 (Fisher's exact test), Q value = 0.015

Table S5286.  Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TNRC6C MUTATED 6 0 0 0 0
TNRC6C WILD-TYPE 26 18 46 27 23

Figure S1566.  Get High-res Image Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TNRC6C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00687 (Fisher's exact test), Q value = 0.077

Table S5287.  Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TNRC6C MUTATED 5 0 1
TNRC6C WILD-TYPE 38 67 35

Figure S1567.  Get High-res Image Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TNRC6C MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S5288.  Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TNRC6C MUTATED 0 0 17
TNRC6C WILD-TYPE 42 173 130

Figure S1568.  Get High-res Image Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TNRC6C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00346 (Fisher's exact test), Q value = 0.052

Table S5289.  Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TNRC6C MUTATED 3 0 9
TNRC6C WILD-TYPE 59 73 66

Figure S1569.  Get High-res Image Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TNRC6C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S5290.  Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TNRC6C MUTATED 4 4 7
TNRC6C WILD-TYPE 66 116 93
'TNRC6C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S5291.  Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TNRC6C MUTATED 2 1 0 2 3 4 3 0 0
TNRC6C WILD-TYPE 39 25 30 27 36 65 17 14 22
'TNRC6C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00716 (Fisher's exact test), Q value = 0.079

Table S5292.  Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TNRC6C MUTATED 0 7 5 6
TNRC6C WILD-TYPE 100 65 67 115

Figure S1570.  Get High-res Image Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TNRC6C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S5293.  Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TNRC6C MUTATED 1 0 11 1 5
TNRC6C WILD-TYPE 58 75 63 118 33

Figure S1571.  Get High-res Image Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TNRC6C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00594 (Fisher's exact test), Q value = 0.073

Table S5294.  Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TNRC6C MUTATED 0 9 1 1 7
TNRC6C WILD-TYPE 51 67 60 70 88

Figure S1572.  Get High-res Image Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TNRC6C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00313 (Fisher's exact test), Q value = 0.049

Table S5295.  Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TNRC6C MUTATED 2 3 0 4 3 0 1 5 0
TNRC6C WILD-TYPE 67 45 39 12 50 20 20 33 50

Figure S1573.  Get High-res Image Gene #503: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OR4E2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S5296.  Gene #504: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR4E2 MUTATED 0 0 5
OR4E2 WILD-TYPE 42 173 142

Figure S1574.  Get High-res Image Gene #504: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OR4E2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0825 (Fisher's exact test), Q value = 0.31

Table S5297.  Gene #504: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR4E2 MUTATED 1 0 4
OR4E2 WILD-TYPE 61 73 71
'OR4E2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S5298.  Gene #504: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR4E2 MUTATED 0 4 1
OR4E2 WILD-TYPE 70 116 99
'OR4E2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S5299.  Gene #504: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR4E2 MUTATED 0 1 0 3 0 1 0 0 0
OR4E2 WILD-TYPE 41 25 30 26 39 68 20 14 22
'OR4E2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S5300.  Gene #504: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR4E2 MUTATED 0 4 0 1
OR4E2 WILD-TYPE 100 68 72 120

Figure S1575.  Get High-res Image Gene #504: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR4E2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0432 (Fisher's exact test), Q value = 0.22

Table S5301.  Gene #504: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR4E2 MUTATED 0 0 4 1 0
OR4E2 WILD-TYPE 59 75 70 118 38

Figure S1576.  Get High-res Image Gene #504: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR4E2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0476 (Fisher's exact test), Q value = 0.23

Table S5302.  Gene #504: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR4E2 MUTATED 0 4 0 0 1
OR4E2 WILD-TYPE 51 72 61 71 94

Figure S1577.  Get High-res Image Gene #504: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR4E2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.61

Table S5303.  Gene #504: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR4E2 MUTATED 3 0 0 1 0 0 0 0 1
OR4E2 WILD-TYPE 66 48 39 15 53 20 21 38 49
'SULT6B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.51

Table S5304.  Gene #505: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SULT6B1 MUTATED 1 2 6
SULT6B1 WILD-TYPE 41 171 141
'SULT6B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.16

Table S5305.  Gene #505: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SULT6B1 MUTATED 5 2 0
SULT6B1 WILD-TYPE 57 71 75

Figure S1578.  Get High-res Image Gene #505: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SULT6B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5306.  Gene #505: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SULT6B1 MUTATED 2 3 3
SULT6B1 WILD-TYPE 68 117 97
'SULT6B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S5307.  Gene #505: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SULT6B1 MUTATED 1 1 1 0 0 4 0 0 1
SULT6B1 WILD-TYPE 40 25 29 29 39 65 20 14 21
'SULT6B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S5308.  Gene #505: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SULT6B1 MUTATED 2 3 1 3
SULT6B1 WILD-TYPE 98 69 71 118
'SULT6B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S5309.  Gene #505: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SULT6B1 MUTATED 1 2 3 3 0
SULT6B1 WILD-TYPE 58 73 71 116 38
'SULT6B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S5310.  Gene #505: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SULT6B1 MUTATED 1 3 1 1 3
SULT6B1 WILD-TYPE 50 73 60 70 92
'SULT6B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S5311.  Gene #505: 'SULT6B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SULT6B1 MUTATED 2 1 0 1 1 2 0 0 2
SULT6B1 WILD-TYPE 67 47 39 15 52 18 21 38 48
'LDHA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.94

Table S5312.  Gene #506: 'LDHA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LDHA MUTATED 1 3 5
LDHA WILD-TYPE 41 170 142
'LDHA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.91

Table S5313.  Gene #506: 'LDHA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LDHA MUTATED 1 3 4
LDHA WILD-TYPE 61 70 71
'LDHA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S5314.  Gene #506: 'LDHA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LDHA MUTATED 2 1 5
LDHA WILD-TYPE 68 119 95
'LDHA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0942 (Fisher's exact test), Q value = 0.33

Table S5315.  Gene #506: 'LDHA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LDHA MUTATED 2 0 0 0 0 3 3 0 0
LDHA WILD-TYPE 39 26 30 29 39 66 17 14 22
'LDHA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S5316.  Gene #506: 'LDHA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LDHA MUTATED 1 3 3 3
LDHA WILD-TYPE 99 69 69 118
'LDHA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S5317.  Gene #506: 'LDHA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LDHA MUTATED 2 2 3 1 2
LDHA WILD-TYPE 57 73 71 118 36
'LDHA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.094

Table S5318.  Gene #506: 'LDHA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LDHA MUTATED 4 4 0 0 1
LDHA WILD-TYPE 47 72 61 71 94

Figure S1579.  Get High-res Image Gene #506: 'LDHA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LDHA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0232 (Fisher's exact test), Q value = 0.16

Table S5319.  Gene #506: 'LDHA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LDHA MUTATED 0 3 1 1 0 2 1 1 0
LDHA WILD-TYPE 69 45 38 15 53 18 20 37 50

Figure S1580.  Get High-res Image Gene #506: 'LDHA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LDHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0941 (Fisher's exact test), Q value = 0.33

Table S5320.  Gene #506: 'LDHA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LDHA MUTATED 0 0 0 2 1 0
LDHA WILD-TYPE 13 16 14 9 10 9
'LDHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S5321.  Gene #506: 'LDHA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LDHA MUTATED 0 0 1 0 0 0 2 0 0
LDHA WILD-TYPE 11 7 6 9 8 7 9 9 5
'EIF4A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S5322.  Gene #507: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EIF4A2 MUTATED 0 1 2 0 1
EIF4A2 WILD-TYPE 32 17 44 27 22
'EIF4A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S5323.  Gene #507: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EIF4A2 MUTATED 0 2 2
EIF4A2 WILD-TYPE 43 65 34
'EIF4A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S5324.  Gene #507: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EIF4A2 MUTATED 1 4 5
EIF4A2 WILD-TYPE 41 169 142
'EIF4A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S5325.  Gene #507: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EIF4A2 MUTATED 3 0 3
EIF4A2 WILD-TYPE 59 73 72
'EIF4A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.89

Table S5326.  Gene #507: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EIF4A2 MUTATED 1 5 3
EIF4A2 WILD-TYPE 69 115 97
'EIF4A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.72

Table S5327.  Gene #507: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EIF4A2 MUTATED 1 3 0 1 1 2 0 1 0
EIF4A2 WILD-TYPE 40 23 30 28 38 67 20 13 22
'EIF4A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S5328.  Gene #507: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EIF4A2 MUTATED 1 3 3 3
EIF4A2 WILD-TYPE 99 69 69 118
'EIF4A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S5329.  Gene #507: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EIF4A2 MUTATED 2 0 3 5 0
EIF4A2 WILD-TYPE 57 75 71 114 38
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.62

Table S5330.  Gene #507: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EIF4A2 MUTATED 0 2 4 1 2
EIF4A2 WILD-TYPE 51 74 57 70 93
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0548 (Fisher's exact test), Q value = 0.25

Table S5331.  Gene #507: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EIF4A2 MUTATED 0 3 1 2 0 0 1 1 1
EIF4A2 WILD-TYPE 69 45 38 14 53 20 20 37 49
'RCSD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S5332.  Gene #508: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RCSD1 MUTATED 2 0 1 0 0
RCSD1 WILD-TYPE 30 18 45 27 23
'RCSD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S5333.  Gene #508: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RCSD1 MUTATED 2 0 1
RCSD1 WILD-TYPE 41 67 35
'RCSD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S5334.  Gene #508: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RCSD1 MUTATED 2 5 7
RCSD1 WILD-TYPE 40 168 140
'RCSD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S5335.  Gene #508: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RCSD1 MUTATED 4 2 5
RCSD1 WILD-TYPE 58 71 70
'RCSD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S5336.  Gene #508: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RCSD1 MUTATED 2 5 5
RCSD1 WILD-TYPE 68 115 95
'RCSD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.94

Table S5337.  Gene #508: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RCSD1 MUTATED 4 1 0 2 2 3 0 0 0
RCSD1 WILD-TYPE 37 25 30 27 37 66 20 14 22
'RCSD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0568 (Fisher's exact test), Q value = 0.25

Table S5338.  Gene #508: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RCSD1 MUTATED 1 4 6 3
RCSD1 WILD-TYPE 99 68 66 118
'RCSD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 0.14

Table S5339.  Gene #508: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RCSD1 MUTATED 3 1 7 1 2
RCSD1 WILD-TYPE 56 74 67 118 36

Figure S1581.  Get High-res Image Gene #508: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RCSD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 0.28

Table S5340.  Gene #508: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RCSD1 MUTATED 2 7 2 0 3
RCSD1 WILD-TYPE 49 69 59 71 92
'RCSD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 0.22

Table S5341.  Gene #508: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RCSD1 MUTATED 2 6 1 2 1 0 0 2 0
RCSD1 WILD-TYPE 67 42 38 14 52 20 21 36 50

Figure S1582.  Get High-res Image Gene #508: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RCSD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.64

Table S5342.  Gene #508: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RCSD1 MUTATED 0 2 0 1 2 0
RCSD1 WILD-TYPE 13 14 14 10 9 9
'RCSD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S5343.  Gene #508: 'RCSD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RCSD1 MUTATED 1 0 2 1 0 0 1 0 0
RCSD1 WILD-TYPE 10 7 5 8 8 7 10 9 5
'EIF5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.013

Table S5344.  Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EIF5B MUTATED 1 1 14
EIF5B WILD-TYPE 41 172 133

Figure S1583.  Get High-res Image Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EIF5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00142 (Fisher's exact test), Q value = 0.031

Table S5345.  Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EIF5B MUTATED 3 0 10
EIF5B WILD-TYPE 59 73 65

Figure S1584.  Get High-res Image Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'EIF5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S5346.  Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EIF5B MUTATED 4 4 5
EIF5B WILD-TYPE 66 116 95
'EIF5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.991 (Fisher's exact test), Q value = 1

Table S5347.  Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EIF5B MUTATED 1 2 1 1 2 4 1 0 1
EIF5B WILD-TYPE 40 24 29 28 37 65 19 14 21
'EIF5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00227 (Fisher's exact test), Q value = 0.04

Table S5348.  Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EIF5B MUTATED 0 8 4 4
EIF5B WILD-TYPE 100 64 68 117

Figure S1585.  Get High-res Image Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EIF5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00023 (Fisher's exact test), Q value = 0.0098

Table S5349.  Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EIF5B MUTATED 1 1 10 1 3
EIF5B WILD-TYPE 58 74 64 118 35

Figure S1586.  Get High-res Image Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00569 (Fisher's exact test), Q value = 0.071

Table S5350.  Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EIF5B MUTATED 1 9 1 0 5
EIF5B WILD-TYPE 50 67 60 71 90

Figure S1587.  Get High-res Image Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S5351.  Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EIF5B MUTATED 3 2 0 4 1 1 0 4 1
EIF5B WILD-TYPE 66 46 39 12 52 19 21 34 49

Figure S1588.  Get High-res Image Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00071 (Fisher's exact test), Q value = 0.02

Table S5352.  Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EIF5B MUTATED 0 0 0 0 4 0
EIF5B WILD-TYPE 13 16 14 11 7 9

Figure S1589.  Get High-res Image Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S5353.  Gene #509: 'EIF5B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EIF5B MUTATED 0 0 0 2 1 0 1 0 0
EIF5B WILD-TYPE 11 7 7 7 7 7 10 9 5
'FGFR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.21

Table S5354.  Gene #510: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FGFR1 MUTATED 1 4 12
FGFR1 WILD-TYPE 41 169 135

Figure S1590.  Get High-res Image Gene #510: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FGFR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.73

Table S5355.  Gene #510: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FGFR1 MUTATED 3 4 8
FGFR1 WILD-TYPE 59 69 67
'FGFR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0677 (Fisher's exact test), Q value = 0.28

Table S5356.  Gene #510: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FGFR1 MUTATED 0 8 5
FGFR1 WILD-TYPE 70 112 95
'FGFR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S5357.  Gene #510: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FGFR1 MUTATED 2 4 0 2 1 3 0 1 0
FGFR1 WILD-TYPE 39 22 30 27 38 66 20 13 22
'FGFR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S5358.  Gene #510: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FGFR1 MUTATED 2 9 2 4
FGFR1 WILD-TYPE 98 63 70 117

Figure S1591.  Get High-res Image Gene #510: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FGFR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0441 (Fisher's exact test), Q value = 0.22

Table S5359.  Gene #510: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FGFR1 MUTATED 2 2 9 3 1
FGFR1 WILD-TYPE 57 73 65 116 37

Figure S1592.  Get High-res Image Gene #510: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FGFR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.19

Table S5360.  Gene #510: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FGFR1 MUTATED 0 9 2 2 4
FGFR1 WILD-TYPE 51 67 59 69 91

Figure S1593.  Get High-res Image Gene #510: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FGFR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S5361.  Gene #510: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FGFR1 MUTATED 3 2 1 3 2 2 0 2 2
FGFR1 WILD-TYPE 66 46 38 13 51 18 21 36 48
'FGFR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.96

Table S5362.  Gene #510: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FGFR1 MUTATED 0 0 1 1 1 0
FGFR1 WILD-TYPE 13 16 13 10 10 9
'FGFR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S5363.  Gene #510: 'FGFR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FGFR1 MUTATED 0 0 1 1 0 0 1 0 0
FGFR1 WILD-TYPE 11 7 6 8 8 7 10 9 5
'ADNP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.18

Table S5364.  Gene #511: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ADNP2 MUTATED 1 3 11
ADNP2 WILD-TYPE 41 170 136

Figure S1594.  Get High-res Image Gene #511: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADNP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.24

Table S5365.  Gene #511: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ADNP2 MUTATED 3 1 8
ADNP2 WILD-TYPE 59 72 67
'ADNP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S5366.  Gene #511: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ADNP2 MUTATED 2 8 4
ADNP2 WILD-TYPE 68 112 96
'ADNP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S5367.  Gene #511: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ADNP2 MUTATED 1 1 2 2 1 3 3 1 0
ADNP2 WILD-TYPE 40 25 28 27 38 66 17 13 22
'ADNP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 0.12

Table S5368.  Gene #511: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ADNP2 MUTATED 1 8 2 4
ADNP2 WILD-TYPE 99 64 70 117

Figure S1595.  Get High-res Image Gene #511: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ADNP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S5369.  Gene #511: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ADNP2 MUTATED 0 4 7 2 2
ADNP2 WILD-TYPE 59 71 67 117 36

Figure S1596.  Get High-res Image Gene #511: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S5370.  Gene #511: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ADNP2 MUTATED 1 7 1 2 3
ADNP2 WILD-TYPE 50 69 60 69 92
'ADNP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0541 (Fisher's exact test), Q value = 0.25

Table S5371.  Gene #511: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ADNP2 MUTATED 7 0 0 2 1 1 0 1 2
ADNP2 WILD-TYPE 62 48 39 14 52 19 21 37 48
'ADNP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S5372.  Gene #511: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ADNP2 MUTATED 0 0 2 0 1 0
ADNP2 WILD-TYPE 13 16 12 11 10 9
'ADNP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S5373.  Gene #511: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ADNP2 MUTATED 0 0 0 0 2 0 1 0 0
ADNP2 WILD-TYPE 11 7 7 9 6 7 10 9 5
'IRAK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0873 (Fisher's exact test), Q value = 0.32

Table S5374.  Gene #512: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IRAK3 MUTATED 1 1 6
IRAK3 WILD-TYPE 41 172 141
'IRAK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.84

Table S5375.  Gene #512: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IRAK3 MUTATED 3 1 3
IRAK3 WILD-TYPE 59 72 72
'IRAK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S5376.  Gene #512: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IRAK3 MUTATED 1 2 4
IRAK3 WILD-TYPE 69 118 96
'IRAK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S5377.  Gene #512: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IRAK3 MUTATED 1 0 1 0 1 3 0 1 0
IRAK3 WILD-TYPE 40 26 29 29 38 66 20 13 22
'IRAK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0453 (Fisher's exact test), Q value = 0.23

Table S5378.  Gene #512: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IRAK3 MUTATED 1 5 1 1
IRAK3 WILD-TYPE 99 67 71 120

Figure S1597.  Get High-res Image Gene #512: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IRAK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S5379.  Gene #512: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IRAK3 MUTATED 1 3 3 0 1
IRAK3 WILD-TYPE 58 72 71 119 37
'IRAK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S5380.  Gene #512: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IRAK3 MUTATED 1 3 1 0 2
IRAK3 WILD-TYPE 50 73 60 71 93
'IRAK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S5381.  Gene #512: 'IRAK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IRAK3 MUTATED 1 1 1 2 0 0 0 1 1
IRAK3 WILD-TYPE 68 47 38 14 53 20 21 37 49
'KIAA0195 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.98

Table S5382.  Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIAA0195 MUTATED 1 1 1 0 0
KIAA0195 WILD-TYPE 31 17 45 27 23
'KIAA0195 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S5383.  Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIAA0195 MUTATED 1 2 0
KIAA0195 WILD-TYPE 42 65 36
'KIAA0195 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00173 (Fisher's exact test), Q value = 0.035

Table S5384.  Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA0195 MUTATED 0 3 14
KIAA0195 WILD-TYPE 42 170 133

Figure S1598.  Get High-res Image Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0195 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 0.26

Table S5385.  Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA0195 MUTATED 4 1 8
KIAA0195 WILD-TYPE 58 72 67
'KIAA0195 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 0.21

Table S5386.  Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA0195 MUTATED 2 3 10
KIAA0195 WILD-TYPE 68 117 90

Figure S1599.  Get High-res Image Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KIAA0195 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S5387.  Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA0195 MUTATED 1 0 2 1 0 8 2 0 1
KIAA0195 WILD-TYPE 40 26 28 28 39 61 18 14 21
'KIAA0195 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.18

Table S5388.  Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA0195 MUTATED 1 7 5 4
KIAA0195 WILD-TYPE 99 65 67 117

Figure S1600.  Get High-res Image Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIAA0195 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S5389.  Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA0195 MUTATED 0 1 12 3 1
KIAA0195 WILD-TYPE 59 74 62 116 37

Figure S1601.  Get High-res Image Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00618 (Fisher's exact test), Q value = 0.074

Table S5390.  Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA0195 MUTATED 1 10 2 1 2
KIAA0195 WILD-TYPE 50 66 59 70 93

Figure S1602.  Get High-res Image Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00071 (Fisher's exact test), Q value = 0.02

Table S5391.  Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA0195 MUTATED 0 5 0 4 2 2 1 1 1
KIAA0195 WILD-TYPE 69 43 39 12 51 18 20 37 49

Figure S1603.  Get High-res Image Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S5392.  Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIAA0195 MUTATED 1 1 2 0 1 0
KIAA0195 WILD-TYPE 12 15 12 11 10 9
'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S5393.  Gene #513: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIAA0195 MUTATED 0 0 0 0 1 1 2 0 1
KIAA0195 WILD-TYPE 11 7 7 9 7 6 9 9 4
'AGBL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0521 (Fisher's exact test), Q value = 0.24

Table S5394.  Gene #514: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AGBL2 MUTATED 1 0 0 3 0
AGBL2 WILD-TYPE 31 18 46 24 23
'AGBL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5395.  Gene #514: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AGBL2 MUTATED 1 2 1
AGBL2 WILD-TYPE 42 65 35
'AGBL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 0.26

Table S5396.  Gene #514: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AGBL2 MUTATED 0 4 10
AGBL2 WILD-TYPE 42 169 137
'AGBL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0733 (Fisher's exact test), Q value = 0.29

Table S5397.  Gene #514: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AGBL2 MUTATED 2 1 7
AGBL2 WILD-TYPE 60 72 68
'AGBL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S5398.  Gene #514: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AGBL2 MUTATED 2 5 2
AGBL2 WILD-TYPE 68 115 98
'AGBL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S5399.  Gene #514: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AGBL2 MUTATED 2 0 1 4 0 2 0 0 0
AGBL2 WILD-TYPE 39 26 29 25 39 67 20 14 22
'AGBL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S5400.  Gene #514: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AGBL2 MUTATED 4 5 1 4
AGBL2 WILD-TYPE 96 67 71 117
'AGBL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S5401.  Gene #514: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AGBL2 MUTATED 0 5 5 3 1
AGBL2 WILD-TYPE 59 70 69 116 37
'AGBL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00826 (Fisher's exact test), Q value = 0.085

Table S5402.  Gene #514: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AGBL2 MUTATED 1 8 0 1 2
AGBL2 WILD-TYPE 50 68 61 70 93

Figure S1604.  Get High-res Image Gene #514: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'AGBL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S5403.  Gene #514: 'AGBL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AGBL2 MUTATED 2 2 1 2 3 1 0 0 1
AGBL2 WILD-TYPE 67 46 38 14 50 19 21 38 49
'OR1J2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5404.  Gene #515: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR1J2 MUTATED 1 5 4
OR1J2 WILD-TYPE 41 168 143
'OR1J2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S5405.  Gene #515: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR1J2 MUTATED 1 5 4
OR1J2 WILD-TYPE 61 68 71
'OR1J2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.89

Table S5406.  Gene #515: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR1J2 MUTATED 1 5 3
OR1J2 WILD-TYPE 69 115 97
'OR1J2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.49

Table S5407.  Gene #515: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR1J2 MUTATED 1 3 1 2 0 1 1 0 0
OR1J2 WILD-TYPE 40 23 29 27 39 68 19 14 22
'OR1J2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00204 (Fisher's exact test), Q value = 0.038

Table S5408.  Gene #515: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR1J2 MUTATED 5 5 0 0
OR1J2 WILD-TYPE 95 67 72 121

Figure S1605.  Get High-res Image Gene #515: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR1J2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00936 (Fisher's exact test), Q value = 0.091

Table S5409.  Gene #515: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR1J2 MUTATED 2 6 2 0 0
OR1J2 WILD-TYPE 57 69 72 119 38

Figure S1606.  Get High-res Image Gene #515: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR1J2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S5410.  Gene #515: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR1J2 MUTATED 4 6 0 0 0
OR1J2 WILD-TYPE 47 70 61 71 95

Figure S1607.  Get High-res Image Gene #515: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR1J2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S5411.  Gene #515: 'OR1J2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR1J2 MUTATED 3 0 2 1 2 2 0 0 0
OR1J2 WILD-TYPE 66 48 37 15 51 18 21 38 50
'PTPRC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.14

Table S5412.  Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PTPRC MUTATED 5 0 0 1 1
PTPRC WILD-TYPE 27 18 46 26 22

Figure S1608.  Get High-res Image Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTPRC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0436 (Fisher's exact test), Q value = 0.22

Table S5413.  Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PTPRC MUTATED 5 1 1
PTPRC WILD-TYPE 38 66 35

Figure S1609.  Get High-res Image Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PTPRC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00075 (Fisher's exact test), Q value = 0.021

Table S5414.  Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTPRC MUTATED 0 6 19
PTPRC WILD-TYPE 42 167 128

Figure S1610.  Get High-res Image Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPRC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0712 (Fisher's exact test), Q value = 0.29

Table S5415.  Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTPRC MUTATED 8 2 7
PTPRC WILD-TYPE 54 71 68
'PTPRC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.044 (Fisher's exact test), Q value = 0.22

Table S5416.  Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTPRC MUTATED 4 4 12
PTPRC WILD-TYPE 66 116 88

Figure S1611.  Get High-res Image Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PTPRC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.92

Table S5417.  Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTPRC MUTATED 4 2 2 0 2 7 2 1 0
PTPRC WILD-TYPE 37 24 28 29 37 62 18 13 22
'PTPRC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0474 (Fisher's exact test), Q value = 0.23

Table S5418.  Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTPRC MUTATED 2 5 9 9
PTPRC WILD-TYPE 98 67 63 112

Figure S1612.  Get High-res Image Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTPRC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0201 (Fisher's exact test), Q value = 0.14

Table S5419.  Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTPRC MUTATED 6 3 7 3 6
PTPRC WILD-TYPE 53 72 67 116 32

Figure S1613.  Get High-res Image Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPRC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S5420.  Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTPRC MUTATED 2 8 5 1 9
PTPRC WILD-TYPE 49 68 56 70 86
'PTPRC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S5421.  Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTPRC MUTATED 3 4 1 4 3 2 2 4 2
PTPRC WILD-TYPE 66 44 38 12 50 18 19 34 48
'PTPRC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S5422.  Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PTPRC MUTATED 0 2 1 2 3 2
PTPRC WILD-TYPE 13 14 13 9 8 7
'PTPRC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S5423.  Gene #516: 'PTPRC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PTPRC MUTATED 2 1 0 1 1 1 4 0 0
PTPRC WILD-TYPE 9 6 7 8 7 6 7 9 5
'ARMCX5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S5424.  Gene #517: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ARMCX5 MUTATED 2 0 0 1 0
ARMCX5 WILD-TYPE 30 18 46 26 23
'ARMCX5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0381 (Fisher's exact test), Q value = 0.21

Table S5425.  Gene #517: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ARMCX5 MUTATED 3 0 0
ARMCX5 WILD-TYPE 40 67 36

Figure S1614.  Get High-res Image Gene #517: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARMCX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.54

Table S5426.  Gene #517: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARMCX5 MUTATED 2 2 3
ARMCX5 WILD-TYPE 40 171 144
'ARMCX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S5427.  Gene #517: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARMCX5 MUTATED 0 1 3
ARMCX5 WILD-TYPE 62 72 72
'ARMCX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S5428.  Gene #517: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARMCX5 MUTATED 1 2 4
ARMCX5 WILD-TYPE 69 118 96
'ARMCX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S5429.  Gene #517: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARMCX5 MUTATED 1 0 0 1 2 2 1 0 0
ARMCX5 WILD-TYPE 40 26 30 28 37 67 19 14 22
'ARMCX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S5430.  Gene #517: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARMCX5 MUTATED 1 2 1 3
ARMCX5 WILD-TYPE 99 70 71 118
'ARMCX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.025 (Fisher's exact test), Q value = 0.16

Table S5431.  Gene #517: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARMCX5 MUTATED 1 1 2 0 3
ARMCX5 WILD-TYPE 58 74 72 119 35

Figure S1615.  Get High-res Image Gene #517: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARMCX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.96

Table S5432.  Gene #517: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARMCX5 MUTATED 2 2 0 1 2
ARMCX5 WILD-TYPE 49 74 61 70 93
'ARMCX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0305 (Fisher's exact test), Q value = 0.18

Table S5433.  Gene #517: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARMCX5 MUTATED 1 0 1 2 0 1 0 2 0
ARMCX5 WILD-TYPE 68 48 38 14 53 19 21 36 50

Figure S1616.  Get High-res Image Gene #517: 'ARMCX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PPIG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 0.3

Table S5434.  Gene #518: 'PPIG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PPIG MUTATED 3 0 0 2 0
PPIG WILD-TYPE 29 18 46 25 23
'PPIG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0682 (Fisher's exact test), Q value = 0.28

Table S5435.  Gene #518: 'PPIG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PPIG MUTATED 4 1 0
PPIG WILD-TYPE 39 66 36
'PPIG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00174 (Fisher's exact test), Q value = 0.035

Table S5436.  Gene #518: 'PPIG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PPIG MUTATED 0 1 11
PPIG WILD-TYPE 42 172 136

Figure S1617.  Get High-res Image Gene #518: 'PPIG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PPIG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S5437.  Gene #518: 'PPIG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PPIG MUTATED 3 2 2
PPIG WILD-TYPE 59 71 73
'PPIG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S5438.  Gene #518: 'PPIG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PPIG MUTATED 0 6 5
PPIG WILD-TYPE 70 114 95
'PPIG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.094 (Fisher's exact test), Q value = 0.33

Table S5439.  Gene #518: 'PPIG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PPIG MUTATED 0 1 2 0 0 5 1 2 0
PPIG WILD-TYPE 41 25 28 29 39 64 19 12 22
'PPIG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.63

Table S5440.  Gene #518: 'PPIG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PPIG MUTATED 2 5 1 4
PPIG WILD-TYPE 98 67 71 117
'PPIG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S5441.  Gene #518: 'PPIG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PPIG MUTATED 0 3 4 1 4
PPIG WILD-TYPE 59 72 70 118 34

Figure S1618.  Get High-res Image Gene #518: 'PPIG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPIG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S5442.  Gene #518: 'PPIG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PPIG MUTATED 1 4 0 1 4
PPIG WILD-TYPE 50 72 61 70 91
'PPIG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S5443.  Gene #518: 'PPIG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PPIG MUTATED 1 1 1 2 0 2 1 1 1
PPIG WILD-TYPE 68 47 38 14 53 18 20 37 49
'PPIG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.28

Table S5444.  Gene #518: 'PPIG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PPIG MUTATED 2 0 0 0 2 0
PPIG WILD-TYPE 11 16 14 11 9 9
'PPIG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.89

Table S5445.  Gene #518: 'PPIG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PPIG MUTATED 0 0 0 2 0 0 1 1 0
PPIG WILD-TYPE 11 7 7 7 8 7 10 8 5
'NFASC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 0.21

Table S5446.  Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NFASC MUTATED 7 1 1 2 1
NFASC WILD-TYPE 25 17 45 25 22

Figure S1619.  Get High-res Image Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NFASC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0421 (Fisher's exact test), Q value = 0.22

Table S5447.  Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NFASC MUTATED 7 2 3
NFASC WILD-TYPE 36 65 33

Figure S1620.  Get High-res Image Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NFASC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00163 (Fisher's exact test), Q value = 0.034

Table S5448.  Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NFASC MUTATED 2 7 22
NFASC WILD-TYPE 40 166 125

Figure S1621.  Get High-res Image Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NFASC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.96

Table S5449.  Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NFASC MUTATED 7 5 7
NFASC WILD-TYPE 55 68 68
'NFASC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.2

Table S5450.  Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NFASC MUTATED 3 8 15
NFASC WILD-TYPE 67 112 85

Figure S1622.  Get High-res Image Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NFASC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S5451.  Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NFASC MUTATED 4 0 2 3 5 9 3 0 0
NFASC WILD-TYPE 37 26 28 26 34 60 17 14 22
'NFASC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S5452.  Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NFASC MUTATED 6 7 5 14
NFASC WILD-TYPE 94 65 67 107
'NFASC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00584 (Fisher's exact test), Q value = 0.072

Table S5453.  Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NFASC MUTATED 1 8 9 6 8
NFASC WILD-TYPE 58 67 65 113 30

Figure S1623.  Get High-res Image Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NFASC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0835 (Fisher's exact test), Q value = 0.31

Table S5454.  Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NFASC MUTATED 1 11 4 4 11
NFASC WILD-TYPE 50 65 57 67 84
'NFASC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.78

Table S5455.  Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NFASC MUTATED 4 5 1 3 4 2 2 6 4
NFASC WILD-TYPE 65 43 38 13 49 18 19 32 46
'NFASC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S5456.  Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NFASC MUTATED 1 0 0 0 2 1
NFASC WILD-TYPE 12 16 14 11 9 8
'NFASC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S5457.  Gene #519: 'NFASC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NFASC MUTATED 0 0 0 1 0 1 1 1 0
NFASC WILD-TYPE 11 7 7 8 8 6 10 8 5
'PLCH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S5458.  Gene #520: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PLCH2 MUTATED 2 7 10
PLCH2 WILD-TYPE 40 166 137
'PLCH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S5459.  Gene #520: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PLCH2 MUTATED 5 7 6
PLCH2 WILD-TYPE 57 66 69
'PLCH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.95

Table S5460.  Gene #520: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PLCH2 MUTATED 4 5 7
PLCH2 WILD-TYPE 66 115 93
'PLCH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S5461.  Gene #520: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PLCH2 MUTATED 4 0 1 1 0 6 1 0 3
PLCH2 WILD-TYPE 37 26 29 28 39 63 19 14 19
'PLCH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S5462.  Gene #520: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PLCH2 MUTATED 5 7 6 1
PLCH2 WILD-TYPE 95 65 66 120

Figure S1624.  Get High-res Image Gene #520: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PLCH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.01

Table S5463.  Gene #520: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PLCH2 MUTATED 6 3 9 0 1
PLCH2 WILD-TYPE 53 72 65 119 37

Figure S1625.  Get High-res Image Gene #520: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PLCH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.18

Table S5464.  Gene #520: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PLCH2 MUTATED 3 6 7 2 1
PLCH2 WILD-TYPE 48 70 54 69 94

Figure S1626.  Get High-res Image Gene #520: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PLCH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 0.21

Table S5465.  Gene #520: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PLCH2 MUTATED 7 4 0 2 4 1 1 0 0
PLCH2 WILD-TYPE 62 44 39 14 49 19 20 38 50

Figure S1627.  Get High-res Image Gene #520: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PLCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S5466.  Gene #520: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PLCH2 MUTATED 3 2 1 1 1 2
PLCH2 WILD-TYPE 10 14 13 10 10 7
'PLCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S5467.  Gene #520: 'PLCH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PLCH2 MUTATED 2 1 2 2 0 0 1 1 1
PLCH2 WILD-TYPE 9 6 5 7 8 7 10 8 4
'MTDH MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5468.  Gene #521: 'MTDH MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MTDH MUTATED 1 0 1 1 0
MTDH WILD-TYPE 31 18 45 26 23
'MTDH MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S5469.  Gene #521: 'MTDH MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MTDH MUTATED 1 2 0
MTDH WILD-TYPE 42 65 36
'MTDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S5470.  Gene #521: 'MTDH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MTDH MUTATED 1 3 8
MTDH WILD-TYPE 41 170 139
'MTDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S5471.  Gene #521: 'MTDH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MTDH MUTATED 2 2 5
MTDH WILD-TYPE 60 71 70
'MTDH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S5472.  Gene #521: 'MTDH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MTDH MUTATED 1 5 3
MTDH WILD-TYPE 69 115 97
'MTDH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S5473.  Gene #521: 'MTDH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MTDH MUTATED 2 1 1 2 0 3 0 0 0
MTDH WILD-TYPE 39 25 29 27 39 66 20 14 22
'MTDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S5474.  Gene #521: 'MTDH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MTDH MUTATED 2 4 3 3
MTDH WILD-TYPE 98 68 69 118
'MTDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0346 (Fisher's exact test), Q value = 0.2

Table S5475.  Gene #521: 'MTDH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MTDH MUTATED 3 0 6 2 1
MTDH WILD-TYPE 56 75 68 117 37

Figure S1628.  Get High-res Image Gene #521: 'MTDH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MTDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S5476.  Gene #521: 'MTDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MTDH MUTATED 0 4 3 2 3
MTDH WILD-TYPE 51 72 58 69 92
'MTDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0926 (Fisher's exact test), Q value = 0.33

Table S5477.  Gene #521: 'MTDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MTDH MUTATED 2 4 0 2 0 1 0 2 1
MTDH WILD-TYPE 67 44 39 14 53 19 21 36 49
'MTDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 0.24

Table S5478.  Gene #521: 'MTDH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MTDH MUTATED 0 0 0 0 2 1
MTDH WILD-TYPE 13 16 14 11 9 8
'MTDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S5479.  Gene #521: 'MTDH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MTDH MUTATED 0 0 0 1 0 0 1 1 0
MTDH WILD-TYPE 11 7 7 8 8 7 10 8 5
'RGS22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0015 (Fisher's exact test), Q value = 0.032

Table S5480.  Gene #522: 'RGS22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RGS22 MUTATED 2 4 18
RGS22 WILD-TYPE 40 169 129

Figure S1629.  Get High-res Image Gene #522: 'RGS22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RGS22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.096

Table S5481.  Gene #522: 'RGS22 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RGS22 MUTATED 11 2 9
RGS22 WILD-TYPE 51 71 66

Figure S1630.  Get High-res Image Gene #522: 'RGS22 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RGS22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S5482.  Gene #522: 'RGS22 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RGS22 MUTATED 2 9 10
RGS22 WILD-TYPE 68 111 90
'RGS22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 0.93

Table S5483.  Gene #522: 'RGS22 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RGS22 MUTATED 2 2 1 3 2 8 1 2 0
RGS22 WILD-TYPE 39 24 29 26 37 61 19 12 22
'RGS22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.017

Table S5484.  Gene #522: 'RGS22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RGS22 MUTATED 2 10 9 3
RGS22 WILD-TYPE 98 62 63 118

Figure S1631.  Get High-res Image Gene #522: 'RGS22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RGS22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S5485.  Gene #522: 'RGS22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RGS22 MUTATED 3 3 15 2 1
RGS22 WILD-TYPE 56 72 59 117 37

Figure S1632.  Get High-res Image Gene #522: 'RGS22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RGS22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S5486.  Gene #522: 'RGS22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RGS22 MUTATED 3 11 5 1 3
RGS22 WILD-TYPE 48 65 56 70 92

Figure S1633.  Get High-res Image Gene #522: 'RGS22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RGS22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S5487.  Gene #522: 'RGS22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RGS22 MUTATED 5 7 1 4 2 2 0 0 2
RGS22 WILD-TYPE 64 41 38 12 51 18 21 38 48

Figure S1634.  Get High-res Image Gene #522: 'RGS22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RGS22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.25

Table S5488.  Gene #522: 'RGS22 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RGS22 MUTATED 0 1 1 1 4 0
RGS22 WILD-TYPE 13 15 13 10 7 9
'RGS22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.34

Table S5489.  Gene #522: 'RGS22 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RGS22 MUTATED 1 0 0 3 0 0 3 0 0
RGS22 WILD-TYPE 10 7 7 6 8 7 8 9 5
'DMRTB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S5490.  Gene #523: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DMRTB1 MUTATED 1 1 4
DMRTB1 WILD-TYPE 41 172 143
'DMRTB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.93

Table S5491.  Gene #523: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DMRTB1 MUTATED 1 1 3
DMRTB1 WILD-TYPE 61 72 72
'DMRTB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 0.32

Table S5492.  Gene #523: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DMRTB1 MUTATED 2 0 3
DMRTB1 WILD-TYPE 68 120 97
'DMRTB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 0.94

Table S5493.  Gene #523: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DMRTB1 MUTATED 0 0 0 0 2 3 0 0 0
DMRTB1 WILD-TYPE 41 26 30 29 37 66 20 14 22
'DMRTB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S5494.  Gene #523: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DMRTB1 MUTATED 0 2 2 2
DMRTB1 WILD-TYPE 100 70 70 119
'DMRTB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0852 (Fisher's exact test), Q value = 0.32

Table S5495.  Gene #523: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DMRTB1 MUTATED 0 0 4 2 0
DMRTB1 WILD-TYPE 59 75 70 117 38
'DMRTB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S5496.  Gene #523: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DMRTB1 MUTATED 0 3 1 2 0
DMRTB1 WILD-TYPE 51 73 60 69 95
'DMRTB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S5497.  Gene #523: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DMRTB1 MUTATED 1 2 0 1 0 0 0 0 2
DMRTB1 WILD-TYPE 68 46 39 15 53 20 21 38 48
'MAP3K4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.011

Table S5498.  Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MAP3K4 MUTATED 9 0 1 1 0
MAP3K4 WILD-TYPE 23 18 45 26 23

Figure S1635.  Get High-res Image Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MAP3K4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00241 (Fisher's exact test), Q value = 0.042

Table S5499.  Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MAP3K4 MUTATED 8 1 2
MAP3K4 WILD-TYPE 35 66 34

Figure S1636.  Get High-res Image Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MAP3K4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S5500.  Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAP3K4 MUTATED 5 4 26
MAP3K4 WILD-TYPE 37 169 121

Figure S1637.  Get High-res Image Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP3K4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S5501.  Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAP3K4 MUTATED 10 4 7
MAP3K4 WILD-TYPE 52 69 68
'MAP3K4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S5502.  Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAP3K4 MUTATED 7 11 12
MAP3K4 WILD-TYPE 63 109 88
'MAP3K4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S5503.  Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAP3K4 MUTATED 3 5 2 3 5 8 2 1 1
MAP3K4 WILD-TYPE 38 21 28 26 34 61 18 13 21
'MAP3K4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S5504.  Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAP3K4 MUTATED 5 7 10 14
MAP3K4 WILD-TYPE 95 65 62 107
'MAP3K4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00153 (Fisher's exact test), Q value = 0.032

Table S5505.  Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAP3K4 MUTATED 5 5 11 5 10
MAP3K4 WILD-TYPE 54 70 63 114 28

Figure S1638.  Get High-res Image Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP3K4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.37

Table S5506.  Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAP3K4 MUTATED 1 8 7 5 14
MAP3K4 WILD-TYPE 50 68 54 66 81
'MAP3K4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.11

Table S5507.  Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAP3K4 MUTATED 5 6 1 2 5 0 2 11 3
MAP3K4 WILD-TYPE 64 42 38 14 48 20 19 27 47

Figure S1639.  Get High-res Image Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP3K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 0.29

Table S5508.  Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAP3K4 MUTATED 0 1 3 0 3 0
MAP3K4 WILD-TYPE 13 15 11 11 8 9
'MAP3K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S5509.  Gene #524: 'MAP3K4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAP3K4 MUTATED 0 0 0 2 1 1 3 0 0
MAP3K4 WILD-TYPE 11 7 7 7 7 6 8 9 5
'PNPLA8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.34

Table S5510.  Gene #525: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PNPLA8 MUTATED 3 0 0 1 0
PNPLA8 WILD-TYPE 29 18 46 26 23
'PNPLA8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.095

Table S5511.  Gene #525: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PNPLA8 MUTATED 4 0 0
PNPLA8 WILD-TYPE 39 67 36

Figure S1640.  Get High-res Image Gene #525: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PNPLA8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.095

Table S5512.  Gene #525: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PNPLA8 MUTATED 2 3 13
PNPLA8 WILD-TYPE 40 170 134

Figure S1641.  Get High-res Image Gene #525: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PNPLA8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S5513.  Gene #525: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PNPLA8 MUTATED 6 2 7
PNPLA8 WILD-TYPE 56 71 68
'PNPLA8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S5514.  Gene #525: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PNPLA8 MUTATED 1 6 7
PNPLA8 WILD-TYPE 69 114 93
'PNPLA8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.82

Table S5515.  Gene #525: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PNPLA8 MUTATED 2 1 1 0 3 5 0 2 0
PNPLA8 WILD-TYPE 39 25 29 29 36 64 20 12 22
'PNPLA8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S5516.  Gene #525: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PNPLA8 MUTATED 4 5 5 4
PNPLA8 WILD-TYPE 96 67 67 117
'PNPLA8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00217 (Fisher's exact test), Q value = 0.039

Table S5517.  Gene #525: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PNPLA8 MUTATED 2 6 6 0 4
PNPLA8 WILD-TYPE 57 69 68 119 34

Figure S1642.  Get High-res Image Gene #525: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PNPLA8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S5518.  Gene #525: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PNPLA8 MUTATED 2 7 3 1 4
PNPLA8 WILD-TYPE 49 69 58 70 91
'PNPLA8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S5519.  Gene #525: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PNPLA8 MUTATED 4 6 1 1 1 0 0 3 1
PNPLA8 WILD-TYPE 65 42 38 15 52 20 21 35 49
'PNPLA8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.19

Table S5520.  Gene #525: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PNPLA8 MUTATED 0 1 0 0 3 0
PNPLA8 WILD-TYPE 13 15 14 11 8 9

Figure S1643.  Get High-res Image Gene #525: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PNPLA8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S5521.  Gene #525: 'PNPLA8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PNPLA8 MUTATED 0 0 0 1 0 1 2 0 0
PNPLA8 WILD-TYPE 11 7 7 8 8 6 9 9 5
'ALX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.095

Table S5522.  Gene #526: 'ALX4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ALX4 MUTATED 1 1 9
ALX4 WILD-TYPE 41 172 138

Figure S1644.  Get High-res Image Gene #526: 'ALX4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ALX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 0.3

Table S5523.  Gene #526: 'ALX4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ALX4 MUTATED 2 1 7
ALX4 WILD-TYPE 60 72 68
'ALX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.61

Table S5524.  Gene #526: 'ALX4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ALX4 MUTATED 1 3 6
ALX4 WILD-TYPE 69 117 94
'ALX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S5525.  Gene #526: 'ALX4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ALX4 MUTATED 0 0 0 2 1 5 2 0 0
ALX4 WILD-TYPE 41 26 30 27 38 64 18 14 22
'ALX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00388 (Fisher's exact test), Q value = 0.056

Table S5526.  Gene #526: 'ALX4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ALX4 MUTATED 1 7 2 1
ALX4 WILD-TYPE 99 65 70 120

Figure S1645.  Get High-res Image Gene #526: 'ALX4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ALX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S5527.  Gene #526: 'ALX4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ALX4 MUTATED 1 0 9 0 1
ALX4 WILD-TYPE 58 75 65 119 37

Figure S1646.  Get High-res Image Gene #526: 'ALX4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ALX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0079

Table S5528.  Gene #526: 'ALX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ALX4 MUTATED 1 9 0 0 1
ALX4 WILD-TYPE 50 67 61 71 94

Figure S1647.  Get High-res Image Gene #526: 'ALX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ALX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00228 (Fisher's exact test), Q value = 0.04

Table S5529.  Gene #526: 'ALX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ALX4 MUTATED 2 3 0 4 1 0 1 0 0
ALX4 WILD-TYPE 67 45 39 12 52 20 20 38 50

Figure S1648.  Get High-res Image Gene #526: 'ALX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ALX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00683 (Fisher's exact test), Q value = 0.077

Table S5530.  Gene #526: 'ALX4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ALX4 MUTATED 0 0 0 0 3 0
ALX4 WILD-TYPE 13 16 14 11 8 9

Figure S1649.  Get High-res Image Gene #526: 'ALX4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ALX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S5531.  Gene #526: 'ALX4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ALX4 MUTATED 0 0 0 2 0 0 1 0 0
ALX4 WILD-TYPE 11 7 7 7 8 7 10 9 5
'ULK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S5532.  Gene #527: 'ULK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ULK1 MUTATED 1 2 7
ULK1 WILD-TYPE 41 171 140
'ULK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.13

Table S5533.  Gene #527: 'ULK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ULK1 MUTATED 3 0 7
ULK1 WILD-TYPE 59 73 68

Figure S1650.  Get High-res Image Gene #527: 'ULK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ULK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S5534.  Gene #527: 'ULK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ULK1 MUTATED 0 4 5
ULK1 WILD-TYPE 70 116 95
'ULK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.21

Table S5535.  Gene #527: 'ULK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ULK1 MUTATED 0 0 0 2 0 4 3 0 0
ULK1 WILD-TYPE 41 26 30 27 39 65 17 14 22

Figure S1651.  Get High-res Image Gene #527: 'ULK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ULK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.012

Table S5536.  Gene #527: 'ULK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ULK1 MUTATED 1 7 2 0
ULK1 WILD-TYPE 99 65 70 121

Figure S1652.  Get High-res Image Gene #527: 'ULK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ULK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0016 (Fisher's exact test), Q value = 0.033

Table S5537.  Gene #527: 'ULK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ULK1 MUTATED 2 1 7 0 0
ULK1 WILD-TYPE 57 74 67 119 38

Figure S1653.  Get High-res Image Gene #527: 'ULK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ULK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00156 (Fisher's exact test), Q value = 0.033

Table S5538.  Gene #527: 'ULK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ULK1 MUTATED 1 7 2 0 0
ULK1 WILD-TYPE 50 69 59 71 95

Figure S1654.  Get High-res Image Gene #527: 'ULK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ULK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00983 (Fisher's exact test), Q value = 0.093

Table S5539.  Gene #527: 'ULK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ULK1 MUTATED 1 3 0 3 3 0 0 0 0
ULK1 WILD-TYPE 68 45 39 13 50 20 21 38 50

Figure S1655.  Get High-res Image Gene #527: 'ULK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'POLM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 0.17

Table S5540.  Gene #528: 'POLM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
POLM MUTATED 0 2 9
POLM WILD-TYPE 42 171 138

Figure S1656.  Get High-res Image Gene #528: 'POLM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'POLM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S5541.  Gene #528: 'POLM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
POLM MUTATED 3 1 6
POLM WILD-TYPE 59 72 69
'POLM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S5542.  Gene #528: 'POLM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
POLM MUTATED 1 4 5
POLM WILD-TYPE 69 116 95
'POLM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S5543.  Gene #528: 'POLM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
POLM MUTATED 0 1 1 2 0 5 1 0 0
POLM WILD-TYPE 41 25 29 27 39 64 19 14 22
'POLM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S5544.  Gene #528: 'POLM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
POLM MUTATED 1 6 3 1
POLM WILD-TYPE 99 66 69 120

Figure S1657.  Get High-res Image Gene #528: 'POLM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'POLM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00565 (Fisher's exact test), Q value = 0.071

Table S5545.  Gene #528: 'POLM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
POLM MUTATED 0 3 7 1 0
POLM WILD-TYPE 59 72 67 118 38

Figure S1658.  Get High-res Image Gene #528: 'POLM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'POLM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 0.2

Table S5546.  Gene #528: 'POLM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
POLM MUTATED 1 7 1 1 1
POLM WILD-TYPE 50 69 60 70 94

Figure S1659.  Get High-res Image Gene #528: 'POLM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'POLM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.14

Table S5547.  Gene #528: 'POLM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
POLM MUTATED 2 3 0 3 0 1 1 0 1
POLM WILD-TYPE 67 45 39 13 53 19 20 38 49

Figure S1660.  Get High-res Image Gene #528: 'POLM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HIST1H1C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0933 (Fisher's exact test), Q value = 0.33

Table S5548.  Gene #529: 'HIST1H1C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HIST1H1C MUTATED 1 0 3
HIST1H1C WILD-TYPE 41 173 144
'HIST1H1C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S5549.  Gene #529: 'HIST1H1C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HIST1H1C MUTATED 1 0 2
HIST1H1C WILD-TYPE 61 73 73
'HIST1H1C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S5550.  Gene #529: 'HIST1H1C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HIST1H1C MUTATED 0 3 0
HIST1H1C WILD-TYPE 70 117 100
'HIST1H1C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0602 (Fisher's exact test), Q value = 0.26

Table S5551.  Gene #529: 'HIST1H1C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HIST1H1C MUTATED 0 2 0 1 0 0 0 0 0
HIST1H1C WILD-TYPE 41 24 30 28 39 69 20 14 22
'HIST1H1C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S5552.  Gene #529: 'HIST1H1C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HIST1H1C MUTATED 0 1 1 2
HIST1H1C WILD-TYPE 100 71 71 119
'HIST1H1C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5553.  Gene #529: 'HIST1H1C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HIST1H1C MUTATED 0 1 1 2 0
HIST1H1C WILD-TYPE 59 74 73 117 38
'HIST1H1C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S5554.  Gene #529: 'HIST1H1C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HIST1H1C MUTATED 1 0 1 0 2
HIST1H1C WILD-TYPE 50 76 60 71 93
'HIST1H1C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.88

Table S5555.  Gene #529: 'HIST1H1C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HIST1H1C MUTATED 0 1 0 0 1 1 0 0 1
HIST1H1C WILD-TYPE 69 47 39 16 52 19 21 38 49
'TGFBR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S5556.  Gene #530: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TGFBR1 MUTATED 2 0 0 2 0
TGFBR1 WILD-TYPE 30 18 46 25 23
'TGFBR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S5557.  Gene #530: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TGFBR1 MUTATED 3 1 0
TGFBR1 WILD-TYPE 40 66 36
'TGFBR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00337 (Fisher's exact test), Q value = 0.051

Table S5558.  Gene #530: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TGFBR1 MUTATED 0 2 12
TGFBR1 WILD-TYPE 42 171 135

Figure S1661.  Get High-res Image Gene #530: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TGFBR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S5559.  Gene #530: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TGFBR1 MUTATED 3 1 6
TGFBR1 WILD-TYPE 59 72 69
'TGFBR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S5560.  Gene #530: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TGFBR1 MUTATED 2 4 7
TGFBR1 WILD-TYPE 68 116 93
'TGFBR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S5561.  Gene #530: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TGFBR1 MUTATED 3 1 1 0 1 6 0 0 1
TGFBR1 WILD-TYPE 38 25 29 29 38 63 20 14 21
'TGFBR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S5562.  Gene #530: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TGFBR1 MUTATED 0 6 4 4
TGFBR1 WILD-TYPE 100 66 68 117

Figure S1662.  Get High-res Image Gene #530: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TGFBR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S5563.  Gene #530: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TGFBR1 MUTATED 3 1 6 1 3
TGFBR1 WILD-TYPE 56 74 68 118 35

Figure S1663.  Get High-res Image Gene #530: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TGFBR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S5564.  Gene #530: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TGFBR1 MUTATED 1 4 2 1 4
TGFBR1 WILD-TYPE 50 72 59 70 91
'TGFBR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S5565.  Gene #530: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TGFBR1 MUTATED 3 2 0 2 1 1 0 2 1
TGFBR1 WILD-TYPE 66 46 39 14 52 19 21 36 49
'CIC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.25

Table S5566.  Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CIC MUTATED 3 0 0 0 0
CIC WILD-TYPE 29 18 46 27 23
'CIC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0379 (Fisher's exact test), Q value = 0.21

Table S5567.  Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CIC MUTATED 3 0 0
CIC WILD-TYPE 40 67 36

Figure S1664.  Get High-res Image Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S5568.  Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CIC MUTATED 0 3 20
CIC WILD-TYPE 42 170 127

Figure S1665.  Get High-res Image Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CIC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.21

Table S5569.  Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CIC MUTATED 9 2 8
CIC WILD-TYPE 53 71 67

Figure S1666.  Get High-res Image Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CIC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.02

Table S5570.  Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CIC MUTATED 0 6 14
CIC WILD-TYPE 70 114 86

Figure S1667.  Get High-res Image Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CIC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.24

Table S5571.  Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CIC MUTATED 1 1 1 2 1 12 2 0 0
CIC WILD-TYPE 40 25 29 27 38 57 18 14 22

Figure S1668.  Get High-res Image Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00222 (Fisher's exact test), Q value = 0.04

Table S5572.  Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CIC MUTATED 2 11 6 4
CIC WILD-TYPE 98 61 66 117

Figure S1669.  Get High-res Image Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CIC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S5573.  Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CIC MUTATED 2 2 15 0 4
CIC WILD-TYPE 57 73 59 119 34

Figure S1670.  Get High-res Image Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S5574.  Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CIC MUTATED 0 15 3 0 5
CIC WILD-TYPE 51 61 58 71 90

Figure S1671.  Get High-res Image Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CIC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00297 (Fisher's exact test), Q value = 0.047

Table S5575.  Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CIC MUTATED 4 5 1 6 1 1 1 3 1
CIC WILD-TYPE 65 43 38 10 52 19 20 35 49

Figure S1672.  Get High-res Image Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.28

Table S5576.  Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CIC MUTATED 0 0 2 1 3 0
CIC WILD-TYPE 13 16 12 10 8 9
'CIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.63

Table S5577.  Gene #531: 'CIC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CIC MUTATED 0 0 1 1 0 1 3 0 0
CIC WILD-TYPE 11 7 6 8 8 6 8 9 5
'FBXO21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.19

Table S5578.  Gene #532: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FBXO21 MUTATED 1 0 5
FBXO21 WILD-TYPE 41 173 142

Figure S1673.  Get High-res Image Gene #532: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FBXO21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S5579.  Gene #532: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FBXO21 MUTATED 1 0 3
FBXO21 WILD-TYPE 61 73 72
'FBXO21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S5580.  Gene #532: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FBXO21 MUTATED 0 1 4
FBXO21 WILD-TYPE 70 119 96
'FBXO21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S5581.  Gene #532: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FBXO21 MUTATED 0 0 0 1 0 3 1 0 0
FBXO21 WILD-TYPE 41 26 30 28 39 66 19 14 22
'FBXO21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S5582.  Gene #532: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FBXO21 MUTATED 0 3 1 2
FBXO21 WILD-TYPE 100 69 71 119
'FBXO21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0535 (Fisher's exact test), Q value = 0.25

Table S5583.  Gene #532: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FBXO21 MUTATED 0 0 4 1 1
FBXO21 WILD-TYPE 59 75 70 118 37
'FBXO21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.75

Table S5584.  Gene #532: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FBXO21 MUTATED 0 3 1 0 2
FBXO21 WILD-TYPE 51 73 60 71 93
'FBXO21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00085 (Fisher's exact test), Q value = 0.022

Table S5585.  Gene #532: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FBXO21 MUTATED 0 1 0 3 0 0 1 1 0
FBXO21 WILD-TYPE 69 47 39 13 53 20 20 37 50

Figure S1674.  Get High-res Image Gene #532: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PI4K2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.96

Table S5586.  Gene #533: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PI4K2B MUTATED 0 6 4
PI4K2B WILD-TYPE 42 167 143
'PI4K2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S5587.  Gene #533: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PI4K2B MUTATED 2 4 3
PI4K2B WILD-TYPE 60 69 72
'PI4K2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S5588.  Gene #533: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PI4K2B MUTATED 4 3 2
PI4K2B WILD-TYPE 66 117 98
'PI4K2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S5589.  Gene #533: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PI4K2B MUTATED 4 1 1 1 0 2 0 0 0
PI4K2B WILD-TYPE 37 25 29 28 39 67 20 14 22
'PI4K2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S5590.  Gene #533: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PI4K2B MUTATED 6 1 2 1
PI4K2B WILD-TYPE 94 71 70 120
'PI4K2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0719 (Fisher's exact test), Q value = 0.29

Table S5591.  Gene #533: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PI4K2B MUTATED 2 4 3 0 1
PI4K2B WILD-TYPE 57 71 71 119 37
'PI4K2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.58

Table S5592.  Gene #533: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PI4K2B MUTATED 3 4 1 1 1
PI4K2B WILD-TYPE 48 72 60 70 94
'PI4K2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S5593.  Gene #533: 'PI4K2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PI4K2B MUTATED 4 2 0 1 1 1 0 1 0
PI4K2B WILD-TYPE 65 46 39 15 52 19 21 37 50
'OLR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S5594.  Gene #534: 'OLR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OLR1 MUTATED 0 5 4
OLR1 WILD-TYPE 42 168 143
'OLR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S5595.  Gene #534: 'OLR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OLR1 MUTATED 2 2 4
OLR1 WILD-TYPE 60 71 71
'OLR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5596.  Gene #534: 'OLR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OLR1 MUTATED 2 4 3
OLR1 WILD-TYPE 68 116 97
'OLR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.78

Table S5597.  Gene #534: 'OLR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OLR1 MUTATED 2 0 1 3 0 3 0 0 0
OLR1 WILD-TYPE 39 26 29 26 39 66 20 14 22
'OLR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S5598.  Gene #534: 'OLR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OLR1 MUTATED 3 3 1 2
OLR1 WILD-TYPE 97 69 71 119
'OLR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0748 (Fisher's exact test), Q value = 0.3

Table S5599.  Gene #534: 'OLR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OLR1 MUTATED 0 2 5 1 1
OLR1 WILD-TYPE 59 73 69 118 37
'OLR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.94

Table S5600.  Gene #534: 'OLR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OLR1 MUTATED 2 3 2 1 1
OLR1 WILD-TYPE 49 73 59 70 94
'OLR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S5601.  Gene #534: 'OLR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OLR1 MUTATED 2 3 0 0 3 0 0 1 0
OLR1 WILD-TYPE 67 45 39 16 50 20 21 37 50
'OLR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.96

Table S5602.  Gene #534: 'OLR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OLR1 MUTATED 0 1 0 1 1 1
OLR1 WILD-TYPE 13 15 14 10 10 8
'OLR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.99

Table S5603.  Gene #534: 'OLR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OLR1 MUTATED 0 0 0 1 0 0 2 1 0
OLR1 WILD-TYPE 11 7 7 8 8 7 9 8 5
'CCDC160 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S5604.  Gene #535: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CCDC160 MUTATED 2 0 1 1 0
CCDC160 WILD-TYPE 30 18 45 26 23
'CCDC160 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 0.8

Table S5605.  Gene #535: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CCDC160 MUTATED 1 1 2
CCDC160 WILD-TYPE 42 66 34
'CCDC160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00824 (Fisher's exact test), Q value = 0.085

Table S5606.  Gene #535: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCDC160 MUTATED 0 1 9
CCDC160 WILD-TYPE 42 172 138

Figure S1675.  Get High-res Image Gene #535: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0802 (Fisher's exact test), Q value = 0.31

Table S5607.  Gene #535: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCDC160 MUTATED 1 0 4
CCDC160 WILD-TYPE 61 73 71
'CCDC160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S5608.  Gene #535: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCDC160 MUTATED 1 2 6
CCDC160 WILD-TYPE 69 118 94
'CCDC160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S5609.  Gene #535: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCDC160 MUTATED 0 0 2 0 1 6 0 0 0
CCDC160 WILD-TYPE 41 26 28 29 38 63 20 14 22
'CCDC160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S5610.  Gene #535: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCDC160 MUTATED 1 4 1 4
CCDC160 WILD-TYPE 99 68 71 117
'CCDC160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0688 (Fisher's exact test), Q value = 0.28

Table S5611.  Gene #535: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCDC160 MUTATED 0 0 5 4 1
CCDC160 WILD-TYPE 59 75 69 115 37
'CCDC160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S5612.  Gene #535: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCDC160 MUTATED 0 5 0 2 3
CCDC160 WILD-TYPE 51 71 61 69 92
'CCDC160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S5613.  Gene #535: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCDC160 MUTATED 3 0 0 2 1 1 1 1 1
CCDC160 WILD-TYPE 66 48 39 14 52 19 20 37 49
'RNF111 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.18

Table S5614.  Gene #536: 'RNF111 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RNF111 MUTATED 4 0 0 1 0
RNF111 WILD-TYPE 28 18 46 26 23

Figure S1676.  Get High-res Image Gene #536: 'RNF111 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RNF111 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00262 (Fisher's exact test), Q value = 0.044

Table S5615.  Gene #536: 'RNF111 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RNF111 MUTATED 5 0 0
RNF111 WILD-TYPE 38 67 36

Figure S1677.  Get High-res Image Gene #536: 'RNF111 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RNF111 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S5616.  Gene #536: 'RNF111 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RNF111 MUTATED 1 2 10
RNF111 WILD-TYPE 41 171 137

Figure S1678.  Get High-res Image Gene #536: 'RNF111 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNF111 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S5617.  Gene #536: 'RNF111 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RNF111 MUTATED 4 3 3
RNF111 WILD-TYPE 58 70 72
'RNF111 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.27

Table S5618.  Gene #536: 'RNF111 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RNF111 MUTATED 1 4 9
RNF111 WILD-TYPE 69 116 91
'RNF111 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.94

Table S5619.  Gene #536: 'RNF111 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RNF111 MUTATED 1 1 0 2 3 6 1 0 0
RNF111 WILD-TYPE 40 25 30 27 36 63 19 14 22
'RNF111 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S5620.  Gene #536: 'RNF111 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RNF111 MUTATED 3 3 3 5
RNF111 WILD-TYPE 97 69 69 116
'RNF111 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00114 (Fisher's exact test), Q value = 0.027

Table S5621.  Gene #536: 'RNF111 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RNF111 MUTATED 1 5 3 0 5
RNF111 WILD-TYPE 58 70 71 119 33

Figure S1679.  Get High-res Image Gene #536: 'RNF111 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RNF111 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.74

Table S5622.  Gene #536: 'RNF111 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RNF111 MUTATED 1 5 1 1 5
RNF111 WILD-TYPE 50 71 60 70 90
'RNF111 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S5623.  Gene #536: 'RNF111 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RNF111 MUTATED 3 3 0 0 2 1 0 3 1
RNF111 WILD-TYPE 66 45 39 16 51 19 21 35 49
'RBM19 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00797 (Fisher's exact test), Q value = 0.084

Table S5624.  Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RBM19 MUTATED 5 0 0 1 0
RBM19 WILD-TYPE 27 18 46 26 23

Figure S1680.  Get High-res Image Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RBM19 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00074 (Fisher's exact test), Q value = 0.021

Table S5625.  Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RBM19 MUTATED 6 0 0
RBM19 WILD-TYPE 37 67 36

Figure S1681.  Get High-res Image Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RBM19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 0.24

Table S5626.  Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RBM19 MUTATED 1 6 14
RBM19 WILD-TYPE 41 167 133

Figure S1682.  Get High-res Image Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBM19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S5627.  Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RBM19 MUTATED 4 6 5
RBM19 WILD-TYPE 58 67 70
'RBM19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00437 (Fisher's exact test), Q value = 0.06

Table S5628.  Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RBM19 MUTATED 3 2 12
RBM19 WILD-TYPE 67 118 88

Figure S1683.  Get High-res Image Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RBM19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S5629.  Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RBM19 MUTATED 3 0 0 1 2 9 1 1 0
RBM19 WILD-TYPE 38 26 30 28 37 60 19 13 22
'RBM19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S5630.  Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RBM19 MUTATED 6 3 6 6
RBM19 WILD-TYPE 94 69 66 115
'RBM19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0048 (Fisher's exact test), Q value = 0.064

Table S5631.  Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RBM19 MUTATED 2 6 7 1 5
RBM19 WILD-TYPE 57 69 67 118 33

Figure S1684.  Get High-res Image Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBM19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S5632.  Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RBM19 MUTATED 5 4 3 1 7
RBM19 WILD-TYPE 46 72 58 70 88
'RBM19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S5633.  Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RBM19 MUTATED 4 5 2 0 2 0 1 5 1
RBM19 WILD-TYPE 65 43 37 16 51 20 20 33 49
'RBM19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S5634.  Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RBM19 MUTATED 0 0 2 0 2 1
RBM19 WILD-TYPE 13 16 12 11 9 8
'RBM19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S5635.  Gene #537: 'RBM19 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RBM19 MUTATED 1 0 0 0 2 0 2 0 0
RBM19 WILD-TYPE 10 7 7 9 6 7 9 9 5
'NEUROD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S5636.  Gene #538: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NEUROD1 MUTATED 0 3 5
NEUROD1 WILD-TYPE 42 170 142
'NEUROD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S5637.  Gene #538: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NEUROD1 MUTATED 4 1 1
NEUROD1 WILD-TYPE 58 72 74
'NEUROD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S5638.  Gene #538: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NEUROD1 MUTATED 2 2 4
NEUROD1 WILD-TYPE 68 118 96
'NEUROD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S5639.  Gene #538: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NEUROD1 MUTATED 1 1 0 0 1 3 0 1 1
NEUROD1 WILD-TYPE 40 25 30 29 38 66 20 13 21
'NEUROD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.55

Table S5640.  Gene #538: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NEUROD1 MUTATED 1 3 0 4
NEUROD1 WILD-TYPE 99 69 72 117
'NEUROD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.98

Table S5641.  Gene #538: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NEUROD1 MUTATED 1 2 1 2 2
NEUROD1 WILD-TYPE 58 73 73 117 36
'NEUROD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S5642.  Gene #538: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NEUROD1 MUTATED 2 2 0 0 4
NEUROD1 WILD-TYPE 49 74 61 71 91
'NEUROD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.87

Table S5643.  Gene #538: 'NEUROD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NEUROD1 MUTATED 1 0 0 0 2 1 0 2 2
NEUROD1 WILD-TYPE 68 48 39 16 51 19 21 36 48
'SLFN12L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S5644.  Gene #539: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLFN12L MUTATED 2 0 0 1 0
SLFN12L WILD-TYPE 30 18 46 26 23
'SLFN12L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S5645.  Gene #539: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLFN12L MUTATED 2 1 0
SLFN12L WILD-TYPE 41 66 36
'SLFN12L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S5646.  Gene #539: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLFN12L MUTATED 1 3 3
SLFN12L WILD-TYPE 41 170 144
'SLFN12L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S5647.  Gene #539: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLFN12L MUTATED 4 1 0
SLFN12L WILD-TYPE 58 72 75

Figure S1685.  Get High-res Image Gene #539: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SLFN12L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S5648.  Gene #539: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLFN12L MUTATED 0 2 5
SLFN12L WILD-TYPE 70 118 95
'SLFN12L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S5649.  Gene #539: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLFN12L MUTATED 1 0 0 1 1 3 1 0 0
SLFN12L WILD-TYPE 40 26 30 28 38 66 19 14 22
'SLFN12L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5650.  Gene #539: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLFN12L MUTATED 2 1 2 3
SLFN12L WILD-TYPE 98 71 70 118
'SLFN12L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.15

Table S5651.  Gene #539: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLFN12L MUTATED 1 3 1 0 3
SLFN12L WILD-TYPE 58 72 73 119 35

Figure S1686.  Get High-res Image Gene #539: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLFN12L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S5652.  Gene #539: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLFN12L MUTATED 0 3 1 1 3
SLFN12L WILD-TYPE 51 73 60 70 92
'SLFN12L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.95

Table S5653.  Gene #539: 'SLFN12L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLFN12L MUTATED 0 2 1 0 2 0 0 2 1
SLFN12L WILD-TYPE 69 46 38 16 51 20 21 36 49
'UPF3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S5654.  Gene #540: 'UPF3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UPF3A MUTATED 0 1 8
UPF3A WILD-TYPE 42 172 139

Figure S1687.  Get High-res Image Gene #540: 'UPF3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UPF3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.73

Table S5655.  Gene #540: 'UPF3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UPF3A MUTATED 2 1 4
UPF3A WILD-TYPE 60 72 71
'UPF3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S5656.  Gene #540: 'UPF3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UPF3A MUTATED 1 3 1
UPF3A WILD-TYPE 69 117 99
'UPF3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S5657.  Gene #540: 'UPF3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UPF3A MUTATED 0 2 0 0 1 1 0 0 1
UPF3A WILD-TYPE 41 24 30 29 38 68 20 14 21
'UPF3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.32

Table S5658.  Gene #540: 'UPF3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UPF3A MUTATED 0 4 1 4
UPF3A WILD-TYPE 100 68 71 117
'UPF3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0221 (Fisher's exact test), Q value = 0.15

Table S5659.  Gene #540: 'UPF3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UPF3A MUTATED 0 0 5 2 2
UPF3A WILD-TYPE 59 75 69 117 36

Figure S1688.  Get High-res Image Gene #540: 'UPF3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UPF3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.2

Table S5660.  Gene #540: 'UPF3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UPF3A MUTATED 0 4 0 0 5
UPF3A WILD-TYPE 51 72 61 71 90

Figure S1689.  Get High-res Image Gene #540: 'UPF3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'UPF3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00229 (Fisher's exact test), Q value = 0.04

Table S5661.  Gene #540: 'UPF3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UPF3A MUTATED 0 1 0 3 0 0 0 3 2
UPF3A WILD-TYPE 69 47 39 13 53 20 21 35 48

Figure S1690.  Get High-res Image Gene #540: 'UPF3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KDM3B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00394 (Fisher's exact test), Q value = 0.056

Table S5662.  Gene #541: 'KDM3B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KDM3B MUTATED 7 0 1 1 0
KDM3B WILD-TYPE 25 18 45 26 23

Figure S1691.  Get High-res Image Gene #541: 'KDM3B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KDM3B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0533 (Fisher's exact test), Q value = 0.25

Table S5663.  Gene #541: 'KDM3B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KDM3B MUTATED 6 2 1
KDM3B WILD-TYPE 37 65 35
'KDM3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.19

Table S5664.  Gene #541: 'KDM3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KDM3B MUTATED 3 9 20
KDM3B WILD-TYPE 39 164 127

Figure S1692.  Get High-res Image Gene #541: 'KDM3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KDM3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S5665.  Gene #541: 'KDM3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KDM3B MUTATED 9 4 10
KDM3B WILD-TYPE 53 69 65
'KDM3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S5666.  Gene #541: 'KDM3B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KDM3B MUTATED 3 10 12
KDM3B WILD-TYPE 67 110 88
'KDM3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S5667.  Gene #541: 'KDM3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KDM3B MUTATED 2 0 2 2 2 11 2 1 3
KDM3B WILD-TYPE 39 26 28 27 37 58 18 13 19
'KDM3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S5668.  Gene #541: 'KDM3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KDM3B MUTATED 7 5 10 10
KDM3B WILD-TYPE 93 67 62 111
'KDM3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0415 (Fisher's exact test), Q value = 0.21

Table S5669.  Gene #541: 'KDM3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KDM3B MUTATED 9 4 9 5 5
KDM3B WILD-TYPE 50 71 65 114 33

Figure S1693.  Get High-res Image Gene #541: 'KDM3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KDM3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S5670.  Gene #541: 'KDM3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KDM3B MUTATED 2 10 7 5 7
KDM3B WILD-TYPE 49 66 54 66 88
'KDM3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00982 (Fisher's exact test), Q value = 0.093

Table S5671.  Gene #541: 'KDM3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KDM3B MUTATED 12 6 0 3 2 1 2 4 1
KDM3B WILD-TYPE 57 42 39 13 51 19 19 34 49

Figure S1694.  Get High-res Image Gene #541: 'KDM3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KDM3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5672.  Gene #541: 'KDM3B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KDM3B MUTATED 2 2 2 1 2 1
KDM3B WILD-TYPE 11 14 12 10 9 8
'KDM3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.77

Table S5673.  Gene #541: 'KDM3B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KDM3B MUTATED 3 0 1 1 1 1 0 3 0
KDM3B WILD-TYPE 8 7 6 8 7 6 11 6 5
'RPGRIP1L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S5674.  Gene #542: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RPGRIP1L MUTATED 4 0 0 3 0
RPGRIP1L WILD-TYPE 28 18 46 24 23

Figure S1695.  Get High-res Image Gene #542: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RPGRIP1L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S5675.  Gene #542: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RPGRIP1L MUTATED 4 2 1
RPGRIP1L WILD-TYPE 39 65 35
'RPGRIP1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S5676.  Gene #542: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RPGRIP1L MUTATED 1 5 11
RPGRIP1L WILD-TYPE 41 168 136
'RPGRIP1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S5677.  Gene #542: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RPGRIP1L MUTATED 4 3 3
RPGRIP1L WILD-TYPE 58 70 72
'RPGRIP1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S5678.  Gene #542: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RPGRIP1L MUTATED 1 4 8
RPGRIP1L WILD-TYPE 69 116 92
'RPGRIP1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S5679.  Gene #542: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RPGRIP1L MUTATED 0 1 1 1 0 7 2 1 0
RPGRIP1L WILD-TYPE 41 25 29 28 39 62 18 13 22
'RPGRIP1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.88

Table S5680.  Gene #542: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RPGRIP1L MUTATED 3 5 2 7
RPGRIP1L WILD-TYPE 97 67 70 114
'RPGRIP1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.63

Table S5681.  Gene #542: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RPGRIP1L MUTATED 2 2 5 4 4
RPGRIP1L WILD-TYPE 57 73 69 115 34
'RPGRIP1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S5682.  Gene #542: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RPGRIP1L MUTATED 2 5 2 2 5
RPGRIP1L WILD-TYPE 49 71 59 69 90
'RPGRIP1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0711 (Fisher's exact test), Q value = 0.29

Table S5683.  Gene #542: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RPGRIP1L MUTATED 3 2 0 3 3 2 1 2 0
RPGRIP1L WILD-TYPE 66 46 39 13 50 18 20 36 50
'RPGRIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.93

Table S5684.  Gene #542: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RPGRIP1L MUTATED 1 0 1 1 2 1
RPGRIP1L WILD-TYPE 12 16 13 10 9 8
'RPGRIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S5685.  Gene #542: 'RPGRIP1L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RPGRIP1L MUTATED 0 0 0 2 1 0 1 1 1
RPGRIP1L WILD-TYPE 11 7 7 7 7 7 10 8 4
'RBM12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S5686.  Gene #543: 'RBM12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RBM12 MUTATED 0 2 10
RBM12 WILD-TYPE 42 171 137

Figure S1696.  Get High-res Image Gene #543: 'RBM12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBM12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S5687.  Gene #543: 'RBM12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RBM12 MUTATED 3 1 6
RBM12 WILD-TYPE 59 72 69
'RBM12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S5688.  Gene #543: 'RBM12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RBM12 MUTATED 4 2 3
RBM12 WILD-TYPE 66 118 97
'RBM12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S5689.  Gene #543: 'RBM12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RBM12 MUTATED 4 0 0 1 1 2 1 0 0
RBM12 WILD-TYPE 37 26 30 28 38 67 19 14 22
'RBM12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0401 (Fisher's exact test), Q value = 0.21

Table S5690.  Gene #543: 'RBM12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RBM12 MUTATED 1 6 3 2
RBM12 WILD-TYPE 99 66 69 119

Figure S1697.  Get High-res Image Gene #543: 'RBM12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RBM12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0896 (Fisher's exact test), Q value = 0.32

Table S5691.  Gene #543: 'RBM12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RBM12 MUTATED 2 2 6 1 1
RBM12 WILD-TYPE 57 73 68 118 37
'RBM12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S5692.  Gene #543: 'RBM12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RBM12 MUTATED 1 6 1 1 3
RBM12 WILD-TYPE 50 70 60 70 92
'RBM12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S5693.  Gene #543: 'RBM12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RBM12 MUTATED 2 1 2 2 2 1 1 0 1
RBM12 WILD-TYPE 67 47 37 14 51 19 20 38 49
'RBM12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S5694.  Gene #543: 'RBM12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RBM12 MUTATED 0 2 1 0 0 0
RBM12 WILD-TYPE 13 14 13 11 11 9
'RBM12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 0.99

Table S5695.  Gene #543: 'RBM12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RBM12 MUTATED 0 1 0 0 1 0 1 0 0
RBM12 WILD-TYPE 11 6 7 9 7 7 10 9 5
'PALB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.53

Table S5696.  Gene #544: 'PALB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PALB2 MUTATED 2 0 0 2 1
PALB2 WILD-TYPE 30 18 46 25 22
'PALB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0236 (Fisher's exact test), Q value = 0.16

Table S5697.  Gene #544: 'PALB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PALB2 MUTATED 4 0 1
PALB2 WILD-TYPE 39 67 35

Figure S1698.  Get High-res Image Gene #544: 'PALB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PALB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.093 (Fisher's exact test), Q value = 0.33

Table S5698.  Gene #544: 'PALB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PALB2 MUTATED 2 5 12
PALB2 WILD-TYPE 40 168 135
'PALB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S5699.  Gene #544: 'PALB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PALB2 MUTATED 4 3 7
PALB2 WILD-TYPE 58 70 68
'PALB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S5700.  Gene #544: 'PALB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PALB2 MUTATED 2 6 8
PALB2 WILD-TYPE 68 114 92
'PALB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0415 (Fisher's exact test), Q value = 0.21

Table S5701.  Gene #544: 'PALB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PALB2 MUTATED 1 2 0 0 2 5 3 3 0
PALB2 WILD-TYPE 40 24 30 29 37 64 17 11 22

Figure S1699.  Get High-res Image Gene #544: 'PALB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PALB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S5702.  Gene #544: 'PALB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PALB2 MUTATED 5 7 1 6
PALB2 WILD-TYPE 95 65 71 115
'PALB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S5703.  Gene #544: 'PALB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PALB2 MUTATED 0 5 7 3 4
PALB2 WILD-TYPE 59 70 67 116 34

Figure S1700.  Get High-res Image Gene #544: 'PALB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PALB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0806 (Fisher's exact test), Q value = 0.31

Table S5704.  Gene #544: 'PALB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PALB2 MUTATED 5 7 1 1 5
PALB2 WILD-TYPE 46 69 60 70 90
'PALB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S5705.  Gene #544: 'PALB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PALB2 MUTATED 3 1 4 3 2 1 0 4 1
PALB2 WILD-TYPE 66 47 35 13 51 19 21 34 49
'PCDH12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0775 (Fisher's exact test), Q value = 0.3

Table S5706.  Gene #545: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PCDH12 MUTATED 3 0 0 2 0
PCDH12 WILD-TYPE 29 18 46 25 23
'PCDH12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0671 (Fisher's exact test), Q value = 0.28

Table S5707.  Gene #545: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PCDH12 MUTATED 4 1 0
PCDH12 WILD-TYPE 39 66 36
'PCDH12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00106 (Fisher's exact test), Q value = 0.026

Table S5708.  Gene #545: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PCDH12 MUTATED 1 2 14
PCDH12 WILD-TYPE 41 171 133

Figure S1701.  Get High-res Image Gene #545: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PCDH12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S5709.  Gene #545: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PCDH12 MUTATED 4 2 6
PCDH12 WILD-TYPE 58 71 69
'PCDH12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S5710.  Gene #545: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PCDH12 MUTATED 1 6 6
PCDH12 WILD-TYPE 69 114 94
'PCDH12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S5711.  Gene #545: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PCDH12 MUTATED 1 0 1 3 2 4 1 1 0
PCDH12 WILD-TYPE 40 26 29 26 37 65 19 13 22
'PCDH12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S5712.  Gene #545: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PCDH12 MUTATED 2 6 4 5
PCDH12 WILD-TYPE 98 66 68 116
'PCDH12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00629 (Fisher's exact test), Q value = 0.074

Table S5713.  Gene #545: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PCDH12 MUTATED 2 1 9 2 3
PCDH12 WILD-TYPE 57 74 65 117 35

Figure S1702.  Get High-res Image Gene #545: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PCDH12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 0.2

Table S5714.  Gene #545: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PCDH12 MUTATED 0 8 4 1 4
PCDH12 WILD-TYPE 51 68 57 70 91

Figure S1703.  Get High-res Image Gene #545: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PCDH12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S5715.  Gene #545: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PCDH12 MUTATED 2 4 1 4 1 1 2 2 0
PCDH12 WILD-TYPE 67 44 38 12 52 19 19 36 50

Figure S1704.  Get High-res Image Gene #545: 'PCDH12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MIER1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5716.  Gene #546: 'MIER1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MIER1 MUTATED 0 3 3
MIER1 WILD-TYPE 42 170 144
'MIER1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5717.  Gene #546: 'MIER1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MIER1 MUTATED 1 2 2
MIER1 WILD-TYPE 61 71 73
'MIER1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5718.  Gene #546: 'MIER1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MIER1 MUTATED 1 3 2
MIER1 WILD-TYPE 69 117 98
'MIER1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S5719.  Gene #546: 'MIER1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MIER1 MUTATED 2 0 1 1 0 2 0 0 0
MIER1 WILD-TYPE 39 26 29 28 39 67 20 14 22
'MIER1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 0.97

Table S5720.  Gene #546: 'MIER1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MIER1 MUTATED 3 1 1 1
MIER1 WILD-TYPE 97 71 71 120
'MIER1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.91

Table S5721.  Gene #546: 'MIER1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MIER1 MUTATED 2 2 1 1 0
MIER1 WILD-TYPE 57 73 73 118 38
'MIER1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S5722.  Gene #546: 'MIER1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MIER1 MUTATED 1 1 1 2 1
MIER1 WILD-TYPE 50 75 60 69 94
'MIER1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.65

Table S5723.  Gene #546: 'MIER1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MIER1 MUTATED 1 2 0 1 1 1 0 0 0
MIER1 WILD-TYPE 68 46 39 15 52 19 21 38 50
'ICOSLG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.27

Table S5724.  Gene #547: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ICOSLG MUTATED 0 0 4
ICOSLG WILD-TYPE 42 173 143
'ICOSLG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S5725.  Gene #547: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ICOSLG MUTATED 2 0 2
ICOSLG WILD-TYPE 60 73 73
'ICOSLG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S5726.  Gene #547: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ICOSLG MUTATED 0 1 3
ICOSLG WILD-TYPE 70 119 97
'ICOSLG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S5727.  Gene #547: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ICOSLG MUTATED 0 1 0 0 0 3 0 0 0
ICOSLG WILD-TYPE 41 25 30 29 39 66 20 14 22
'ICOSLG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0446 (Fisher's exact test), Q value = 0.22

Table S5728.  Gene #547: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ICOSLG MUTATED 0 2 2 0
ICOSLG WILD-TYPE 100 70 70 121

Figure S1705.  Get High-res Image Gene #547: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ICOSLG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0855 (Fisher's exact test), Q value = 0.32

Table S5729.  Gene #547: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ICOSLG MUTATED 0 1 3 0 0
ICOSLG WILD-TYPE 59 74 71 119 38
'ICOSLG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S5730.  Gene #547: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ICOSLG MUTATED 0 3 0 0 1
ICOSLG WILD-TYPE 51 73 61 71 94
'ICOSLG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S5731.  Gene #547: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ICOSLG MUTATED 0 2 0 1 0 0 0 0 1
ICOSLG WILD-TYPE 69 46 39 15 53 20 21 38 49
'ICOSLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S5732.  Gene #547: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ICOSLG MUTATED 0 0 1 0 2 0
ICOSLG WILD-TYPE 13 16 13 11 9 9
'ICOSLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S5733.  Gene #547: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ICOSLG MUTATED 0 0 0 1 0 1 1 0 0
ICOSLG WILD-TYPE 11 7 7 8 8 6 10 9 5
'ARNT2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00887 (Fisher's exact test), Q value = 0.088

Table S5734.  Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ARNT2 MUTATED 4 0 0 0 0
ARNT2 WILD-TYPE 28 18 46 27 23

Figure S1706.  Get High-res Image Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARNT2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 0.24

Table S5735.  Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ARNT2 MUTATED 3 0 1
ARNT2 WILD-TYPE 40 67 35
'ARNT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0056 (Fisher's exact test), Q value = 0.071

Table S5736.  Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARNT2 MUTATED 1 1 10
ARNT2 WILD-TYPE 41 172 137

Figure S1707.  Get High-res Image Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARNT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.77

Table S5737.  Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARNT2 MUTATED 3 1 4
ARNT2 WILD-TYPE 59 72 71
'ARNT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S5738.  Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARNT2 MUTATED 1 3 6
ARNT2 WILD-TYPE 69 117 94
'ARNT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S5739.  Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARNT2 MUTATED 3 0 1 1 1 3 0 1 0
ARNT2 WILD-TYPE 38 26 29 28 38 66 20 13 22
'ARNT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0435 (Fisher's exact test), Q value = 0.22

Table S5740.  Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARNT2 MUTATED 0 3 5 4
ARNT2 WILD-TYPE 100 69 67 117

Figure S1708.  Get High-res Image Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ARNT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00604 (Fisher's exact test), Q value = 0.073

Table S5741.  Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARNT2 MUTATED 2 0 6 1 3
ARNT2 WILD-TYPE 57 75 68 118 35

Figure S1709.  Get High-res Image Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARNT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S5742.  Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARNT2 MUTATED 1 3 3 3 1
ARNT2 WILD-TYPE 50 73 58 68 94
'ARNT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S5743.  Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARNT2 MUTATED 0 4 0 2 3 1 0 1 0
ARNT2 WILD-TYPE 69 44 39 14 50 19 21 37 50

Figure S1710.  Get High-res Image Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARNT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.96

Table S5744.  Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ARNT2 MUTATED 0 0 1 1 1 0
ARNT2 WILD-TYPE 13 16 13 10 10 9
'ARNT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.99

Table S5745.  Gene #548: 'ARNT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ARNT2 MUTATED 0 0 1 0 1 0 1 0 0
ARNT2 WILD-TYPE 11 7 6 9 7 7 10 9 5
'MRE11A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.018

Table S5746.  Gene #549: 'MRE11A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MRE11A MUTATED 2 0 10
MRE11A WILD-TYPE 40 173 137

Figure S1711.  Get High-res Image Gene #549: 'MRE11A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MRE11A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S5747.  Gene #549: 'MRE11A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MRE11A MUTATED 5 1 5
MRE11A WILD-TYPE 57 72 70
'MRE11A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S5748.  Gene #549: 'MRE11A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MRE11A MUTATED 1 3 7
MRE11A WILD-TYPE 69 117 93
'MRE11A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S5749.  Gene #549: 'MRE11A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MRE11A MUTATED 3 0 0 2 0 4 0 2 0
MRE11A WILD-TYPE 38 26 30 27 39 65 20 12 22
'MRE11A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00448 (Fisher's exact test), Q value = 0.061

Table S5750.  Gene #549: 'MRE11A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MRE11A MUTATED 1 7 3 1
MRE11A WILD-TYPE 99 65 69 120

Figure S1712.  Get High-res Image Gene #549: 'MRE11A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MRE11A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00575 (Fisher's exact test), Q value = 0.072

Table S5751.  Gene #549: 'MRE11A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MRE11A MUTATED 2 2 7 0 1
MRE11A WILD-TYPE 57 73 67 119 37

Figure S1713.  Get High-res Image Gene #549: 'MRE11A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MRE11A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 0.3

Table S5752.  Gene #549: 'MRE11A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MRE11A MUTATED 1 5 3 2 0
MRE11A WILD-TYPE 50 71 58 69 95
'MRE11A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S5753.  Gene #549: 'MRE11A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MRE11A MUTATED 3 3 1 3 0 1 0 0 0
MRE11A WILD-TYPE 66 45 38 13 53 19 21 38 50

Figure S1714.  Get High-res Image Gene #549: 'MRE11A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MRE11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S5754.  Gene #549: 'MRE11A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MRE11A MUTATED 0 1 3 0 0 0
MRE11A WILD-TYPE 13 15 11 11 11 9
'MRE11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.78

Table S5755.  Gene #549: 'MRE11A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MRE11A MUTATED 1 0 0 0 1 1 0 0 1
MRE11A WILD-TYPE 10 7 7 9 7 6 11 9 4
'DUSP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S5756.  Gene #550: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DUSP1 MUTATED 0 1 5
DUSP1 WILD-TYPE 42 172 142
'DUSP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S5757.  Gene #550: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DUSP1 MUTATED 2 2 1
DUSP1 WILD-TYPE 60 71 74
'DUSP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0448 (Fisher's exact test), Q value = 0.23

Table S5758.  Gene #550: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DUSP1 MUTATED 3 0 2
DUSP1 WILD-TYPE 67 120 98

Figure S1715.  Get High-res Image Gene #550: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DUSP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.988 (Fisher's exact test), Q value = 1

Table S5759.  Gene #550: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DUSP1 MUTATED 1 1 0 0 1 2 0 0 0
DUSP1 WILD-TYPE 40 25 30 29 38 67 20 14 22
'DUSP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S5760.  Gene #550: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DUSP1 MUTATED 1 2 2 1
DUSP1 WILD-TYPE 99 70 70 120
'DUSP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S5761.  Gene #550: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DUSP1 MUTATED 1 2 2 1 0
DUSP1 WILD-TYPE 58 73 72 118 38
'DUSP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0985 (Fisher's exact test), Q value = 0.34

Table S5762.  Gene #550: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DUSP1 MUTATED 1 3 2 0 0
DUSP1 WILD-TYPE 50 73 59 71 95
'DUSP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S5763.  Gene #550: 'DUSP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DUSP1 MUTATED 3 1 0 0 0 1 1 0 0
DUSP1 WILD-TYPE 66 47 39 16 53 19 20 38 50
'ERGIC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.66

Table S5764.  Gene #551: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ERGIC1 MUTATED 1 1 2
ERGIC1 WILD-TYPE 41 172 145
'ERGIC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5765.  Gene #551: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ERGIC1 MUTATED 1 1 2
ERGIC1 WILD-TYPE 61 72 73
'ERGIC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S5766.  Gene #551: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ERGIC1 MUTATED 0 1 3
ERGIC1 WILD-TYPE 70 119 97
'ERGIC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S5767.  Gene #551: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ERGIC1 MUTATED 1 0 0 1 0 2 0 0 0
ERGIC1 WILD-TYPE 40 26 30 28 39 67 20 14 22
'ERGIC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S5768.  Gene #551: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ERGIC1 MUTATED 1 1 2 0
ERGIC1 WILD-TYPE 99 71 70 121
'ERGIC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S5769.  Gene #551: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ERGIC1 MUTATED 0 3 1 0 0
ERGIC1 WILD-TYPE 59 72 73 119 38
'ERGIC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S5770.  Gene #551: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ERGIC1 MUTATED 1 2 0 1 0
ERGIC1 WILD-TYPE 50 74 61 70 95
'ERGIC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.78

Table S5771.  Gene #551: 'ERGIC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ERGIC1 MUTATED 3 0 1 0 0 0 0 0 0
ERGIC1 WILD-TYPE 66 48 38 16 53 20 21 38 50
'SYNRG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S5772.  Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SYNRG MUTATED 4 0 0 1 0
SYNRG WILD-TYPE 28 18 46 26 23

Figure S1716.  Get High-res Image Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SYNRG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00269 (Fisher's exact test), Q value = 0.044

Table S5773.  Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SYNRG MUTATED 5 0 0
SYNRG WILD-TYPE 38 67 36

Figure S1717.  Get High-res Image Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SYNRG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.19

Table S5774.  Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SYNRG MUTATED 2 3 11
SYNRG WILD-TYPE 40 170 136

Figure S1718.  Get High-res Image Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SYNRG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0454 (Fisher's exact test), Q value = 0.23

Table S5775.  Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SYNRG MUTATED 7 1 3
SYNRG WILD-TYPE 55 72 72

Figure S1719.  Get High-res Image Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SYNRG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0818 (Fisher's exact test), Q value = 0.31

Table S5776.  Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SYNRG MUTATED 1 5 9
SYNRG WILD-TYPE 69 115 91
'SYNRG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S5777.  Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SYNRG MUTATED 3 0 1 1 1 8 1 0 0
SYNRG WILD-TYPE 38 26 29 28 38 61 19 14 22
'SYNRG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S5778.  Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SYNRG MUTATED 1 5 5 5
SYNRG WILD-TYPE 99 67 67 116
'SYNRG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00036 (Fisher's exact test), Q value = 0.013

Table S5779.  Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SYNRG MUTATED 1 1 8 1 5
SYNRG WILD-TYPE 58 74 66 118 33

Figure S1720.  Get High-res Image Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SYNRG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.56

Table S5780.  Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SYNRG MUTATED 1 7 1 2 5
SYNRG WILD-TYPE 50 69 60 69 90
'SYNRG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0877 (Fisher's exact test), Q value = 0.32

Table S5781.  Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SYNRG MUTATED 6 3 0 1 1 0 1 4 0
SYNRG WILD-TYPE 63 45 39 15 52 20 20 34 50
'SYNRG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 0.31

Table S5782.  Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SYNRG MUTATED 1 0 1 0 3 0
SYNRG WILD-TYPE 12 16 13 11 8 9
'SYNRG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S5783.  Gene #552: 'SYNRG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SYNRG MUTATED 0 0 0 1 0 1 2 1 0
SYNRG WILD-TYPE 11 7 7 8 8 6 9 8 5
'BACE2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S5784.  Gene #553: 'BACE2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BACE2 MUTATED 1 0 0 2 0
BACE2 WILD-TYPE 31 18 46 25 23
'BACE2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S5785.  Gene #553: 'BACE2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BACE2 MUTATED 2 1 0
BACE2 WILD-TYPE 41 66 36
'BACE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.25

Table S5786.  Gene #553: 'BACE2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BACE2 MUTATED 0 2 8
BACE2 WILD-TYPE 42 171 139
'BACE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5787.  Gene #553: 'BACE2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BACE2 MUTATED 2 2 3
BACE2 WILD-TYPE 60 71 72
'BACE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5788.  Gene #553: 'BACE2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BACE2 MUTATED 2 3 2
BACE2 WILD-TYPE 68 117 98
'BACE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S5789.  Gene #553: 'BACE2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BACE2 MUTATED 1 0 2 0 1 1 0 2 0
BACE2 WILD-TYPE 40 26 28 29 38 68 20 12 22
'BACE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S5790.  Gene #553: 'BACE2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BACE2 MUTATED 1 3 3 3
BACE2 WILD-TYPE 99 69 69 118
'BACE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S5791.  Gene #553: 'BACE2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BACE2 MUTATED 2 2 3 1 2
BACE2 WILD-TYPE 57 73 71 118 36
'BACE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0606 (Fisher's exact test), Q value = 0.26

Table S5792.  Gene #553: 'BACE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BACE2 MUTATED 0 4 4 0 2
BACE2 WILD-TYPE 51 72 57 71 93
'BACE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S5793.  Gene #553: 'BACE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BACE2 MUTATED 3 1 1 2 0 1 1 1 0
BACE2 WILD-TYPE 66 47 38 14 53 19 20 37 50
'BACE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S5794.  Gene #553: 'BACE2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BACE2 MUTATED 0 1 0 0 1 1
BACE2 WILD-TYPE 13 15 14 11 10 8
'BACE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S5795.  Gene #553: 'BACE2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BACE2 MUTATED 1 1 0 1 0 0 0 0 0
BACE2 WILD-TYPE 10 6 7 8 8 7 11 9 5
'LMTK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0632 (Fisher's exact test), Q value = 0.27

Table S5796.  Gene #554: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LMTK3 MUTATED 2 3 10
LMTK3 WILD-TYPE 40 170 137
'LMTK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S5797.  Gene #554: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LMTK3 MUTATED 7 2 6
LMTK3 WILD-TYPE 55 71 69
'LMTK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S5798.  Gene #554: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LMTK3 MUTATED 1 6 8
LMTK3 WILD-TYPE 69 114 92
'LMTK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S5799.  Gene #554: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LMTK3 MUTATED 2 2 1 1 0 7 1 1 0
LMTK3 WILD-TYPE 39 24 29 28 39 62 19 13 22
'LMTK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00154 (Fisher's exact test), Q value = 0.032

Table S5800.  Gene #554: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LMTK3 MUTATED 3 6 6 0
LMTK3 WILD-TYPE 97 66 66 121

Figure S1721.  Get High-res Image Gene #554: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LMTK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00094 (Fisher's exact test), Q value = 0.024

Table S5801.  Gene #554: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LMTK3 MUTATED 4 3 8 0 0
LMTK3 WILD-TYPE 55 72 66 119 38

Figure S1722.  Get High-res Image Gene #554: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0048

Table S5802.  Gene #554: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LMTK3 MUTATED 1 9 5 0 0
LMTK3 WILD-TYPE 50 67 56 71 95

Figure S1723.  Get High-res Image Gene #554: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.002 (Fisher's exact test), Q value = 0.038

Table S5803.  Gene #554: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LMTK3 MUTATED 4 6 1 3 0 1 0 0 0
LMTK3 WILD-TYPE 65 42 38 13 53 19 21 38 50

Figure S1724.  Get High-res Image Gene #554: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 0.26

Table S5804.  Gene #554: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LMTK3 MUTATED 0 0 1 1 3 0
LMTK3 WILD-TYPE 13 16 13 10 8 9
'LMTK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S5805.  Gene #554: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LMTK3 MUTATED 0 0 1 2 0 0 2 0 0
LMTK3 WILD-TYPE 11 7 6 7 8 7 9 9 5
'RTP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S5806.  Gene #555: 'RTP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RTP3 MUTATED 1 4 0
RTP3 WILD-TYPE 41 169 147
'RTP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S5807.  Gene #555: 'RTP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RTP3 MUTATED 1 3 1
RTP3 WILD-TYPE 61 70 74
'RTP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0872 (Fisher's exact test), Q value = 0.32

Table S5808.  Gene #555: 'RTP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RTP3 MUTATED 0 4 0
RTP3 WILD-TYPE 70 116 100
'RTP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0418 (Fisher's exact test), Q value = 0.22

Table S5809.  Gene #555: 'RTP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RTP3 MUTATED 0 0 2 2 0 0 0 0 0
RTP3 WILD-TYPE 41 26 28 27 39 69 20 14 22

Figure S1725.  Get High-res Image Gene #555: 'RTP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'RTP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.2

Table S5810.  Gene #555: 'RTP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RTP3 MUTATED 4 1 0 0
RTP3 WILD-TYPE 96 71 72 121

Figure S1726.  Get High-res Image Gene #555: 'RTP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RTP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S5811.  Gene #555: 'RTP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RTP3 MUTATED 1 3 1 0 0
RTP3 WILD-TYPE 58 72 73 119 38
'RTP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.87

Table S5812.  Gene #555: 'RTP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RTP3 MUTATED 1 2 1 1 0
RTP3 WILD-TYPE 50 74 60 70 95
'RTP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 0.93

Table S5813.  Gene #555: 'RTP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RTP3 MUTATED 2 1 0 1 1 0 0 0 0
RTP3 WILD-TYPE 67 47 39 15 52 20 21 38 50
'BCL9L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.53

Table S5814.  Gene #556: 'BCL9L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BCL9L MUTATED 1 2 1 0 0
BCL9L WILD-TYPE 31 16 45 27 23
'BCL9L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S5815.  Gene #556: 'BCL9L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BCL9L MUTATED 2 1 1
BCL9L WILD-TYPE 41 66 35
'BCL9L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S5816.  Gene #556: 'BCL9L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BCL9L MUTATED 1 4 14
BCL9L WILD-TYPE 41 169 133

Figure S1727.  Get High-res Image Gene #556: 'BCL9L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BCL9L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0695 (Fisher's exact test), Q value = 0.28

Table S5817.  Gene #556: 'BCL9L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BCL9L MUTATED 8 2 4
BCL9L WILD-TYPE 54 71 71
'BCL9L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.13

Table S5818.  Gene #556: 'BCL9L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BCL9L MUTATED 1 3 10
BCL9L WILD-TYPE 69 117 90

Figure S1728.  Get High-res Image Gene #556: 'BCL9L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'BCL9L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S5819.  Gene #556: 'BCL9L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BCL9L MUTATED 1 0 1 0 2 7 2 1 0
BCL9L WILD-TYPE 40 26 29 29 37 62 18 13 22
'BCL9L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.25

Table S5820.  Gene #556: 'BCL9L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BCL9L MUTATED 2 6 7 4
BCL9L WILD-TYPE 98 66 65 117
'BCL9L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S5821.  Gene #556: 'BCL9L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BCL9L MUTATED 1 3 10 3 2
BCL9L WILD-TYPE 58 72 64 116 36

Figure S1729.  Get High-res Image Gene #556: 'BCL9L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BCL9L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 0.26

Table S5822.  Gene #556: 'BCL9L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BCL9L MUTATED 2 9 4 1 3
BCL9L WILD-TYPE 49 67 57 70 92
'BCL9L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S5823.  Gene #556: 'BCL9L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BCL9L MUTATED 4 4 1 2 1 1 3 1 2
BCL9L WILD-TYPE 65 44 38 14 52 19 18 37 48
'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.6

Table S5824.  Gene #556: 'BCL9L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BCL9L MUTATED 0 0 1 1 2 0
BCL9L WILD-TYPE 13 16 13 10 9 9
'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.78

Table S5825.  Gene #556: 'BCL9L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BCL9L MUTATED 0 0 0 0 1 1 2 0 0
BCL9L WILD-TYPE 11 7 7 9 7 6 9 9 5
'AKAP9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.012

Table S5826.  Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AKAP9 MUTATED 9 0 0 3 2
AKAP9 WILD-TYPE 23 18 46 24 21

Figure S1730.  Get High-res Image Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AKAP9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.009

Table S5827.  Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AKAP9 MUTATED 11 1 2
AKAP9 WILD-TYPE 32 66 34

Figure S1731.  Get High-res Image Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'AKAP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S5828.  Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AKAP9 MUTATED 2 9 32
AKAP9 WILD-TYPE 40 164 115

Figure S1732.  Get High-res Image Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AKAP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S5829.  Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AKAP9 MUTATED 11 6 12
AKAP9 WILD-TYPE 51 67 63
'AKAP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.56

Table S5830.  Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AKAP9 MUTATED 5 15 16
AKAP9 WILD-TYPE 65 105 84
'AKAP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S5831.  Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AKAP9 MUTATED 6 1 1 3 7 10 4 1 3
AKAP9 WILD-TYPE 35 25 29 26 32 59 16 13 19
'AKAP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.24

Table S5832.  Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AKAP9 MUTATED 5 12 11 15
AKAP9 WILD-TYPE 95 60 61 106
'AKAP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00255 (Fisher's exact test), Q value = 0.043

Table S5833.  Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AKAP9 MUTATED 7 6 15 6 9
AKAP9 WILD-TYPE 52 69 59 113 29

Figure S1733.  Get High-res Image Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AKAP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00395 (Fisher's exact test), Q value = 0.056

Table S5834.  Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AKAP9 MUTATED 4 14 8 1 15
AKAP9 WILD-TYPE 47 62 53 70 80

Figure S1734.  Get High-res Image Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'AKAP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S5835.  Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AKAP9 MUTATED 8 7 1 4 5 3 3 8 3
AKAP9 WILD-TYPE 61 41 38 12 48 17 18 30 47
'AKAP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S5836.  Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AKAP9 MUTATED 0 2 3 1 3 0
AKAP9 WILD-TYPE 13 14 11 10 8 9
'AKAP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0731 (Fisher's exact test), Q value = 0.29

Table S5837.  Gene #557: 'AKAP9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AKAP9 MUTATED 1 0 0 0 3 2 3 0 0
AKAP9 WILD-TYPE 10 7 7 9 5 5 8 9 5
'ZNF547 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S5838.  Gene #558: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF547 MUTATED 1 3 4
ZNF547 WILD-TYPE 41 170 143
'ZNF547 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S5839.  Gene #558: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF547 MUTATED 3 2 3
ZNF547 WILD-TYPE 59 71 72
'ZNF547 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S5840.  Gene #558: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF547 MUTATED 0 3 5
ZNF547 WILD-TYPE 70 117 95
'ZNF547 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S5841.  Gene #558: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF547 MUTATED 1 0 2 0 1 4 0 0 0
ZNF547 WILD-TYPE 40 26 28 29 38 65 20 14 22
'ZNF547 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 0.34

Table S5842.  Gene #558: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF547 MUTATED 3 2 3 0
ZNF547 WILD-TYPE 97 70 69 121
'ZNF547 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0778 (Fisher's exact test), Q value = 0.3

Table S5843.  Gene #558: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF547 MUTATED 2 3 3 0 0
ZNF547 WILD-TYPE 57 72 71 119 38
'ZNF547 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S5844.  Gene #558: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF547 MUTATED 0 3 2 2 1
ZNF547 WILD-TYPE 51 73 59 69 94
'ZNF547 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.53

Table S5845.  Gene #558: 'ZNF547 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF547 MUTATED 3 3 0 1 0 0 0 1 0
ZNF547 WILD-TYPE 66 45 39 15 53 20 21 37 50
'MRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S5846.  Gene #559: 'MRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MRAS MUTATED 1 1 2
MRAS WILD-TYPE 41 172 145
'MRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5847.  Gene #559: 'MRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MRAS MUTATED 1 1 1
MRAS WILD-TYPE 61 72 74
'MRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.79

Table S5848.  Gene #559: 'MRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MRAS MUTATED 0 3 1
MRAS WILD-TYPE 70 117 99
'MRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S5849.  Gene #559: 'MRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MRAS MUTATED 0 0 0 1 1 1 0 1 0
MRAS WILD-TYPE 41 26 30 28 38 68 20 13 22
'MRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S5850.  Gene #559: 'MRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MRAS MUTATED 2 1 0 1
MRAS WILD-TYPE 98 71 72 120
'MRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S5851.  Gene #559: 'MRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MRAS MUTATED 1 1 1 0 1
MRAS WILD-TYPE 58 74 73 119 37
'MRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.86

Table S5852.  Gene #559: 'MRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MRAS MUTATED 1 2 0 0 1
MRAS WILD-TYPE 50 74 61 71 94
'MRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.53

Table S5853.  Gene #559: 'MRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MRAS MUTATED 0 1 1 1 0 0 0 1 0
MRAS WILD-TYPE 69 47 38 15 53 20 21 37 50
'ARFIP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.95

Table S5854.  Gene #560: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ARFIP1 MUTATED 1 0 1 2 0
ARFIP1 WILD-TYPE 31 18 45 25 23
'ARFIP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S5855.  Gene #560: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ARFIP1 MUTATED 2 1 1
ARFIP1 WILD-TYPE 41 66 35
'ARFIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0059 (Fisher's exact test), Q value = 0.073

Table S5856.  Gene #560: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARFIP1 MUTATED 1 1 10
ARFIP1 WILD-TYPE 41 172 137

Figure S1735.  Get High-res Image Gene #560: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARFIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.18

Table S5857.  Gene #560: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARFIP1 MUTATED 5 0 2
ARFIP1 WILD-TYPE 57 73 73

Figure S1736.  Get High-res Image Gene #560: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ARFIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S5858.  Gene #560: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARFIP1 MUTATED 2 2 7
ARFIP1 WILD-TYPE 68 118 93
'ARFIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S5859.  Gene #560: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARFIP1 MUTATED 1 1 0 1 1 6 0 1 0
ARFIP1 WILD-TYPE 40 25 30 28 38 63 20 13 22
'ARFIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0505 (Fisher's exact test), Q value = 0.24

Table S5860.  Gene #560: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARFIP1 MUTATED 0 4 4 3
ARFIP1 WILD-TYPE 100 68 68 118
'ARFIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.57

Table S5861.  Gene #560: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARFIP1 MUTATED 2 2 4 1 2
ARFIP1 WILD-TYPE 57 73 70 118 36
'ARFIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S5862.  Gene #560: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARFIP1 MUTATED 0 4 2 1 4
ARFIP1 WILD-TYPE 51 72 59 70 91
'ARFIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.049 (Fisher's exact test), Q value = 0.24

Table S5863.  Gene #560: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARFIP1 MUTATED 1 3 0 2 0 1 1 0 3
ARFIP1 WILD-TYPE 68 45 39 14 53 19 20 38 47

Figure S1737.  Get High-res Image Gene #560: 'ARFIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CNTFR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S5864.  Gene #561: 'CNTFR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CNTFR MUTATED 2 3 5
CNTFR WILD-TYPE 40 170 142
'CNTFR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5865.  Gene #561: 'CNTFR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CNTFR MUTATED 2 3 3
CNTFR WILD-TYPE 60 70 72
'CNTFR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0515 (Fisher's exact test), Q value = 0.24

Table S5866.  Gene #561: 'CNTFR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CNTFR MUTATED 0 2 6
CNTFR WILD-TYPE 70 118 94
'CNTFR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S5867.  Gene #561: 'CNTFR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CNTFR MUTATED 1 0 0 2 0 5 0 0 0
CNTFR WILD-TYPE 40 26 30 27 39 64 20 14 22
'CNTFR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S5868.  Gene #561: 'CNTFR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CNTFR MUTATED 3 3 2 2
CNTFR WILD-TYPE 97 69 70 119
'CNTFR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.94

Table S5869.  Gene #561: 'CNTFR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CNTFR MUTATED 2 3 3 2 0
CNTFR WILD-TYPE 57 72 71 117 38
'CNTFR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.3

Table S5870.  Gene #561: 'CNTFR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CNTFR MUTATED 2 5 1 2 0
CNTFR WILD-TYPE 49 71 60 69 95
'CNTFR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.95

Table S5871.  Gene #561: 'CNTFR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CNTFR MUTATED 1 2 1 1 3 1 0 0 1
CNTFR WILD-TYPE 68 46 38 15 50 19 21 38 49
'CNTFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S5872.  Gene #561: 'CNTFR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CNTFR MUTATED 1 0 0 0 2 0
CNTFR WILD-TYPE 12 16 14 11 9 9
'CNTFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S5873.  Gene #561: 'CNTFR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CNTFR MUTATED 0 0 0 1 0 0 1 0 1
CNTFR WILD-TYPE 11 7 7 8 8 7 10 9 4
'RANBP17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S5874.  Gene #562: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RANBP17 MUTATED 1 2 7
RANBP17 WILD-TYPE 41 171 140
'RANBP17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.77

Table S5875.  Gene #562: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RANBP17 MUTATED 3 1 4
RANBP17 WILD-TYPE 59 72 71
'RANBP17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0754 (Fisher's exact test), Q value = 0.3

Table S5876.  Gene #562: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RANBP17 MUTATED 1 2 7
RANBP17 WILD-TYPE 69 118 93
'RANBP17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S5877.  Gene #562: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RANBP17 MUTATED 1 1 0 0 2 5 0 0 1
RANBP17 WILD-TYPE 40 25 30 29 37 64 20 14 21
'RANBP17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S5878.  Gene #562: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RANBP17 MUTATED 2 3 4 1
RANBP17 WILD-TYPE 98 69 68 120
'RANBP17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0282 (Fisher's exact test), Q value = 0.18

Table S5879.  Gene #562: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RANBP17 MUTATED 3 0 5 1 1
RANBP17 WILD-TYPE 56 75 69 118 37

Figure S1738.  Get High-res Image Gene #562: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RANBP17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0875 (Fisher's exact test), Q value = 0.32

Table S5880.  Gene #562: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RANBP17 MUTATED 1 5 2 0 1
RANBP17 WILD-TYPE 50 71 59 71 94
'RANBP17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S5881.  Gene #562: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RANBP17 MUTATED 2 3 1 2 1 0 0 0 0
RANBP17 WILD-TYPE 67 45 38 14 52 20 21 38 50
'RANBP17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S5882.  Gene #562: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RANBP17 MUTATED 0 0 0 1 3 0
RANBP17 WILD-TYPE 13 16 14 10 8 9

Figure S1739.  Get High-res Image Gene #562: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RANBP17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.99

Table S5883.  Gene #562: 'RANBP17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RANBP17 MUTATED 0 0 0 1 0 0 2 1 0
RANBP17 WILD-TYPE 11 7 7 8 8 7 9 8 5
'ZNF280C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S5884.  Gene #563: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF280C MUTATED 0 3 6
ZNF280C WILD-TYPE 42 170 141
'ZNF280C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S5885.  Gene #563: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF280C MUTATED 4 2 1
ZNF280C WILD-TYPE 58 71 74
'ZNF280C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S5886.  Gene #563: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF280C MUTATED 0 3 5
ZNF280C WILD-TYPE 70 117 95
'ZNF280C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S5887.  Gene #563: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF280C MUTATED 1 0 0 2 0 4 0 1 0
ZNF280C WILD-TYPE 40 26 30 27 39 65 20 13 22
'ZNF280C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S5888.  Gene #563: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF280C MUTATED 3 2 2 2
ZNF280C WILD-TYPE 97 70 70 119
'ZNF280C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.78

Table S5889.  Gene #563: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF280C MUTATED 3 2 2 1 1
ZNF280C WILD-TYPE 56 73 72 118 37
'ZNF280C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S5890.  Gene #563: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF280C MUTATED 1 2 3 1 2
ZNF280C WILD-TYPE 50 74 58 70 93
'ZNF280C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S5891.  Gene #563: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF280C MUTATED 3 1 1 0 1 1 1 0 1
ZNF280C WILD-TYPE 66 47 38 16 52 19 20 38 49
'ZNF280C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S5892.  Gene #563: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF280C MUTATED 0 0 1 2 0 0
ZNF280C WILD-TYPE 13 16 13 9 11 9
'ZNF280C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0415 (Fisher's exact test), Q value = 0.21

Table S5893.  Gene #563: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF280C MUTATED 0 0 0 0 0 0 3 0 0
ZNF280C WILD-TYPE 11 7 7 9 8 7 8 9 5

Figure S1740.  Get High-res Image Gene #563: 'ZNF280C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SCN2A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0056 (Fisher's exact test), Q value = 0.071

Table S5894.  Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SCN2A MUTATED 7 0 1 2 0
SCN2A WILD-TYPE 25 18 45 25 23

Figure S1741.  Get High-res Image Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SCN2A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00168 (Fisher's exact test), Q value = 0.034

Table S5895.  Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SCN2A MUTATED 8 2 0
SCN2A WILD-TYPE 35 65 36

Figure S1742.  Get High-res Image Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SCN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00223 (Fisher's exact test), Q value = 0.04

Table S5896.  Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SCN2A MUTATED 1 15 28
SCN2A WILD-TYPE 41 158 119

Figure S1743.  Get High-res Image Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SCN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S5897.  Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SCN2A MUTATED 10 11 11
SCN2A WILD-TYPE 52 62 64
'SCN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S5898.  Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SCN2A MUTATED 6 14 16
SCN2A WILD-TYPE 64 106 84
'SCN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0856 (Fisher's exact test), Q value = 0.32

Table S5899.  Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SCN2A MUTATED 7 1 2 5 2 13 1 4 1
SCN2A WILD-TYPE 34 25 28 24 37 56 19 10 21
'SCN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S5900.  Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SCN2A MUTATED 13 11 9 12
SCN2A WILD-TYPE 87 61 63 109
'SCN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00058 (Fisher's exact test), Q value = 0.018

Table S5901.  Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SCN2A MUTATED 6 15 12 4 8
SCN2A WILD-TYPE 53 60 62 115 30

Figure S1744.  Get High-res Image Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SCN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S5902.  Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SCN2A MUTATED 9 12 8 3 10
SCN2A WILD-TYPE 42 64 53 68 85
'SCN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0296 (Fisher's exact test), Q value = 0.18

Table S5903.  Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SCN2A MUTATED 9 7 8 4 2 3 3 5 1
SCN2A WILD-TYPE 60 41 31 12 51 17 18 33 49

Figure S1745.  Get High-res Image Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SCN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S5904.  Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SCN2A MUTATED 2 4 2 1 1 0
SCN2A WILD-TYPE 11 12 12 10 10 9
'SCN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S5905.  Gene #564: 'SCN2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SCN2A MUTATED 0 2 1 2 1 0 3 1 0
SCN2A WILD-TYPE 11 5 6 7 7 7 8 8 5
'PLEK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 0.3

Table S5906.  Gene #565: 'PLEK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PLEK MUTATED 3 0 0 2 0
PLEK WILD-TYPE 29 18 46 25 23
'PLEK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0673 (Fisher's exact test), Q value = 0.28

Table S5907.  Gene #565: 'PLEK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PLEK MUTATED 4 1 0
PLEK WILD-TYPE 39 66 36
'PLEK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.17

Table S5908.  Gene #565: 'PLEK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PLEK MUTATED 0 2 9
PLEK WILD-TYPE 42 171 138

Figure S1746.  Get High-res Image Gene #565: 'PLEK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PLEK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S5909.  Gene #565: 'PLEK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PLEK MUTATED 2 1 4
PLEK WILD-TYPE 60 72 71
'PLEK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S5910.  Gene #565: 'PLEK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PLEK MUTATED 1 4 5
PLEK WILD-TYPE 69 116 95
'PLEK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S5911.  Gene #565: 'PLEK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PLEK MUTATED 2 0 1 2 0 3 1 0 1
PLEK WILD-TYPE 39 26 29 27 39 66 19 14 21
'PLEK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S5912.  Gene #565: 'PLEK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PLEK MUTATED 2 3 2 5
PLEK WILD-TYPE 98 69 70 116
'PLEK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0543 (Fisher's exact test), Q value = 0.25

Table S5913.  Gene #565: 'PLEK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PLEK MUTATED 1 3 3 1 4
PLEK WILD-TYPE 58 72 71 118 34
'PLEK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.53

Table S5914.  Gene #565: 'PLEK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PLEK MUTATED 1 4 1 0 5
PLEK WILD-TYPE 50 72 60 71 90
'PLEK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S5915.  Gene #565: 'PLEK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PLEK MUTATED 0 2 1 1 2 2 0 2 1
PLEK WILD-TYPE 69 46 38 15 51 18 21 36 49
'FAHD2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S5916.  Gene #566: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAHD2A MUTATED 0 1 5
FAHD2A WILD-TYPE 42 172 142
'FAHD2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S5917.  Gene #566: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAHD2A MUTATED 0 1 4
FAHD2A WILD-TYPE 62 72 71
'FAHD2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0533 (Fisher's exact test), Q value = 0.25

Table S5918.  Gene #566: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAHD2A MUTATED 0 1 5
FAHD2A WILD-TYPE 70 119 95
'FAHD2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S5919.  Gene #566: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAHD2A MUTATED 0 0 0 1 0 5 0 0 0
FAHD2A WILD-TYPE 41 26 30 28 39 64 20 14 22
'FAHD2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S5920.  Gene #566: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAHD2A MUTATED 1 3 1 1
FAHD2A WILD-TYPE 99 69 71 120
'FAHD2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0271 (Fisher's exact test), Q value = 0.17

Table S5921.  Gene #566: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAHD2A MUTATED 0 1 4 0 1
FAHD2A WILD-TYPE 59 74 70 119 37

Figure S1747.  Get High-res Image Gene #566: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAHD2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.1

Table S5922.  Gene #566: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAHD2A MUTATED 0 5 0 0 1
FAHD2A WILD-TYPE 51 71 61 71 94

Figure S1748.  Get High-res Image Gene #566: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FAHD2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.92

Table S5923.  Gene #566: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAHD2A MUTATED 2 1 1 1 0 0 0 1 0
FAHD2A WILD-TYPE 67 47 38 15 53 20 21 37 50
'FAHD2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S5924.  Gene #566: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FAHD2A MUTATED 1 0 0 0 2 0
FAHD2A WILD-TYPE 12 16 14 11 9 9
'FAHD2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S5925.  Gene #566: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FAHD2A MUTATED 0 0 0 1 0 0 1 1 0
FAHD2A WILD-TYPE 11 7 7 8 8 7 10 8 5
'SPANXN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 0.25

Table S5926.  Gene #567: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SPANXN2 MUTATED 3 0 0 0 0
SPANXN2 WILD-TYPE 29 18 46 27 23
'SPANXN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0382 (Fisher's exact test), Q value = 0.21

Table S5927.  Gene #567: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SPANXN2 MUTATED 3 0 0
SPANXN2 WILD-TYPE 40 67 36

Figure S1749.  Get High-res Image Gene #567: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SPANXN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.72

Table S5928.  Gene #567: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SPANXN2 MUTATED 0 2 5
SPANXN2 WILD-TYPE 42 171 142
'SPANXN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S5929.  Gene #567: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SPANXN2 MUTATED 3 1 1
SPANXN2 WILD-TYPE 59 72 74
'SPANXN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S5930.  Gene #567: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SPANXN2 MUTATED 0 2 5
SPANXN2 WILD-TYPE 70 118 95
'SPANXN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S5931.  Gene #567: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SPANXN2 MUTATED 0 0 1 0 0 4 1 1 0
SPANXN2 WILD-TYPE 41 26 29 29 39 65 19 13 22
'SPANXN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.93

Table S5932.  Gene #567: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SPANXN2 MUTATED 1 3 1 3
SPANXN2 WILD-TYPE 99 69 71 118
'SPANXN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S5933.  Gene #567: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SPANXN2 MUTATED 0 3 2 0 3
SPANXN2 WILD-TYPE 59 72 72 119 35

Figure S1750.  Get High-res Image Gene #567: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SPANXN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0581 (Fisher's exact test), Q value = 0.26

Table S5934.  Gene #567: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SPANXN2 MUTATED 0 4 0 0 4
SPANXN2 WILD-TYPE 51 72 61 71 91
'SPANXN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S5935.  Gene #567: 'SPANXN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SPANXN2 MUTATED 2 0 0 1 1 0 0 3 1
SPANXN2 WILD-TYPE 67 48 39 15 52 20 21 35 49
'KIF21A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.043 (Fisher's exact test), Q value = 0.22

Table S5936.  Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIF21A MUTATED 4 1 0 1 0
KIF21A WILD-TYPE 28 17 46 26 23

Figure S1751.  Get High-res Image Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIF21A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S5937.  Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIF21A MUTATED 4 0 2
KIF21A WILD-TYPE 39 67 34

Figure S1752.  Get High-res Image Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KIF21A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0069

Table S5938.  Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIF21A MUTATED 1 3 19
KIF21A WILD-TYPE 41 170 128

Figure S1753.  Get High-res Image Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIF21A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.056 (Fisher's exact test), Q value = 0.25

Table S5939.  Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIF21A MUTATED 6 2 10
KIF21A WILD-TYPE 56 71 65
'KIF21A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.15

Table S5940.  Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIF21A MUTATED 2 4 12
KIF21A WILD-TYPE 68 116 88

Figure S1754.  Get High-res Image Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KIF21A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S5941.  Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIF21A MUTATED 3 0 0 3 2 5 4 1 0
KIF21A WILD-TYPE 38 26 30 26 37 64 16 13 22
'KIF21A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00909 (Fisher's exact test), Q value = 0.089

Table S5942.  Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIF21A MUTATED 2 9 8 5
KIF21A WILD-TYPE 98 63 64 116

Figure S1755.  Get High-res Image Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIF21A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00143 (Fisher's exact test), Q value = 0.031

Table S5943.  Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIF21A MUTATED 3 3 12 2 4
KIF21A WILD-TYPE 56 72 62 117 34

Figure S1756.  Get High-res Image Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIF21A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S5944.  Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIF21A MUTATED 2 10 3 3 5
KIF21A WILD-TYPE 49 66 58 68 90
'KIF21A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00269 (Fisher's exact test), Q value = 0.044

Table S5945.  Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIF21A MUTATED 3 5 0 5 6 0 0 3 1
KIF21A WILD-TYPE 66 43 39 11 47 20 21 35 49

Figure S1757.  Get High-res Image Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIF21A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0036 (Fisher's exact test), Q value = 0.053

Table S5946.  Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIF21A MUTATED 0 0 1 0 4 0
KIF21A WILD-TYPE 13 16 13 11 7 9

Figure S1758.  Get High-res Image Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KIF21A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S5947.  Gene #568: 'KIF21A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIF21A MUTATED 0 0 0 2 2 1 0 0 0
KIF21A WILD-TYPE 11 7 7 7 6 6 11 9 5
'TAOK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 0.3

Table S5948.  Gene #569: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TAOK3 MUTATED 3 0 0 2 0
TAOK3 WILD-TYPE 29 18 46 25 23
'TAOK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S5949.  Gene #569: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TAOK3 MUTATED 3 1 1
TAOK3 WILD-TYPE 40 66 35
'TAOK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00736 (Fisher's exact test), Q value = 0.08

Table S5950.  Gene #569: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TAOK3 MUTATED 1 4 15
TAOK3 WILD-TYPE 41 169 132

Figure S1759.  Get High-res Image Gene #569: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TAOK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S5951.  Gene #569: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TAOK3 MUTATED 5 2 9
TAOK3 WILD-TYPE 57 71 66
'TAOK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0834 (Fisher's exact test), Q value = 0.31

Table S5952.  Gene #569: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TAOK3 MUTATED 1 5 9
TAOK3 WILD-TYPE 69 115 91
'TAOK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S5953.  Gene #569: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TAOK3 MUTATED 2 0 1 3 3 6 0 0 0
TAOK3 WILD-TYPE 39 26 29 26 36 63 20 14 22
'TAOK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S5954.  Gene #569: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TAOK3 MUTATED 3 7 5 5
TAOK3 WILD-TYPE 97 65 67 116
'TAOK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0292 (Fisher's exact test), Q value = 0.18

Table S5955.  Gene #569: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TAOK3 MUTATED 3 3 9 2 3
TAOK3 WILD-TYPE 56 72 65 117 35

Figure S1760.  Get High-res Image Gene #569: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TAOK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 0.3

Table S5956.  Gene #569: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TAOK3 MUTATED 3 9 2 1 4
TAOK3 WILD-TYPE 48 67 59 70 91
'TAOK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0368 (Fisher's exact test), Q value = 0.2

Table S5957.  Gene #569: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TAOK3 MUTATED 4 4 1 4 2 1 0 3 0
TAOK3 WILD-TYPE 65 44 38 12 51 19 21 35 50

Figure S1761.  Get High-res Image Gene #569: 'TAOK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ANKRD17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.25

Table S5958.  Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ANKRD17 MUTATED 5 0 1 2 0
ANKRD17 WILD-TYPE 27 18 45 25 23
'ANKRD17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.12

Table S5959.  Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ANKRD17 MUTATED 6 2 0
ANKRD17 WILD-TYPE 37 65 36

Figure S1762.  Get High-res Image Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ANKRD17 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S5960.  Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ANKRD17 MUTATED 0 5 21
ANKRD17 WILD-TYPE 42 168 126

Figure S1763.  Get High-res Image Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ANKRD17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 0.26

Table S5961.  Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ANKRD17 MUTATED 6 2 10
ANKRD17 WILD-TYPE 56 71 65
'ANKRD17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S5962.  Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ANKRD17 MUTATED 4 9 11
ANKRD17 WILD-TYPE 66 111 89
'ANKRD17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S5963.  Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ANKRD17 MUTATED 5 2 1 3 1 8 2 1 1
ANKRD17 WILD-TYPE 36 24 29 26 38 61 18 13 21
'ANKRD17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00388 (Fisher's exact test), Q value = 0.056

Table S5964.  Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ANKRD17 MUTATED 2 12 5 7
ANKRD17 WILD-TYPE 98 60 67 114

Figure S1764.  Get High-res Image Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ANKRD17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00329 (Fisher's exact test), Q value = 0.05

Table S5965.  Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ANKRD17 MUTATED 3 2 11 4 6
ANKRD17 WILD-TYPE 56 73 63 115 32

Figure S1765.  Get High-res Image Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKRD17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S5966.  Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ANKRD17 MUTATED 3 10 3 0 8
ANKRD17 WILD-TYPE 48 66 58 71 87

Figure S1766.  Get High-res Image Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ANKRD17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.009

Table S5967.  Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ANKRD17 MUTATED 2 6 0 6 1 1 1 5 2
ANKRD17 WILD-TYPE 67 42 39 10 52 19 20 33 48

Figure S1767.  Get High-res Image Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ANKRD17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S5968.  Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ANKRD17 MUTATED 0 1 0 1 3 1
ANKRD17 WILD-TYPE 13 15 14 10 8 8
'ANKRD17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S5969.  Gene #570: 'ANKRD17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ANKRD17 MUTATED 1 0 1 2 0 0 2 0 0
ANKRD17 WILD-TYPE 10 7 6 7 8 7 9 9 5
'WBP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0024 (Fisher's exact test), Q value = 0.042

Table S5970.  Gene #571: 'WBP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WBP11 MUTATED 0 0 8
WBP11 WILD-TYPE 42 173 139

Figure S1768.  Get High-res Image Gene #571: 'WBP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WBP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 0.24

Table S5971.  Gene #571: 'WBP11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WBP11 MUTATED 2 0 5
WBP11 WILD-TYPE 60 73 70

Figure S1769.  Get High-res Image Gene #571: 'WBP11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'WBP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5972.  Gene #571: 'WBP11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WBP11 MUTATED 1 3 2
WBP11 WILD-TYPE 69 117 98
'WBP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.97

Table S5973.  Gene #571: 'WBP11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WBP11 MUTATED 0 1 0 1 1 2 0 1 0
WBP11 WILD-TYPE 41 25 30 28 38 67 20 13 22
'WBP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 0.22

Table S5974.  Gene #571: 'WBP11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WBP11 MUTATED 1 5 1 1
WBP11 WILD-TYPE 99 67 71 120

Figure S1770.  Get High-res Image Gene #571: 'WBP11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'WBP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.05 (Fisher's exact test), Q value = 0.24

Table S5975.  Gene #571: 'WBP11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WBP11 MUTATED 0 2 5 1 0
WBP11 WILD-TYPE 59 73 69 118 38

Figure S1771.  Get High-res Image Gene #571: 'WBP11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WBP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00551 (Fisher's exact test), Q value = 0.07

Table S5976.  Gene #571: 'WBP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WBP11 MUTATED 1 6 0 1 0
WBP11 WILD-TYPE 50 70 61 70 95

Figure S1772.  Get High-res Image Gene #571: 'WBP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'WBP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0797 (Fisher's exact test), Q value = 0.31

Table S5977.  Gene #571: 'WBP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WBP11 MUTATED 4 0 1 2 1 0 0 0 0
WBP11 WILD-TYPE 65 48 38 14 52 20 21 38 50
'HNRNPH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S5978.  Gene #572: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HNRNPH3 MUTATED 1 1 2
HNRNPH3 WILD-TYPE 41 172 145
'HNRNPH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S5979.  Gene #572: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HNRNPH3 MUTATED 0 0 3
HNRNPH3 WILD-TYPE 62 73 72
'HNRNPH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S5980.  Gene #572: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HNRNPH3 MUTATED 0 2 1
HNRNPH3 WILD-TYPE 70 118 99
'HNRNPH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S5981.  Gene #572: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HNRNPH3 MUTATED 0 0 0 2 0 1 0 0 0
HNRNPH3 WILD-TYPE 41 26 30 27 39 68 20 14 22
'HNRNPH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 0.28

Table S5982.  Gene #572: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HNRNPH3 MUTATED 0 3 0 1
HNRNPH3 WILD-TYPE 100 69 72 120
'HNRNPH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.47

Table S5983.  Gene #572: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HNRNPH3 MUTATED 0 0 3 1 0
HNRNPH3 WILD-TYPE 59 75 71 118 38
'HNRNPH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0944 (Fisher's exact test), Q value = 0.34

Table S5984.  Gene #572: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HNRNPH3 MUTATED 0 3 0 1 0
HNRNPH3 WILD-TYPE 51 73 61 70 95
'HNRNPH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00416 (Fisher's exact test), Q value = 0.058

Table S5985.  Gene #572: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HNRNPH3 MUTATED 0 1 0 2 0 0 1 0 0
HNRNPH3 WILD-TYPE 69 47 39 14 53 20 20 38 50

Figure S1773.  Get High-res Image Gene #572: 'HNRNPH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ENTPD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S5986.  Gene #573: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ENTPD4 MUTATED 2 0 0 1 0
ENTPD4 WILD-TYPE 30 18 46 26 23
'ENTPD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S5987.  Gene #573: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ENTPD4 MUTATED 2 1 0
ENTPD4 WILD-TYPE 41 66 36
'ENTPD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00819 (Fisher's exact test), Q value = 0.085

Table S5988.  Gene #573: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ENTPD4 MUTATED 1 3 13
ENTPD4 WILD-TYPE 41 170 134

Figure S1774.  Get High-res Image Gene #573: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ENTPD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.55

Table S5989.  Gene #573: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ENTPD4 MUTATED 6 2 4
ENTPD4 WILD-TYPE 56 71 71
'ENTPD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.75

Table S5990.  Gene #573: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ENTPD4 MUTATED 3 4 7
ENTPD4 WILD-TYPE 67 116 93
'ENTPD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S5991.  Gene #573: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ENTPD4 MUTATED 1 2 2 1 2 5 1 0 0
ENTPD4 WILD-TYPE 40 24 28 28 37 64 19 14 22
'ENTPD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S5992.  Gene #573: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ENTPD4 MUTATED 3 5 5 4
ENTPD4 WILD-TYPE 97 67 67 117
'ENTPD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00393 (Fisher's exact test), Q value = 0.056

Table S5993.  Gene #573: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ENTPD4 MUTATED 2 2 9 1 3
ENTPD4 WILD-TYPE 57 73 65 118 35

Figure S1775.  Get High-res Image Gene #573: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ENTPD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S5994.  Gene #573: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ENTPD4 MUTATED 2 6 4 0 5
ENTPD4 WILD-TYPE 49 70 57 71 90
'ENTPD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0443 (Fisher's exact test), Q value = 0.22

Table S5995.  Gene #573: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ENTPD4 MUTATED 4 3 2 3 0 1 2 2 0
ENTPD4 WILD-TYPE 65 45 37 13 53 19 19 36 50

Figure S1776.  Get High-res Image Gene #573: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ENTPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S5996.  Gene #573: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ENTPD4 MUTATED 0 1 1 1 1 0
ENTPD4 WILD-TYPE 13 15 13 10 10 9
'ENTPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S5997.  Gene #573: 'ENTPD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ENTPD4 MUTATED 1 0 0 1 0 0 2 0 0
ENTPD4 WILD-TYPE 10 7 7 8 8 7 9 9 5
'DDX3X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S5998.  Gene #574: 'DDX3X MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DDX3X MUTATED 1 2 7
DDX3X WILD-TYPE 41 171 140
'DDX3X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S5999.  Gene #574: 'DDX3X MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DDX3X MUTATED 4 1 3
DDX3X WILD-TYPE 58 72 72
'DDX3X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S6000.  Gene #574: 'DDX3X MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DDX3X MUTATED 1 2 3
DDX3X WILD-TYPE 69 118 97
'DDX3X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S6001.  Gene #574: 'DDX3X MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DDX3X MUTATED 1 0 1 0 2 2 0 0 0
DDX3X WILD-TYPE 40 26 29 29 37 67 20 14 22
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.98

Table S6002.  Gene #574: 'DDX3X MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DDX3X MUTATED 3 2 3 2
DDX3X WILD-TYPE 97 70 69 119
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S6003.  Gene #574: 'DDX3X MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DDX3X MUTATED 2 2 4 2 0
DDX3X WILD-TYPE 57 73 70 117 38
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S6004.  Gene #574: 'DDX3X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DDX3X MUTATED 1 3 2 2 2
DDX3X WILD-TYPE 50 73 59 69 93
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S6005.  Gene #574: 'DDX3X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DDX3X MUTATED 2 3 0 0 3 1 0 1 0
DDX3X WILD-TYPE 67 45 39 16 50 19 21 37 50
'MCCC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S6006.  Gene #575: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MCCC1 MUTATED 4 0 0 2 0
MCCC1 WILD-TYPE 28 18 46 25 23

Figure S1777.  Get High-res Image Gene #575: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MCCC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0869 (Fisher's exact test), Q value = 0.32

Table S6007.  Gene #575: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MCCC1 MUTATED 4 2 0
MCCC1 WILD-TYPE 39 65 36
'MCCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.21

Table S6008.  Gene #575: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MCCC1 MUTATED 1 4 12
MCCC1 WILD-TYPE 41 169 135

Figure S1778.  Get High-res Image Gene #575: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MCCC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S6009.  Gene #575: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MCCC1 MUTATED 3 5 2
MCCC1 WILD-TYPE 59 68 73
'MCCC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S6010.  Gene #575: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MCCC1 MUTATED 1 9 4
MCCC1 WILD-TYPE 69 111 96
'MCCC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S6011.  Gene #575: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MCCC1 MUTATED 0 0 4 2 1 3 2 0 2
MCCC1 WILD-TYPE 41 26 26 27 38 66 18 14 20
'MCCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S6012.  Gene #575: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MCCC1 MUTATED 5 5 0 7
MCCC1 WILD-TYPE 95 67 72 114
'MCCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.012

Table S6013.  Gene #575: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MCCC1 MUTATED 0 7 3 1 6
MCCC1 WILD-TYPE 59 68 71 118 32

Figure S1779.  Get High-res Image Gene #575: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MCCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S6014.  Gene #575: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MCCC1 MUTATED 3 4 1 1 7
MCCC1 WILD-TYPE 48 72 60 70 88
'MCCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00414 (Fisher's exact test), Q value = 0.058

Table S6015.  Gene #575: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MCCC1 MUTATED 3 0 0 2 1 4 1 4 1
MCCC1 WILD-TYPE 66 48 39 14 52 16 20 34 49

Figure S1780.  Get High-res Image Gene #575: 'MCCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6016.  Gene #576: 'MDH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MDH1 MUTATED 1 4 3
MDH1 WILD-TYPE 41 169 144
'MDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.79

Table S6017.  Gene #576: 'MDH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MDH1 MUTATED 3 3 1
MDH1 WILD-TYPE 59 70 74
'MDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S6018.  Gene #576: 'MDH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MDH1 MUTATED 0 3 5
MDH1 WILD-TYPE 70 117 95
'MDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S6019.  Gene #576: 'MDH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MDH1 MUTATED 2 0 1 1 1 2 0 1 0
MDH1 WILD-TYPE 39 26 29 28 38 67 20 13 22
'MDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S6020.  Gene #576: 'MDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MDH1 MUTATED 2 2 3 1
MDH1 WILD-TYPE 98 70 69 120
'MDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.068 (Fisher's exact test), Q value = 0.28

Table S6021.  Gene #576: 'MDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MDH1 MUTATED 3 3 1 0 1
MDH1 WILD-TYPE 56 72 73 119 37
'MDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.86

Table S6022.  Gene #576: 'MDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MDH1 MUTATED 3 1 1 1 2
MDH1 WILD-TYPE 48 75 60 70 93
'MDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.96

Table S6023.  Gene #576: 'MDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MDH1 MUTATED 4 1 0 0 1 1 0 0 1
MDH1 WILD-TYPE 65 47 39 16 52 19 21 38 49
'MDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S6024.  Gene #576: 'MDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MDH1 MUTATED 0 0 1 1 0 1
MDH1 WILD-TYPE 13 16 13 10 11 8
'MDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S6025.  Gene #576: 'MDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MDH1 MUTATED 1 0 0 0 1 0 0 1 0
MDH1 WILD-TYPE 10 7 7 9 7 7 11 8 5
'ARHGAP25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S6026.  Gene #577: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARHGAP25 MUTATED 0 5 5
ARHGAP25 WILD-TYPE 42 168 142
'ARHGAP25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.18

Table S6027.  Gene #577: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARHGAP25 MUTATED 5 3 0
ARHGAP25 WILD-TYPE 57 70 75

Figure S1781.  Get High-res Image Gene #577: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ARHGAP25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00286 (Fisher's exact test), Q value = 0.046

Table S6028.  Gene #577: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARHGAP25 MUTATED 0 1 8
ARHGAP25 WILD-TYPE 70 119 92

Figure S1782.  Get High-res Image Gene #577: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ARHGAP25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S6029.  Gene #577: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARHGAP25 MUTATED 2 0 1 0 1 3 1 0 1
ARHGAP25 WILD-TYPE 39 26 29 29 38 66 19 14 21
'ARHGAP25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S6030.  Gene #577: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARHGAP25 MUTATED 3 1 4 2
ARHGAP25 WILD-TYPE 97 71 68 119
'ARHGAP25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0227 (Fisher's exact test), Q value = 0.16

Table S6031.  Gene #577: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARHGAP25 MUTATED 3 4 1 0 2
ARHGAP25 WILD-TYPE 56 71 73 119 36

Figure S1783.  Get High-res Image Gene #577: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGAP25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S6032.  Gene #577: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARHGAP25 MUTATED 1 3 2 1 3
ARHGAP25 WILD-TYPE 50 73 59 70 92
'ARHGAP25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0865 (Fisher's exact test), Q value = 0.32

Table S6033.  Gene #577: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARHGAP25 MUTATED 0 4 2 0 0 1 0 2 1
ARHGAP25 WILD-TYPE 69 44 37 16 53 19 21 36 49
'ARHGAP25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S6034.  Gene #577: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ARHGAP25 MUTATED 1 0 0 2 0 1
ARHGAP25 WILD-TYPE 12 16 14 9 11 8
'ARHGAP25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S6035.  Gene #577: 'ARHGAP25 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ARHGAP25 MUTATED 0 0 1 0 0 0 1 2 0
ARHGAP25 WILD-TYPE 11 7 6 9 8 7 10 7 5
'SPEN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S6036.  Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SPEN MUTATED 7 0 1 2 1
SPEN WILD-TYPE 25 18 45 25 22

Figure S1784.  Get High-res Image Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SPEN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00714 (Fisher's exact test), Q value = 0.079

Table S6037.  Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SPEN MUTATED 8 2 1
SPEN WILD-TYPE 35 65 35

Figure S1785.  Get High-res Image Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SPEN MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0053

Table S6038.  Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SPEN MUTATED 1 6 24
SPEN WILD-TYPE 41 167 123

Figure S1786.  Get High-res Image Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SPEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.18

Table S6039.  Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SPEN MUTATED 5 3 13
SPEN WILD-TYPE 57 70 62

Figure S1787.  Get High-res Image Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SPEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S6040.  Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SPEN MUTATED 4 8 13
SPEN WILD-TYPE 66 112 87
'SPEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S6041.  Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SPEN MUTATED 3 1 2 2 4 9 3 0 1
SPEN WILD-TYPE 38 25 28 27 35 60 17 14 21
'SPEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00557 (Fisher's exact test), Q value = 0.07

Table S6042.  Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SPEN MUTATED 2 12 7 10
SPEN WILD-TYPE 98 60 65 111

Figure S1788.  Get High-res Image Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SPEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00598 (Fisher's exact test), Q value = 0.073

Table S6043.  Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SPEN MUTATED 3 4 12 5 7
SPEN WILD-TYPE 56 71 62 114 31

Figure S1789.  Get High-res Image Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SPEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S6044.  Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SPEN MUTATED 4 10 2 3 11
SPEN WILD-TYPE 47 66 59 68 84
'SPEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00142 (Fisher's exact test), Q value = 0.031

Table S6045.  Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SPEN MUTATED 3 6 0 4 3 2 4 7 1
SPEN WILD-TYPE 66 42 39 12 50 18 17 31 49

Figure S1790.  Get High-res Image Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SPEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S6046.  Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SPEN MUTATED 1 1 2 0 1 0
SPEN WILD-TYPE 12 15 12 11 10 9
'SPEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 0.3

Table S6047.  Gene #578: 'SPEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SPEN MUTATED 0 0 1 0 0 0 3 0 1
SPEN WILD-TYPE 11 7 6 9 8 7 8 9 4
'GPR75 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.54

Table S6048.  Gene #579: 'GPR75 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GPR75 MUTATED 2 2 4
GPR75 WILD-TYPE 40 171 143
'GPR75 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.84

Table S6049.  Gene #579: 'GPR75 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GPR75 MUTATED 3 1 3
GPR75 WILD-TYPE 59 72 72
'GPR75 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S6050.  Gene #579: 'GPR75 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GPR75 MUTATED 0 3 5
GPR75 WILD-TYPE 70 117 95
'GPR75 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S6051.  Gene #579: 'GPR75 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GPR75 MUTATED 1 0 0 2 1 2 2 0 0
GPR75 WILD-TYPE 40 26 30 27 38 67 18 14 22
'GPR75 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.49

Table S6052.  Gene #579: 'GPR75 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GPR75 MUTATED 1 3 3 1
GPR75 WILD-TYPE 99 69 69 120
'GPR75 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0551 (Fisher's exact test), Q value = 0.25

Table S6053.  Gene #579: 'GPR75 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GPR75 MUTATED 2 1 4 0 1
GPR75 WILD-TYPE 57 74 70 119 37
'GPR75 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.19

Table S6054.  Gene #579: 'GPR75 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GPR75 MUTATED 0 5 1 2 0
GPR75 WILD-TYPE 51 71 60 69 95

Figure S1791.  Get High-res Image Gene #579: 'GPR75 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GPR75 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.17

Table S6055.  Gene #579: 'GPR75 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GPR75 MUTATED 1 4 0 2 1 0 0 0 0
GPR75 WILD-TYPE 68 44 39 14 52 20 21 38 50

Figure S1792.  Get High-res Image Gene #579: 'GPR75 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HERC5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S6056.  Gene #580: 'HERC5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HERC5 MUTATED 2 0 1 1 1
HERC5 WILD-TYPE 30 18 45 26 22
'HERC5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S6057.  Gene #580: 'HERC5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HERC5 MUTATED 2 2 1
HERC5 WILD-TYPE 41 65 35
'HERC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S6058.  Gene #580: 'HERC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HERC5 MUTATED 0 9 9
HERC5 WILD-TYPE 42 164 138
'HERC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S6059.  Gene #580: 'HERC5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HERC5 MUTATED 3 4 6
HERC5 WILD-TYPE 59 69 69
'HERC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S6060.  Gene #580: 'HERC5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HERC5 MUTATED 3 10 5
HERC5 WILD-TYPE 67 110 95
'HERC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S6061.  Gene #580: 'HERC5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HERC5 MUTATED 4 1 3 3 3 3 0 0 1
HERC5 WILD-TYPE 37 25 27 26 36 66 20 14 21
'HERC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S6062.  Gene #580: 'HERC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HERC5 MUTATED 6 5 1 6
HERC5 WILD-TYPE 94 67 71 115
'HERC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S6063.  Gene #580: 'HERC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HERC5 MUTATED 3 5 4 4 2
HERC5 WILD-TYPE 56 70 70 115 36
'HERC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S6064.  Gene #580: 'HERC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HERC5 MUTATED 2 5 3 1 7
HERC5 WILD-TYPE 49 71 58 70 88
'HERC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S6065.  Gene #580: 'HERC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HERC5 MUTATED 4 4 1 0 2 1 0 3 3
HERC5 WILD-TYPE 65 44 38 16 51 19 21 35 47
'AKR1C4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S6066.  Gene #581: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AKR1C4 MUTATED 0 5 4
AKR1C4 WILD-TYPE 42 168 143
'AKR1C4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S6067.  Gene #581: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AKR1C4 MUTATED 3 2 2
AKR1C4 WILD-TYPE 59 71 73
'AKR1C4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S6068.  Gene #581: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AKR1C4 MUTATED 1 2 3
AKR1C4 WILD-TYPE 69 118 97
'AKR1C4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S6069.  Gene #581: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AKR1C4 MUTATED 0 0 2 0 0 2 0 0 2
AKR1C4 WILD-TYPE 41 26 28 29 39 67 20 14 20
'AKR1C4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S6070.  Gene #581: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AKR1C4 MUTATED 4 2 2 1
AKR1C4 WILD-TYPE 96 70 70 120
'AKR1C4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S6071.  Gene #581: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AKR1C4 MUTATED 1 4 2 1 1
AKR1C4 WILD-TYPE 58 71 72 118 37
'AKR1C4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S6072.  Gene #581: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AKR1C4 MUTATED 1 3 2 2 1
AKR1C4 WILD-TYPE 50 73 59 69 94
'AKR1C4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S6073.  Gene #581: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AKR1C4 MUTATED 3 2 1 0 0 1 1 1 0
AKR1C4 WILD-TYPE 66 46 38 16 53 19 20 37 50
'AKR1C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S6074.  Gene #581: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AKR1C4 MUTATED 1 1 0 0 1 1
AKR1C4 WILD-TYPE 12 15 14 11 10 8
'AKR1C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S6075.  Gene #581: 'AKR1C4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AKR1C4 MUTATED 0 1 0 1 0 0 1 1 0
AKR1C4 WILD-TYPE 11 6 7 8 8 7 10 8 5
'LIG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0016 (Fisher's exact test), Q value = 0.033

Table S6076.  Gene #582: 'LIG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LIG1 MUTATED 0 0 0 4 0
LIG1 WILD-TYPE 32 18 46 23 23

Figure S1793.  Get High-res Image Gene #582: 'LIG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LIG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S6077.  Gene #582: 'LIG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LIG1 MUTATED 2 2 0
LIG1 WILD-TYPE 41 65 36
'LIG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S6078.  Gene #582: 'LIG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LIG1 MUTATED 2 4 9
LIG1 WILD-TYPE 40 169 138
'LIG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.74

Table S6079.  Gene #582: 'LIG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LIG1 MUTATED 5 2 4
LIG1 WILD-TYPE 57 71 71
'LIG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.46

Table S6080.  Gene #582: 'LIG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LIG1 MUTATED 1 7 8
LIG1 WILD-TYPE 69 113 92
'LIG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.92

Table S6081.  Gene #582: 'LIG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LIG1 MUTATED 2 0 3 2 1 5 2 1 0
LIG1 WILD-TYPE 39 26 27 27 38 64 18 13 22
'LIG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S6082.  Gene #582: 'LIG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LIG1 MUTATED 3 6 3 4
LIG1 WILD-TYPE 97 66 69 117
'LIG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0747 (Fisher's exact test), Q value = 0.3

Table S6083.  Gene #582: 'LIG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LIG1 MUTATED 2 2 7 2 3
LIG1 WILD-TYPE 57 73 67 117 35
'LIG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S6084.  Gene #582: 'LIG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LIG1 MUTATED 0 6 2 3 4
LIG1 WILD-TYPE 51 70 59 68 91
'LIG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S6085.  Gene #582: 'LIG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LIG1 MUTATED 5 2 1 2 1 2 0 2 0
LIG1 WILD-TYPE 64 46 38 14 52 18 21 36 50
'LIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S6086.  Gene #582: 'LIG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LIG1 MUTATED 1 2 1 2 0 0
LIG1 WILD-TYPE 12 14 13 9 11 9
'LIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S6087.  Gene #582: 'LIG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LIG1 MUTATED 1 0 0 1 1 1 2 0 0
LIG1 WILD-TYPE 10 7 7 8 7 6 9 9 5
'ARHGEF10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 0.035

Table S6088.  Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ARHGEF10 MUTATED 6 0 0 1 0
ARHGEF10 WILD-TYPE 26 18 46 26 23

Figure S1794.  Get High-res Image Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARHGEF10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0084

Table S6089.  Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ARHGEF10 MUTATED 7 0 0
ARHGEF10 WILD-TYPE 36 67 36

Figure S1795.  Get High-res Image Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARHGEF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0075

Table S6090.  Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARHGEF10 MUTATED 0 4 19
ARHGEF10 WILD-TYPE 42 169 128

Figure S1796.  Get High-res Image Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARHGEF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S6091.  Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARHGEF10 MUTATED 8 3 4
ARHGEF10 WILD-TYPE 54 70 71
'ARHGEF10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0433 (Fisher's exact test), Q value = 0.22

Table S6092.  Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARHGEF10 MUTATED 4 4 12
ARHGEF10 WILD-TYPE 66 116 88

Figure S1797.  Get High-res Image Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ARHGEF10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S6093.  Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARHGEF10 MUTATED 2 1 1 0 3 9 1 2 1
ARHGEF10 WILD-TYPE 39 25 29 29 36 60 19 12 21
'ARHGEF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S6094.  Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARHGEF10 MUTATED 1 7 8 7
ARHGEF10 WILD-TYPE 99 65 64 114

Figure S1798.  Get High-res Image Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ARHGEF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00204 (Fisher's exact test), Q value = 0.038

Table S6095.  Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARHGEF10 MUTATED 3 5 8 1 6
ARHGEF10 WILD-TYPE 56 70 66 118 32

Figure S1799.  Get High-res Image Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGEF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S6096.  Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARHGEF10 MUTATED 2 8 4 0 9
ARHGEF10 WILD-TYPE 49 68 57 71 86

Figure S1800.  Get High-res Image Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ARHGEF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0577 (Fisher's exact test), Q value = 0.26

Table S6097.  Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARHGEF10 MUTATED 3 6 0 2 2 2 2 5 1
ARHGEF10 WILD-TYPE 66 42 39 14 51 18 19 33 49
'ARHGEF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6098.  Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ARHGEF10 MUTATED 1 1 1 1 1 0
ARHGEF10 WILD-TYPE 12 15 13 10 10 9
'ARHGEF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.46

Table S6099.  Gene #583: 'ARHGEF10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ARHGEF10 MUTATED 0 0 1 0 1 0 3 0 0
ARHGEF10 WILD-TYPE 11 7 6 9 7 7 8 9 5
'OVCH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 0.2

Table S6100.  Gene #584: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OVCH1 MUTATED 3 0 0 3 0
OVCH1 WILD-TYPE 29 18 46 24 23

Figure S1801.  Get High-res Image Gene #584: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'OVCH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S6101.  Gene #584: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OVCH1 MUTATED 3 2 1
OVCH1 WILD-TYPE 40 65 35
'OVCH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S6102.  Gene #584: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OVCH1 MUTATED 1 6 15
OVCH1 WILD-TYPE 41 167 132

Figure S1802.  Get High-res Image Gene #584: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OVCH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S6103.  Gene #584: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OVCH1 MUTATED 3 6 7
OVCH1 WILD-TYPE 59 67 68
'OVCH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.37

Table S6104.  Gene #584: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OVCH1 MUTATED 3 4 10
OVCH1 WILD-TYPE 67 116 90
'OVCH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S6105.  Gene #584: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OVCH1 MUTATED 2 1 1 1 2 6 1 0 3
OVCH1 WILD-TYPE 39 25 29 28 37 63 19 14 19
'OVCH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S6106.  Gene #584: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OVCH1 MUTATED 4 7 6 5
OVCH1 WILD-TYPE 96 65 66 116
'OVCH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.5

Table S6107.  Gene #584: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OVCH1 MUTATED 5 4 7 3 3
OVCH1 WILD-TYPE 54 71 67 116 35
'OVCH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S6108.  Gene #584: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OVCH1 MUTATED 4 8 3 1 5
OVCH1 WILD-TYPE 47 68 58 70 90
'OVCH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00958 (Fisher's exact test), Q value = 0.092

Table S6109.  Gene #584: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OVCH1 MUTATED 5 2 0 4 5 2 0 3 0
OVCH1 WILD-TYPE 64 46 39 12 48 18 21 35 50

Figure S1803.  Get High-res Image Gene #584: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OVCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S6110.  Gene #584: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OVCH1 MUTATED 0 0 0 1 2 1
OVCH1 WILD-TYPE 13 16 14 10 9 8
'OVCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.97

Table S6111.  Gene #584: 'OVCH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OVCH1 MUTATED 1 0 1 0 1 1 0 0 0
OVCH1 WILD-TYPE 10 7 6 9 7 6 11 9 5
'RRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S6112.  Gene #585: 'RRS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RRS1 MUTATED 0 1 3
RRS1 WILD-TYPE 42 172 144
'RRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6113.  Gene #585: 'RRS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RRS1 MUTATED 1 1 2
RRS1 WILD-TYPE 61 72 73
'RRS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S6114.  Gene #585: 'RRS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RRS1 MUTATED 0 0 4
RRS1 WILD-TYPE 70 120 96

Figure S1804.  Get High-res Image Gene #585: 'RRS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RRS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S6115.  Gene #585: 'RRS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RRS1 MUTATED 0 0 0 0 0 3 1 0 0
RRS1 WILD-TYPE 41 26 30 29 39 66 19 14 22
'RRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S6116.  Gene #585: 'RRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RRS1 MUTATED 1 2 1 0
RRS1 WILD-TYPE 99 70 71 121
'RRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0431 (Fisher's exact test), Q value = 0.22

Table S6117.  Gene #585: 'RRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RRS1 MUTATED 1 0 3 0 0
RRS1 WILD-TYPE 58 75 71 119 38

Figure S1805.  Get High-res Image Gene #585: 'RRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S6118.  Gene #585: 'RRS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RRS1 MUTATED 1 2 1 0 0
RRS1 WILD-TYPE 50 74 60 71 95
'RRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.21

Table S6119.  Gene #585: 'RRS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RRS1 MUTATED 1 1 0 2 0 0 0 0 0
RRS1 WILD-TYPE 68 47 39 14 53 20 21 38 50

Figure S1806.  Get High-res Image Gene #585: 'RRS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RFXAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.91

Table S6120.  Gene #586: 'RFXAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RFXAP MUTATED 1 2 3
RFXAP WILD-TYPE 41 171 144
'RFXAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S6121.  Gene #586: 'RFXAP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RFXAP MUTATED 4 1 0
RFXAP WILD-TYPE 58 72 75

Figure S1807.  Get High-res Image Gene #586: 'RFXAP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RFXAP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.61

Table S6122.  Gene #586: 'RFXAP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RFXAP MUTATED 1 1 4
RFXAP WILD-TYPE 69 119 96
'RFXAP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S6123.  Gene #586: 'RFXAP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RFXAP MUTATED 3 1 0 0 0 2 0 0 0
RFXAP WILD-TYPE 38 25 30 29 39 67 20 14 22
'RFXAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S6124.  Gene #586: 'RFXAP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RFXAP MUTATED 1 1 3 1
RFXAP WILD-TYPE 99 71 69 120
'RFXAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.9

Table S6125.  Gene #586: 'RFXAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RFXAP MUTATED 2 1 2 1 0
RFXAP WILD-TYPE 57 74 72 118 38
'RFXAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.89

Table S6126.  Gene #586: 'RFXAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RFXAP MUTATED 1 2 2 0 1
RFXAP WILD-TYPE 50 74 59 71 94
'RFXAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S6127.  Gene #586: 'RFXAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RFXAP MUTATED 1 3 1 0 1 0 0 0 0
RFXAP WILD-TYPE 68 45 38 16 52 20 21 38 50
'RBAK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S6128.  Gene #587: 'RBAK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RBAK MUTATED 1 0 0 1 1
RBAK WILD-TYPE 31 18 46 26 22
'RBAK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S6129.  Gene #587: 'RBAK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RBAK MUTATED 1 2 0
RBAK WILD-TYPE 42 65 36
'RBAK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S6130.  Gene #587: 'RBAK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RBAK MUTATED 1 5 11
RBAK WILD-TYPE 41 168 136
'RBAK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S6131.  Gene #587: 'RBAK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RBAK MUTATED 6 2 6
RBAK WILD-TYPE 56 71 69
'RBAK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S6132.  Gene #587: 'RBAK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RBAK MUTATED 1 5 8
RBAK WILD-TYPE 69 115 92
'RBAK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S6133.  Gene #587: 'RBAK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RBAK MUTATED 1 1 1 1 0 4 3 0 3
RBAK WILD-TYPE 40 25 29 28 39 65 17 14 19
'RBAK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S6134.  Gene #587: 'RBAK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RBAK MUTATED 3 8 4 2
RBAK WILD-TYPE 97 64 68 119

Figure S1808.  Get High-res Image Gene #587: 'RBAK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RBAK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S6135.  Gene #587: 'RBAK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RBAK MUTATED 4 3 6 3 1
RBAK WILD-TYPE 55 72 68 116 37
'RBAK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.62

Table S6136.  Gene #587: 'RBAK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RBAK MUTATED 4 6 2 1 4
RBAK WILD-TYPE 47 70 59 70 91
'RBAK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0742 (Fisher's exact test), Q value = 0.3

Table S6137.  Gene #587: 'RBAK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RBAK MUTATED 1 3 1 2 2 4 0 2 2
RBAK WILD-TYPE 68 45 38 14 51 16 21 36 48
'RBAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.65

Table S6138.  Gene #587: 'RBAK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RBAK MUTATED 0 1 0 1 2 0
RBAK WILD-TYPE 13 15 14 10 9 9
'RBAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S6139.  Gene #587: 'RBAK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RBAK MUTATED 0 1 0 1 0 0 1 1 0
RBAK WILD-TYPE 11 6 7 8 8 7 10 8 5
'ZHX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S6140.  Gene #588: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZHX1 MUTATED 2 2 5
ZHX1 WILD-TYPE 40 171 142
'ZHX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S6141.  Gene #588: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZHX1 MUTATED 4 2 2
ZHX1 WILD-TYPE 58 71 73
'ZHX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S6142.  Gene #588: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZHX1 MUTATED 1 4 3
ZHX1 WILD-TYPE 69 116 97
'ZHX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S6143.  Gene #588: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZHX1 MUTATED 2 1 1 1 0 2 0 1 0
ZHX1 WILD-TYPE 39 25 29 28 39 67 20 13 22
'ZHX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.98

Table S6144.  Gene #588: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZHX1 MUTATED 4 1 2 2
ZHX1 WILD-TYPE 96 71 70 119
'ZHX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.92

Table S6145.  Gene #588: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZHX1 MUTATED 3 2 2 2 0
ZHX1 WILD-TYPE 56 73 72 117 38
'ZHX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.986 (Fisher's exact test), Q value = 1

Table S6146.  Gene #588: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZHX1 MUTATED 1 2 2 2 2
ZHX1 WILD-TYPE 50 74 59 69 93
'ZHX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.8

Table S6147.  Gene #588: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZHX1 MUTATED 2 2 2 1 0 1 0 0 1
ZHX1 WILD-TYPE 67 46 37 15 53 19 21 38 49
'ZHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.65

Table S6148.  Gene #588: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZHX1 MUTATED 0 1 0 2 1 0
ZHX1 WILD-TYPE 13 15 14 9 10 9
'ZHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S6149.  Gene #588: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZHX1 MUTATED 0 0 0 1 0 0 3 0 0
ZHX1 WILD-TYPE 11 7 7 8 8 7 8 9 5
'DOCK10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S6150.  Gene #589: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DOCK10 MUTATED 5 0 1 2 1
DOCK10 WILD-TYPE 27 18 45 25 22
'DOCK10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0454 (Fisher's exact test), Q value = 0.23

Table S6151.  Gene #589: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DOCK10 MUTATED 5 1 3
DOCK10 WILD-TYPE 38 66 33

Figure S1809.  Get High-res Image Gene #589: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DOCK10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.12

Table S6152.  Gene #589: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DOCK10 MUTATED 2 6 17
DOCK10 WILD-TYPE 40 167 130

Figure S1810.  Get High-res Image Gene #589: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DOCK10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S6153.  Gene #589: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DOCK10 MUTATED 4 4 8
DOCK10 WILD-TYPE 58 69 67
'DOCK10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S6154.  Gene #589: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DOCK10 MUTATED 5 7 8
DOCK10 WILD-TYPE 65 113 92
'DOCK10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 0.95

Table S6155.  Gene #589: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DOCK10 MUTATED 4 0 2 1 3 6 3 0 1
DOCK10 WILD-TYPE 37 26 28 28 36 63 17 14 21
'DOCK10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.89

Table S6156.  Gene #589: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DOCK10 MUTATED 4 5 6 10
DOCK10 WILD-TYPE 96 67 66 111
'DOCK10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S6157.  Gene #589: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DOCK10 MUTATED 2 5 8 5 5
DOCK10 WILD-TYPE 57 70 66 114 33
'DOCK10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S6158.  Gene #589: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DOCK10 MUTATED 1 9 3 4 7
DOCK10 WILD-TYPE 50 67 58 67 88
'DOCK10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 0.95

Table S6159.  Gene #589: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DOCK10 MUTATED 6 4 1 2 4 1 1 4 1
DOCK10 WILD-TYPE 63 44 38 14 49 19 20 34 49
'DOCK10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S6160.  Gene #589: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DOCK10 MUTATED 1 2 0 1 2 1
DOCK10 WILD-TYPE 12 14 14 10 9 8
'DOCK10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S6161.  Gene #589: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DOCK10 MUTATED 2 0 0 0 1 0 3 1 0
DOCK10 WILD-TYPE 9 7 7 9 7 7 8 8 5
'CHEK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0878 (Fisher's exact test), Q value = 0.32

Table S6162.  Gene #590: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CHEK2 MUTATED 0 2 7
CHEK2 WILD-TYPE 42 171 140
'CHEK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S6163.  Gene #590: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CHEK2 MUTATED 5 2 1
CHEK2 WILD-TYPE 57 71 74
'CHEK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.001 (Fisher's exact test), Q value = 0.025

Table S6164.  Gene #590: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CHEK2 MUTATED 0 1 9
CHEK2 WILD-TYPE 70 119 91

Figure S1811.  Get High-res Image Gene #590: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CHEK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.45

Table S6165.  Gene #590: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CHEK2 MUTATED 1 0 1 0 0 7 1 0 0
CHEK2 WILD-TYPE 40 26 29 29 39 62 19 14 22
'CHEK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S6166.  Gene #590: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CHEK2 MUTATED 2 2 4 2
CHEK2 WILD-TYPE 98 70 68 119
'CHEK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0433 (Fisher's exact test), Q value = 0.22

Table S6167.  Gene #590: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CHEK2 MUTATED 1 3 4 0 2
CHEK2 WILD-TYPE 58 72 70 119 36

Figure S1812.  Get High-res Image Gene #590: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHEK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S6168.  Gene #590: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CHEK2 MUTATED 1 4 2 1 1
CHEK2 WILD-TYPE 50 72 59 70 94
'CHEK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0701 (Fisher's exact test), Q value = 0.29

Table S6169.  Gene #590: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CHEK2 MUTATED 3 3 0 2 0 0 0 1 0
CHEK2 WILD-TYPE 66 45 39 14 53 20 21 37 50
'USP9X MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.17

Table S6170.  Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
USP9X MUTATED 4 0 0 2 0
USP9X WILD-TYPE 28 18 46 25 23

Figure S1813.  Get High-res Image Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'USP9X MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00704 (Fisher's exact test), Q value = 0.079

Table S6171.  Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
USP9X MUTATED 5 0 1
USP9X WILD-TYPE 38 67 35

Figure S1814.  Get High-res Image Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'USP9X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00291 (Fisher's exact test), Q value = 0.047

Table S6172.  Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
USP9X MUTATED 4 6 20
USP9X WILD-TYPE 38 167 127

Figure S1815.  Get High-res Image Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP9X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 0.97

Table S6173.  Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
USP9X MUTATED 6 8 11
USP9X WILD-TYPE 56 65 64
'USP9X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S6174.  Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
USP9X MUTATED 4 10 12
USP9X WILD-TYPE 66 110 88
'USP9X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0485 (Fisher's exact test), Q value = 0.24

Table S6175.  Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
USP9X MUTATED 0 3 0 4 5 9 3 0 2
USP9X WILD-TYPE 41 23 30 25 34 60 17 14 20

Figure S1816.  Get High-res Image Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'USP9X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S6176.  Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
USP9X MUTATED 7 11 6 7
USP9X WILD-TYPE 93 61 66 114
'USP9X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.01

Table S6177.  Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
USP9X MUTATED 3 7 14 2 5
USP9X WILD-TYPE 56 68 60 117 33

Figure S1817.  Get High-res Image Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP9X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S6178.  Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
USP9X MUTATED 5 14 2 3 6
USP9X WILD-TYPE 46 62 59 68 89

Figure S1818.  Get High-res Image Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'USP9X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S6179.  Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
USP9X MUTATED 7 4 2 5 4 1 0 4 3
USP9X WILD-TYPE 62 44 37 11 49 19 21 34 47
'USP9X MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S6180.  Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
USP9X MUTATED 0 0 2 0 3 0
USP9X WILD-TYPE 13 16 12 11 8 9

Figure S1819.  Get High-res Image Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'USP9X MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.55

Table S6181.  Gene #591: 'USP9X MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
USP9X MUTATED 0 0 0 1 1 0 3 0 0
USP9X WILD-TYPE 11 7 7 8 7 7 8 9 5
'OR5B2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S6182.  Gene #592: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR5B2 MUTATED 1 4 7
OR5B2 WILD-TYPE 41 169 140
'OR5B2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S6183.  Gene #592: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR5B2 MUTATED 4 4 2
OR5B2 WILD-TYPE 58 69 73
'OR5B2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S6184.  Gene #592: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR5B2 MUTATED 1 8 2
OR5B2 WILD-TYPE 69 112 98
'OR5B2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.97

Table S6185.  Gene #592: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR5B2 MUTATED 1 2 1 1 0 4 1 1 0
OR5B2 WILD-TYPE 40 24 29 28 39 65 19 13 22
'OR5B2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S6186.  Gene #592: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR5B2 MUTATED 4 3 2 3
OR5B2 WILD-TYPE 96 69 70 118
'OR5B2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.77

Table S6187.  Gene #592: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR5B2 MUTATED 2 5 2 2 1
OR5B2 WILD-TYPE 57 70 72 117 37
'OR5B2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.96

Table S6188.  Gene #592: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR5B2 MUTATED 2 4 1 1 4
OR5B2 WILD-TYPE 49 72 60 70 91
'OR5B2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S6189.  Gene #592: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR5B2 MUTATED 4 0 1 0 1 3 0 1 2
OR5B2 WILD-TYPE 65 48 38 16 52 17 21 37 48
'OR5B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S6190.  Gene #592: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR5B2 MUTATED 0 1 1 1 0 0
OR5B2 WILD-TYPE 13 15 13 10 11 9
'OR5B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S6191.  Gene #592: 'OR5B2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR5B2 MUTATED 2 0 0 0 0 0 0 1 0
OR5B2 WILD-TYPE 9 7 7 9 8 7 11 8 5
'IFNAR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.65

Table S6192.  Gene #593: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IFNAR1 MUTATED 2 0 0 1 1
IFNAR1 WILD-TYPE 30 18 46 26 22
'IFNAR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S6193.  Gene #593: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IFNAR1 MUTATED 2 1 1
IFNAR1 WILD-TYPE 41 66 35
'IFNAR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6194.  Gene #593: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IFNAR1 MUTATED 0 3 3
IFNAR1 WILD-TYPE 42 170 144
'IFNAR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.95

Table S6195.  Gene #593: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IFNAR1 MUTATED 0 2 1
IFNAR1 WILD-TYPE 62 71 74
'IFNAR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S6196.  Gene #593: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IFNAR1 MUTATED 0 1 4
IFNAR1 WILD-TYPE 70 119 96
'IFNAR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S6197.  Gene #593: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IFNAR1 MUTATED 1 0 1 0 0 2 1 0 0
IFNAR1 WILD-TYPE 40 26 29 29 39 67 19 14 22
'IFNAR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S6198.  Gene #593: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IFNAR1 MUTATED 2 0 1 4
IFNAR1 WILD-TYPE 98 72 71 117
'IFNAR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.92

Table S6199.  Gene #593: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IFNAR1 MUTATED 2 1 0 3 1
IFNAR1 WILD-TYPE 57 74 74 116 37
'IFNAR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.57

Table S6200.  Gene #593: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IFNAR1 MUTATED 2 0 0 2 3
IFNAR1 WILD-TYPE 49 76 61 69 92
'IFNAR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S6201.  Gene #593: 'IFNAR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IFNAR1 MUTATED 2 0 0 0 0 2 1 1 1
IFNAR1 WILD-TYPE 67 48 39 16 53 18 20 37 49
'ALDH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0891 (Fisher's exact test), Q value = 0.32

Table S6202.  Gene #594: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ALDH2 MUTATED 2 2 7
ALDH2 WILD-TYPE 40 171 140
'ALDH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S6203.  Gene #594: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ALDH2 MUTATED 3 2 3
ALDH2 WILD-TYPE 59 71 72
'ALDH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S6204.  Gene #594: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ALDH2 MUTATED 3 2 3
ALDH2 WILD-TYPE 67 118 97
'ALDH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S6205.  Gene #594: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ALDH2 MUTATED 3 0 2 1 0 1 1 0 0
ALDH2 WILD-TYPE 38 26 28 28 39 68 19 14 22
'ALDH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S6206.  Gene #594: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ALDH2 MUTATED 1 5 2 3
ALDH2 WILD-TYPE 99 67 70 118
'ALDH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00657 (Fisher's exact test), Q value = 0.076

Table S6207.  Gene #594: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ALDH2 MUTATED 2 1 5 0 3
ALDH2 WILD-TYPE 57 74 69 119 35

Figure S1820.  Get High-res Image Gene #594: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ALDH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S6208.  Gene #594: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ALDH2 MUTATED 2 3 2 0 4
ALDH2 WILD-TYPE 49 73 59 71 91
'ALDH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00175 (Fisher's exact test), Q value = 0.035

Table S6209.  Gene #594: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ALDH2 MUTATED 1 1 0 2 1 4 0 2 0
ALDH2 WILD-TYPE 68 47 39 14 52 16 21 36 50

Figure S1821.  Get High-res Image Gene #594: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S6210.  Gene #595: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF14 MUTATED 1 0 0 2 0
ZNF14 WILD-TYPE 31 18 46 25 23
'ZNF14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6211.  Gene #595: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF14 MUTATED 1 1 1
ZNF14 WILD-TYPE 42 66 35
'ZNF14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S6212.  Gene #595: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF14 MUTATED 2 3 8
ZNF14 WILD-TYPE 40 170 139
'ZNF14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.94

Table S6213.  Gene #595: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF14 MUTATED 4 2 3
ZNF14 WILD-TYPE 58 71 72
'ZNF14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S6214.  Gene #595: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF14 MUTATED 1 4 6
ZNF14 WILD-TYPE 69 116 94
'ZNF14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S6215.  Gene #595: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF14 MUTATED 2 0 1 2 0 3 0 2 1
ZNF14 WILD-TYPE 39 26 29 27 39 66 20 12 21
'ZNF14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S6216.  Gene #595: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF14 MUTATED 1 4 5 3
ZNF14 WILD-TYPE 99 68 67 118
'ZNF14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 0.15

Table S6217.  Gene #595: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF14 MUTATED 5 0 5 2 1
ZNF14 WILD-TYPE 54 75 69 117 37

Figure S1822.  Get High-res Image Gene #595: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S6218.  Gene #595: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF14 MUTATED 3 3 4 1 1
ZNF14 WILD-TYPE 48 73 57 70 94
'ZNF14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S6219.  Gene #595: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF14 MUTATED 5 2 2 0 1 2 0 0 0
ZNF14 WILD-TYPE 64 46 37 16 52 18 21 38 50
'ZNF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.55

Table S6220.  Gene #595: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF14 MUTATED 0 0 1 1 1 2
ZNF14 WILD-TYPE 13 16 13 10 10 7
'ZNF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S6221.  Gene #595: 'ZNF14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF14 MUTATED 2 0 0 0 1 0 1 1 0
ZNF14 WILD-TYPE 9 7 7 9 7 7 10 8 5
'CYP4A22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.77

Table S6222.  Gene #596: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CYP4A22 MUTATED 2 4 7
CYP4A22 WILD-TYPE 40 169 140
'CYP4A22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S6223.  Gene #596: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CYP4A22 MUTATED 4 4 3
CYP4A22 WILD-TYPE 58 69 72
'CYP4A22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S6224.  Gene #596: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CYP4A22 MUTATED 0 6 4
CYP4A22 WILD-TYPE 70 114 96
'CYP4A22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S6225.  Gene #596: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CYP4A22 MUTATED 2 2 0 2 0 2 0 0 2
CYP4A22 WILD-TYPE 39 24 30 27 39 67 20 14 20
'CYP4A22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.73

Table S6226.  Gene #596: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CYP4A22 MUTATED 5 2 4 2
CYP4A22 WILD-TYPE 95 70 68 119
'CYP4A22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.54

Table S6227.  Gene #596: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CYP4A22 MUTATED 3 4 4 1 1
CYP4A22 WILD-TYPE 56 71 70 118 37
'CYP4A22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.62

Table S6228.  Gene #596: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CYP4A22 MUTATED 3 2 4 3 1
CYP4A22 WILD-TYPE 48 74 57 68 94
'CYP4A22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S6229.  Gene #596: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CYP4A22 MUTATED 2 3 3 1 1 1 1 1 0
CYP4A22 WILD-TYPE 67 45 36 15 52 19 20 37 50
'CYP4A22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S6230.  Gene #596: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CYP4A22 MUTATED 1 1 0 1 1 1
CYP4A22 WILD-TYPE 12 15 14 10 10 8
'CYP4A22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0702 (Fisher's exact test), Q value = 0.29

Table S6231.  Gene #596: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CYP4A22 MUTATED 0 0 0 1 0 1 0 3 0
CYP4A22 WILD-TYPE 11 7 7 8 8 6 11 6 5
'AIFM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.62

Table S6232.  Gene #597: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AIFM1 MUTATED 1 3 7
AIFM1 WILD-TYPE 41 170 140
'AIFM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S6233.  Gene #597: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AIFM1 MUTATED 3 2 5
AIFM1 WILD-TYPE 59 71 70
'AIFM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S6234.  Gene #597: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AIFM1 MUTATED 4 2 4
AIFM1 WILD-TYPE 66 118 96
'AIFM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S6235.  Gene #597: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AIFM1 MUTATED 2 0 0 2 1 4 0 0 1
AIFM1 WILD-TYPE 39 26 30 27 38 65 20 14 21
'AIFM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S6236.  Gene #597: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AIFM1 MUTATED 3 4 3 1
AIFM1 WILD-TYPE 97 68 69 120
'AIFM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00634 (Fisher's exact test), Q value = 0.075

Table S6237.  Gene #597: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AIFM1 MUTATED 3 1 6 0 1
AIFM1 WILD-TYPE 56 74 68 119 37

Figure S1823.  Get High-res Image Gene #597: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AIFM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.21

Table S6238.  Gene #597: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AIFM1 MUTATED 2 6 2 0 1
AIFM1 WILD-TYPE 49 70 59 71 94

Figure S1824.  Get High-res Image Gene #597: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'AIFM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 0.93

Table S6239.  Gene #597: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AIFM1 MUTATED 2 3 1 1 3 0 0 1 0
AIFM1 WILD-TYPE 67 45 38 15 50 20 21 37 50
'ST3GAL6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0977 (Fisher's exact test), Q value = 0.34

Table S6240.  Gene #598: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ST3GAL6 MUTATED 3 0 0 1 0
ST3GAL6 WILD-TYPE 29 18 46 26 23
'ST3GAL6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.094

Table S6241.  Gene #598: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ST3GAL6 MUTATED 4 0 0
ST3GAL6 WILD-TYPE 39 67 36

Figure S1825.  Get High-res Image Gene #598: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ST3GAL6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00212 (Fisher's exact test), Q value = 0.039

Table S6242.  Gene #598: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ST3GAL6 MUTATED 2 0 8
ST3GAL6 WILD-TYPE 40 173 139

Figure S1826.  Get High-res Image Gene #598: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ST3GAL6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S6243.  Gene #598: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ST3GAL6 MUTATED 1 1 4
ST3GAL6 WILD-TYPE 61 72 71
'ST3GAL6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S6244.  Gene #598: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ST3GAL6 MUTATED 0 3 5
ST3GAL6 WILD-TYPE 70 117 95
'ST3GAL6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S6245.  Gene #598: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ST3GAL6 MUTATED 1 0 0 2 2 3 0 0 0
ST3GAL6 WILD-TYPE 40 26 30 27 37 66 20 14 22
'ST3GAL6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.91

Table S6246.  Gene #598: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ST3GAL6 MUTATED 1 2 3 4
ST3GAL6 WILD-TYPE 99 70 69 117
'ST3GAL6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00298 (Fisher's exact test), Q value = 0.047

Table S6247.  Gene #598: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ST3GAL6 MUTATED 1 1 4 0 4
ST3GAL6 WILD-TYPE 58 74 70 119 34

Figure S1827.  Get High-res Image Gene #598: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ST3GAL6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S6248.  Gene #598: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ST3GAL6 MUTATED 1 3 2 0 2
ST3GAL6 WILD-TYPE 50 73 59 71 93
'ST3GAL6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0229 (Fisher's exact test), Q value = 0.16

Table S6249.  Gene #598: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ST3GAL6 MUTATED 0 3 0 2 1 0 0 2 0
ST3GAL6 WILD-TYPE 69 45 39 14 52 20 21 36 50

Figure S1828.  Get High-res Image Gene #598: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NOVA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.98

Table S6250.  Gene #599: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NOVA1 MUTATED 2 1 1 1 0
NOVA1 WILD-TYPE 30 17 45 26 23
'NOVA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S6251.  Gene #599: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NOVA1 MUTATED 2 3 0
NOVA1 WILD-TYPE 41 64 36
'NOVA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S6252.  Gene #599: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NOVA1 MUTATED 1 4 9
NOVA1 WILD-TYPE 41 169 138
'NOVA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S6253.  Gene #599: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NOVA1 MUTATED 1 4 6
NOVA1 WILD-TYPE 61 69 69
'NOVA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S6254.  Gene #599: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NOVA1 MUTATED 4 4 5
NOVA1 WILD-TYPE 66 116 95
'NOVA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S6255.  Gene #599: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NOVA1 MUTATED 4 0 1 2 2 3 1 0 0
NOVA1 WILD-TYPE 37 26 29 27 37 66 19 14 22
'NOVA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S6256.  Gene #599: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NOVA1 MUTATED 2 4 5 3
NOVA1 WILD-TYPE 98 68 67 118
'NOVA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0286 (Fisher's exact test), Q value = 0.18

Table S6257.  Gene #599: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NOVA1 MUTATED 2 0 7 3 2
NOVA1 WILD-TYPE 57 75 67 116 36

Figure S1829.  Get High-res Image Gene #599: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NOVA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S6258.  Gene #599: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NOVA1 MUTATED 1 6 2 1 4
NOVA1 WILD-TYPE 50 70 59 70 91
'NOVA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0201 (Fisher's exact test), Q value = 0.14

Table S6259.  Gene #599: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NOVA1 MUTATED 1 4 1 3 1 1 2 1 0
NOVA1 WILD-TYPE 68 44 38 13 52 19 19 37 50

Figure S1830.  Get High-res Image Gene #599: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NOVA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0805 (Fisher's exact test), Q value = 0.31

Table S6260.  Gene #599: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NOVA1 MUTATED 0 1 0 1 3 0
NOVA1 WILD-TYPE 13 15 14 10 8 9
'NOVA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S6261.  Gene #599: 'NOVA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NOVA1 MUTATED 0 0 1 1 0 1 2 0 0
NOVA1 WILD-TYPE 11 7 6 8 8 6 9 9 5
'CD244 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.098

Table S6262.  Gene #600: 'CD244 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CD244 MUTATED 0 0 0 3 0
CD244 WILD-TYPE 32 18 46 24 23

Figure S1831.  Get High-res Image Gene #600: 'CD244 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CD244 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S6263.  Gene #600: 'CD244 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CD244 MUTATED 2 1 0
CD244 WILD-TYPE 41 66 36
'CD244 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.72

Table S6264.  Gene #600: 'CD244 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CD244 MUTATED 0 2 5
CD244 WILD-TYPE 42 171 142
'CD244 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0701 (Fisher's exact test), Q value = 0.29

Table S6265.  Gene #600: 'CD244 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CD244 MUTATED 3 1 0
CD244 WILD-TYPE 59 72 75
'CD244 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S6266.  Gene #600: 'CD244 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CD244 MUTATED 0 4 3
CD244 WILD-TYPE 70 116 97
'CD244 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.98

Table S6267.  Gene #600: 'CD244 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CD244 MUTATED 0 1 1 0 1 3 0 1 0
CD244 WILD-TYPE 41 25 29 29 38 66 20 13 22
'CD244 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S6268.  Gene #600: 'CD244 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CD244 MUTATED 2 0 1 4
CD244 WILD-TYPE 98 72 71 117
'CD244 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S6269.  Gene #600: 'CD244 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CD244 MUTATED 2 1 0 2 2
CD244 WILD-TYPE 57 74 74 117 36
'CD244 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S6270.  Gene #600: 'CD244 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CD244 MUTATED 0 0 2 1 3
CD244 WILD-TYPE 51 76 59 70 92
'CD244 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S6271.  Gene #600: 'CD244 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CD244 MUTATED 1 1 1 0 0 1 0 1 1
CD244 WILD-TYPE 68 47 38 16 53 19 21 37 49
'CD244 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S6272.  Gene #600: 'CD244 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CD244 MUTATED 1 1 0 1 0 0
CD244 WILD-TYPE 12 15 14 10 11 9
'CD244 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S6273.  Gene #600: 'CD244 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CD244 MUTATED 0 1 0 1 0 0 1 0 0
CD244 WILD-TYPE 11 6 7 8 8 7 10 9 5
'ARHGEF3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S6274.  Gene #601: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ARHGEF3 MUTATED 2 0 0 1 0
ARHGEF3 WILD-TYPE 30 18 46 26 23
'ARHGEF3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S6275.  Gene #601: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ARHGEF3 MUTATED 2 1 0
ARHGEF3 WILD-TYPE 41 66 36
'ARHGEF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00322 (Fisher's exact test), Q value = 0.05

Table S6276.  Gene #601: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARHGEF3 MUTATED 0 1 10
ARHGEF3 WILD-TYPE 42 172 137

Figure S1832.  Get High-res Image Gene #601: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARHGEF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S6277.  Gene #601: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARHGEF3 MUTATED 4 1 3
ARHGEF3 WILD-TYPE 58 72 72
'ARHGEF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 0.18

Table S6278.  Gene #601: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARHGEF3 MUTATED 1 1 7
ARHGEF3 WILD-TYPE 69 119 93

Figure S1833.  Get High-res Image Gene #601: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ARHGEF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.62

Table S6279.  Gene #601: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARHGEF3 MUTATED 2 0 1 0 0 6 0 0 0
ARHGEF3 WILD-TYPE 39 26 29 29 39 63 20 14 22
'ARHGEF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S6280.  Gene #601: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARHGEF3 MUTATED 1 4 3 3
ARHGEF3 WILD-TYPE 99 68 69 118
'ARHGEF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0981 (Fisher's exact test), Q value = 0.34

Table S6281.  Gene #601: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARHGEF3 MUTATED 2 1 5 1 2
ARHGEF3 WILD-TYPE 57 74 69 118 36
'ARHGEF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S6282.  Gene #601: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARHGEF3 MUTATED 0 5 2 0 3
ARHGEF3 WILD-TYPE 51 71 59 71 92
'ARHGEF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S6283.  Gene #601: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARHGEF3 MUTATED 1 3 0 3 0 1 0 1 1
ARHGEF3 WILD-TYPE 68 45 39 13 53 19 21 37 49

Figure S1834.  Get High-res Image Gene #601: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARHGEF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S6284.  Gene #601: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ARHGEF3 MUTATED 0 1 0 0 2 0
ARHGEF3 WILD-TYPE 13 15 14 11 9 9
'ARHGEF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6285.  Gene #601: 'ARHGEF3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ARHGEF3 MUTATED 1 0 0 1 0 0 1 0 0
ARHGEF3 WILD-TYPE 10 7 7 8 8 7 10 9 5
'MRPL13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.91

Table S6286.  Gene #602: 'MRPL13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MRPL13 MUTATED 1 2 3
MRPL13 WILD-TYPE 41 171 144
'MRPL13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S6287.  Gene #602: 'MRPL13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MRPL13 MUTATED 3 1 1
MRPL13 WILD-TYPE 59 72 74
'MRPL13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S6288.  Gene #602: 'MRPL13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MRPL13 MUTATED 1 1 3
MRPL13 WILD-TYPE 69 119 97
'MRPL13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.62

Table S6289.  Gene #602: 'MRPL13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MRPL13 MUTATED 0 0 0 0 0 3 0 1 1
MRPL13 WILD-TYPE 41 26 30 29 39 66 20 13 21
'MRPL13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S6290.  Gene #602: 'MRPL13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MRPL13 MUTATED 2 1 2 1
MRPL13 WILD-TYPE 98 71 70 120
'MRPL13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S6291.  Gene #602: 'MRPL13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MRPL13 MUTATED 1 3 1 0 1
MRPL13 WILD-TYPE 58 72 73 119 37
'MRPL13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.91

Table S6292.  Gene #602: 'MRPL13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MRPL13 MUTATED 2 1 1 0 2
MRPL13 WILD-TYPE 49 75 60 71 93
'MRPL13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S6293.  Gene #602: 'MRPL13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MRPL13 MUTATED 0 2 1 0 1 0 0 1 1
MRPL13 WILD-TYPE 69 46 38 16 52 20 21 37 49
'STK36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00223 (Fisher's exact test), Q value = 0.04

Table S6294.  Gene #603: 'STK36 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STK36 MUTATED 2 1 11
STK36 WILD-TYPE 40 172 136

Figure S1835.  Get High-res Image Gene #603: 'STK36 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STK36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0075 (Fisher's exact test), Q value = 0.081

Table S6295.  Gene #603: 'STK36 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STK36 MUTATED 7 0 5
STK36 WILD-TYPE 55 73 70

Figure S1836.  Get High-res Image Gene #603: 'STK36 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'STK36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 0.21

Table S6296.  Gene #603: 'STK36 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STK36 MUTATED 4 1 7
STK36 WILD-TYPE 66 119 93

Figure S1837.  Get High-res Image Gene #603: 'STK36 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'STK36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S6297.  Gene #603: 'STK36 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STK36 MUTATED 3 0 1 0 1 4 1 2 0
STK36 WILD-TYPE 38 26 29 29 38 65 19 12 22
'STK36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00154 (Fisher's exact test), Q value = 0.032

Table S6298.  Gene #603: 'STK36 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STK36 MUTATED 0 6 6 2
STK36 WILD-TYPE 100 66 66 119

Figure S1838.  Get High-res Image Gene #603: 'STK36 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'STK36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00679 (Fisher's exact test), Q value = 0.077

Table S6299.  Gene #603: 'STK36 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STK36 MUTATED 4 2 6 0 2
STK36 WILD-TYPE 55 73 68 119 36

Figure S1839.  Get High-res Image Gene #603: 'STK36 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STK36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00369 (Fisher's exact test), Q value = 0.054

Table S6300.  Gene #603: 'STK36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STK36 MUTATED 0 8 3 0 2
STK36 WILD-TYPE 51 68 58 71 93

Figure S1840.  Get High-res Image Gene #603: 'STK36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'STK36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S6301.  Gene #603: 'STK36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STK36 MUTATED 2 5 0 2 2 0 0 1 1
STK36 WILD-TYPE 67 43 39 14 51 20 21 37 49
'STK36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S6302.  Gene #603: 'STK36 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
STK36 MUTATED 0 3 0 0 1 0
STK36 WILD-TYPE 13 13 14 11 10 9
'STK36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S6303.  Gene #603: 'STK36 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
STK36 MUTATED 1 1 0 0 0 0 2 0 0
STK36 WILD-TYPE 10 6 7 9 8 7 9 9 5
'IL13RA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6304.  Gene #604: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IL13RA2 MUTATED 1 7 6
IL13RA2 WILD-TYPE 41 166 141
'IL13RA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S6305.  Gene #604: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IL13RA2 MUTATED 3 5 4
IL13RA2 WILD-TYPE 59 68 71
'IL13RA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S6306.  Gene #604: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IL13RA2 MUTATED 0 7 4
IL13RA2 WILD-TYPE 70 113 96
'IL13RA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S6307.  Gene #604: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IL13RA2 MUTATED 0 2 2 1 1 2 1 0 2
IL13RA2 WILD-TYPE 41 24 28 28 38 67 19 14 20
'IL13RA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S6308.  Gene #604: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IL13RA2 MUTATED 7 2 2 3
IL13RA2 WILD-TYPE 93 70 70 118
'IL13RA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S6309.  Gene #604: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IL13RA2 MUTATED 2 7 2 2 1
IL13RA2 WILD-TYPE 57 68 72 117 37
'IL13RA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0685 (Fisher's exact test), Q value = 0.28

Table S6310.  Gene #604: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IL13RA2 MUTATED 3 6 2 0 2
IL13RA2 WILD-TYPE 48 70 59 71 93
'IL13RA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S6311.  Gene #604: 'IL13RA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IL13RA2 MUTATED 2 2 2 1 3 2 0 0 1
IL13RA2 WILD-TYPE 67 46 37 15 50 18 21 38 49
'FAM26E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.19

Table S6312.  Gene #605: 'FAM26E MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM26E MUTATED 0 0 5
FAM26E WILD-TYPE 42 173 142

Figure S1841.  Get High-res Image Gene #605: 'FAM26E MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM26E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S6313.  Gene #605: 'FAM26E MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM26E MUTATED 1 0 3
FAM26E WILD-TYPE 61 73 72
'FAM26E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S6314.  Gene #605: 'FAM26E MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM26E MUTATED 0 1 3
FAM26E WILD-TYPE 70 119 97
'FAM26E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S6315.  Gene #605: 'FAM26E MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM26E MUTATED 0 1 0 0 0 2 1 0 0
FAM26E WILD-TYPE 41 25 30 29 39 67 19 14 22
'FAM26E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.11

Table S6316.  Gene #605: 'FAM26E MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM26E MUTATED 0 4 0 1
FAM26E WILD-TYPE 100 68 72 120

Figure S1842.  Get High-res Image Gene #605: 'FAM26E MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FAM26E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00656 (Fisher's exact test), Q value = 0.076

Table S6317.  Gene #605: 'FAM26E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM26E MUTATED 0 0 4 0 1
FAM26E WILD-TYPE 59 75 70 119 37

Figure S1843.  Get High-res Image Gene #605: 'FAM26E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM26E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0466 (Fisher's exact test), Q value = 0.23

Table S6318.  Gene #605: 'FAM26E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM26E MUTATED 0 4 0 0 1
FAM26E WILD-TYPE 51 72 61 71 94

Figure S1844.  Get High-res Image Gene #605: 'FAM26E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FAM26E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00173 (Fisher's exact test), Q value = 0.035

Table S6319.  Gene #605: 'FAM26E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM26E MUTATED 1 0 0 3 0 0 0 1 0
FAM26E WILD-TYPE 68 48 39 13 53 20 21 37 50

Figure S1845.  Get High-res Image Gene #605: 'FAM26E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF182 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 0.34

Table S6320.  Gene #606: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF182 MUTATED 3 0 0 1 0
ZNF182 WILD-TYPE 29 18 46 26 23
'ZNF182 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S6321.  Gene #606: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF182 MUTATED 2 1 1
ZNF182 WILD-TYPE 41 66 35
'ZNF182 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.16

Table S6322.  Gene #606: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF182 MUTATED 1 2 10
ZNF182 WILD-TYPE 41 171 137

Figure S1846.  Get High-res Image Gene #606: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF182 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S6323.  Gene #606: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF182 MUTATED 4 1 4
ZNF182 WILD-TYPE 58 72 71
'ZNF182 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S6324.  Gene #606: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF182 MUTATED 1 3 6
ZNF182 WILD-TYPE 69 117 94
'ZNF182 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.61

Table S6325.  Gene #606: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF182 MUTATED 3 0 1 0 1 1 2 1 1
ZNF182 WILD-TYPE 38 26 29 29 38 68 18 13 21
'ZNF182 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.19

Table S6326.  Gene #606: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF182 MUTATED 0 4 5 4
ZNF182 WILD-TYPE 100 68 67 117

Figure S1847.  Get High-res Image Gene #606: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF182 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S6327.  Gene #606: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF182 MUTATED 5 0 4 2 2
ZNF182 WILD-TYPE 54 75 70 117 36

Figure S1848.  Get High-res Image Gene #606: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF182 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S6328.  Gene #606: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF182 MUTATED 1 4 4 1 3
ZNF182 WILD-TYPE 50 72 57 70 92
'ZNF182 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00857 (Fisher's exact test), Q value = 0.087

Table S6329.  Gene #606: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF182 MUTATED 0 3 1 3 2 2 0 2 0
ZNF182 WILD-TYPE 69 45 38 13 51 18 21 36 50

Figure S1849.  Get High-res Image Gene #606: 'ZNF182 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GNA11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S6330.  Gene #607: 'GNA11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GNA11 MUTATED 0 2 5
GNA11 WILD-TYPE 42 171 142
'GNA11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0802 (Fisher's exact test), Q value = 0.31

Table S6331.  Gene #607: 'GNA11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GNA11 MUTATED 4 0 2
GNA11 WILD-TYPE 58 73 73
'GNA11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S6332.  Gene #607: 'GNA11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GNA11 MUTATED 1 1 4
GNA11 WILD-TYPE 69 119 96
'GNA11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S6333.  Gene #607: 'GNA11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GNA11 MUTATED 0 1 0 0 0 2 2 1 0
GNA11 WILD-TYPE 41 25 30 29 39 67 18 13 22
'GNA11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0347 (Fisher's exact test), Q value = 0.2

Table S6334.  Gene #607: 'GNA11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GNA11 MUTATED 1 3 3 0
GNA11 WILD-TYPE 99 69 69 121

Figure S1850.  Get High-res Image Gene #607: 'GNA11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GNA11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.35

Table S6335.  Gene #607: 'GNA11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GNA11 MUTATED 2 2 3 0 0
GNA11 WILD-TYPE 57 73 71 119 38
'GNA11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.35

Table S6336.  Gene #607: 'GNA11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GNA11 MUTATED 0 4 2 0 1
GNA11 WILD-TYPE 51 72 59 71 94
'GNA11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S6337.  Gene #607: 'GNA11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GNA11 MUTATED 1 3 0 1 1 0 0 1 0
GNA11 WILD-TYPE 68 45 39 15 52 20 21 37 50
'GNA11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S6338.  Gene #607: 'GNA11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GNA11 MUTATED 0 1 1 1 0 0
GNA11 WILD-TYPE 13 15 13 10 11 9
'GNA11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.99

Table S6339.  Gene #607: 'GNA11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GNA11 MUTATED 0 1 0 0 1 0 1 0 0
GNA11 WILD-TYPE 11 6 7 9 7 7 10 9 5
'KDM2B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S6340.  Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KDM2B MUTATED 4 0 2 0 0
KDM2B WILD-TYPE 28 18 44 27 23
'KDM2B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0862 (Fisher's exact test), Q value = 0.32

Table S6341.  Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KDM2B MUTATED 4 2 0
KDM2B WILD-TYPE 39 65 36
'KDM2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S6342.  Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KDM2B MUTATED 2 4 13
KDM2B WILD-TYPE 40 169 134

Figure S1851.  Get High-res Image Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KDM2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0505 (Fisher's exact test), Q value = 0.24

Table S6343.  Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KDM2B MUTATED 2 3 10
KDM2B WILD-TYPE 60 70 65
'KDM2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S6344.  Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KDM2B MUTATED 1 6 8
KDM2B WILD-TYPE 69 114 92
'KDM2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S6345.  Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KDM2B MUTATED 1 0 1 3 3 5 2 0 0
KDM2B WILD-TYPE 40 26 29 26 36 64 18 14 22
'KDM2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 0.24

Table S6346.  Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KDM2B MUTATED 3 9 2 6
KDM2B WILD-TYPE 97 63 70 115
'KDM2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00252 (Fisher's exact test), Q value = 0.043

Table S6347.  Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KDM2B MUTATED 1 2 11 3 3
KDM2B WILD-TYPE 58 73 63 116 35

Figure S1852.  Get High-res Image Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KDM2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.018

Table S6348.  Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KDM2B MUTATED 1 11 1 0 7
KDM2B WILD-TYPE 50 65 60 71 88

Figure S1853.  Get High-res Image Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KDM2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.009

Table S6349.  Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KDM2B MUTATED 4 2 1 6 1 0 2 4 0
KDM2B WILD-TYPE 65 46 38 10 52 20 19 34 50

Figure S1854.  Get High-res Image Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KDM2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00657 (Fisher's exact test), Q value = 0.076

Table S6350.  Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KDM2B MUTATED 0 0 0 0 3 0
KDM2B WILD-TYPE 13 16 14 11 8 9

Figure S1855.  Get High-res Image Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KDM2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.42

Table S6351.  Gene #608: 'KDM2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KDM2B MUTATED 0 0 0 2 0 1 0 0 0
KDM2B WILD-TYPE 11 7 7 7 8 6 11 9 5
'C17ORF47 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S6352.  Gene #609: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C17ORF47 MUTATED 0 2 3
C17ORF47 WILD-TYPE 42 171 144
'C17ORF47 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S6353.  Gene #609: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C17ORF47 MUTATED 2 2 0
C17ORF47 WILD-TYPE 60 71 75
'C17ORF47 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6354.  Gene #609: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C17ORF47 MUTATED 1 2 2
C17ORF47 WILD-TYPE 69 118 98
'C17ORF47 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S6355.  Gene #609: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C17ORF47 MUTATED 2 0 1 1 0 1 0 0 0
C17ORF47 WILD-TYPE 39 26 29 28 39 68 20 14 22
'C17ORF47 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S6356.  Gene #609: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C17ORF47 MUTATED 2 1 1 1
C17ORF47 WILD-TYPE 98 71 71 120
'C17ORF47 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.95

Table S6357.  Gene #609: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C17ORF47 MUTATED 2 1 1 1 0
C17ORF47 WILD-TYPE 57 74 73 118 38
'C17ORF47 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S6358.  Gene #609: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C17ORF47 MUTATED 2 0 2 0 1
C17ORF47 WILD-TYPE 49 76 59 71 94
'C17ORF47 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S6359.  Gene #609: 'C17ORF47 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C17ORF47 MUTATED 0 2 0 0 2 1 0 0 0
C17ORF47 WILD-TYPE 69 46 39 16 51 19 21 38 50
'KCTD16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.99

Table S6360.  Gene #610: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KCTD16 MUTATED 2 6 4
KCTD16 WILD-TYPE 40 167 143
'KCTD16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S6361.  Gene #610: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KCTD16 MUTATED 4 3 3
KCTD16 WILD-TYPE 58 70 72
'KCTD16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S6362.  Gene #610: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KCTD16 MUTATED 0 6 3
KCTD16 WILD-TYPE 70 114 97
'KCTD16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0742 (Fisher's exact test), Q value = 0.3

Table S6363.  Gene #610: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KCTD16 MUTATED 0 0 0 4 1 3 0 1 0
KCTD16 WILD-TYPE 41 26 30 25 38 66 20 13 22
'KCTD16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S6364.  Gene #610: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KCTD16 MUTATED 5 2 3 2
KCTD16 WILD-TYPE 95 70 69 119
'KCTD16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S6365.  Gene #610: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KCTD16 MUTATED 2 4 4 1 1
KCTD16 WILD-TYPE 57 71 70 118 37
'KCTD16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S6366.  Gene #610: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KCTD16 MUTATED 1 4 3 2 2
KCTD16 WILD-TYPE 50 72 58 69 93
'KCTD16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S6367.  Gene #610: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KCTD16 MUTATED 4 1 1 1 2 1 0 1 1
KCTD16 WILD-TYPE 65 47 38 15 51 19 21 37 49
'KCTD16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S6368.  Gene #610: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KCTD16 MUTATED 2 0 2 1 1 0
KCTD16 WILD-TYPE 11 16 12 10 10 9
'KCTD16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 0.98

Table S6369.  Gene #610: 'KCTD16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KCTD16 MUTATED 1 0 0 2 1 0 2 0 0
KCTD16 WILD-TYPE 10 7 7 7 7 7 9 9 5
'LNPEP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0074 (Fisher's exact test), Q value = 0.081

Table S6370.  Gene #611: 'LNPEP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LNPEP MUTATED 5 0 0 1 0
LNPEP WILD-TYPE 27 18 46 26 23

Figure S1856.  Get High-res Image Gene #611: 'LNPEP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LNPEP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S6371.  Gene #611: 'LNPEP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LNPEP MUTATED 4 1 1
LNPEP WILD-TYPE 39 66 35
'LNPEP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00167 (Fisher's exact test), Q value = 0.034

Table S6372.  Gene #611: 'LNPEP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LNPEP MUTATED 2 2 14
LNPEP WILD-TYPE 40 171 133

Figure S1857.  Get High-res Image Gene #611: 'LNPEP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LNPEP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.76

Table S6373.  Gene #611: 'LNPEP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LNPEP MUTATED 4 2 6
LNPEP WILD-TYPE 58 71 69
'LNPEP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6374.  Gene #611: 'LNPEP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LNPEP MUTATED 4 6 5
LNPEP WILD-TYPE 66 114 95
'LNPEP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S6375.  Gene #611: 'LNPEP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LNPEP MUTATED 2 1 1 1 3 4 1 2 0
LNPEP WILD-TYPE 39 25 29 28 36 65 19 12 22
'LNPEP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.058 (Fisher's exact test), Q value = 0.26

Table S6376.  Gene #611: 'LNPEP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LNPEP MUTATED 2 8 2 6
LNPEP WILD-TYPE 98 64 70 115
'LNPEP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.5

Table S6377.  Gene #611: 'LNPEP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LNPEP MUTATED 2 3 7 3 3
LNPEP WILD-TYPE 57 72 67 116 35
'LNPEP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.77

Table S6378.  Gene #611: 'LNPEP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LNPEP MUTATED 2 6 1 2 6
LNPEP WILD-TYPE 49 70 60 69 89
'LNPEP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 0.23

Table S6379.  Gene #611: 'LNPEP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LNPEP MUTATED 3 3 0 3 1 2 0 4 1
LNPEP WILD-TYPE 66 45 39 13 52 18 21 34 49

Figure S1858.  Get High-res Image Gene #611: 'LNPEP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LNPEP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S6380.  Gene #611: 'LNPEP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LNPEP MUTATED 0 0 0 1 3 0
LNPEP WILD-TYPE 13 16 14 10 8 9

Figure S1859.  Get High-res Image Gene #611: 'LNPEP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'LNPEP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.53

Table S6381.  Gene #611: 'LNPEP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LNPEP MUTATED 0 0 0 2 0 0 2 0 0
LNPEP WILD-TYPE 11 7 7 7 8 7 9 9 5
'RHPN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S6382.  Gene #612: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RHPN2 MUTATED 2 0 0 2 0
RHPN2 WILD-TYPE 30 18 46 25 23
'RHPN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S6383.  Gene #612: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RHPN2 MUTATED 2 2 0
RHPN2 WILD-TYPE 41 65 36
'RHPN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.55

Table S6384.  Gene #612: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RHPN2 MUTATED 0 6 9
RHPN2 WILD-TYPE 42 167 138
'RHPN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S6385.  Gene #612: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RHPN2 MUTATED 3 5 3
RHPN2 WILD-TYPE 59 68 72
'RHPN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S6386.  Gene #612: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RHPN2 MUTATED 2 7 4
RHPN2 WILD-TYPE 68 113 96
'RHPN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.91

Table S6387.  Gene #612: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RHPN2 MUTATED 2 1 3 1 0 5 1 0 0
RHPN2 WILD-TYPE 39 25 27 28 39 64 19 14 22
'RHPN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S6388.  Gene #612: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RHPN2 MUTATED 5 4 2 4
RHPN2 WILD-TYPE 95 68 70 117
'RHPN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0986 (Fisher's exact test), Q value = 0.34

Table S6389.  Gene #612: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RHPN2 MUTATED 1 7 3 2 2
RHPN2 WILD-TYPE 58 68 71 117 36
'RHPN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0422 (Fisher's exact test), Q value = 0.22

Table S6390.  Gene #612: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RHPN2 MUTATED 3 7 1 0 4
RHPN2 WILD-TYPE 48 69 60 71 91

Figure S1860.  Get High-res Image Gene #612: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RHPN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0695 (Fisher's exact test), Q value = 0.28

Table S6391.  Gene #612: 'RHPN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RHPN2 MUTATED 5 2 2 1 0 3 1 1 0
RHPN2 WILD-TYPE 64 46 37 15 53 17 20 37 50
'FRS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.94

Table S6392.  Gene #613: 'FRS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FRS3 MUTATED 1 3 5
FRS3 WILD-TYPE 41 170 142
'FRS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S6393.  Gene #613: 'FRS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FRS3 MUTATED 4 1 3
FRS3 WILD-TYPE 58 72 72
'FRS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.99

Table S6394.  Gene #613: 'FRS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FRS3 MUTATED 1 4 4
FRS3 WILD-TYPE 69 116 96
'FRS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S6395.  Gene #613: 'FRS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FRS3 MUTATED 1 0 2 1 0 3 2 0 0
FRS3 WILD-TYPE 40 26 28 28 39 66 18 14 22
'FRS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S6396.  Gene #613: 'FRS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FRS3 MUTATED 3 3 3 1
FRS3 WILD-TYPE 97 69 69 120
'FRS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0772 (Fisher's exact test), Q value = 0.3

Table S6397.  Gene #613: 'FRS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FRS3 MUTATED 3 3 3 0 1
FRS3 WILD-TYPE 56 72 71 119 37
'FRS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S6398.  Gene #613: 'FRS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FRS3 MUTATED 0 3 2 2 3
FRS3 WILD-TYPE 51 73 59 69 92
'FRS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 0.98

Table S6399.  Gene #613: 'FRS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FRS3 MUTATED 2 3 0 1 1 1 0 1 1
FRS3 WILD-TYPE 67 45 39 15 52 19 21 37 49
'FRS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S6400.  Gene #613: 'FRS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FRS3 MUTATED 1 0 0 0 1 1
FRS3 WILD-TYPE 12 16 14 11 10 8
'FRS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S6401.  Gene #613: 'FRS3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FRS3 MUTATED 0 0 0 1 0 0 0 2 0
FRS3 WILD-TYPE 11 7 7 8 8 7 11 7 5
'POLE MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.015

Table S6402.  Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
POLE MUTATED 9 0 1 3 0
POLE WILD-TYPE 23 18 45 24 23

Figure S1861.  Get High-res Image Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'POLE MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00047 (Fisher's exact test), Q value = 0.015

Table S6403.  Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
POLE MUTATED 10 1 2
POLE WILD-TYPE 33 66 34

Figure S1862.  Get High-res Image Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'POLE MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S6404.  Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
POLE MUTATED 2 4 24
POLE WILD-TYPE 40 169 123

Figure S1863.  Get High-res Image Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'POLE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.62

Table S6405.  Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
POLE MUTATED 8 4 6
POLE WILD-TYPE 54 69 69
'POLE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S6406.  Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
POLE MUTATED 3 8 12
POLE WILD-TYPE 67 112 88
'POLE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S6407.  Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
POLE MUTATED 3 1 1 3 3 8 2 1 1
POLE WILD-TYPE 38 25 29 26 36 61 18 13 21
'POLE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.55

Table S6408.  Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
POLE MUTATED 4 8 6 13
POLE WILD-TYPE 96 64 66 108
'POLE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00044 (Fisher's exact test), Q value = 0.015

Table S6409.  Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
POLE MUTATED 3 4 10 4 10
POLE WILD-TYPE 56 71 64 115 28

Figure S1864.  Get High-res Image Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'POLE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S6410.  Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
POLE MUTATED 2 9 5 3 11
POLE WILD-TYPE 49 67 56 68 84
'POLE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S6411.  Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
POLE MUTATED 5 5 2 2 2 4 1 7 2
POLE WILD-TYPE 64 43 37 14 51 16 20 31 48
'POLE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S6412.  Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
POLE MUTATED 0 0 2 2 4 0
POLE WILD-TYPE 13 16 12 9 7 9

Figure S1865.  Get High-res Image Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'POLE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S6413.  Gene #614: 'POLE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
POLE MUTATED 0 0 1 1 2 1 3 0 0
POLE WILD-TYPE 11 7 6 8 6 6 8 9 5
'NIPA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.55

Table S6414.  Gene #615: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NIPA2 MUTATED 3 0 1 0 0
NIPA2 WILD-TYPE 29 18 45 27 23
'NIPA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S6415.  Gene #615: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NIPA2 MUTATED 3 1 0
NIPA2 WILD-TYPE 40 66 36
'NIPA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 0.31

Table S6416.  Gene #615: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NIPA2 MUTATED 0 1 6
NIPA2 WILD-TYPE 42 172 141
'NIPA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S6417.  Gene #615: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NIPA2 MUTATED 0 0 3
NIPA2 WILD-TYPE 62 73 72
'NIPA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.98

Table S6418.  Gene #615: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NIPA2 MUTATED 0 2 2
NIPA2 WILD-TYPE 70 118 98
'NIPA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.9

Table S6419.  Gene #615: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NIPA2 MUTATED 0 1 0 0 2 1 0 0 0
NIPA2 WILD-TYPE 41 25 30 29 37 68 20 14 22
'NIPA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0544 (Fisher's exact test), Q value = 0.25

Table S6420.  Gene #615: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NIPA2 MUTATED 0 3 0 4
NIPA2 WILD-TYPE 100 69 72 117
'NIPA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0493 (Fisher's exact test), Q value = 0.24

Table S6421.  Gene #615: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NIPA2 MUTATED 0 0 2 2 3
NIPA2 WILD-TYPE 59 75 72 117 35

Figure S1866.  Get High-res Image Gene #615: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NIPA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0668 (Fisher's exact test), Q value = 0.28

Table S6422.  Gene #615: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NIPA2 MUTATED 0 2 0 0 5
NIPA2 WILD-TYPE 51 74 61 71 90
'NIPA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00097 (Fisher's exact test), Q value = 0.024

Table S6423.  Gene #615: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NIPA2 MUTATED 0 0 0 2 0 0 0 4 1
NIPA2 WILD-TYPE 69 48 39 14 53 20 21 34 49

Figure S1867.  Get High-res Image Gene #615: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDH10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00345 (Fisher's exact test), Q value = 0.052

Table S6424.  Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CDH10 MUTATED 7 0 1 4 0
CDH10 WILD-TYPE 25 18 45 23 23

Figure S1868.  Get High-res Image Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDH10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00136 (Fisher's exact test), Q value = 0.03

Table S6425.  Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CDH10 MUTATED 9 3 0
CDH10 WILD-TYPE 34 64 36

Figure S1869.  Get High-res Image Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDH10 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.016

Table S6426.  Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CDH10 MUTATED 2 9 27
CDH10 WILD-TYPE 40 164 120

Figure S1870.  Get High-res Image Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDH10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S6427.  Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CDH10 MUTATED 10 6 10
CDH10 WILD-TYPE 52 67 65
'CDH10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S6428.  Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CDH10 MUTATED 4 15 16
CDH10 WILD-TYPE 66 105 84
'CDH10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.62

Table S6429.  Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CDH10 MUTATED 1 4 4 4 3 10 5 2 2
CDH10 WILD-TYPE 40 22 26 25 36 59 15 12 20
'CDH10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.53

Table S6430.  Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CDH10 MUTATED 8 12 9 10
CDH10 WILD-TYPE 92 60 63 111
'CDH10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00069 (Fisher's exact test), Q value = 0.02

Table S6431.  Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CDH10 MUTATED 5 7 15 4 8
CDH10 WILD-TYPE 54 68 59 115 30

Figure S1871.  Get High-res Image Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDH10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00606 (Fisher's exact test), Q value = 0.073

Table S6432.  Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CDH10 MUTATED 3 17 3 4 10
CDH10 WILD-TYPE 48 59 58 67 85

Figure S1872.  Get High-res Image Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CDH10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.19

Table S6433.  Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CDH10 MUTATED 8 8 2 4 3 3 1 7 1
CDH10 WILD-TYPE 61 40 37 12 50 17 20 31 49

Figure S1873.  Get High-res Image Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S6434.  Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CDH10 MUTATED 2 1 4 1 3 0
CDH10 WILD-TYPE 11 15 10 10 8 9
'CDH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 0.96

Table S6435.  Gene #616: 'CDH10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CDH10 MUTATED 1 0 1 1 2 1 4 1 0
CDH10 WILD-TYPE 10 7 6 8 6 6 7 8 5
'CATSPER1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.28

Table S6436.  Gene #617: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CATSPER1 MUTATED 4 0 1 0 0
CATSPER1 WILD-TYPE 28 18 45 27 23
'CATSPER1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S6437.  Gene #617: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CATSPER1 MUTATED 3 1 1
CATSPER1 WILD-TYPE 40 66 35
'CATSPER1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.94

Table S6438.  Gene #617: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CATSPER1 MUTATED 1 6 8
CATSPER1 WILD-TYPE 41 167 139
'CATSPER1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.55

Table S6439.  Gene #617: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CATSPER1 MUTATED 1 6 4
CATSPER1 WILD-TYPE 61 67 71
'CATSPER1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S6440.  Gene #617: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CATSPER1 MUTATED 1 6 6
CATSPER1 WILD-TYPE 69 114 94
'CATSPER1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S6441.  Gene #617: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CATSPER1 MUTATED 2 0 1 2 3 3 1 0 1
CATSPER1 WILD-TYPE 39 26 29 27 36 66 19 14 21
'CATSPER1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0506 (Fisher's exact test), Q value = 0.24

Table S6442.  Gene #617: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CATSPER1 MUTATED 8 4 0 4
CATSPER1 WILD-TYPE 92 68 72 117
'CATSPER1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S6443.  Gene #617: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CATSPER1 MUTATED 3 5 3 2 3
CATSPER1 WILD-TYPE 56 70 71 117 35
'CATSPER1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.99 (Fisher's exact test), Q value = 1

Table S6444.  Gene #617: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CATSPER1 MUTATED 2 3 3 4 4
CATSPER1 WILD-TYPE 49 73 58 67 91
'CATSPER1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S6445.  Gene #617: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CATSPER1 MUTATED 2 3 1 1 5 1 0 3 0
CATSPER1 WILD-TYPE 67 45 38 15 48 19 21 35 50
'CATSPER1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6446.  Gene #617: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CATSPER1 MUTATED 1 1 1 0 0 0
CATSPER1 WILD-TYPE 12 15 13 11 11 9
'CATSPER1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S6447.  Gene #617: 'CATSPER1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CATSPER1 MUTATED 1 0 0 1 0 0 0 0 1
CATSPER1 WILD-TYPE 10 7 7 8 8 7 11 9 4
'FOXN3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S6448.  Gene #618: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FOXN3 MUTATED 2 0 0 1 0
FOXN3 WILD-TYPE 30 18 46 26 23
'FOXN3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0385 (Fisher's exact test), Q value = 0.21

Table S6449.  Gene #618: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FOXN3 MUTATED 3 0 0
FOXN3 WILD-TYPE 40 67 36

Figure S1874.  Get High-res Image Gene #618: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FOXN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.1

Table S6450.  Gene #618: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FOXN3 MUTATED 1 1 9
FOXN3 WILD-TYPE 41 172 138

Figure S1875.  Get High-res Image Gene #618: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FOXN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.77

Table S6451.  Gene #618: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FOXN3 MUTATED 3 1 4
FOXN3 WILD-TYPE 59 72 71
'FOXN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S6452.  Gene #618: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FOXN3 MUTATED 1 2 6
FOXN3 WILD-TYPE 69 118 94
'FOXN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S6453.  Gene #618: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FOXN3 MUTATED 2 0 0 1 3 3 0 0 0
FOXN3 WILD-TYPE 39 26 30 28 36 66 20 14 22
'FOXN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S6454.  Gene #618: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FOXN3 MUTATED 1 4 3 3
FOXN3 WILD-TYPE 99 68 69 118
'FOXN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00669 (Fisher's exact test), Q value = 0.077

Table S6455.  Gene #618: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FOXN3 MUTATED 2 1 5 0 3
FOXN3 WILD-TYPE 57 74 69 119 35

Figure S1876.  Get High-res Image Gene #618: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FOXN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.74

Table S6456.  Gene #618: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FOXN3 MUTATED 2 5 1 1 2
FOXN3 WILD-TYPE 49 71 60 70 93
'FOXN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0262 (Fisher's exact test), Q value = 0.17

Table S6457.  Gene #618: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FOXN3 MUTATED 2 2 0 3 1 0 0 3 0
FOXN3 WILD-TYPE 67 46 39 13 52 20 21 35 50

Figure S1877.  Get High-res Image Gene #618: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'REXO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.19

Table S6458.  Gene #619: 'REXO4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
REXO4 MUTATED 0 0 5
REXO4 WILD-TYPE 42 173 142

Figure S1878.  Get High-res Image Gene #619: 'REXO4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'REXO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S6459.  Gene #619: 'REXO4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
REXO4 MUTATED 0 0 3
REXO4 WILD-TYPE 62 73 72
'REXO4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.57

Table S6460.  Gene #619: 'REXO4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
REXO4 MUTATED 2 3 0
REXO4 WILD-TYPE 68 117 100
'REXO4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.78

Table S6461.  Gene #619: 'REXO4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
REXO4 MUTATED 1 1 0 1 1 0 1 0 0
REXO4 WILD-TYPE 40 25 30 28 38 69 19 14 22
'REXO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S6462.  Gene #619: 'REXO4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
REXO4 MUTATED 0 2 1 2
REXO4 WILD-TYPE 100 70 71 119
'REXO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0461 (Fisher's exact test), Q value = 0.23

Table S6463.  Gene #619: 'REXO4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
REXO4 MUTATED 0 1 2 0 2
REXO4 WILD-TYPE 59 74 72 119 36

Figure S1879.  Get High-res Image Gene #619: 'REXO4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'REXO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.89

Table S6464.  Gene #619: 'REXO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
REXO4 MUTATED 1 2 0 0 2
REXO4 WILD-TYPE 50 74 61 71 93
'REXO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.56

Table S6465.  Gene #619: 'REXO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
REXO4 MUTATED 1 1 0 1 0 0 0 2 0
REXO4 WILD-TYPE 68 47 39 15 53 20 21 36 50
'OTX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S6466.  Gene #620: 'OTX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OTX2 MUTATED 0 1 5
OTX2 WILD-TYPE 42 172 142
'OTX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S6467.  Gene #620: 'OTX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OTX2 MUTATED 0 1 4
OTX2 WILD-TYPE 62 72 71
'OTX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6468.  Gene #620: 'OTX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OTX2 MUTATED 1 2 2
OTX2 WILD-TYPE 69 118 98
'OTX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S6469.  Gene #620: 'OTX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OTX2 MUTATED 0 1 0 0 2 2 0 0 0
OTX2 WILD-TYPE 41 25 30 29 37 67 20 14 22
'OTX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0521 (Fisher's exact test), Q value = 0.24

Table S6470.  Gene #620: 'OTX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OTX2 MUTATED 1 4 0 1
OTX2 WILD-TYPE 99 68 72 120
'OTX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S6471.  Gene #620: 'OTX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OTX2 MUTATED 0 2 3 1 0
OTX2 WILD-TYPE 59 73 71 118 38
'OTX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S6472.  Gene #620: 'OTX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OTX2 MUTATED 0 4 0 1 1
OTX2 WILD-TYPE 51 72 61 70 94
'OTX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0887 (Fisher's exact test), Q value = 0.32

Table S6473.  Gene #620: 'OTX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OTX2 MUTATED 1 0 0 2 2 0 0 1 0
OTX2 WILD-TYPE 68 48 39 14 51 20 21 37 50
'NGEF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S6474.  Gene #621: 'NGEF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NGEF MUTATED 0 10 6
NGEF WILD-TYPE 42 163 141
'NGEF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S6475.  Gene #621: 'NGEF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NGEF MUTATED 3 7 5
NGEF WILD-TYPE 59 66 70
'NGEF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.2

Table S6476.  Gene #621: 'NGEF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NGEF MUTATED 0 6 8
NGEF WILD-TYPE 70 114 92

Figure S1880.  Get High-res Image Gene #621: 'NGEF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NGEF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S6477.  Gene #621: 'NGEF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NGEF MUTATED 1 2 0 2 1 5 1 1 1
NGEF WILD-TYPE 40 24 30 27 38 64 19 13 21
'NGEF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0633 (Fisher's exact test), Q value = 0.27

Table S6478.  Gene #621: 'NGEF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NGEF MUTATED 7 4 4 1
NGEF WILD-TYPE 93 68 68 120
'NGEF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S6479.  Gene #621: 'NGEF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NGEF MUTATED 4 7 4 1 0
NGEF WILD-TYPE 55 68 70 118 38

Figure S1881.  Get High-res Image Gene #621: 'NGEF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NGEF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0197 (Fisher's exact test), Q value = 0.14

Table S6480.  Gene #621: 'NGEF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NGEF MUTATED 6 6 1 1 2
NGEF WILD-TYPE 45 70 60 70 93

Figure S1882.  Get High-res Image Gene #621: 'NGEF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NGEF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S6481.  Gene #621: 'NGEF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NGEF MUTATED 3 4 0 2 1 4 0 0 2
NGEF WILD-TYPE 66 44 39 14 52 16 21 38 48

Figure S1883.  Get High-res Image Gene #621: 'NGEF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NGEF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S6482.  Gene #621: 'NGEF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NGEF MUTATED 1 0 1 1 1 0
NGEF WILD-TYPE 12 16 13 10 10 9
'NGEF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S6483.  Gene #621: 'NGEF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NGEF MUTATED 0 0 0 2 1 0 1 0 0
NGEF WILD-TYPE 11 7 7 7 7 7 10 9 5
'GGT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0456 (Fisher's exact test), Q value = 0.23

Table S6484.  Gene #622: 'GGT5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GGT5 MUTATED 1 3 10
GGT5 WILD-TYPE 41 170 137

Figure S1884.  Get High-res Image Gene #622: 'GGT5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GGT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0858 (Fisher's exact test), Q value = 0.32

Table S6485.  Gene #622: 'GGT5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GGT5 MUTATED 6 1 5
GGT5 WILD-TYPE 56 72 70
'GGT5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S6486.  Gene #622: 'GGT5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GGT5 MUTATED 1 6 6
GGT5 WILD-TYPE 69 114 94
'GGT5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S6487.  Gene #622: 'GGT5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GGT5 MUTATED 1 1 3 2 1 4 1 0 0
GGT5 WILD-TYPE 40 25 27 27 38 65 19 14 22
'GGT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S6488.  Gene #622: 'GGT5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GGT5 MUTATED 1 7 4 2
GGT5 WILD-TYPE 99 65 68 119

Figure S1885.  Get High-res Image Gene #622: 'GGT5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GGT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00633 (Fisher's exact test), Q value = 0.074

Table S6489.  Gene #622: 'GGT5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GGT5 MUTATED 2 3 7 0 2
GGT5 WILD-TYPE 57 72 67 119 36

Figure S1886.  Get High-res Image Gene #622: 'GGT5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GGT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.098

Table S6490.  Gene #622: 'GGT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GGT5 MUTATED 1 8 2 0 2
GGT5 WILD-TYPE 50 68 59 71 93

Figure S1887.  Get High-res Image Gene #622: 'GGT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GGT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0707 (Fisher's exact test), Q value = 0.29

Table S6491.  Gene #622: 'GGT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GGT5 MUTATED 2 4 0 3 1 1 0 1 1
GGT5 WILD-TYPE 67 44 39 13 52 19 21 37 49
'GGT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.17

Table S6492.  Gene #622: 'GGT5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GGT5 MUTATED 0 0 1 0 3 0
GGT5 WILD-TYPE 13 16 13 11 8 9

Figure S1888.  Get High-res Image Gene #622: 'GGT5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GGT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S6493.  Gene #622: 'GGT5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GGT5 MUTATED 0 0 0 2 1 0 1 0 0
GGT5 WILD-TYPE 11 7 7 7 7 7 10 9 5
'CXORF38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S6494.  Gene #623: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CXORF38 MUTATED 0 1 4
CXORF38 WILD-TYPE 42 172 143
'CXORF38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S6495.  Gene #623: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CXORF38 MUTATED 3 0 2
CXORF38 WILD-TYPE 59 73 73
'CXORF38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S6496.  Gene #623: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CXORF38 MUTATED 0 2 3
CXORF38 WILD-TYPE 70 118 97
'CXORF38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0973 (Fisher's exact test), Q value = 0.34

Table S6497.  Gene #623: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CXORF38 MUTATED 0 0 0 0 0 2 2 1 0
CXORF38 WILD-TYPE 41 26 30 29 39 67 18 13 22
'CXORF38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00321 (Fisher's exact test), Q value = 0.05

Table S6498.  Gene #623: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CXORF38 MUTATED 0 4 1 0
CXORF38 WILD-TYPE 100 68 71 121

Figure S1889.  Get High-res Image Gene #623: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CXORF38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S6499.  Gene #623: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CXORF38 MUTATED 1 1 3 0 0
CXORF38 WILD-TYPE 58 74 71 119 38
'CXORF38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0461 (Fisher's exact test), Q value = 0.23

Table S6500.  Gene #623: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CXORF38 MUTATED 0 4 0 0 1
CXORF38 WILD-TYPE 51 72 61 71 94

Figure S1890.  Get High-res Image Gene #623: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CXORF38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.076 (Fisher's exact test), Q value = 0.3

Table S6501.  Gene #623: 'CXORF38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CXORF38 MUTATED 0 1 0 2 1 0 0 0 1
CXORF38 WILD-TYPE 69 47 39 14 52 20 21 38 49
'BST2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.1

Table S6502.  Gene #624: 'BST2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BST2 MUTATED 0 0 6
BST2 WILD-TYPE 42 173 141

Figure S1891.  Get High-res Image Gene #624: 'BST2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BST2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S6503.  Gene #624: 'BST2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BST2 MUTATED 3 0 2
BST2 WILD-TYPE 59 73 73
'BST2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S6504.  Gene #624: 'BST2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BST2 MUTATED 1 1 4
BST2 WILD-TYPE 69 119 96
'BST2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S6505.  Gene #624: 'BST2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BST2 MUTATED 0 0 0 1 0 4 0 1 0
BST2 WILD-TYPE 41 26 30 28 39 65 20 13 22
'BST2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 0.33

Table S6506.  Gene #624: 'BST2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BST2 MUTATED 0 3 2 1
BST2 WILD-TYPE 100 69 70 120
'BST2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0728 (Fisher's exact test), Q value = 0.29

Table S6507.  Gene #624: 'BST2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BST2 MUTATED 0 2 3 0 1
BST2 WILD-TYPE 59 73 71 119 37
'BST2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00537 (Fisher's exact test), Q value = 0.069

Table S6508.  Gene #624: 'BST2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BST2 MUTATED 0 5 1 0 0
BST2 WILD-TYPE 51 71 60 71 95

Figure S1892.  Get High-res Image Gene #624: 'BST2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BST2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S6509.  Gene #624: 'BST2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BST2 MUTATED 2 2 0 1 0 0 1 0 0
BST2 WILD-TYPE 67 46 39 15 53 20 20 38 50
'SFRS15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.11

Table S6510.  Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SFRS15 MUTATED 6 0 1 1 0
SFRS15 WILD-TYPE 26 18 45 26 23

Figure S1893.  Get High-res Image Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SFRS15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S6511.  Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SFRS15 MUTATED 5 2 1
SFRS15 WILD-TYPE 38 65 35
'SFRS15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00081 (Fisher's exact test), Q value = 0.022

Table S6512.  Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SFRS15 MUTATED 2 2 15
SFRS15 WILD-TYPE 40 171 132

Figure S1894.  Get High-res Image Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SFRS15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00704 (Fisher's exact test), Q value = 0.079

Table S6513.  Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SFRS15 MUTATED 7 0 5
SFRS15 WILD-TYPE 55 73 70

Figure S1895.  Get High-res Image Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SFRS15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 0.22

Table S6514.  Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SFRS15 MUTATED 0 9 5
SFRS15 WILD-TYPE 70 111 95

Figure S1896.  Get High-res Image Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SFRS15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S6515.  Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SFRS15 MUTATED 1 2 1 3 2 3 0 1 1
SFRS15 WILD-TYPE 40 24 29 26 37 66 20 13 21
'SFRS15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0977 (Fisher's exact test), Q value = 0.34

Table S6516.  Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SFRS15 MUTATED 1 5 4 9
SFRS15 WILD-TYPE 99 67 68 112
'SFRS15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0862 (Fisher's exact test), Q value = 0.32

Table S6517.  Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SFRS15 MUTATED 1 3 6 4 5
SFRS15 WILD-TYPE 58 72 68 115 33
'SFRS15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S6518.  Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SFRS15 MUTATED 2 4 3 1 9
SFRS15 WILD-TYPE 49 72 58 70 86
'SFRS15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0396 (Fisher's exact test), Q value = 0.21

Table S6519.  Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SFRS15 MUTATED 0 3 1 3 2 2 1 4 3
SFRS15 WILD-TYPE 69 45 38 13 51 18 20 34 47

Figure S1897.  Get High-res Image Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SFRS15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.17

Table S6520.  Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SFRS15 MUTATED 0 0 1 0 3 0
SFRS15 WILD-TYPE 13 16 13 11 8 9

Figure S1898.  Get High-res Image Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SFRS15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0262 (Fisher's exact test), Q value = 0.17

Table S6521.  Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SFRS15 MUTATED 0 0 0 3 1 0 0 0 0
SFRS15 WILD-TYPE 11 7 7 6 7 7 11 9 5

Figure S1899.  Get High-res Image Gene #625: 'SFRS15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EIF2AK4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.19

Table S6522.  Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EIF2AK4 MUTATED 3 0 0 3 0
EIF2AK4 WILD-TYPE 29 18 46 24 23

Figure S1900.  Get High-res Image Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EIF2AK4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0866 (Fisher's exact test), Q value = 0.32

Table S6523.  Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EIF2AK4 MUTATED 4 2 0
EIF2AK4 WILD-TYPE 39 65 36
'EIF2AK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.096

Table S6524.  Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EIF2AK4 MUTATED 0 4 13
EIF2AK4 WILD-TYPE 42 169 134

Figure S1901.  Get High-res Image Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EIF2AK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00619 (Fisher's exact test), Q value = 0.074

Table S6525.  Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EIF2AK4 MUTATED 7 0 6
EIF2AK4 WILD-TYPE 55 73 69

Figure S1902.  Get High-res Image Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'EIF2AK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.01

Table S6526.  Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EIF2AK4 MUTATED 0 3 13
EIF2AK4 WILD-TYPE 70 117 87

Figure S1903.  Get High-res Image Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'EIF2AK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.096 (Fisher's exact test), Q value = 0.34

Table S6527.  Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EIF2AK4 MUTATED 3 1 0 0 2 6 4 0 0
EIF2AK4 WILD-TYPE 38 25 30 29 37 63 16 14 22
'EIF2AK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.21

Table S6528.  Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EIF2AK4 MUTATED 1 5 7 5
EIF2AK4 WILD-TYPE 99 67 65 116

Figure S1904.  Get High-res Image Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EIF2AK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00171 (Fisher's exact test), Q value = 0.034

Table S6529.  Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EIF2AK4 MUTATED 5 1 6 1 5
EIF2AK4 WILD-TYPE 54 74 68 118 33

Figure S1905.  Get High-res Image Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EIF2AK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 0.24

Table S6530.  Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EIF2AK4 MUTATED 1 7 4 0 6
EIF2AK4 WILD-TYPE 50 69 57 71 89

Figure S1906.  Get High-res Image Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EIF2AK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00452 (Fisher's exact test), Q value = 0.062

Table S6531.  Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EIF2AK4 MUTATED 2 7 0 2 1 0 0 5 1
EIF2AK4 WILD-TYPE 67 41 39 14 52 20 21 33 49

Figure S1907.  Get High-res Image Gene #626: 'EIF2AK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LAS1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0875 (Fisher's exact test), Q value = 0.32

Table S6532.  Gene #627: 'LAS1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LAS1L MUTATED 0 2 7
LAS1L WILD-TYPE 42 171 140
'LAS1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S6533.  Gene #627: 'LAS1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LAS1L MUTATED 3 1 3
LAS1L WILD-TYPE 59 72 72
'LAS1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S6534.  Gene #627: 'LAS1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LAS1L MUTATED 1 5 2
LAS1L WILD-TYPE 69 115 98
'LAS1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.79

Table S6535.  Gene #627: 'LAS1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LAS1L MUTATED 1 1 0 1 1 2 0 2 0
LAS1L WILD-TYPE 40 25 30 28 38 67 20 12 22
'LAS1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S6536.  Gene #627: 'LAS1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LAS1L MUTATED 1 4 2 2
LAS1L WILD-TYPE 99 68 70 119
'LAS1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S6537.  Gene #627: 'LAS1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LAS1L MUTATED 1 1 5 0 2
LAS1L WILD-TYPE 58 74 69 119 36

Figure S1908.  Get High-res Image Gene #627: 'LAS1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LAS1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S6538.  Gene #627: 'LAS1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LAS1L MUTATED 2 4 0 1 2
LAS1L WILD-TYPE 49 72 61 70 93
'LAS1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S6539.  Gene #627: 'LAS1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LAS1L MUTATED 4 1 0 1 0 1 0 2 0
LAS1L WILD-TYPE 65 47 39 15 53 19 21 36 50
'LAS1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S6540.  Gene #627: 'LAS1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LAS1L MUTATED 0 0 2 0 1 0
LAS1L WILD-TYPE 13 16 12 11 10 9
'LAS1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S6541.  Gene #627: 'LAS1L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LAS1L MUTATED 0 0 0 1 1 0 1 0 0
LAS1L WILD-TYPE 11 7 7 8 7 7 10 9 5
'CATSPER4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S6542.  Gene #628: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CATSPER4 MUTATED 2 0 1 0 0
CATSPER4 WILD-TYPE 30 18 45 27 23
'CATSPER4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S6543.  Gene #628: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CATSPER4 MUTATED 2 1 0
CATSPER4 WILD-TYPE 41 66 36
'CATSPER4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S6544.  Gene #628: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CATSPER4 MUTATED 0 3 8
CATSPER4 WILD-TYPE 42 170 139
'CATSPER4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.77

Table S6545.  Gene #628: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CATSPER4 MUTATED 3 1 4
CATSPER4 WILD-TYPE 59 72 71
'CATSPER4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S6546.  Gene #628: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CATSPER4 MUTATED 0 4 4
CATSPER4 WILD-TYPE 70 116 96
'CATSPER4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S6547.  Gene #628: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CATSPER4 MUTATED 0 1 0 2 1 3 1 0 0
CATSPER4 WILD-TYPE 41 25 30 27 38 66 19 14 22
'CATSPER4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.1

Table S6548.  Gene #628: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CATSPER4 MUTATED 0 4 5 2
CATSPER4 WILD-TYPE 100 68 67 119

Figure S1909.  Get High-res Image Gene #628: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CATSPER4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0953 (Fisher's exact test), Q value = 0.34

Table S6549.  Gene #628: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CATSPER4 MUTATED 2 1 5 1 2
CATSPER4 WILD-TYPE 57 74 69 118 36
'CATSPER4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.63

Table S6550.  Gene #628: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CATSPER4 MUTATED 1 4 3 0 3
CATSPER4 WILD-TYPE 50 72 58 71 92
'CATSPER4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S6551.  Gene #628: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CATSPER4 MUTATED 1 4 0 1 1 1 1 2 0
CATSPER4 WILD-TYPE 68 44 39 15 52 19 20 36 50
'CATSPER4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S6552.  Gene #628: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CATSPER4 MUTATED 0 1 0 0 1 1
CATSPER4 WILD-TYPE 13 15 14 11 10 8
'CATSPER4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S6553.  Gene #628: 'CATSPER4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CATSPER4 MUTATED 1 1 0 0 0 0 1 0 0
CATSPER4 WILD-TYPE 10 6 7 9 8 7 10 9 5
'OR4M2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.48

Table S6554.  Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OR4M2 MUTATED 1 0 0 2 0
OR4M2 WILD-TYPE 31 18 46 25 23
'OR4M2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S6555.  Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OR4M2 MUTATED 2 1 0
OR4M2 WILD-TYPE 41 66 36
'OR4M2 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0048

Table S6556.  Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR4M2 MUTATED 1 0 13
OR4M2 WILD-TYPE 41 173 134

Figure S1910.  Get High-res Image Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OR4M2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S6557.  Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR4M2 MUTATED 5 0 6
OR4M2 WILD-TYPE 57 73 69

Figure S1911.  Get High-res Image Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'OR4M2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0777 (Fisher's exact test), Q value = 0.3

Table S6558.  Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR4M2 MUTATED 0 7 6
OR4M2 WILD-TYPE 70 113 94
'OR4M2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.98

Table S6559.  Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR4M2 MUTATED 1 0 1 3 2 5 1 0 0
OR4M2 WILD-TYPE 40 26 29 26 37 64 19 14 22
'OR4M2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00553 (Fisher's exact test), Q value = 0.07

Table S6560.  Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR4M2 MUTATED 0 6 5 3
OR4M2 WILD-TYPE 100 66 67 118

Figure S1912.  Get High-res Image Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR4M2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S6561.  Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR4M2 MUTATED 1 0 10 1 2
OR4M2 WILD-TYPE 58 75 64 118 36

Figure S1913.  Get High-res Image Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR4M2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.14

Table S6562.  Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR4M2 MUTATED 1 8 2 0 3
OR4M2 WILD-TYPE 50 68 59 71 92

Figure S1914.  Get High-res Image Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR4M2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0011 (Fisher's exact test), Q value = 0.026

Table S6563.  Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR4M2 MUTATED 1 5 0 4 1 1 0 2 0
OR4M2 WILD-TYPE 68 43 39 12 52 19 21 36 50

Figure S1915.  Get High-res Image Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OR4M2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00644 (Fisher's exact test), Q value = 0.075

Table S6564.  Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR4M2 MUTATED 0 0 0 0 3 0
OR4M2 WILD-TYPE 13 16 14 11 8 9

Figure S1916.  Get High-res Image Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'OR4M2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S6565.  Gene #629: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR4M2 MUTATED 0 0 0 2 0 0 1 0 0
OR4M2 WILD-TYPE 11 7 7 7 8 7 10 9 5
'HIVEP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00734 (Fisher's exact test), Q value = 0.08

Table S6566.  Gene #630: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HIVEP2 MUTATED 5 0 0 1 0
HIVEP2 WILD-TYPE 27 18 46 26 23

Figure S1917.  Get High-res Image Gene #630: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HIVEP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S6567.  Gene #630: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HIVEP2 MUTATED 4 1 1
HIVEP2 WILD-TYPE 39 66 35
'HIVEP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00765 (Fisher's exact test), Q value = 0.082

Table S6568.  Gene #630: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HIVEP2 MUTATED 4 3 12
HIVEP2 WILD-TYPE 38 170 135

Figure S1918.  Get High-res Image Gene #630: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HIVEP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S6569.  Gene #630: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HIVEP2 MUTATED 5 4 4
HIVEP2 WILD-TYPE 57 69 71
'HIVEP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.097

Table S6570.  Gene #630: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HIVEP2 MUTATED 0 6 10
HIVEP2 WILD-TYPE 70 114 90

Figure S1919.  Get High-res Image Gene #630: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'HIVEP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.8

Table S6571.  Gene #630: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HIVEP2 MUTATED 3 2 0 1 3 7 0 0 0
HIVEP2 WILD-TYPE 38 24 30 28 36 62 20 14 22
'HIVEP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.987 (Fisher's exact test), Q value = 1

Table S6572.  Gene #630: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HIVEP2 MUTATED 5 3 4 7
HIVEP2 WILD-TYPE 95 69 68 114
'HIVEP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S6573.  Gene #630: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HIVEP2 MUTATED 5 2 5 2 5
HIVEP2 WILD-TYPE 54 73 69 117 33

Figure S1920.  Get High-res Image Gene #630: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HIVEP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S6574.  Gene #630: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HIVEP2 MUTATED 3 4 2 4 6
HIVEP2 WILD-TYPE 48 72 59 67 89
'HIVEP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S6575.  Gene #630: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HIVEP2 MUTATED 3 4 0 2 3 0 1 5 1
HIVEP2 WILD-TYPE 66 44 39 14 50 20 20 33 49
'HIVEP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.65

Table S6576.  Gene #630: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HIVEP2 MUTATED 0 1 0 1 2 0
HIVEP2 WILD-TYPE 13 15 14 10 9 9
'HIVEP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S6577.  Gene #630: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HIVEP2 MUTATED 0 0 0 1 0 2 1 0 0
HIVEP2 WILD-TYPE 11 7 7 8 8 5 10 9 5
'ZC3H13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00213 (Fisher's exact test), Q value = 0.039

Table S6578.  Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZC3H13 MUTATED 10 0 2 4 1
ZC3H13 WILD-TYPE 22 18 44 23 22

Figure S1921.  Get High-res Image Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZC3H13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0075

Table S6579.  Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZC3H13 MUTATED 13 3 1
ZC3H13 WILD-TYPE 30 64 35

Figure S1922.  Get High-res Image Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S6580.  Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZC3H13 MUTATED 3 6 24
ZC3H13 WILD-TYPE 39 167 123

Figure S1923.  Get High-res Image Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZC3H13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.96

Table S6581.  Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZC3H13 MUTATED 6 4 7
ZC3H13 WILD-TYPE 56 69 68
'ZC3H13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.26

Table S6582.  Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZC3H13 MUTATED 5 8 16
ZC3H13 WILD-TYPE 65 112 84
'ZC3H13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S6583.  Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZC3H13 MUTATED 4 1 3 1 4 9 5 0 2
ZC3H13 WILD-TYPE 37 25 27 28 35 60 15 14 20
'ZC3H13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S6584.  Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZC3H13 MUTATED 3 9 5 17
ZC3H13 WILD-TYPE 97 63 67 104

Figure S1924.  Get High-res Image Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZC3H13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S6585.  Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZC3H13 MUTATED 2 3 9 6 14
ZC3H13 WILD-TYPE 57 72 65 113 24

Figure S1925.  Get High-res Image Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S6586.  Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZC3H13 MUTATED 0 7 4 5 15
ZC3H13 WILD-TYPE 51 69 57 66 80

Figure S1926.  Get High-res Image Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00857 (Fisher's exact test), Q value = 0.087

Table S6587.  Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZC3H13 MUTATED 3 5 2 2 1 3 1 10 4
ZC3H13 WILD-TYPE 66 43 37 14 52 17 20 28 46

Figure S1927.  Get High-res Image Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.75

Table S6588.  Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZC3H13 MUTATED 0 1 0 1 2 1
ZC3H13 WILD-TYPE 13 15 14 10 9 8
'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.983 (Fisher's exact test), Q value = 1

Table S6589.  Gene #631: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZC3H13 MUTATED 1 0 1 0 1 0 1 1 0
ZC3H13 WILD-TYPE 10 7 6 9 7 7 10 8 5
'GPR115 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0539 (Fisher's exact test), Q value = 0.25

Table S6590.  Gene #632: 'GPR115 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GPR115 MUTATED 3 0 0 0 0
GPR115 WILD-TYPE 29 18 46 27 23
'GPR115 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.039 (Fisher's exact test), Q value = 0.21

Table S6591.  Gene #632: 'GPR115 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GPR115 MUTATED 3 0 0
GPR115 WILD-TYPE 40 67 36

Figure S1928.  Get High-res Image Gene #632: 'GPR115 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPR115 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.16

Table S6592.  Gene #632: 'GPR115 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GPR115 MUTATED 3 3 11
GPR115 WILD-TYPE 39 170 136

Figure S1929.  Get High-res Image Gene #632: 'GPR115 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPR115 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S6593.  Gene #632: 'GPR115 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GPR115 MUTATED 4 4 7
GPR115 WILD-TYPE 58 69 68
'GPR115 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S6594.  Gene #632: 'GPR115 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GPR115 MUTATED 2 7 7
GPR115 WILD-TYPE 68 113 93
'GPR115 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.92

Table S6595.  Gene #632: 'GPR115 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GPR115 MUTATED 1 1 1 3 4 4 2 0 0
GPR115 WILD-TYPE 40 25 29 26 35 65 18 14 22
'GPR115 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.88

Table S6596.  Gene #632: 'GPR115 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GPR115 MUTATED 4 6 3 5
GPR115 WILD-TYPE 96 66 69 116
'GPR115 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S6597.  Gene #632: 'GPR115 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GPR115 MUTATED 2 4 7 2 3
GPR115 WILD-TYPE 57 71 67 117 35
'GPR115 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.82

Table S6598.  Gene #632: 'GPR115 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GPR115 MUTATED 1 7 3 3 4
GPR115 WILD-TYPE 50 69 58 68 91
'GPR115 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S6599.  Gene #632: 'GPR115 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GPR115 MUTATED 4 3 0 2 4 0 0 2 3
GPR115 WILD-TYPE 65 45 39 14 49 20 21 36 47
'GPR115 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S6600.  Gene #632: 'GPR115 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GPR115 MUTATED 3 0 1 0 1 0
GPR115 WILD-TYPE 10 16 13 11 10 9
'GPR115 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S6601.  Gene #632: 'GPR115 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GPR115 MUTATED 0 0 1 2 1 0 1 0 0
GPR115 WILD-TYPE 11 7 6 7 7 7 10 9 5
'NCOA6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.17

Table S6602.  Gene #633: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NCOA6 MUTATED 4 0 0 2 0
NCOA6 WILD-TYPE 28 18 46 25 23

Figure S1930.  Get High-res Image Gene #633: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NCOA6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S6603.  Gene #633: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NCOA6 MUTATED 5 1 0
NCOA6 WILD-TYPE 38 66 36

Figure S1931.  Get High-res Image Gene #633: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NCOA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00683 (Fisher's exact test), Q value = 0.077

Table S6604.  Gene #633: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NCOA6 MUTATED 2 5 17
NCOA6 WILD-TYPE 40 168 130

Figure S1932.  Get High-res Image Gene #633: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NCOA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S6605.  Gene #633: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NCOA6 MUTATED 8 3 7
NCOA6 WILD-TYPE 54 70 68
'NCOA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S6606.  Gene #633: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NCOA6 MUTATED 3 8 9
NCOA6 WILD-TYPE 67 112 91
'NCOA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S6607.  Gene #633: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NCOA6 MUTATED 2 1 2 1 2 7 2 1 2
NCOA6 WILD-TYPE 39 25 28 28 37 62 18 13 20
'NCOA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 0.29

Table S6608.  Gene #633: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NCOA6 MUTATED 4 4 10 6
NCOA6 WILD-TYPE 96 68 62 115
'NCOA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00636 (Fisher's exact test), Q value = 0.075

Table S6609.  Gene #633: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NCOA6 MUTATED 3 4 10 2 5
NCOA6 WILD-TYPE 56 71 64 117 33

Figure S1933.  Get High-res Image Gene #633: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NCOA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0671 (Fisher's exact test), Q value = 0.28

Table S6610.  Gene #633: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NCOA6 MUTATED 2 10 4 1 6
NCOA6 WILD-TYPE 49 66 57 70 89
'NCOA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0585 (Fisher's exact test), Q value = 0.26

Table S6611.  Gene #633: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NCOA6 MUTATED 3 5 1 4 3 2 0 4 1
NCOA6 WILD-TYPE 66 43 38 12 50 18 21 34 49
'NCOA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S6612.  Gene #633: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NCOA6 MUTATED 0 1 2 0 3 1
NCOA6 WILD-TYPE 13 15 12 11 8 8
'NCOA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S6613.  Gene #633: 'NCOA6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NCOA6 MUTATED 1 0 0 0 2 2 2 0 0
NCOA6 WILD-TYPE 10 7 7 9 6 5 9 9 5
'LAMC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S6614.  Gene #634: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LAMC1 MUTATED 3 0 1 3 0
LAMC1 WILD-TYPE 29 18 45 24 23
'LAMC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S6615.  Gene #634: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LAMC1 MUTATED 4 3 0
LAMC1 WILD-TYPE 39 64 36
'LAMC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S6616.  Gene #634: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LAMC1 MUTATED 1 8 12
LAMC1 WILD-TYPE 41 165 135
'LAMC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S6617.  Gene #634: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LAMC1 MUTATED 7 4 3
LAMC1 WILD-TYPE 55 69 72
'LAMC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S6618.  Gene #634: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LAMC1 MUTATED 2 12 5
LAMC1 WILD-TYPE 68 108 95
'LAMC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0401 (Fisher's exact test), Q value = 0.21

Table S6619.  Gene #634: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LAMC1 MUTATED 0 3 4 2 3 3 4 0 0
LAMC1 WILD-TYPE 41 23 26 27 36 66 16 14 22

Figure S1934.  Get High-res Image Gene #634: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'LAMC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S6620.  Gene #634: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LAMC1 MUTATED 6 3 4 8
LAMC1 WILD-TYPE 94 69 68 113
'LAMC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S6621.  Gene #634: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LAMC1 MUTATED 3 5 5 4 4
LAMC1 WILD-TYPE 56 70 69 115 34
'LAMC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S6622.  Gene #634: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LAMC1 MUTATED 2 7 2 2 6
LAMC1 WILD-TYPE 49 69 59 69 89
'LAMC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S6623.  Gene #634: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LAMC1 MUTATED 3 5 2 1 2 1 0 3 2
LAMC1 WILD-TYPE 66 43 37 15 51 19 21 35 48
'LAMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S6624.  Gene #634: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LAMC1 MUTATED 1 0 0 0 1 1
LAMC1 WILD-TYPE 12 16 14 11 10 8
'LAMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.86

Table S6625.  Gene #634: 'LAMC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LAMC1 MUTATED 0 0 1 0 1 0 0 1 0
LAMC1 WILD-TYPE 11 7 6 9 7 7 11 8 5
'CYP1B1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S6626.  Gene #635: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CYP1B1 MUTATED 2 0 0 1 0
CYP1B1 WILD-TYPE 30 18 46 26 23
'CYP1B1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6627.  Gene #635: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CYP1B1 MUTATED 1 1 1
CYP1B1 WILD-TYPE 42 66 35
'CYP1B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S6628.  Gene #635: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CYP1B1 MUTATED 1 3 6
CYP1B1 WILD-TYPE 41 170 141
'CYP1B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S6629.  Gene #635: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CYP1B1 MUTATED 3 2 3
CYP1B1 WILD-TYPE 59 71 72
'CYP1B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S6630.  Gene #635: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CYP1B1 MUTATED 1 4 5
CYP1B1 WILD-TYPE 69 116 95
'CYP1B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S6631.  Gene #635: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CYP1B1 MUTATED 2 1 0 1 2 3 1 0 0
CYP1B1 WILD-TYPE 39 25 30 28 37 66 19 14 22
'CYP1B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S6632.  Gene #635: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CYP1B1 MUTATED 1 4 4 2
CYP1B1 WILD-TYPE 99 68 68 119
'CYP1B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S6633.  Gene #635: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CYP1B1 MUTATED 4 1 3 2 1
CYP1B1 WILD-TYPE 55 74 71 117 37
'CYP1B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S6634.  Gene #635: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CYP1B1 MUTATED 0 4 4 1 2
CYP1B1 WILD-TYPE 51 72 57 70 93
'CYP1B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.97

Table S6635.  Gene #635: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CYP1B1 MUTATED 2 3 1 1 2 1 0 1 0
CYP1B1 WILD-TYPE 67 45 38 15 51 19 21 37 50
'CYP1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S6636.  Gene #635: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CYP1B1 MUTATED 1 1 0 1 0 0
CYP1B1 WILD-TYPE 12 15 14 10 11 9
'CYP1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S6637.  Gene #635: 'CYP1B1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CYP1B1 MUTATED 0 1 1 0 0 0 0 1 0
CYP1B1 WILD-TYPE 11 6 6 9 8 7 11 8 5
'AFM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0965 (Fisher's exact test), Q value = 0.34

Table S6638.  Gene #636: 'AFM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AFM MUTATED 3 0 0 1 0
AFM WILD-TYPE 29 18 46 26 23
'AFM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S6639.  Gene #636: 'AFM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AFM MUTATED 3 1 0
AFM WILD-TYPE 40 66 36
'AFM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.54

Table S6640.  Gene #636: 'AFM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AFM MUTATED 0 5 8
AFM WILD-TYPE 42 168 139
'AFM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S6641.  Gene #636: 'AFM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AFM MUTATED 1 3 6
AFM WILD-TYPE 61 70 69
'AFM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S6642.  Gene #636: 'AFM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AFM MUTATED 2 8 2
AFM WILD-TYPE 68 112 98
'AFM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S6643.  Gene #636: 'AFM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AFM MUTATED 1 0 2 2 2 2 1 0 2
AFM WILD-TYPE 40 26 28 27 37 67 19 14 20
'AFM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S6644.  Gene #636: 'AFM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AFM MUTATED 4 3 2 4
AFM WILD-TYPE 96 69 70 117
'AFM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.084 (Fisher's exact test), Q value = 0.31

Table S6645.  Gene #636: 'AFM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AFM MUTATED 2 2 5 1 3
AFM WILD-TYPE 57 73 69 118 35
'AFM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0529 (Fisher's exact test), Q value = 0.25

Table S6646.  Gene #636: 'AFM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AFM MUTATED 5 3 1 0 3
AFM WILD-TYPE 46 73 60 71 92
'AFM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0969 (Fisher's exact test), Q value = 0.34

Table S6647.  Gene #636: 'AFM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AFM MUTATED 2 3 0 0 3 3 0 1 0
AFM WILD-TYPE 67 45 39 16 50 17 21 37 50
'AFM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S6648.  Gene #636: 'AFM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AFM MUTATED 1 0 0 0 2 0
AFM WILD-TYPE 12 16 14 11 9 9
'AFM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S6649.  Gene #636: 'AFM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AFM MUTATED 0 0 0 1 0 0 1 0 1
AFM WILD-TYPE 11 7 7 8 8 7 10 9 4
'SLC22A9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0876 (Fisher's exact test), Q value = 0.32

Table S6650.  Gene #637: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC22A9 MUTATED 0 2 7
SLC22A9 WILD-TYPE 42 171 140
'SLC22A9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0701 (Fisher's exact test), Q value = 0.29

Table S6651.  Gene #637: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC22A9 MUTATED 5 1 1
SLC22A9 WILD-TYPE 57 72 74
'SLC22A9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S6652.  Gene #637: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC22A9 MUTATED 1 1 4
SLC22A9 WILD-TYPE 69 119 96
'SLC22A9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S6653.  Gene #637: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC22A9 MUTATED 1 0 0 0 0 5 0 0 0
SLC22A9 WILD-TYPE 40 26 30 29 39 64 20 14 22
'SLC22A9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0978 (Fisher's exact test), Q value = 0.34

Table S6654.  Gene #637: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC22A9 MUTATED 1 1 5 2
SLC22A9 WILD-TYPE 99 71 67 119
'SLC22A9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.62

Table S6655.  Gene #637: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC22A9 MUTATED 3 1 3 1 1
SLC22A9 WILD-TYPE 56 74 71 118 37
'SLC22A9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S6656.  Gene #637: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC22A9 MUTATED 0 4 2 2 1
SLC22A9 WILD-TYPE 51 72 59 69 94
'SLC22A9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S6657.  Gene #637: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC22A9 MUTATED 4 1 0 1 2 0 0 1 0
SLC22A9 WILD-TYPE 65 47 39 15 51 20 21 37 50
'SLC22A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.97

Table S6658.  Gene #637: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLC22A9 MUTATED 0 1 0 1 1 1
SLC22A9 WILD-TYPE 13 15 14 10 10 8
'SLC22A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S6659.  Gene #637: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLC22A9 MUTATED 1 0 0 0 0 2 0 1 0
SLC22A9 WILD-TYPE 10 7 7 9 8 5 11 8 5
'DDX59 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S6660.  Gene #638: 'DDX59 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DDX59 MUTATED 1 1 9
DDX59 WILD-TYPE 41 172 138

Figure S1935.  Get High-res Image Gene #638: 'DDX59 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DDX59 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S6661.  Gene #638: 'DDX59 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DDX59 MUTATED 5 1 5
DDX59 WILD-TYPE 57 72 70
'DDX59 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S6662.  Gene #638: 'DDX59 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DDX59 MUTATED 0 2 7
DDX59 WILD-TYPE 70 118 93

Figure S1936.  Get High-res Image Gene #638: 'DDX59 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DDX59 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.89

Table S6663.  Gene #638: 'DDX59 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DDX59 MUTATED 2 1 0 1 0 5 0 0 0
DDX59 WILD-TYPE 39 25 30 28 39 64 20 14 22
'DDX59 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S6664.  Gene #638: 'DDX59 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DDX59 MUTATED 1 6 3 1
DDX59 WILD-TYPE 99 66 69 120

Figure S1937.  Get High-res Image Gene #638: 'DDX59 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DDX59 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0453 (Fisher's exact test), Q value = 0.23

Table S6665.  Gene #638: 'DDX59 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DDX59 MUTATED 1 3 6 1 0
DDX59 WILD-TYPE 58 72 68 118 38

Figure S1938.  Get High-res Image Gene #638: 'DDX59 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DDX59 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S6666.  Gene #638: 'DDX59 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DDX59 MUTATED 0 5 3 1 2
DDX59 WILD-TYPE 51 71 58 70 93
'DDX59 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.45

Table S6667.  Gene #638: 'DDX59 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DDX59 MUTATED 5 3 0 1 0 0 0 0 2
DDX59 WILD-TYPE 64 45 39 15 53 20 21 38 48
'SLC25A13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.78

Table S6668.  Gene #639: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC25A13 MUTATED 0 1 1 2 1
SLC25A13 WILD-TYPE 32 17 45 25 22
'SLC25A13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S6669.  Gene #639: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC25A13 MUTATED 1 2 2
SLC25A13 WILD-TYPE 42 65 34
'SLC25A13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S6670.  Gene #639: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC25A13 MUTATED 1 5 8
SLC25A13 WILD-TYPE 41 168 139
'SLC25A13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.63

Table S6671.  Gene #639: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC25A13 MUTATED 2 2 6
SLC25A13 WILD-TYPE 60 71 69
'SLC25A13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S6672.  Gene #639: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC25A13 MUTATED 2 6 5
SLC25A13 WILD-TYPE 68 114 95
'SLC25A13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S6673.  Gene #639: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC25A13 MUTATED 2 0 1 1 2 3 2 1 1
SLC25A13 WILD-TYPE 39 26 29 28 37 66 18 13 21
'SLC25A13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.058 (Fisher's exact test), Q value = 0.26

Table S6674.  Gene #639: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC25A13 MUTATED 1 6 4 3
SLC25A13 WILD-TYPE 99 66 68 118
'SLC25A13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S6675.  Gene #639: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC25A13 MUTATED 3 1 5 4 1
SLC25A13 WILD-TYPE 56 74 69 115 37
'SLC25A13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S6676.  Gene #639: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC25A13 MUTATED 4 4 0 2 3
SLC25A13 WILD-TYPE 47 72 61 69 92
'SLC25A13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0319 (Fisher's exact test), Q value = 0.19

Table S6677.  Gene #639: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC25A13 MUTATED 1 2 0 2 1 3 1 0 3
SLC25A13 WILD-TYPE 68 46 39 14 52 17 20 38 47

Figure S1939.  Get High-res Image Gene #639: 'SLC25A13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EXD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S6678.  Gene #640: 'EXD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EXD2 MUTATED 2 1 7
EXD2 WILD-TYPE 40 172 140

Figure S1940.  Get High-res Image Gene #640: 'EXD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EXD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S6679.  Gene #640: 'EXD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EXD2 MUTATED 4 2 2
EXD2 WILD-TYPE 58 71 73
'EXD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S6680.  Gene #640: 'EXD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EXD2 MUTATED 3 1 5
EXD2 WILD-TYPE 67 119 95
'EXD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.97

Table S6681.  Gene #640: 'EXD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EXD2 MUTATED 3 0 0 1 1 3 0 1 0
EXD2 WILD-TYPE 38 26 30 28 38 66 20 13 22
'EXD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.89

Table S6682.  Gene #640: 'EXD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EXD2 MUTATED 2 3 3 2
EXD2 WILD-TYPE 98 69 69 119
'EXD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S6683.  Gene #640: 'EXD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EXD2 MUTATED 3 1 4 0 2
EXD2 WILD-TYPE 56 74 70 119 36

Figure S1941.  Get High-res Image Gene #640: 'EXD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EXD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S6684.  Gene #640: 'EXD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EXD2 MUTATED 1 3 4 0 1
EXD2 WILD-TYPE 50 73 57 71 94
'EXD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S6685.  Gene #640: 'EXD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EXD2 MUTATED 2 3 0 0 3 0 0 1 0
EXD2 WILD-TYPE 67 45 39 16 50 20 21 37 50
'EXD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S6686.  Gene #640: 'EXD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EXD2 MUTATED 0 1 1 1 0 0
EXD2 WILD-TYPE 13 15 13 10 11 9
'EXD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S6687.  Gene #640: 'EXD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EXD2 MUTATED 0 0 1 0 1 1 0 0 0
EXD2 WILD-TYPE 11 7 6 9 7 6 11 9 5
'ATP8B2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0971 (Fisher's exact test), Q value = 0.34

Table S6688.  Gene #641: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATP8B2 MUTATED 3 0 0 1 0
ATP8B2 WILD-TYPE 29 18 46 26 23
'ATP8B2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S6689.  Gene #641: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATP8B2 MUTATED 3 1 0
ATP8B2 WILD-TYPE 40 66 36
'ATP8B2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.013

Table S6690.  Gene #641: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATP8B2 MUTATED 0 2 15
ATP8B2 WILD-TYPE 42 171 132

Figure S1942.  Get High-res Image Gene #641: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP8B2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.79

Table S6691.  Gene #641: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATP8B2 MUTATED 3 3 7
ATP8B2 WILD-TYPE 59 70 68
'ATP8B2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S6692.  Gene #641: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATP8B2 MUTATED 1 8 6
ATP8B2 WILD-TYPE 69 112 94
'ATP8B2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S6693.  Gene #641: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATP8B2 MUTATED 1 2 1 3 0 7 1 0 0
ATP8B2 WILD-TYPE 40 24 29 26 39 62 19 14 22
'ATP8B2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.91

Table S6694.  Gene #641: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATP8B2 MUTATED 3 5 4 5
ATP8B2 WILD-TYPE 97 67 68 116
'ATP8B2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S6695.  Gene #641: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATP8B2 MUTATED 1 3 7 3 3
ATP8B2 WILD-TYPE 58 72 67 116 35
'ATP8B2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S6696.  Gene #641: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATP8B2 MUTATED 1 7 3 2 4
ATP8B2 WILD-TYPE 50 69 58 69 91
'ATP8B2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S6697.  Gene #641: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATP8B2 MUTATED 2 4 1 2 3 1 1 3 0
ATP8B2 WILD-TYPE 67 44 38 14 50 19 20 35 50
'ATP8B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0672 (Fisher's exact test), Q value = 0.28

Table S6698.  Gene #641: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ATP8B2 MUTATED 2 0 0 0 2 0
ATP8B2 WILD-TYPE 11 16 14 11 9 9
'ATP8B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S6699.  Gene #641: 'ATP8B2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ATP8B2 MUTATED 0 0 0 1 1 0 1 1 0
ATP8B2 WILD-TYPE 11 7 7 8 7 7 10 8 5
'TBL1XR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0749 (Fisher's exact test), Q value = 0.3

Table S6700.  Gene #642: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TBL1XR1 MUTATED 3 0 0 2 0
TBL1XR1 WILD-TYPE 29 18 46 25 23
'TBL1XR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S6701.  Gene #642: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TBL1XR1 MUTATED 3 1 1
TBL1XR1 WILD-TYPE 40 66 35
'TBL1XR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00706 (Fisher's exact test), Q value = 0.079

Table S6702.  Gene #642: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TBL1XR1 MUTATED 0 2 11
TBL1XR1 WILD-TYPE 42 171 136

Figure S1943.  Get High-res Image Gene #642: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TBL1XR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 0.29

Table S6703.  Gene #642: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TBL1XR1 MUTATED 5 1 1
TBL1XR1 WILD-TYPE 57 72 74
'TBL1XR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S6704.  Gene #642: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TBL1XR1 MUTATED 3 3 4
TBL1XR1 WILD-TYPE 67 117 96
'TBL1XR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S6705.  Gene #642: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TBL1XR1 MUTATED 1 2 2 0 1 4 0 0 0
TBL1XR1 WILD-TYPE 40 24 28 29 38 65 20 14 22
'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0461 (Fisher's exact test), Q value = 0.23

Table S6706.  Gene #642: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TBL1XR1 MUTATED 0 2 4 7
TBL1XR1 WILD-TYPE 100 70 68 114

Figure S1944.  Get High-res Image Gene #642: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S6707.  Gene #642: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TBL1XR1 MUTATED 2 0 4 3 4
TBL1XR1 WILD-TYPE 57 75 70 116 34

Figure S1945.  Get High-res Image Gene #642: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S6708.  Gene #642: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TBL1XR1 MUTATED 1 3 2 1 5
TBL1XR1 WILD-TYPE 50 73 59 70 90
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S6709.  Gene #642: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TBL1XR1 MUTATED 2 4 0 0 1 1 1 2 1
TBL1XR1 WILD-TYPE 67 44 39 16 52 19 20 36 49
'SPANXC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S6710.  Gene #643: 'SPANXC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SPANXC MUTATED 0 1 3
SPANXC WILD-TYPE 42 172 144
'SPANXC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S6711.  Gene #643: 'SPANXC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SPANXC MUTATED 0 0 3
SPANXC WILD-TYPE 62 73 72
'SPANXC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S6712.  Gene #643: 'SPANXC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SPANXC MUTATED 1 0 2
SPANXC WILD-TYPE 69 120 98
'SPANXC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S6713.  Gene #643: 'SPANXC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SPANXC MUTATED 1 0 0 0 0 1 1 0 0
SPANXC WILD-TYPE 40 26 30 29 39 68 19 14 22
'SPANXC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.15

Table S6714.  Gene #643: 'SPANXC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SPANXC MUTATED 0 3 1 0
SPANXC WILD-TYPE 100 69 71 121

Figure S1946.  Get High-res Image Gene #643: 'SPANXC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SPANXC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.47

Table S6715.  Gene #643: 'SPANXC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SPANXC MUTATED 0 0 3 1 0
SPANXC WILD-TYPE 59 75 71 118 38
'SPANXC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0723 (Fisher's exact test), Q value = 0.29

Table S6716.  Gene #643: 'SPANXC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SPANXC MUTATED 0 3 1 0 0
SPANXC WILD-TYPE 51 73 60 71 95
'SPANXC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00043 (Fisher's exact test), Q value = 0.015

Table S6717.  Gene #643: 'SPANXC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SPANXC MUTATED 0 0 0 3 1 0 0 0 0
SPANXC WILD-TYPE 69 48 39 13 52 20 21 38 50

Figure S1947.  Get High-res Image Gene #643: 'SPANXC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HORMAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0975 (Fisher's exact test), Q value = 0.34

Table S6718.  Gene #644: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HORMAD1 MUTATED 1 3 9
HORMAD1 WILD-TYPE 41 170 138
'HORMAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S6719.  Gene #644: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HORMAD1 MUTATED 3 2 6
HORMAD1 WILD-TYPE 59 71 69
'HORMAD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S6720.  Gene #644: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HORMAD1 MUTATED 1 6 4
HORMAD1 WILD-TYPE 69 114 96
'HORMAD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S6721.  Gene #644: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HORMAD1 MUTATED 1 1 1 1 0 4 1 1 1
HORMAD1 WILD-TYPE 40 25 29 28 39 65 19 13 21
'HORMAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S6722.  Gene #644: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HORMAD1 MUTATED 3 4 4 2
HORMAD1 WILD-TYPE 97 68 68 119
'HORMAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00083 (Fisher's exact test), Q value = 0.022

Table S6723.  Gene #644: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HORMAD1 MUTATED 0 2 9 1 1
HORMAD1 WILD-TYPE 59 73 65 118 37

Figure S1948.  Get High-res Image Gene #644: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HORMAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S6724.  Gene #644: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HORMAD1 MUTATED 2 5 2 2 1
HORMAD1 WILD-TYPE 49 71 59 69 94
'HORMAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0368 (Fisher's exact test), Q value = 0.2

Table S6725.  Gene #644: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HORMAD1 MUTATED 3 2 0 3 3 1 0 0 0
HORMAD1 WILD-TYPE 66 46 39 13 50 19 21 38 50

Figure S1949.  Get High-res Image Gene #644: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HORMAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 0.32

Table S6726.  Gene #644: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HORMAD1 MUTATED 2 1 1 0 4 0
HORMAD1 WILD-TYPE 11 15 13 11 7 9
'HORMAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0516 (Fisher's exact test), Q value = 0.24

Table S6727.  Gene #644: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HORMAD1 MUTATED 0 0 0 4 1 1 1 0 1
HORMAD1 WILD-TYPE 11 7 7 5 7 6 10 9 4
'TMEM131 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0996 (Fisher's exact test), Q value = 0.34

Table S6728.  Gene #645: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TMEM131 MUTATED 3 0 0 1 0
TMEM131 WILD-TYPE 29 18 46 26 23
'TMEM131 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S6729.  Gene #645: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TMEM131 MUTATED 2 1 1
TMEM131 WILD-TYPE 41 66 35
'TMEM131 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 0.31

Table S6730.  Gene #645: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMEM131 MUTATED 1 6 13
TMEM131 WILD-TYPE 41 167 134
'TMEM131 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S6731.  Gene #645: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TMEM131 MUTATED 6 5 6
TMEM131 WILD-TYPE 56 68 69
'TMEM131 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6732.  Gene #645: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TMEM131 MUTATED 4 8 7
TMEM131 WILD-TYPE 66 112 93
'TMEM131 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S6733.  Gene #645: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TMEM131 MUTATED 2 2 1 2 1 4 3 1 3
TMEM131 WILD-TYPE 39 24 29 27 38 65 17 13 19
'TMEM131 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 0.29

Table S6734.  Gene #645: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMEM131 MUTATED 4 9 4 4
TMEM131 WILD-TYPE 96 63 68 117
'TMEM131 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S6735.  Gene #645: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMEM131 MUTATED 2 6 8 4 1
TMEM131 WILD-TYPE 57 69 66 115 37
'TMEM131 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S6736.  Gene #645: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMEM131 MUTATED 2 8 2 4 5
TMEM131 WILD-TYPE 49 68 59 67 90
'TMEM131 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00868 (Fisher's exact test), Q value = 0.088

Table S6737.  Gene #645: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMEM131 MUTATED 4 1 1 5 5 2 1 0 2
TMEM131 WILD-TYPE 65 47 38 11 48 18 20 38 48

Figure S1950.  Get High-res Image Gene #645: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TMEM131 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0508 (Fisher's exact test), Q value = 0.24

Table S6738.  Gene #645: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TMEM131 MUTATED 0 0 0 0 2 1
TMEM131 WILD-TYPE 13 16 14 11 9 8
'TMEM131 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S6739.  Gene #645: 'TMEM131 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TMEM131 MUTATED 0 0 0 1 1 0 0 1 0
TMEM131 WILD-TYPE 11 7 7 8 7 7 11 8 5
'PVRL4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00905 (Fisher's exact test), Q value = 0.089

Table S6740.  Gene #646: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PVRL4 MUTATED 4 0 0 0 0
PVRL4 WILD-TYPE 28 18 46 27 23

Figure S1951.  Get High-res Image Gene #646: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PVRL4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00976 (Fisher's exact test), Q value = 0.093

Table S6741.  Gene #646: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PVRL4 MUTATED 4 0 0
PVRL4 WILD-TYPE 39 67 36

Figure S1952.  Get High-res Image Gene #646: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PVRL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 0.32

Table S6742.  Gene #646: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PVRL4 MUTATED 0 2 7
PVRL4 WILD-TYPE 42 171 140
'PVRL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S6743.  Gene #646: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PVRL4 MUTATED 2 1 2
PVRL4 WILD-TYPE 60 72 73
'PVRL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S6744.  Gene #646: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PVRL4 MUTATED 2 2 3
PVRL4 WILD-TYPE 68 118 97
'PVRL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.54

Table S6745.  Gene #646: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PVRL4 MUTATED 2 0 0 0 1 1 2 1 0
PVRL4 WILD-TYPE 39 26 30 29 38 68 18 13 22
'PVRL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S6746.  Gene #646: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PVRL4 MUTATED 1 3 1 4
PVRL4 WILD-TYPE 99 69 71 117
'PVRL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00616 (Fisher's exact test), Q value = 0.074

Table S6747.  Gene #646: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PVRL4 MUTATED 2 1 2 0 4
PVRL4 WILD-TYPE 57 74 72 119 34

Figure S1953.  Get High-res Image Gene #646: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PVRL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S6748.  Gene #646: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PVRL4 MUTATED 1 2 2 0 4
PVRL4 WILD-TYPE 50 74 59 71 91
'PVRL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0769 (Fisher's exact test), Q value = 0.3

Table S6749.  Gene #646: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PVRL4 MUTATED 1 2 0 1 0 1 1 3 0
PVRL4 WILD-TYPE 68 46 39 15 53 19 20 35 50
'C12ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00253 (Fisher's exact test), Q value = 0.043

Table S6750.  Gene #647: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C12ORF49 MUTATED 3 0 1
C12ORF49 WILD-TYPE 39 173 146

Figure S1954.  Get High-res Image Gene #647: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C12ORF49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S6751.  Gene #647: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C12ORF49 MUTATED 0 1 3
C12ORF49 WILD-TYPE 62 72 72
'C12ORF49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S6752.  Gene #647: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C12ORF49 MUTATED 0 2 1
C12ORF49 WILD-TYPE 70 118 99
'C12ORF49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S6753.  Gene #647: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C12ORF49 MUTATED 0 0 0 2 0 1 0 0 0
C12ORF49 WILD-TYPE 41 26 30 27 39 68 20 14 22
'C12ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.2

Table S6754.  Gene #647: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C12ORF49 MUTATED 1 3 0 0
C12ORF49 WILD-TYPE 99 69 72 121

Figure S1955.  Get High-res Image Gene #647: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C12ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0866 (Fisher's exact test), Q value = 0.32

Table S6755.  Gene #647: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C12ORF49 MUTATED 0 1 3 0 0
C12ORF49 WILD-TYPE 59 74 71 119 38
'C12ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 0.33

Table S6756.  Gene #647: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C12ORF49 MUTATED 0 3 0 1 0
C12ORF49 WILD-TYPE 51 73 61 70 95
'C12ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.017

Table S6757.  Gene #647: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C12ORF49 MUTATED 1 0 0 3 0 0 0 0 0
C12ORF49 WILD-TYPE 68 48 39 13 53 20 21 38 50

Figure S1956.  Get High-res Image Gene #647: 'C12ORF49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CWF19L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.18

Table S6758.  Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CWF19L2 MUTATED 4 0 0 1 0
CWF19L2 WILD-TYPE 28 18 46 26 23

Figure S1957.  Get High-res Image Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CWF19L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S6759.  Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CWF19L2 MUTATED 3 1 1
CWF19L2 WILD-TYPE 40 66 35
'CWF19L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0018 (Fisher's exact test), Q value = 0.035

Table S6760.  Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CWF19L2 MUTATED 0 2 13
CWF19L2 WILD-TYPE 42 171 134

Figure S1958.  Get High-res Image Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CWF19L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S6761.  Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CWF19L2 MUTATED 5 1 4
CWF19L2 WILD-TYPE 57 72 71
'CWF19L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0469 (Fisher's exact test), Q value = 0.23

Table S6762.  Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CWF19L2 MUTATED 2 1 7
CWF19L2 WILD-TYPE 68 119 93

Figure S1959.  Get High-res Image Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CWF19L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S6763.  Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CWF19L2 MUTATED 4 0 1 0 0 5 0 0 0
CWF19L2 WILD-TYPE 37 26 29 29 39 64 20 14 22
'CWF19L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S6764.  Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CWF19L2 MUTATED 2 4 4 5
CWF19L2 WILD-TYPE 98 68 68 116
'CWF19L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00843 (Fisher's exact test), Q value = 0.086

Table S6765.  Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CWF19L2 MUTATED 3 0 7 2 3
CWF19L2 WILD-TYPE 56 75 67 117 35

Figure S1960.  Get High-res Image Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CWF19L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S6766.  Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CWF19L2 MUTATED 1 7 2 1 4
CWF19L2 WILD-TYPE 50 69 59 70 91
'CWF19L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00081 (Fisher's exact test), Q value = 0.022

Table S6767.  Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CWF19L2 MUTATED 1 5 0 4 1 1 0 3 0
CWF19L2 WILD-TYPE 68 43 39 12 52 19 21 35 50

Figure S1961.  Get High-res Image Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CWF19L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00647 (Fisher's exact test), Q value = 0.075

Table S6768.  Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CWF19L2 MUTATED 0 0 0 0 3 0
CWF19L2 WILD-TYPE 13 16 14 11 8 9

Figure S1962.  Get High-res Image Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CWF19L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S6769.  Gene #648: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CWF19L2 MUTATED 0 0 0 1 0 1 1 0 0
CWF19L2 WILD-TYPE 11 7 7 8 8 6 10 9 5
'ATAD5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.17

Table S6770.  Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATAD5 MUTATED 4 0 0 2 0
ATAD5 WILD-TYPE 28 18 46 25 23

Figure S1963.  Get High-res Image Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATAD5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S6771.  Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATAD5 MUTATED 4 1 1
ATAD5 WILD-TYPE 39 66 35
'ATAD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S6772.  Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATAD5 MUTATED 2 1 18
ATAD5 WILD-TYPE 40 172 129

Figure S1964.  Get High-res Image Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATAD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S6773.  Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATAD5 MUTATED 5 2 7
ATAD5 WILD-TYPE 57 71 68
'ATAD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S6774.  Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATAD5 MUTATED 2 7 9
ATAD5 WILD-TYPE 68 113 91
'ATAD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S6775.  Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATAD5 MUTATED 2 2 1 1 2 5 2 2 1
ATAD5 WILD-TYPE 39 24 29 28 37 64 18 12 21
'ATAD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0797 (Fisher's exact test), Q value = 0.31

Table S6776.  Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATAD5 MUTATED 2 8 5 6
ATAD5 WILD-TYPE 98 64 67 115
'ATAD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0084

Table S6777.  Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATAD5 MUTATED 2 1 12 2 4
ATAD5 WILD-TYPE 57 74 62 117 34

Figure S1965.  Get High-res Image Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATAD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0578 (Fisher's exact test), Q value = 0.26

Table S6778.  Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATAD5 MUTATED 1 10 2 2 6
ATAD5 WILD-TYPE 50 66 59 69 89
'ATAD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S6779.  Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATAD5 MUTATED 3 3 0 7 1 2 1 4 0
ATAD5 WILD-TYPE 66 45 39 9 52 18 20 34 50

Figure S1966.  Get High-res Image Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATAD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.014

Table S6780.  Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ATAD5 MUTATED 0 0 1 0 5 0
ATAD5 WILD-TYPE 13 16 13 11 6 9

Figure S1967.  Get High-res Image Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ATAD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.37

Table S6781.  Gene #649: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ATAD5 MUTATED 0 0 0 3 1 0 2 0 0
ATAD5 WILD-TYPE 11 7 7 6 7 7 9 9 5
'PHF21A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00943 (Fisher's exact test), Q value = 0.091

Table S6782.  Gene #650: 'PHF21A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PHF21A MUTATED 4 0 0 0 0
PHF21A WILD-TYPE 28 18 46 27 23

Figure S1968.  Get High-res Image Gene #650: 'PHF21A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PHF21A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00992 (Fisher's exact test), Q value = 0.094

Table S6783.  Gene #650: 'PHF21A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PHF21A MUTATED 4 0 0
PHF21A WILD-TYPE 39 67 36

Figure S1969.  Get High-res Image Gene #650: 'PHF21A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PHF21A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00308 (Fisher's exact test), Q value = 0.048

Table S6784.  Gene #650: 'PHF21A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PHF21A MUTATED 0 1 10
PHF21A WILD-TYPE 42 172 137

Figure S1970.  Get High-res Image Gene #650: 'PHF21A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PHF21A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.84

Table S6785.  Gene #650: 'PHF21A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PHF21A MUTATED 3 1 3
PHF21A WILD-TYPE 59 72 72
'PHF21A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.075 (Fisher's exact test), Q value = 0.3

Table S6786.  Gene #650: 'PHF21A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PHF21A MUTATED 1 1 6
PHF21A WILD-TYPE 69 119 94
'PHF21A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.54

Table S6787.  Gene #650: 'PHF21A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PHF21A MUTATED 0 0 0 0 2 4 2 0 0
PHF21A WILD-TYPE 41 26 30 29 37 65 18 14 22
'PHF21A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 0.31

Table S6788.  Gene #650: 'PHF21A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PHF21A MUTATED 0 4 3 4
PHF21A WILD-TYPE 100 68 69 117
'PHF21A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00391 (Fisher's exact test), Q value = 0.056

Table S6789.  Gene #650: 'PHF21A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PHF21A MUTATED 0 0 6 2 3
PHF21A WILD-TYPE 59 75 68 117 35

Figure S1971.  Get High-res Image Gene #650: 'PHF21A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PHF21A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S6790.  Gene #650: 'PHF21A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PHF21A MUTATED 0 3 2 0 6
PHF21A WILD-TYPE 51 73 59 71 89
'PHF21A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0745 (Fisher's exact test), Q value = 0.3

Table S6791.  Gene #650: 'PHF21A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PHF21A MUTATED 0 2 0 1 1 1 2 3 1
PHF21A WILD-TYPE 69 46 39 15 52 19 19 35 49
'BMPR1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S6792.  Gene #651: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BMPR1A MUTATED 4 0 0 1 0
BMPR1A WILD-TYPE 28 18 46 26 23

Figure S1972.  Get High-res Image Gene #651: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BMPR1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.066 (Fisher's exact test), Q value = 0.28

Table S6793.  Gene #651: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BMPR1A MUTATED 4 1 0
BMPR1A WILD-TYPE 39 66 36
'BMPR1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.095

Table S6794.  Gene #651: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BMPR1A MUTATED 2 3 13
BMPR1A WILD-TYPE 40 170 134

Figure S1973.  Get High-res Image Gene #651: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BMPR1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.15

Table S6795.  Gene #651: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BMPR1A MUTATED 8 1 4
BMPR1A WILD-TYPE 54 72 71

Figure S1974.  Get High-res Image Gene #651: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BMPR1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.5

Table S6796.  Gene #651: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BMPR1A MUTATED 2 4 8
BMPR1A WILD-TYPE 68 116 92
'BMPR1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S6797.  Gene #651: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BMPR1A MUTATED 2 1 1 0 2 6 1 1 0
BMPR1A WILD-TYPE 39 25 29 29 37 63 19 13 22
'BMPR1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.96

Table S6798.  Gene #651: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BMPR1A MUTATED 3 5 4 6
BMPR1A WILD-TYPE 97 67 68 115
'BMPR1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00151 (Fisher's exact test), Q value = 0.032

Table S6799.  Gene #651: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BMPR1A MUTATED 1 3 8 1 5
BMPR1A WILD-TYPE 58 72 66 118 33

Figure S1975.  Get High-res Image Gene #651: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BMPR1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S6800.  Gene #651: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BMPR1A MUTATED 1 8 3 1 5
BMPR1A WILD-TYPE 50 68 58 70 90
'BMPR1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S6801.  Gene #651: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BMPR1A MUTATED 4 4 0 2 1 1 1 4 1
BMPR1A WILD-TYPE 65 44 39 14 52 19 20 34 49
'BMPR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S6802.  Gene #651: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BMPR1A MUTATED 1 0 1 0 1 1
BMPR1A WILD-TYPE 12 16 13 11 10 8
'BMPR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S6803.  Gene #651: 'BMPR1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BMPR1A MUTATED 0 0 0 0 1 1 1 1 0
BMPR1A WILD-TYPE 11 7 7 9 7 6 10 8 5
'C14ORF39 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S6804.  Gene #652: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C14ORF39 MUTATED 0 4 9
C14ORF39 WILD-TYPE 42 169 138
'C14ORF39 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S6805.  Gene #652: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C14ORF39 MUTATED 6 2 3
C14ORF39 WILD-TYPE 56 71 72
'C14ORF39 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S6806.  Gene #652: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C14ORF39 MUTATED 1 5 5
C14ORF39 WILD-TYPE 69 115 95
'C14ORF39 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S6807.  Gene #652: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C14ORF39 MUTATED 1 1 2 2 0 4 0 0 1
C14ORF39 WILD-TYPE 40 25 28 27 39 65 20 14 21
'C14ORF39 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S6808.  Gene #652: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C14ORF39 MUTATED 2 3 5 3
C14ORF39 WILD-TYPE 98 69 67 118
'C14ORF39 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S6809.  Gene #652: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C14ORF39 MUTATED 1 5 4 2 1
C14ORF39 WILD-TYPE 58 70 70 117 37
'C14ORF39 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S6810.  Gene #652: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C14ORF39 MUTATED 3 3 2 1 4
C14ORF39 WILD-TYPE 48 73 59 70 91
'C14ORF39 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S6811.  Gene #652: 'C14ORF39 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C14ORF39 MUTATED 2 4 0 1 1 2 0 1 2
C14ORF39 WILD-TYPE 67 44 39 15 52 18 21 37 48
'TAT MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00888 (Fisher's exact test), Q value = 0.088

Table S6812.  Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TAT MUTATED 4 0 0 0 0
TAT WILD-TYPE 28 18 46 27 23

Figure S1976.  Get High-res Image Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TAT MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 0.24

Table S6813.  Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TAT MUTATED 3 0 1
TAT WILD-TYPE 40 67 35
'TAT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0081

Table S6814.  Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TAT MUTATED 3 0 11
TAT WILD-TYPE 39 173 136

Figure S1977.  Get High-res Image Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TAT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S6815.  Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TAT MUTATED 4 1 5
TAT WILD-TYPE 58 72 70
'TAT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.56

Table S6816.  Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TAT MUTATED 2 2 6
TAT WILD-TYPE 68 118 94
'TAT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S6817.  Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TAT MUTATED 0 0 0 1 2 5 1 1 0
TAT WILD-TYPE 41 26 30 28 37 64 19 13 22
'TAT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S6818.  Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TAT MUTATED 1 5 4 4
TAT WILD-TYPE 99 67 68 117
'TAT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00273 (Fisher's exact test), Q value = 0.045

Table S6819.  Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TAT MUTATED 1 1 8 1 3
TAT WILD-TYPE 58 74 66 118 35

Figure S1978.  Get High-res Image Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TAT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.18

Table S6820.  Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TAT MUTATED 1 8 1 1 2
TAT WILD-TYPE 50 68 60 70 93

Figure S1979.  Get High-res Image Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TAT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S6821.  Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TAT MUTATED 2 3 1 2 2 1 0 2 0
TAT WILD-TYPE 67 45 38 14 51 19 21 36 50
'TAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00643 (Fisher's exact test), Q value = 0.075

Table S6822.  Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TAT MUTATED 0 0 0 0 3 0
TAT WILD-TYPE 13 16 14 11 8 9

Figure S1980.  Get High-res Image Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S6823.  Gene #653: 'TAT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TAT MUTATED 0 0 0 1 0 0 2 0 0
TAT WILD-TYPE 11 7 7 8 8 7 9 9 5
'FAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.08 (Fisher's exact test), Q value = 0.31

Table S6824.  Gene #654: 'FAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAS MUTATED 0 1 6
FAS WILD-TYPE 42 172 141
'FAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S6825.  Gene #654: 'FAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAS MUTATED 3 1 3
FAS WILD-TYPE 59 72 72
'FAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.25

Table S6826.  Gene #654: 'FAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAS MUTATED 0 1 5
FAS WILD-TYPE 70 119 95
'FAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 0.95

Table S6827.  Gene #654: 'FAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAS MUTATED 1 1 0 0 0 4 0 0 0
FAS WILD-TYPE 40 25 30 29 39 65 20 14 22
'FAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.16

Table S6828.  Gene #654: 'FAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAS MUTATED 1 4 2 0
FAS WILD-TYPE 99 68 70 121

Figure S1981.  Get High-res Image Gene #654: 'FAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S6829.  Gene #654: 'FAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAS MUTATED 2 3 2 0 0
FAS WILD-TYPE 57 72 72 119 38
'FAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S6830.  Gene #654: 'FAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAS MUTATED 1 4 1 0 1
FAS WILD-TYPE 50 72 60 71 94
'FAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.96

Table S6831.  Gene #654: 'FAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAS MUTATED 1 2 0 1 2 0 0 0 1
FAS WILD-TYPE 68 46 39 15 51 20 21 38 49
'TXNDC17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S6832.  Gene #655: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TXNDC17 MUTATED 0 2 3
TXNDC17 WILD-TYPE 42 171 144
'TXNDC17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S6833.  Gene #655: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TXNDC17 MUTATED 0 2 3
TXNDC17 WILD-TYPE 62 71 72
'TXNDC17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S6834.  Gene #655: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TXNDC17 MUTATED 0 3 1
TXNDC17 WILD-TYPE 70 117 99
'TXNDC17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S6835.  Gene #655: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TXNDC17 MUTATED 0 0 0 2 0 1 0 0 1
TXNDC17 WILD-TYPE 41 26 30 27 39 68 20 14 21
'TXNDC17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0768 (Fisher's exact test), Q value = 0.3

Table S6836.  Gene #655: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TXNDC17 MUTATED 1 3 1 0
TXNDC17 WILD-TYPE 99 69 71 121
'TXNDC17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S6837.  Gene #655: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TXNDC17 MUTATED 1 1 3 0 0
TXNDC17 WILD-TYPE 58 74 71 119 38
'TXNDC17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S6838.  Gene #655: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TXNDC17 MUTATED 1 4 0 0 0
TXNDC17 WILD-TYPE 50 72 61 71 95

Figure S1982.  Get High-res Image Gene #655: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TXNDC17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S6839.  Gene #655: 'TXNDC17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TXNDC17 MUTATED 2 1 1 1 0 0 0 0 0
TXNDC17 WILD-TYPE 67 47 38 15 53 20 21 38 50
'SMTN MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S6840.  Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SMTN MUTATED 0 0 14
SMTN WILD-TYPE 42 173 133

Figure S1983.  Get High-res Image Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SMTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00151 (Fisher's exact test), Q value = 0.032

Table S6841.  Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SMTN MUTATED 8 0 3
SMTN WILD-TYPE 54 73 72

Figure S1984.  Get High-res Image Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SMTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.17

Table S6842.  Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SMTN MUTATED 2 2 9
SMTN WILD-TYPE 68 118 91

Figure S1985.  Get High-res Image Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SMTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S6843.  Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SMTN MUTATED 0 1 1 1 2 7 1 0 0
SMTN WILD-TYPE 41 25 29 28 37 62 19 14 22
'SMTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00593 (Fisher's exact test), Q value = 0.073

Table S6844.  Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SMTN MUTATED 0 5 6 3
SMTN WILD-TYPE 100 67 66 118

Figure S1986.  Get High-res Image Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SMTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S6845.  Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SMTN MUTATED 0 0 11 1 2
SMTN WILD-TYPE 59 75 63 118 36

Figure S1987.  Get High-res Image Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S6846.  Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SMTN MUTATED 0 7 3 0 3
SMTN WILD-TYPE 51 69 58 71 92

Figure S1988.  Get High-res Image Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SMTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S6847.  Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SMTN MUTATED 3 4 0 1 2 1 0 2 0
SMTN WILD-TYPE 66 44 39 15 51 19 21 36 50
'SMTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S6848.  Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SMTN MUTATED 0 0 3 0 0 0
SMTN WILD-TYPE 13 16 11 11 11 9

Figure S1989.  Get High-res Image Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SMTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.99

Table S6849.  Gene #656: 'SMTN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SMTN MUTATED 0 0 0 0 1 1 1 0 0
SMTN WILD-TYPE 11 7 7 9 7 6 10 9 5
'STRADB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.19

Table S6850.  Gene #657: 'STRADB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STRADB MUTATED 0 0 5
STRADB WILD-TYPE 42 173 142

Figure S1990.  Get High-res Image Gene #657: 'STRADB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STRADB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S6851.  Gene #657: 'STRADB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STRADB MUTATED 2 0 3
STRADB WILD-TYPE 60 73 72
'STRADB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.11

Table S6852.  Gene #657: 'STRADB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STRADB MUTATED 3 0 0
STRADB WILD-TYPE 67 120 100

Figure S1991.  Get High-res Image Gene #657: 'STRADB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'STRADB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 0.93

Table S6853.  Gene #657: 'STRADB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STRADB MUTATED 0 0 0 0 2 1 0 0 0
STRADB WILD-TYPE 41 26 30 29 37 68 20 14 22
'STRADB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S6854.  Gene #657: 'STRADB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STRADB MUTATED 1 2 2 0
STRADB WILD-TYPE 99 70 70 121
'STRADB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S6855.  Gene #657: 'STRADB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STRADB MUTATED 0 1 4 0 0
STRADB WILD-TYPE 59 74 70 119 38

Figure S1992.  Get High-res Image Gene #657: 'STRADB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STRADB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S6856.  Gene #657: 'STRADB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STRADB MUTATED 0 3 1 0 1
STRADB WILD-TYPE 51 73 60 71 94
'STRADB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S6857.  Gene #657: 'STRADB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STRADB MUTATED 2 0 0 0 2 0 0 1 0
STRADB WILD-TYPE 67 48 39 16 51 20 21 37 50
'ACVR2A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S6858.  Gene #658: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ACVR2A MUTATED 3 0 1 1 0
ACVR2A WILD-TYPE 29 18 45 26 23
'ACVR2A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S6859.  Gene #658: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ACVR2A MUTATED 2 2 1
ACVR2A WILD-TYPE 41 65 35
'ACVR2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00608 (Fisher's exact test), Q value = 0.073

Table S6860.  Gene #658: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ACVR2A MUTATED 3 2 12
ACVR2A WILD-TYPE 39 171 135

Figure S1993.  Get High-res Image Gene #658: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ACVR2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0943 (Fisher's exact test), Q value = 0.33

Table S6861.  Gene #658: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ACVR2A MUTATED 3 1 7
ACVR2A WILD-TYPE 59 72 68
'ACVR2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S6862.  Gene #658: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ACVR2A MUTATED 1 9 5
ACVR2A WILD-TYPE 69 111 95
'ACVR2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S6863.  Gene #658: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ACVR2A MUTATED 2 2 2 3 3 2 0 1 0
ACVR2A WILD-TYPE 39 24 28 26 36 67 20 13 22
'ACVR2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S6864.  Gene #658: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ACVR2A MUTATED 1 6 4 6
ACVR2A WILD-TYPE 99 66 68 115
'ACVR2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S6865.  Gene #658: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ACVR2A MUTATED 2 1 7 5 2
ACVR2A WILD-TYPE 57 74 67 114 36
'ACVR2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S6866.  Gene #658: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ACVR2A MUTATED 1 5 2 3 6
ACVR2A WILD-TYPE 50 71 59 68 89
'ACVR2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S6867.  Gene #658: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ACVR2A MUTATED 4 2 0 2 2 2 0 3 2
ACVR2A WILD-TYPE 65 46 39 14 51 18 21 35 48
'ACVR2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.77

Table S6868.  Gene #658: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ACVR2A MUTATED 1 0 1 0 2 1
ACVR2A WILD-TYPE 12 16 13 11 9 8
'ACVR2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S6869.  Gene #658: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ACVR2A MUTATED 2 0 0 2 0 0 1 0 0
ACVR2A WILD-TYPE 9 7 7 7 8 7 10 9 5
'WT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0974 (Fisher's exact test), Q value = 0.34

Table S6870.  Gene #659: 'WT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
WT1 MUTATED 3 0 0 1 0
WT1 WILD-TYPE 29 18 46 26 23
'WT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S6871.  Gene #659: 'WT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
WT1 MUTATED 3 1 0
WT1 WILD-TYPE 40 66 36
'WT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S6872.  Gene #659: 'WT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WT1 MUTATED 3 10 13
WT1 WILD-TYPE 39 163 134
'WT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S6873.  Gene #659: 'WT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WT1 MUTATED 7 7 8
WT1 WILD-TYPE 55 66 67
'WT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0592 (Fisher's exact test), Q value = 0.26

Table S6874.  Gene #659: 'WT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WT1 MUTATED 1 12 7
WT1 WILD-TYPE 69 108 93
'WT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S6875.  Gene #659: 'WT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WT1 MUTATED 2 1 0 5 2 5 1 2 2
WT1 WILD-TYPE 39 25 30 24 37 64 19 12 20
'WT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S6876.  Gene #659: 'WT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WT1 MUTATED 8 7 7 4
WT1 WILD-TYPE 92 65 65 117
'WT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.14

Table S6877.  Gene #659: 'WT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WT1 MUTATED 5 9 8 2 2
WT1 WILD-TYPE 54 66 66 117 36

Figure S1994.  Get High-res Image Gene #659: 'WT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S6878.  Gene #659: 'WT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WT1 MUTATED 6 9 5 3 3
WT1 WILD-TYPE 45 67 56 68 92
'WT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.34

Table S6879.  Gene #659: 'WT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WT1 MUTATED 7 5 2 2 6 0 0 4 0
WT1 WILD-TYPE 62 43 37 14 47 20 21 34 50
'WT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S6880.  Gene #659: 'WT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
WT1 MUTATED 1 2 1 0 1 0
WT1 WILD-TYPE 12 14 13 11 10 9
'WT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S6881.  Gene #659: 'WT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
WT1 MUTATED 1 1 0 1 0 0 2 0 0
WT1 WILD-TYPE 10 6 7 8 8 7 9 9 5
'EFHC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6882.  Gene #660: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EFHC1 MUTATED 1 0 1 1 1
EFHC1 WILD-TYPE 31 18 45 26 22
'EFHC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S6883.  Gene #660: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EFHC1 MUTATED 1 1 2
EFHC1 WILD-TYPE 42 66 34
'EFHC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S6884.  Gene #660: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EFHC1 MUTATED 0 5 6
EFHC1 WILD-TYPE 42 168 141
'EFHC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.62

Table S6885.  Gene #660: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EFHC1 MUTATED 4 1 2
EFHC1 WILD-TYPE 58 72 73
'EFHC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.99

Table S6886.  Gene #660: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EFHC1 MUTATED 1 4 4
EFHC1 WILD-TYPE 69 116 96
'EFHC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.988 (Fisher's exact test), Q value = 1

Table S6887.  Gene #660: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EFHC1 MUTATED 1 1 1 1 1 4 0 0 0
EFHC1 WILD-TYPE 40 25 29 28 38 65 20 14 22
'EFHC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S6888.  Gene #660: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EFHC1 MUTATED 3 1 4 3
EFHC1 WILD-TYPE 97 71 68 118
'EFHC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 0.97

Table S6889.  Gene #660: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EFHC1 MUTATED 2 1 4 3 1
EFHC1 WILD-TYPE 57 74 70 116 37
'EFHC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S6890.  Gene #660: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EFHC1 MUTATED 1 5 1 2 2
EFHC1 WILD-TYPE 50 71 60 69 93
'EFHC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S6891.  Gene #660: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EFHC1 MUTATED 2 3 0 1 0 2 1 1 1
EFHC1 WILD-TYPE 67 45 39 15 53 18 20 37 49
'EFHC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S6892.  Gene #660: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EFHC1 MUTATED 0 1 1 0 1 0
EFHC1 WILD-TYPE 13 15 13 11 10 9
'EFHC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S6893.  Gene #660: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EFHC1 MUTATED 0 0 1 0 0 0 2 0 0
EFHC1 WILD-TYPE 11 7 6 9 8 7 9 9 5
'MTMR8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S6894.  Gene #661: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MTMR8 MUTATED 2 1 0 0 0
MTMR8 WILD-TYPE 30 17 46 27 23
'MTMR8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.038 (Fisher's exact test), Q value = 0.21

Table S6895.  Gene #661: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MTMR8 MUTATED 3 0 0
MTMR8 WILD-TYPE 40 67 36

Figure S1995.  Get High-res Image Gene #661: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MTMR8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S6896.  Gene #661: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MTMR8 MUTATED 0 5 6
MTMR8 WILD-TYPE 42 168 141
'MTMR8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S6897.  Gene #661: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MTMR8 MUTATED 4 2 2
MTMR8 WILD-TYPE 58 71 73
'MTMR8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S6898.  Gene #661: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MTMR8 MUTATED 1 3 5
MTMR8 WILD-TYPE 69 117 95
'MTMR8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S6899.  Gene #661: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MTMR8 MUTATED 0 1 1 1 3 3 0 0 0
MTMR8 WILD-TYPE 41 25 29 28 36 66 20 14 22
'MTMR8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S6900.  Gene #661: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MTMR8 MUTATED 5 2 1 3
MTMR8 WILD-TYPE 95 70 71 118
'MTMR8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S6901.  Gene #661: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MTMR8 MUTATED 4 2 2 1 2
MTMR8 WILD-TYPE 55 73 72 118 36
'MTMR8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.63

Table S6902.  Gene #661: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MTMR8 MUTATED 1 4 3 0 3
MTMR8 WILD-TYPE 50 72 58 71 92
'MTMR8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.073 (Fisher's exact test), Q value = 0.29

Table S6903.  Gene #661: 'MTMR8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MTMR8 MUTATED 5 3 0 0 0 0 0 3 0
MTMR8 WILD-TYPE 64 45 39 16 53 20 21 35 50
'ACTL6A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0996 (Fisher's exact test), Q value = 0.34

Table S6904.  Gene #662: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ACTL6A MUTATED 3 0 0 1 0
ACTL6A WILD-TYPE 29 18 46 26 23
'ACTL6A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00978 (Fisher's exact test), Q value = 0.093

Table S6905.  Gene #662: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ACTL6A MUTATED 4 0 0
ACTL6A WILD-TYPE 39 67 36

Figure S1996.  Get High-res Image Gene #662: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ACTL6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.19

Table S6906.  Gene #662: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ACTL6A MUTATED 0 0 5
ACTL6A WILD-TYPE 42 173 142

Figure S1997.  Get High-res Image Gene #662: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ACTL6A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.054 (Fisher's exact test), Q value = 0.25

Table S6907.  Gene #662: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ACTL6A MUTATED 0 1 5
ACTL6A WILD-TYPE 70 119 95
'ACTL6A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.89

Table S6908.  Gene #662: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ACTL6A MUTATED 0 0 0 0 2 3 1 0 0
ACTL6A WILD-TYPE 41 26 30 29 37 66 19 14 22
'ACTL6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S6909.  Gene #662: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ACTL6A MUTATED 0 0 2 4
ACTL6A WILD-TYPE 100 72 70 117
'ACTL6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.012

Table S6910.  Gene #662: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ACTL6A MUTATED 0 0 2 0 4
ACTL6A WILD-TYPE 59 75 72 119 34

Figure S1998.  Get High-res Image Gene #662: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ACTL6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S6911.  Gene #662: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ACTL6A MUTATED 0 2 0 0 3
ACTL6A WILD-TYPE 51 74 61 71 92
'ACTL6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S6912.  Gene #662: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ACTL6A MUTATED 1 1 0 0 0 0 0 3 0
ACTL6A WILD-TYPE 68 47 39 16 53 20 21 35 50
'FAM163B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S6913.  Gene #663: 'FAM163B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM163B MUTATED 0 1 3
FAM163B WILD-TYPE 42 172 144
'FAM163B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6914.  Gene #663: 'FAM163B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM163B MUTATED 1 1 1
FAM163B WILD-TYPE 61 72 74
'FAM163B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.92

Table S6915.  Gene #663: 'FAM163B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM163B MUTATED 0 1 2
FAM163B WILD-TYPE 70 119 98
'FAM163B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S6916.  Gene #663: 'FAM163B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM163B MUTATED 0 0 0 1 0 1 1 0 0
FAM163B WILD-TYPE 41 26 30 28 39 68 19 14 22
'FAM163B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6917.  Gene #663: 'FAM163B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM163B MUTATED 1 1 1 1
FAM163B WILD-TYPE 99 71 71 120
'FAM163B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S6918.  Gene #663: 'FAM163B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM163B MUTATED 0 1 2 1 0
FAM163B WILD-TYPE 59 74 72 118 38
'FAM163B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S6919.  Gene #663: 'FAM163B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM163B MUTATED 0 2 0 2 0
FAM163B WILD-TYPE 51 74 61 69 95
'FAM163B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S6920.  Gene #663: 'FAM163B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM163B MUTATED 1 1 0 1 0 0 0 0 1
FAM163B WILD-TYPE 68 47 39 15 53 20 21 38 49
'GPR22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 0.14

Table S6921.  Gene #664: 'GPR22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GPR22 MUTATED 0 1 8
GPR22 WILD-TYPE 42 172 139

Figure S1999.  Get High-res Image Gene #664: 'GPR22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPR22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S6922.  Gene #664: 'GPR22 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GPR22 MUTATED 3 1 3
GPR22 WILD-TYPE 59 72 72
'GPR22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00494 (Fisher's exact test), Q value = 0.066

Table S6923.  Gene #664: 'GPR22 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GPR22 MUTATED 2 0 7
GPR22 WILD-TYPE 68 120 93

Figure S2000.  Get High-res Image Gene #664: 'GPR22 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GPR22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S6924.  Gene #664: 'GPR22 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GPR22 MUTATED 1 0 0 0 2 6 0 0 0
GPR22 WILD-TYPE 40 26 30 29 37 63 20 14 22
'GPR22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S6925.  Gene #664: 'GPR22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GPR22 MUTATED 1 3 3 2
GPR22 WILD-TYPE 99 69 69 119
'GPR22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S6926.  Gene #664: 'GPR22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GPR22 MUTATED 1 1 5 0 2
GPR22 WILD-TYPE 58 74 69 119 36

Figure S2001.  Get High-res Image Gene #664: 'GPR22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GPR22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.62

Table S6927.  Gene #664: 'GPR22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GPR22 MUTATED 0 4 2 1 1
GPR22 WILD-TYPE 51 72 59 70 94
'GPR22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.61

Table S6928.  Gene #664: 'GPR22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GPR22 MUTATED 3 3 0 0 0 0 1 1 0
GPR22 WILD-TYPE 66 45 39 16 53 20 20 37 50
'MAPK9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6929.  Gene #665: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MAPK9 MUTATED 1 0 1 1 0
MAPK9 WILD-TYPE 31 18 45 26 23
'MAPK9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S6930.  Gene #665: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MAPK9 MUTATED 0 2 1
MAPK9 WILD-TYPE 43 65 35
'MAPK9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S6931.  Gene #665: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAPK9 MUTATED 1 3 6
MAPK9 WILD-TYPE 41 170 141
'MAPK9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S6932.  Gene #665: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAPK9 MUTATED 3 1 3
MAPK9 WILD-TYPE 59 72 72
'MAPK9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6933.  Gene #665: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAPK9 MUTATED 2 3 3
MAPK9 WILD-TYPE 68 117 97
'MAPK9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S6934.  Gene #665: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAPK9 MUTATED 0 0 2 1 0 3 1 1 0
MAPK9 WILD-TYPE 41 26 28 28 39 66 19 13 22
'MAPK9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.98

Table S6935.  Gene #665: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAPK9 MUTATED 3 2 3 2
MAPK9 WILD-TYPE 97 70 69 119
'MAPK9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S6936.  Gene #665: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAPK9 MUTATED 1 3 3 3 0
MAPK9 WILD-TYPE 58 72 71 116 38
'MAPK9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S6937.  Gene #665: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAPK9 MUTATED 1 4 1 3 1
MAPK9 WILD-TYPE 50 72 60 68 94
'MAPK9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S6938.  Gene #665: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAPK9 MUTATED 2 2 1 2 1 1 0 0 1
MAPK9 WILD-TYPE 67 46 38 14 52 19 21 38 49
'MAPK9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.15

Table S6939.  Gene #665: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAPK9 MUTATED 1 0 0 0 3 0
MAPK9 WILD-TYPE 12 16 14 11 8 9

Figure S2002.  Get High-res Image Gene #665: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MAPK9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S6940.  Gene #665: 'MAPK9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAPK9 MUTATED 0 0 0 2 1 0 1 0 0
MAPK9 WILD-TYPE 11 7 7 7 7 7 10 9 5
'APOB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00132 (Fisher's exact test), Q value = 0.03

Table S6941.  Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
APOB MUTATED 9 0 2 4 0
APOB WILD-TYPE 23 18 44 23 23

Figure S2003.  Get High-res Image Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'APOB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00459 (Fisher's exact test), Q value = 0.062

Table S6942.  Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
APOB MUTATED 10 4 1
APOB WILD-TYPE 33 63 35

Figure S2004.  Get High-res Image Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'APOB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00513 (Fisher's exact test), Q value = 0.067

Table S6943.  Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
APOB MUTATED 9 15 30
APOB WILD-TYPE 33 158 117

Figure S2005.  Get High-res Image Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'APOB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0537 (Fisher's exact test), Q value = 0.25

Table S6944.  Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
APOB MUTATED 15 7 16
APOB WILD-TYPE 47 66 59
'APOB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S6945.  Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
APOB MUTATED 8 21 18
APOB WILD-TYPE 62 99 82
'APOB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.65

Table S6946.  Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
APOB MUTATED 7 1 4 8 6 12 1 3 5
APOB WILD-TYPE 34 25 26 21 33 57 19 11 17
'APOB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0715 (Fisher's exact test), Q value = 0.29

Table S6947.  Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
APOB MUTATED 11 14 16 13
APOB WILD-TYPE 89 58 56 108
'APOB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0053

Table S6948.  Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
APOB MUTATED 13 9 16 5 11
APOB WILD-TYPE 46 66 58 114 27

Figure S2006.  Get High-res Image Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'APOB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.17

Table S6949.  Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
APOB MUTATED 9 15 12 3 13
APOB WILD-TYPE 42 61 49 68 82

Figure S2007.  Get High-res Image Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'APOB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S6950.  Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
APOB MUTATED 9 10 6 4 9 2 1 8 3
APOB WILD-TYPE 60 38 33 12 44 18 20 30 47
'APOB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.92

Table S6951.  Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
APOB MUTATED 1 5 2 1 1 1
APOB WILD-TYPE 12 11 12 10 10 8
'APOB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S6952.  Gene #666: 'APOB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
APOB MUTATED 4 0 1 1 1 1 2 0 1
APOB WILD-TYPE 7 7 6 8 7 6 9 9 4
'OR4D2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S6953.  Gene #667: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR4D2 MUTATED 0 1 3
OR4D2 WILD-TYPE 42 172 144
'OR4D2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6954.  Gene #667: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR4D2 MUTATED 1 1 2
OR4D2 WILD-TYPE 61 72 73
'OR4D2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S6955.  Gene #667: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR4D2 MUTATED 0 1 3
OR4D2 WILD-TYPE 70 119 97
'OR4D2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.85

Table S6956.  Gene #667: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR4D2 MUTATED 0 0 0 0 0 3 0 0 1
OR4D2 WILD-TYPE 41 26 30 29 39 66 20 14 21
'OR4D2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0449 (Fisher's exact test), Q value = 0.23

Table S6957.  Gene #667: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR4D2 MUTATED 0 2 2 0
OR4D2 WILD-TYPE 100 70 70 121

Figure S2008.  Get High-res Image Gene #667: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR4D2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0852 (Fisher's exact test), Q value = 0.32

Table S6958.  Gene #667: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR4D2 MUTATED 0 1 3 0 0
OR4D2 WILD-TYPE 59 74 71 119 38
'OR4D2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S6959.  Gene #667: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR4D2 MUTATED 1 3 0 0 0
OR4D2 WILD-TYPE 50 73 61 71 95
'OR4D2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0258 (Fisher's exact test), Q value = 0.17

Table S6960.  Gene #667: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR4D2 MUTATED 0 1 0 2 1 0 0 0 0
OR4D2 WILD-TYPE 69 47 39 14 52 20 21 38 50

Figure S2009.  Get High-res Image Gene #667: 'OR4D2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DSG4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.18

Table S6961.  Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DSG4 MUTATED 4 0 0 1 0
DSG4 WILD-TYPE 28 18 46 26 23

Figure S2010.  Get High-res Image Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DSG4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00249 (Fisher's exact test), Q value = 0.042

Table S6962.  Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DSG4 MUTATED 5 0 0
DSG4 WILD-TYPE 38 67 36

Figure S2011.  Get High-res Image Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DSG4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S6963.  Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DSG4 MUTATED 0 3 18
DSG4 WILD-TYPE 42 170 129

Figure S2012.  Get High-res Image Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DSG4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S6964.  Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DSG4 MUTATED 7 3 6
DSG4 WILD-TYPE 55 70 69
'DSG4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S6965.  Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DSG4 MUTATED 4 5 9
DSG4 WILD-TYPE 66 115 91
'DSG4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0557 (Fisher's exact test), Q value = 0.25

Table S6966.  Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DSG4 MUTATED 1 3 0 0 1 10 1 1 1
DSG4 WILD-TYPE 40 23 30 29 38 59 19 13 21
'DSG4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.93

Table S6967.  Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DSG4 MUTATED 4 6 5 6
DSG4 WILD-TYPE 96 66 67 115
'DSG4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00148 (Fisher's exact test), Q value = 0.032

Table S6968.  Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DSG4 MUTATED 0 6 9 2 4
DSG4 WILD-TYPE 59 69 65 117 34

Figure S2013.  Get High-res Image Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DSG4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00784 (Fisher's exact test), Q value = 0.083

Table S6969.  Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DSG4 MUTATED 2 11 1 1 6
DSG4 WILD-TYPE 49 65 60 70 89

Figure S2014.  Get High-res Image Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DSG4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S6970.  Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DSG4 MUTATED 6 2 3 2 1 1 1 4 1
DSG4 WILD-TYPE 63 46 36 14 52 19 20 34 49
'DSG4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 0.33

Table S6971.  Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DSG4 MUTATED 2 1 0 0 3 0
DSG4 WILD-TYPE 11 15 14 11 8 9
'DSG4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S6972.  Gene #668: 'DSG4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DSG4 MUTATED 1 0 0 0 1 1 1 2 0
DSG4 WILD-TYPE 10 7 7 9 7 6 10 7 5
'KIAA0319L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0586 (Fisher's exact test), Q value = 0.26

Table S6973.  Gene #669: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIAA0319L MUTATED 4 0 0 1 1
KIAA0319L WILD-TYPE 28 18 46 26 22
'KIAA0319L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S6974.  Gene #669: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIAA0319L MUTATED 4 1 1
KIAA0319L WILD-TYPE 39 66 35
'KIAA0319L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00168 (Fisher's exact test), Q value = 0.034

Table S6975.  Gene #669: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA0319L MUTATED 1 3 15
KIAA0319L WILD-TYPE 41 170 132

Figure S2015.  Get High-res Image Gene #669: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0319L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0578 (Fisher's exact test), Q value = 0.26

Table S6976.  Gene #669: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA0319L MUTATED 4 1 8
KIAA0319L WILD-TYPE 58 72 67
'KIAA0319L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S6977.  Gene #669: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA0319L MUTATED 4 4 8
KIAA0319L WILD-TYPE 66 116 92
'KIAA0319L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S6978.  Gene #669: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA0319L MUTATED 2 1 1 2 1 7 1 1 0
KIAA0319L WILD-TYPE 39 25 29 27 38 62 19 13 22
'KIAA0319L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S6979.  Gene #669: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA0319L MUTATED 2 7 4 6
KIAA0319L WILD-TYPE 98 65 68 115
'KIAA0319L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S6980.  Gene #669: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA0319L MUTATED 2 3 7 3 4
KIAA0319L WILD-TYPE 57 72 67 116 34
'KIAA0319L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0452 (Fisher's exact test), Q value = 0.23

Table S6981.  Gene #669: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA0319L MUTATED 1 8 1 1 7
KIAA0319L WILD-TYPE 50 68 60 70 88

Figure S2016.  Get High-res Image Gene #669: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIAA0319L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S6982.  Gene #669: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA0319L MUTATED 2 3 1 4 1 1 1 4 1
KIAA0319L WILD-TYPE 67 45 38 12 52 19 20 34 49

Figure S2017.  Get High-res Image Gene #669: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA0319L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0056 (Fisher's exact test), Q value = 0.071

Table S6983.  Gene #669: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIAA0319L MUTATED 0 0 0 0 3 0
KIAA0319L WILD-TYPE 13 16 14 11 8 9

Figure S2018.  Get High-res Image Gene #669: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KIAA0319L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S6984.  Gene #669: 'KIAA0319L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIAA0319L MUTATED 0 0 0 1 1 1 0 0 0
KIAA0319L WILD-TYPE 11 7 7 8 7 6 11 9 5
'TXNDC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S6985.  Gene #670: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TXNDC6 MUTATED 1 3 4
TXNDC6 WILD-TYPE 41 170 143
'TXNDC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S6986.  Gene #670: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TXNDC6 MUTATED 3 1 3
TXNDC6 WILD-TYPE 59 72 72
'TXNDC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S6987.  Gene #670: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TXNDC6 MUTATED 1 3 3
TXNDC6 WILD-TYPE 69 117 97
'TXNDC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.95

Table S6988.  Gene #670: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TXNDC6 MUTATED 1 1 0 1 0 2 1 1 0
TXNDC6 WILD-TYPE 40 25 30 28 39 67 19 13 22
'TXNDC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.93

Table S6989.  Gene #670: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TXNDC6 MUTATED 1 3 1 3
TXNDC6 WILD-TYPE 99 69 71 118
'TXNDC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S6990.  Gene #670: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TXNDC6 MUTATED 1 0 3 3 1
TXNDC6 WILD-TYPE 58 75 71 116 37
'TXNDC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S6991.  Gene #670: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TXNDC6 MUTATED 2 3 0 1 2
TXNDC6 WILD-TYPE 49 73 61 70 93
'TXNDC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S6992.  Gene #670: 'TXNDC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TXNDC6 MUTATED 0 1 1 2 1 1 0 1 1
TXNDC6 WILD-TYPE 69 47 38 14 52 19 21 37 49
'PFN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S6993.  Gene #671: 'PFN4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PFN4 MUTATED 0 1 5
PFN4 WILD-TYPE 42 172 142
'PFN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0823 (Fisher's exact test), Q value = 0.31

Table S6994.  Gene #671: 'PFN4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PFN4 MUTATED 1 0 4
PFN4 WILD-TYPE 61 73 71
'PFN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6995.  Gene #671: 'PFN4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PFN4 MUTATED 1 2 1
PFN4 WILD-TYPE 69 118 99
'PFN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0605 (Fisher's exact test), Q value = 0.26

Table S6996.  Gene #671: 'PFN4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PFN4 MUTATED 0 0 0 1 1 0 2 0 0
PFN4 WILD-TYPE 41 26 30 28 38 69 18 14 22
'PFN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.18

Table S6997.  Gene #671: 'PFN4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PFN4 MUTATED 0 4 1 1
PFN4 WILD-TYPE 100 68 71 120

Figure S2019.  Get High-res Image Gene #671: 'PFN4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PFN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.13

Table S6998.  Gene #671: 'PFN4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PFN4 MUTATED 1 0 4 0 1
PFN4 WILD-TYPE 58 75 70 119 37

Figure S2020.  Get High-res Image Gene #671: 'PFN4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PFN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0865 (Fisher's exact test), Q value = 0.32

Table S6999.  Gene #671: 'PFN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PFN4 MUTATED 0 4 0 0 2
PFN4 WILD-TYPE 51 72 61 71 93
'PFN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S7000.  Gene #671: 'PFN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PFN4 MUTATED 0 2 0 1 1 0 0 2 0
PFN4 WILD-TYPE 69 46 39 15 52 20 21 36 50
'NOS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.21

Table S7001.  Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NOS3 MUTATED 2 4 12
NOS3 WILD-TYPE 40 169 135

Figure S2021.  Get High-res Image Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NOS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00688 (Fisher's exact test), Q value = 0.077

Table S7002.  Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NOS3 MUTATED 4 1 11
NOS3 WILD-TYPE 58 72 64

Figure S2022.  Get High-res Image Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NOS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S7003.  Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NOS3 MUTATED 1 7 6
NOS3 WILD-TYPE 69 113 94
'NOS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S7004.  Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NOS3 MUTATED 1 2 1 3 0 5 2 0 0
NOS3 WILD-TYPE 40 24 29 26 39 64 18 14 22
'NOS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00209 (Fisher's exact test), Q value = 0.039

Table S7005.  Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NOS3 MUTATED 3 9 5 1
NOS3 WILD-TYPE 97 63 67 120

Figure S2023.  Get High-res Image Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NOS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0019 (Fisher's exact test), Q value = 0.037

Table S7006.  Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NOS3 MUTATED 1 3 11 2 1
NOS3 WILD-TYPE 58 72 63 117 37

Figure S2024.  Get High-res Image Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S7007.  Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NOS3 MUTATED 1 13 1 1 2
NOS3 WILD-TYPE 50 63 60 70 93

Figure S2025.  Get High-res Image Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0343 (Fisher's exact test), Q value = 0.2

Table S7008.  Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NOS3 MUTATED 4 4 1 4 3 0 0 2 0
NOS3 WILD-TYPE 65 44 38 12 50 20 21 36 50

Figure S2026.  Get High-res Image Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.012

Table S7009.  Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NOS3 MUTATED 0 0 1 0 5 0
NOS3 WILD-TYPE 13 16 13 11 6 9

Figure S2027.  Get High-res Image Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S7010.  Gene #672: 'NOS3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NOS3 MUTATED 0 0 0 2 1 2 1 0 0
NOS3 WILD-TYPE 11 7 7 7 7 5 10 9 5
'MUC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S7011.  Gene #673: 'MUC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MUC7 MUTATED 1 2 6
MUC7 WILD-TYPE 41 171 141
'MUC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S7012.  Gene #673: 'MUC7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MUC7 MUTATED 5 1 2
MUC7 WILD-TYPE 57 72 73
'MUC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S7013.  Gene #673: 'MUC7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MUC7 MUTATED 2 5 2
MUC7 WILD-TYPE 68 115 98
'MUC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0616 (Fisher's exact test), Q value = 0.27

Table S7014.  Gene #673: 'MUC7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MUC7 MUTATED 0 0 1 1 1 2 1 3 0
MUC7 WILD-TYPE 41 26 29 28 38 67 19 11 22
'MUC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0471 (Fisher's exact test), Q value = 0.23

Table S7015.  Gene #673: 'MUC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MUC7 MUTATED 1 5 2 1
MUC7 WILD-TYPE 99 67 70 120

Figure S2028.  Get High-res Image Gene #673: 'MUC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MUC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.15

Table S7016.  Gene #673: 'MUC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MUC7 MUTATED 2 1 5 0 1
MUC7 WILD-TYPE 57 74 69 119 37

Figure S2029.  Get High-res Image Gene #673: 'MUC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MUC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S7017.  Gene #673: 'MUC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MUC7 MUTATED 1 4 2 0 2
MUC7 WILD-TYPE 50 72 59 71 93
'MUC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S7018.  Gene #673: 'MUC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MUC7 MUTATED 2 2 0 2 0 1 0 1 1
MUC7 WILD-TYPE 67 46 39 14 53 19 21 37 49
'MUC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S7019.  Gene #673: 'MUC7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MUC7 MUTATED 2 1 1 1 1 0
MUC7 WILD-TYPE 11 15 13 10 10 9
'MUC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S7020.  Gene #673: 'MUC7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MUC7 MUTATED 1 0 1 2 1 0 1 0 0
MUC7 WILD-TYPE 10 7 6 7 7 7 10 9 5
'BCHE MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 0.24

Table S7021.  Gene #674: 'BCHE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BCHE MUTATED 5 0 1 1 0
BCHE WILD-TYPE 27 18 45 26 23
'BCHE MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0433 (Fisher's exact test), Q value = 0.22

Table S7022.  Gene #674: 'BCHE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BCHE MUTATED 5 1 1
BCHE WILD-TYPE 38 66 35

Figure S2030.  Get High-res Image Gene #674: 'BCHE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BCHE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 0.31

Table S7023.  Gene #674: 'BCHE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BCHE MUTATED 1 8 15
BCHE WILD-TYPE 41 165 132
'BCHE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S7024.  Gene #674: 'BCHE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BCHE MUTATED 7 4 6
BCHE WILD-TYPE 55 69 69
'BCHE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S7025.  Gene #674: 'BCHE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BCHE MUTATED 3 7 10
BCHE WILD-TYPE 67 113 90
'BCHE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S7026.  Gene #674: 'BCHE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BCHE MUTATED 4 4 1 1 3 5 1 0 1
BCHE WILD-TYPE 37 22 29 28 36 64 19 14 21
'BCHE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S7027.  Gene #674: 'BCHE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BCHE MUTATED 4 6 8 7
BCHE WILD-TYPE 96 66 64 114
'BCHE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 0.21

Table S7028.  Gene #674: 'BCHE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BCHE MUTATED 4 4 9 3 5
BCHE WILD-TYPE 55 71 65 116 33

Figure S2031.  Get High-res Image Gene #674: 'BCHE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BCHE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S7029.  Gene #674: 'BCHE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BCHE MUTATED 2 8 4 2 8
BCHE WILD-TYPE 49 68 57 69 87
'BCHE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0967 (Fisher's exact test), Q value = 0.34

Table S7030.  Gene #674: 'BCHE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BCHE MUTATED 2 7 2 2 4 1 0 5 1
BCHE WILD-TYPE 67 41 37 14 49 19 21 33 49
'BCHE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S7031.  Gene #674: 'BCHE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BCHE MUTATED 1 0 1 2 1 2
BCHE WILD-TYPE 12 16 13 9 10 7
'BCHE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S7032.  Gene #674: 'BCHE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BCHE MUTATED 1 0 2 1 1 0 0 2 0
BCHE WILD-TYPE 10 7 5 8 7 7 11 7 5
'SLC27A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S7033.  Gene #675: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC27A2 MUTATED 0 1 5
SLC27A2 WILD-TYPE 42 172 142
'SLC27A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0731 (Fisher's exact test), Q value = 0.29

Table S7034.  Gene #675: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC27A2 MUTATED 3 1 0
SLC27A2 WILD-TYPE 59 72 75
'SLC27A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.79

Table S7035.  Gene #675: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC27A2 MUTATED 1 1 3
SLC27A2 WILD-TYPE 69 119 97
'SLC27A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S7036.  Gene #675: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC27A2 MUTATED 0 2 0 0 0 3 0 0 0
SLC27A2 WILD-TYPE 41 24 30 29 39 66 20 14 22
'SLC27A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S7037.  Gene #675: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC27A2 MUTATED 1 1 1 3
SLC27A2 WILD-TYPE 99 71 71 118
'SLC27A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7038.  Gene #675: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC27A2 MUTATED 1 1 1 3 0
SLC27A2 WILD-TYPE 58 74 73 116 38
'SLC27A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S7039.  Gene #675: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC27A2 MUTATED 0 2 1 1 2
SLC27A2 WILD-TYPE 51 74 60 70 93
'SLC27A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7040.  Gene #675: 'SLC27A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC27A2 MUTATED 1 1 1 0 1 0 0 1 1
SLC27A2 WILD-TYPE 68 47 38 16 52 20 21 37 49
'KRT19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 0.33

Table S7041.  Gene #676: 'KRT19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KRT19 MUTATED 1 0 3
KRT19 WILD-TYPE 41 173 144
'KRT19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.98

Table S7042.  Gene #676: 'KRT19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KRT19 MUTATED 0 2 2
KRT19 WILD-TYPE 70 118 98
'KRT19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S7043.  Gene #676: 'KRT19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KRT19 MUTATED 0 0 1 1 0 2 0 0 0
KRT19 WILD-TYPE 41 26 29 28 39 67 20 14 22
'KRT19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S7044.  Gene #676: 'KRT19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KRT19 MUTATED 0 2 0 2
KRT19 WILD-TYPE 100 70 72 119
'KRT19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S7045.  Gene #676: 'KRT19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KRT19 MUTATED 0 0 2 2 0
KRT19 WILD-TYPE 59 75 72 117 38
'KRT19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S7046.  Gene #676: 'KRT19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KRT19 MUTATED 0 2 0 0 2
KRT19 WILD-TYPE 51 74 61 71 93
'KRT19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00068 (Fisher's exact test), Q value = 0.019

Table S7047.  Gene #676: 'KRT19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KRT19 MUTATED 0 0 0 2 0 1 1 0 0
KRT19 WILD-TYPE 69 48 39 14 53 19 20 38 50

Figure S2032.  Get High-res Image Gene #676: 'KRT19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LASS3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0348 (Fisher's exact test), Q value = 0.2

Table S7048.  Gene #677: 'LASS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LASS3 MUTATED 3 0 0 3 0
LASS3 WILD-TYPE 29 18 46 24 23

Figure S2033.  Get High-res Image Gene #677: 'LASS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LASS3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S7049.  Gene #677: 'LASS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LASS3 MUTATED 3 3 0
LASS3 WILD-TYPE 40 64 36
'LASS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S7050.  Gene #677: 'LASS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LASS3 MUTATED 2 4 8
LASS3 WILD-TYPE 40 169 139
'LASS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S7051.  Gene #677: 'LASS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LASS3 MUTATED 2 2 4
LASS3 WILD-TYPE 60 71 71
'LASS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.94

Table S7052.  Gene #677: 'LASS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LASS3 MUTATED 4 6 3
LASS3 WILD-TYPE 66 114 97
'LASS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S7053.  Gene #677: 'LASS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LASS3 MUTATED 1 1 3 1 4 2 0 1 0
LASS3 WILD-TYPE 40 25 27 28 35 67 20 13 22
'LASS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.99

Table S7054.  Gene #677: 'LASS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LASS3 MUTATED 4 3 1 6
LASS3 WILD-TYPE 96 69 71 115
'LASS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S7055.  Gene #677: 'LASS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LASS3 MUTATED 2 4 1 4 3
LASS3 WILD-TYPE 57 71 73 115 35
'LASS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S7056.  Gene #677: 'LASS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LASS3 MUTATED 1 4 2 0 6
LASS3 WILD-TYPE 50 72 59 71 89
'LASS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S7057.  Gene #677: 'LASS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LASS3 MUTATED 3 1 2 0 1 1 1 3 1
LASS3 WILD-TYPE 66 47 37 16 52 19 20 35 49
'GAB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 0.2

Table S7058.  Gene #678: 'GAB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GAB1 MUTATED 3 0 0 3 0
GAB1 WILD-TYPE 29 18 46 24 23

Figure S2034.  Get High-res Image Gene #678: 'GAB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GAB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S7059.  Gene #678: 'GAB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GAB1 MUTATED 4 1 1
GAB1 WILD-TYPE 39 66 35
'GAB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.19

Table S7060.  Gene #678: 'GAB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GAB1 MUTATED 0 4 11
GAB1 WILD-TYPE 42 169 136

Figure S2035.  Get High-res Image Gene #678: 'GAB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GAB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S7061.  Gene #678: 'GAB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GAB1 MUTATED 2 2 5
GAB1 WILD-TYPE 60 71 70
'GAB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7062.  Gene #678: 'GAB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GAB1 MUTATED 3 6 5
GAB1 WILD-TYPE 67 114 95
'GAB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S7063.  Gene #678: 'GAB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GAB1 MUTATED 1 2 2 3 2 3 1 0 0
GAB1 WILD-TYPE 40 24 28 26 37 66 19 14 22
'GAB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.47

Table S7064.  Gene #678: 'GAB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GAB1 MUTATED 1 5 4 5
GAB1 WILD-TYPE 99 67 68 116
'GAB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0554 (Fisher's exact test), Q value = 0.25

Table S7065.  Gene #678: 'GAB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GAB1 MUTATED 4 1 4 2 4
GAB1 WILD-TYPE 55 74 70 117 34
'GAB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S7066.  Gene #678: 'GAB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GAB1 MUTATED 1 4 2 2 5
GAB1 WILD-TYPE 50 72 59 69 90
'GAB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0414 (Fisher's exact test), Q value = 0.21

Table S7067.  Gene #678: 'GAB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GAB1 MUTATED 5 1 0 2 1 1 0 4 0
GAB1 WILD-TYPE 64 47 39 14 52 19 21 34 50

Figure S2036.  Get High-res Image Gene #678: 'GAB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S7068.  Gene #678: 'GAB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GAB1 MUTATED 0 0 1 0 1 2
GAB1 WILD-TYPE 13 16 13 11 10 7
'GAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S7069.  Gene #678: 'GAB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GAB1 MUTATED 3 0 0 1 0 0 0 0 0
GAB1 WILD-TYPE 8 7 7 8 8 7 11 9 5
'ZNF518B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7070.  Gene #679: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF518B MUTATED 1 5 4
ZNF518B WILD-TYPE 41 168 143
'ZNF518B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S7071.  Gene #679: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF518B MUTATED 4 4 2
ZNF518B WILD-TYPE 58 69 73
'ZNF518B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S7072.  Gene #679: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF518B MUTATED 0 2 5
ZNF518B WILD-TYPE 70 118 95
'ZNF518B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S7073.  Gene #679: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF518B MUTATED 1 1 0 0 0 4 0 1 0
ZNF518B WILD-TYPE 40 25 30 29 39 65 20 13 22
'ZNF518B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 0.25

Table S7074.  Gene #679: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF518B MUTATED 4 3 3 0
ZNF518B WILD-TYPE 96 69 69 121
'ZNF518B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0316 (Fisher's exact test), Q value = 0.19

Table S7075.  Gene #679: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF518B MUTATED 3 4 3 0 0
ZNF518B WILD-TYPE 56 71 71 119 38

Figure S2037.  Get High-res Image Gene #679: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF518B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 0.31

Table S7076.  Gene #679: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF518B MUTATED 3 3 3 1 0
ZNF518B WILD-TYPE 48 73 58 70 95
'ZNF518B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0616 (Fisher's exact test), Q value = 0.27

Table S7077.  Gene #679: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF518B MUTATED 4 1 2 2 0 1 0 0 0
ZNF518B WILD-TYPE 65 47 37 14 53 19 21 38 50
'ZNF518B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S7078.  Gene #679: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF518B MUTATED 1 0 0 0 2 1
ZNF518B WILD-TYPE 12 16 14 11 9 8
'ZNF518B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S7079.  Gene #679: 'ZNF518B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF518B MUTATED 1 0 0 2 0 1 0 0 0
ZNF518B WILD-TYPE 10 7 7 7 8 6 11 9 5
'C14ORF159 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7080.  Gene #680: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C14ORF159 MUTATED 1 4 4
C14ORF159 WILD-TYPE 41 169 143
'C14ORF159 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.97

Table S7081.  Gene #680: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C14ORF159 MUTATED 2 4 2
C14ORF159 WILD-TYPE 60 69 73
'C14ORF159 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S7082.  Gene #680: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C14ORF159 MUTATED 0 2 5
C14ORF159 WILD-TYPE 70 118 95
'C14ORF159 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S7083.  Gene #680: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C14ORF159 MUTATED 0 0 2 0 0 5 0 0 0
C14ORF159 WILD-TYPE 41 26 28 29 39 64 20 14 22
'C14ORF159 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.55

Table S7084.  Gene #680: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C14ORF159 MUTATED 5 1 2 1
C14ORF159 WILD-TYPE 95 71 70 120
'C14ORF159 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0494 (Fisher's exact test), Q value = 0.24

Table S7085.  Gene #680: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C14ORF159 MUTATED 0 5 3 1 0
C14ORF159 WILD-TYPE 59 70 71 118 38

Figure S2038.  Get High-res Image Gene #680: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C14ORF159 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0609 (Fisher's exact test), Q value = 0.26

Table S7086.  Gene #680: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C14ORF159 MUTATED 4 3 0 1 1
C14ORF159 WILD-TYPE 47 73 61 70 94
'C14ORF159 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.35

Table S7087.  Gene #680: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C14ORF159 MUTATED 2 2 2 1 0 2 0 0 0
C14ORF159 WILD-TYPE 67 46 37 15 53 18 21 38 50
'C14ORF159 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S7088.  Gene #680: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C14ORF159 MUTATED 2 0 0 0 1 0
C14ORF159 WILD-TYPE 11 16 14 11 10 9
'C14ORF159 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S7089.  Gene #680: 'C14ORF159 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C14ORF159 MUTATED 0 0 0 0 0 0 1 1 1
C14ORF159 WILD-TYPE 11 7 7 9 8 7 10 8 4
'EFEMP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S7090.  Gene #681: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EFEMP1 MUTATED 2 0 1 0 0
EFEMP1 WILD-TYPE 30 18 45 27 23
'EFEMP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S7091.  Gene #681: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EFEMP1 MUTATED 2 1 0
EFEMP1 WILD-TYPE 41 66 36
'EFEMP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S7092.  Gene #681: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EFEMP1 MUTATED 0 9 11
EFEMP1 WILD-TYPE 42 164 136
'EFEMP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.46

Table S7093.  Gene #681: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EFEMP1 MUTATED 8 3 6
EFEMP1 WILD-TYPE 54 70 69
'EFEMP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0528 (Fisher's exact test), Q value = 0.25

Table S7094.  Gene #681: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EFEMP1 MUTATED 2 6 12
EFEMP1 WILD-TYPE 68 114 88
'EFEMP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S7095.  Gene #681: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EFEMP1 MUTATED 1 0 2 2 0 11 0 1 3
EFEMP1 WILD-TYPE 40 26 28 27 39 58 20 13 19

Figure S2039.  Get High-res Image Gene #681: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'EFEMP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0635 (Fisher's exact test), Q value = 0.27

Table S7096.  Gene #681: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EFEMP1 MUTATED 4 3 9 4
EFEMP1 WILD-TYPE 96 69 63 117
'EFEMP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S7097.  Gene #681: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EFEMP1 MUTATED 4 6 6 3 1
EFEMP1 WILD-TYPE 55 69 68 116 37
'EFEMP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S7098.  Gene #681: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EFEMP1 MUTATED 6 6 3 2 3
EFEMP1 WILD-TYPE 45 70 58 69 92
'EFEMP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S7099.  Gene #681: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EFEMP1 MUTATED 5 5 1 1 4 1 1 1 1
EFEMP1 WILD-TYPE 64 43 38 15 49 19 20 37 49
'EFEMP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.54

Table S7100.  Gene #681: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EFEMP1 MUTATED 2 2 0 0 3 1
EFEMP1 WILD-TYPE 11 14 14 11 8 8
'EFEMP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S7101.  Gene #681: 'EFEMP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EFEMP1 MUTATED 2 1 0 0 0 0 3 1 1
EFEMP1 WILD-TYPE 9 6 7 9 8 7 8 8 4
'PDP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0633 (Fisher's exact test), Q value = 0.27

Table S7102.  Gene #682: 'PDP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PDP2 MUTATED 1 0 4
PDP2 WILD-TYPE 41 173 143
'PDP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S7103.  Gene #682: 'PDP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PDP2 MUTATED 1 1 3
PDP2 WILD-TYPE 61 72 72
'PDP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S7104.  Gene #682: 'PDP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PDP2 MUTATED 1 1 2
PDP2 WILD-TYPE 69 119 98
'PDP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.77

Table S7105.  Gene #682: 'PDP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PDP2 MUTATED 1 1 0 0 1 0 0 0 1
PDP2 WILD-TYPE 40 25 30 29 38 69 20 14 21
'PDP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.14

Table S7106.  Gene #682: 'PDP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PDP2 MUTATED 0 2 3 0
PDP2 WILD-TYPE 100 70 69 121

Figure S2040.  Get High-res Image Gene #682: 'PDP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PDP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0354 (Fisher's exact test), Q value = 0.2

Table S7107.  Gene #682: 'PDP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PDP2 MUTATED 2 0 3 0 0
PDP2 WILD-TYPE 57 75 71 119 38

Figure S2041.  Get High-res Image Gene #682: 'PDP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PDP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.2

Table S7108.  Gene #682: 'PDP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PDP2 MUTATED 0 2 3 0 0
PDP2 WILD-TYPE 51 74 58 71 95

Figure S2042.  Get High-res Image Gene #682: 'PDP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PDP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S7109.  Gene #682: 'PDP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PDP2 MUTATED 1 3 0 1 0 0 0 0 0
PDP2 WILD-TYPE 68 45 39 15 53 20 21 38 50
'ENSA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S7110.  Gene #683: 'ENSA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ENSA MUTATED 0 2 3
ENSA WILD-TYPE 42 171 144
'ENSA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S7111.  Gene #683: 'ENSA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ENSA MUTATED 2 1 2
ENSA WILD-TYPE 60 72 73
'ENSA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7112.  Gene #683: 'ENSA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ENSA MUTATED 1 2 1
ENSA WILD-TYPE 69 118 99
'ENSA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S7113.  Gene #683: 'ENSA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ENSA MUTATED 0 0 0 1 1 1 0 1 0
ENSA WILD-TYPE 41 26 30 28 38 68 20 13 22
'ENSA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S7114.  Gene #683: 'ENSA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ENSA MUTATED 2 2 1 0
ENSA WILD-TYPE 98 70 71 121
'ENSA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0696 (Fisher's exact test), Q value = 0.28

Table S7115.  Gene #683: 'ENSA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ENSA MUTATED 0 2 3 0 0
ENSA WILD-TYPE 59 73 71 119 38
'ENSA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S7116.  Gene #683: 'ENSA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ENSA MUTATED 2 2 0 0 1
ENSA WILD-TYPE 49 74 61 71 94
'ENSA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S7117.  Gene #683: 'ENSA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ENSA MUTATED 2 1 0 1 0 0 0 1 0
ENSA WILD-TYPE 67 47 39 15 53 20 21 37 50
'ENSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S7118.  Gene #683: 'ENSA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ENSA MUTATED 1 0 0 0 2 0
ENSA WILD-TYPE 12 16 14 11 9 9
'ENSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S7119.  Gene #683: 'ENSA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ENSA MUTATED 0 0 0 1 0 0 1 0 1
ENSA WILD-TYPE 11 7 7 8 8 7 10 9 4
'C20ORF177 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.94

Table S7120.  Gene #684: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C20ORF177 MUTATED 1 3 5
C20ORF177 WILD-TYPE 41 170 142
'C20ORF177 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S7121.  Gene #684: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C20ORF177 MUTATED 4 1 2
C20ORF177 WILD-TYPE 58 72 73
'C20ORF177 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.17

Table S7122.  Gene #684: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C20ORF177 MUTATED 0 2 7
C20ORF177 WILD-TYPE 70 118 93

Figure S2043.  Get High-res Image Gene #684: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C20ORF177 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S7123.  Gene #684: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C20ORF177 MUTATED 2 0 1 0 0 3 2 0 1
C20ORF177 WILD-TYPE 39 26 29 29 39 66 18 14 21
'C20ORF177 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S7124.  Gene #684: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C20ORF177 MUTATED 1 2 4 2
C20ORF177 WILD-TYPE 99 70 68 119
'C20ORF177 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0344 (Fisher's exact test), Q value = 0.2

Table S7125.  Gene #684: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C20ORF177 MUTATED 2 1 4 0 2
C20ORF177 WILD-TYPE 57 74 70 119 36

Figure S2044.  Get High-res Image Gene #684: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C20ORF177 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S7126.  Gene #684: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C20ORF177 MUTATED 2 4 1 0 1
C20ORF177 WILD-TYPE 49 72 60 71 94
'C20ORF177 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.22

Table S7127.  Gene #684: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C20ORF177 MUTATED 0 4 0 1 1 1 0 1 0
C20ORF177 WILD-TYPE 69 44 39 15 52 19 21 37 50

Figure S2045.  Get High-res Image Gene #684: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C20ORF177 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S7128.  Gene #684: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C20ORF177 MUTATED 1 1 0 1 1 1
C20ORF177 WILD-TYPE 12 15 14 10 10 8
'C20ORF177 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S7129.  Gene #684: 'C20ORF177 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C20ORF177 MUTATED 0 0 1 0 0 1 2 0 1
C20ORF177 WILD-TYPE 11 7 6 9 8 6 9 9 4
'POMGNT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.21

Table S7130.  Gene #685: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
POMGNT1 MUTATED 0 1 7
POMGNT1 WILD-TYPE 42 172 140

Figure S2046.  Get High-res Image Gene #685: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'POMGNT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S7131.  Gene #685: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
POMGNT1 MUTATED 3 1 2
POMGNT1 WILD-TYPE 59 72 73
'POMGNT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S7132.  Gene #685: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
POMGNT1 MUTATED 0 2 5
POMGNT1 WILD-TYPE 70 118 95
'POMGNT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.65

Table S7133.  Gene #685: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
POMGNT1 MUTATED 0 0 0 0 1 5 1 0 0
POMGNT1 WILD-TYPE 41 26 30 29 38 64 19 14 22
'POMGNT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S7134.  Gene #685: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
POMGNT1 MUTATED 1 3 2 2
POMGNT1 WILD-TYPE 99 69 70 119
'POMGNT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0308 (Fisher's exact test), Q value = 0.18

Table S7135.  Gene #685: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
POMGNT1 MUTATED 1 1 4 0 2
POMGNT1 WILD-TYPE 58 74 70 119 36

Figure S2047.  Get High-res Image Gene #685: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'POMGNT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 0.29

Table S7136.  Gene #685: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
POMGNT1 MUTATED 0 5 1 0 2
POMGNT1 WILD-TYPE 51 71 60 71 93
'POMGNT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00616 (Fisher's exact test), Q value = 0.074

Table S7137.  Gene #685: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
POMGNT1 MUTATED 1 2 0 3 0 0 0 2 0
POMGNT1 WILD-TYPE 68 46 39 13 53 20 21 36 50

Figure S2048.  Get High-res Image Gene #685: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SMG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S7138.  Gene #686: 'SMG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SMG1 MUTATED 2 0 0 4 0
SMG1 WILD-TYPE 30 18 46 23 23

Figure S2049.  Get High-res Image Gene #686: 'SMG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SMG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.087 (Fisher's exact test), Q value = 0.32

Table S7139.  Gene #686: 'SMG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SMG1 MUTATED 4 2 0
SMG1 WILD-TYPE 39 65 36
'SMG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.19

Table S7140.  Gene #686: 'SMG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SMG1 MUTATED 4 6 15
SMG1 WILD-TYPE 38 167 132

Figure S2050.  Get High-res Image Gene #686: 'SMG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SMG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0688 (Fisher's exact test), Q value = 0.28

Table S7141.  Gene #686: 'SMG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SMG1 MUTATED 8 2 8
SMG1 WILD-TYPE 54 71 67
'SMG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.91

Table S7142.  Gene #686: 'SMG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SMG1 MUTATED 3 10 8
SMG1 WILD-TYPE 67 110 92
'SMG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.84

Table S7143.  Gene #686: 'SMG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SMG1 MUTATED 1 2 4 1 5 5 0 1 2
SMG1 WILD-TYPE 40 24 26 28 34 64 20 13 20
'SMG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.93

Table S7144.  Gene #686: 'SMG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SMG1 MUTATED 7 7 5 6
SMG1 WILD-TYPE 93 65 67 115
'SMG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0953 (Fisher's exact test), Q value = 0.34

Table S7145.  Gene #686: 'SMG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SMG1 MUTATED 4 7 6 3 5
SMG1 WILD-TYPE 55 68 68 116 33
'SMG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S7146.  Gene #686: 'SMG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SMG1 MUTATED 3 8 4 2 6
SMG1 WILD-TYPE 48 68 57 69 89
'SMG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S7147.  Gene #686: 'SMG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SMG1 MUTATED 4 3 3 2 3 2 1 5 0
SMG1 WILD-TYPE 65 45 36 14 50 18 20 33 50
'SMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.18

Table S7148.  Gene #686: 'SMG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SMG1 MUTATED 0 0 0 1 3 1
SMG1 WILD-TYPE 13 16 14 10 8 8

Figure S2051.  Get High-res Image Gene #686: 'SMG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S7149.  Gene #686: 'SMG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SMG1 MUTATED 0 0 0 1 0 1 2 1 0
SMG1 WILD-TYPE 11 7 7 8 8 6 9 8 5
'HMCN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.012

Table S7150.  Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HMCN1 MUTATED 13 1 2 4 2
HMCN1 WILD-TYPE 19 17 44 23 21

Figure S2052.  Get High-res Image Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HMCN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.01

Table S7151.  Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HMCN1 MUTATED 15 4 3
HMCN1 WILD-TYPE 28 63 33

Figure S2053.  Get High-res Image Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HMCN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S7152.  Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HMCN1 MUTATED 4 20 47
HMCN1 WILD-TYPE 38 153 100

Figure S2054.  Get High-res Image Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HMCN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0717 (Fisher's exact test), Q value = 0.29

Table S7153.  Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HMCN1 MUTATED 19 11 20
HMCN1 WILD-TYPE 43 62 55
'HMCN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0096

Table S7154.  Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HMCN1 MUTATED 7 21 35
HMCN1 WILD-TYPE 63 99 65

Figure S2055.  Get High-res Image Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'HMCN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S7155.  Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HMCN1 MUTATED 7 5 5 6 6 23 7 2 2
HMCN1 WILD-TYPE 34 21 25 23 33 46 13 12 20
'HMCN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00529 (Fisher's exact test), Q value = 0.068

Table S7156.  Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HMCN1 MUTATED 10 19 21 22
HMCN1 WILD-TYPE 90 53 51 99

Figure S2056.  Get High-res Image Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HMCN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S7157.  Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HMCN1 MUTATED 14 9 25 11 13
HMCN1 WILD-TYPE 45 66 49 108 25

Figure S2057.  Get High-res Image Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HMCN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0053

Table S7158.  Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HMCN1 MUTATED 8 28 11 4 17
HMCN1 WILD-TYPE 43 48 50 67 78

Figure S2058.  Get High-res Image Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HMCN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.37

Table S7159.  Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HMCN1 MUTATED 13 14 5 7 9 4 3 8 5
HMCN1 WILD-TYPE 56 34 34 9 44 16 18 30 45
'HMCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S7160.  Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HMCN1 MUTATED 1 1 2 4 4 2
HMCN1 WILD-TYPE 12 15 12 7 7 7
'HMCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S7161.  Gene #687: 'HMCN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HMCN1 MUTATED 2 1 2 0 1 2 5 0 1
HMCN1 WILD-TYPE 9 6 5 9 7 5 6 9 4
'CHUK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S7162.  Gene #688: 'CHUK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CHUK MUTATED 2 0 0 1 0
CHUK WILD-TYPE 30 18 46 26 23
'CHUK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.79

Table S7163.  Gene #688: 'CHUK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CHUK MUTATED 2 1 0
CHUK WILD-TYPE 41 66 36
'CHUK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.11

Table S7164.  Gene #688: 'CHUK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CHUK MUTATED 5 4 11
CHUK WILD-TYPE 37 169 136

Figure S2059.  Get High-res Image Gene #688: 'CHUK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CHUK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.12

Table S7165.  Gene #688: 'CHUK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CHUK MUTATED 8 1 8
CHUK WILD-TYPE 54 72 67

Figure S2060.  Get High-res Image Gene #688: 'CHUK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CHUK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S7166.  Gene #688: 'CHUK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CHUK MUTATED 2 10 8
CHUK WILD-TYPE 68 110 92
'CHUK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S7167.  Gene #688: 'CHUK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CHUK MUTATED 5 1 1 1 0 4 5 2 1
CHUK WILD-TYPE 36 25 29 28 39 65 15 12 21

Figure S2061.  Get High-res Image Gene #688: 'CHUK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CHUK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S7168.  Gene #688: 'CHUK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CHUK MUTATED 5 6 6 4
CHUK WILD-TYPE 95 66 66 117
'CHUK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S7169.  Gene #688: 'CHUK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CHUK MUTATED 4 5 8 3 1
CHUK WILD-TYPE 55 70 66 116 37
'CHUK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S7170.  Gene #688: 'CHUK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CHUK MUTATED 6 6 2 2 4
CHUK WILD-TYPE 45 70 59 69 91
'CHUK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S7171.  Gene #688: 'CHUK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CHUK MUTATED 3 6 1 2 3 3 0 1 1
CHUK WILD-TYPE 66 42 38 14 50 17 21 37 49
'CHUK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S7172.  Gene #688: 'CHUK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CHUK MUTATED 1 3 1 0 2 0
CHUK WILD-TYPE 12 13 13 11 9 9
'CHUK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S7173.  Gene #688: 'CHUK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CHUK MUTATED 1 0 1 1 0 2 1 1 0
CHUK WILD-TYPE 10 7 6 8 8 5 10 8 5
'MYH3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00792 (Fisher's exact test), Q value = 0.084

Table S7174.  Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MYH3 MUTATED 5 0 0 1 0
MYH3 WILD-TYPE 27 18 46 26 23

Figure S2062.  Get High-res Image Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MYH3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00684 (Fisher's exact test), Q value = 0.077

Table S7175.  Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MYH3 MUTATED 5 0 1
MYH3 WILD-TYPE 38 67 35

Figure S2063.  Get High-res Image Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MYH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.098

Table S7176.  Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MYH3 MUTATED 5 8 20
MYH3 WILD-TYPE 37 165 127

Figure S2064.  Get High-res Image Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MYH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S7177.  Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MYH3 MUTATED 9 5 13
MYH3 WILD-TYPE 53 68 62
'MYH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00349 (Fisher's exact test), Q value = 0.052

Table S7178.  Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MYH3 MUTATED 2 7 17
MYH3 WILD-TYPE 68 113 83

Figure S2065.  Get High-res Image Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MYH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0712 (Fisher's exact test), Q value = 0.29

Table S7179.  Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MYH3 MUTATED 3 2 2 1 1 14 0 1 2
MYH3 WILD-TYPE 38 24 28 28 38 55 20 13 20
'MYH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S7180.  Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MYH3 MUTATED 7 11 8 7
MYH3 WILD-TYPE 93 61 64 114
'MYH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S7181.  Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MYH3 MUTATED 3 11 12 1 6
MYH3 WILD-TYPE 56 64 62 118 32

Figure S2066.  Get High-res Image Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S7182.  Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MYH3 MUTATED 7 13 4 2 6
MYH3 WILD-TYPE 44 63 57 69 89

Figure S2067.  Get High-res Image Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MYH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.67

Table S7183.  Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MYH3 MUTATED 10 5 3 1 3 3 0 5 2
MYH3 WILD-TYPE 59 43 36 15 50 17 21 33 48
'MYH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S7184.  Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MYH3 MUTATED 3 1 3 0 2 0
MYH3 WILD-TYPE 10 15 11 11 9 9
'MYH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S7185.  Gene #689: 'MYH3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MYH3 MUTATED 1 0 0 2 2 1 1 1 1
MYH3 WILD-TYPE 10 7 7 7 6 6 10 8 4
'ING2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.1

Table S7186.  Gene #690: 'ING2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ING2 MUTATED 0 0 6
ING2 WILD-TYPE 42 173 141

Figure S2068.  Get High-res Image Gene #690: 'ING2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ING2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S7187.  Gene #690: 'ING2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ING2 MUTATED 2 0 4
ING2 WILD-TYPE 60 73 71
'ING2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S7188.  Gene #690: 'ING2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ING2 MUTATED 1 1 3
ING2 WILD-TYPE 69 119 97
'ING2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S7189.  Gene #690: 'ING2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ING2 MUTATED 1 0 0 0 0 3 0 1 0
ING2 WILD-TYPE 40 26 30 29 39 66 20 13 22
'ING2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0046 (Fisher's exact test), Q value = 0.062

Table S7190.  Gene #690: 'ING2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ING2 MUTATED 0 4 2 0
ING2 WILD-TYPE 100 68 70 121

Figure S2069.  Get High-res Image Gene #690: 'ING2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ING2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00503 (Fisher's exact test), Q value = 0.066

Table S7191.  Gene #690: 'ING2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ING2 MUTATED 0 1 5 0 0
ING2 WILD-TYPE 59 74 69 119 38

Figure S2070.  Get High-res Image Gene #690: 'ING2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ING2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S7192.  Gene #690: 'ING2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ING2 MUTATED 1 3 1 0 1
ING2 WILD-TYPE 50 73 60 71 94
'ING2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S7193.  Gene #690: 'ING2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ING2 MUTATED 1 2 0 1 0 1 0 0 1
ING2 WILD-TYPE 68 46 39 15 53 19 21 38 49
'VAV3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.043 (Fisher's exact test), Q value = 0.22

Table S7194.  Gene #691: 'VAV3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
VAV3 MUTATED 4 1 0 1 0
VAV3 WILD-TYPE 28 17 46 26 23

Figure S2071.  Get High-res Image Gene #691: 'VAV3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'VAV3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S7195.  Gene #691: 'VAV3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
VAV3 MUTATED 3 1 2
VAV3 WILD-TYPE 40 66 34
'VAV3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00715 (Fisher's exact test), Q value = 0.079

Table S7196.  Gene #691: 'VAV3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
VAV3 MUTATED 2 5 17
VAV3 WILD-TYPE 40 168 130

Figure S2072.  Get High-res Image Gene #691: 'VAV3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VAV3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S7197.  Gene #691: 'VAV3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
VAV3 MUTATED 7 3 7
VAV3 WILD-TYPE 55 70 68
'VAV3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S7198.  Gene #691: 'VAV3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
VAV3 MUTATED 2 5 13
VAV3 WILD-TYPE 68 115 87

Figure S2073.  Get High-res Image Gene #691: 'VAV3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'VAV3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S7199.  Gene #691: 'VAV3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
VAV3 MUTATED 3 0 3 0 2 9 1 1 1
VAV3 WILD-TYPE 38 26 27 29 37 60 19 13 21
'VAV3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.17

Table S7200.  Gene #691: 'VAV3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
VAV3 MUTATED 4 11 3 6
VAV3 WILD-TYPE 96 61 69 115

Figure S2074.  Get High-res Image Gene #691: 'VAV3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'VAV3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0955 (Fisher's exact test), Q value = 0.34

Table S7201.  Gene #691: 'VAV3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
VAV3 MUTATED 3 4 10 4 3
VAV3 WILD-TYPE 56 71 64 115 35
'VAV3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.54

Table S7202.  Gene #691: 'VAV3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
VAV3 MUTATED 1 9 5 3 6
VAV3 WILD-TYPE 50 67 56 68 89
'VAV3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.063 (Fisher's exact test), Q value = 0.27

Table S7203.  Gene #691: 'VAV3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
VAV3 MUTATED 6 5 0 3 2 3 2 2 1
VAV3 WILD-TYPE 63 43 39 13 51 17 19 36 49
'VAV3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S7204.  Gene #691: 'VAV3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
VAV3 MUTATED 1 0 2 0 1 0
VAV3 WILD-TYPE 12 16 12 11 10 9
'VAV3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S7205.  Gene #691: 'VAV3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
VAV3 MUTATED 1 0 1 0 1 0 1 0 0
VAV3 WILD-TYPE 10 7 6 9 7 7 10 9 5
'UIMC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S7206.  Gene #692: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UIMC1 MUTATED 0 2 4
UIMC1 WILD-TYPE 42 171 143
'UIMC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.78

Table S7207.  Gene #692: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UIMC1 MUTATED 3 1 1
UIMC1 WILD-TYPE 59 72 74
'UIMC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0847 (Fisher's exact test), Q value = 0.32

Table S7208.  Gene #692: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UIMC1 MUTATED 2 0 3
UIMC1 WILD-TYPE 68 120 97
'UIMC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.92

Table S7209.  Gene #692: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UIMC1 MUTATED 1 1 0 0 0 2 0 1 0
UIMC1 WILD-TYPE 40 25 30 29 39 67 20 13 22
'UIMC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S7210.  Gene #692: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UIMC1 MUTATED 2 1 3 0
UIMC1 WILD-TYPE 98 71 69 121
'UIMC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0878 (Fisher's exact test), Q value = 0.32

Table S7211.  Gene #692: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UIMC1 MUTATED 2 1 3 0 0
UIMC1 WILD-TYPE 57 74 71 119 38
'UIMC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S7212.  Gene #692: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UIMC1 MUTATED 1 3 1 0 1
UIMC1 WILD-TYPE 50 73 60 71 94
'UIMC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S7213.  Gene #692: 'UIMC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UIMC1 MUTATED 0 2 0 0 3 0 1 0 0
UIMC1 WILD-TYPE 69 46 39 16 50 20 20 38 50
'LAMB4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00869 (Fisher's exact test), Q value = 0.088

Table S7214.  Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LAMB4 MUTATED 6 0 1 4 0
LAMB4 WILD-TYPE 26 18 45 23 23

Figure S2075.  Get High-res Image Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LAMB4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0346 (Fisher's exact test), Q value = 0.2

Table S7215.  Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LAMB4 MUTATED 7 2 2
LAMB4 WILD-TYPE 36 65 34

Figure S2076.  Get High-res Image Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LAMB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S7216.  Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LAMB4 MUTATED 2 9 14
LAMB4 WILD-TYPE 40 164 133
'LAMB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.23

Table S7217.  Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LAMB4 MUTATED 9 3 3
LAMB4 WILD-TYPE 53 70 72

Figure S2077.  Get High-res Image Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LAMB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.17

Table S7218.  Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LAMB4 MUTATED 5 4 13
LAMB4 WILD-TYPE 65 116 87

Figure S2078.  Get High-res Image Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LAMB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.54

Table S7219.  Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LAMB4 MUTATED 4 1 0 0 6 7 1 1 2
LAMB4 WILD-TYPE 37 25 30 29 33 62 19 13 20
'LAMB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S7220.  Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LAMB4 MUTATED 5 6 5 10
LAMB4 WILD-TYPE 95 66 67 111
'LAMB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00767 (Fisher's exact test), Q value = 0.082

Table S7221.  Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LAMB4 MUTATED 5 5 5 3 8
LAMB4 WILD-TYPE 54 70 69 116 30

Figure S2079.  Get High-res Image Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LAMB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S7222.  Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LAMB4 MUTATED 1 7 5 3 9
LAMB4 WILD-TYPE 50 69 56 68 86
'LAMB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S7223.  Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LAMB4 MUTATED 5 6 2 0 2 0 1 7 2
LAMB4 WILD-TYPE 64 42 37 16 51 20 20 31 48
'LAMB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S7224.  Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LAMB4 MUTATED 0 2 2 1 1 1
LAMB4 WILD-TYPE 13 14 12 10 10 8
'LAMB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S7225.  Gene #693: 'LAMB4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LAMB4 MUTATED 1 1 1 0 1 0 2 1 0
LAMB4 WILD-TYPE 10 6 6 9 7 7 9 8 5
'MOV10L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0423 (Fisher's exact test), Q value = 0.22

Table S7226.  Gene #694: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MOV10L1 MUTATED 4 1 0 1 0
MOV10L1 WILD-TYPE 28 17 46 26 23

Figure S2080.  Get High-res Image Gene #694: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MOV10L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S7227.  Gene #694: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MOV10L1 MUTATED 5 1 0
MOV10L1 WILD-TYPE 38 66 36

Figure S2081.  Get High-res Image Gene #694: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MOV10L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0917 (Fisher's exact test), Q value = 0.33

Table S7228.  Gene #694: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MOV10L1 MUTATED 0 5 10
MOV10L1 WILD-TYPE 42 168 137
'MOV10L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S7229.  Gene #694: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MOV10L1 MUTATED 2 4 4
MOV10L1 WILD-TYPE 60 69 71
'MOV10L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S7230.  Gene #694: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MOV10L1 MUTATED 0 4 9
MOV10L1 WILD-TYPE 70 116 91

Figure S2082.  Get High-res Image Gene #694: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MOV10L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S7231.  Gene #694: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MOV10L1 MUTATED 1 0 0 1 2 7 1 1 0
MOV10L1 WILD-TYPE 40 26 30 28 37 62 19 13 22
'MOV10L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S7232.  Gene #694: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MOV10L1 MUTATED 3 3 3 6
MOV10L1 WILD-TYPE 97 69 69 115
'MOV10L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0884 (Fisher's exact test), Q value = 0.32

Table S7233.  Gene #694: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MOV10L1 MUTATED 1 5 3 2 4
MOV10L1 WILD-TYPE 58 70 71 117 34
'MOV10L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S7234.  Gene #694: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MOV10L1 MUTATED 3 5 0 1 5
MOV10L1 WILD-TYPE 48 71 61 70 90
'MOV10L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S7235.  Gene #694: 'MOV10L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MOV10L1 MUTATED 4 1 0 1 1 2 1 3 1
MOV10L1 WILD-TYPE 65 47 39 15 52 18 20 35 49
'CTBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.1

Table S7236.  Gene #695: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CTBP2 MUTATED 0 0 6
CTBP2 WILD-TYPE 42 173 141

Figure S2083.  Get High-res Image Gene #695: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S7237.  Gene #695: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CTBP2 MUTATED 2 0 4
CTBP2 WILD-TYPE 60 73 71
'CTBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7238.  Gene #695: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CTBP2 MUTATED 1 2 2
CTBP2 WILD-TYPE 69 118 98
'CTBP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S7239.  Gene #695: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CTBP2 MUTATED 0 0 0 2 1 2 0 0 0
CTBP2 WILD-TYPE 41 26 30 27 38 67 20 14 22
'CTBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00467 (Fisher's exact test), Q value = 0.063

Table S7240.  Gene #695: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CTBP2 MUTATED 0 4 2 0
CTBP2 WILD-TYPE 100 68 70 121

Figure S2084.  Get High-res Image Gene #695: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00368 (Fisher's exact test), Q value = 0.054

Table S7241.  Gene #695: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CTBP2 MUTATED 1 0 5 0 0
CTBP2 WILD-TYPE 58 75 69 119 38

Figure S2085.  Get High-res Image Gene #695: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S7242.  Gene #695: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CTBP2 MUTATED 0 4 2 0 0
CTBP2 WILD-TYPE 51 72 59 71 95

Figure S2086.  Get High-res Image Gene #695: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CTBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S7243.  Gene #695: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CTBP2 MUTATED 1 1 0 2 2 0 0 0 0
CTBP2 WILD-TYPE 68 47 39 14 51 20 21 38 50
'TM9SF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.16

Table S7244.  Gene #696: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TM9SF2 MUTATED 1 1 8
TM9SF2 WILD-TYPE 41 172 139

Figure S2087.  Get High-res Image Gene #696: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TM9SF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.53

Table S7245.  Gene #696: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TM9SF2 MUTATED 2 1 5
TM9SF2 WILD-TYPE 60 72 70
'TM9SF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S7246.  Gene #696: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TM9SF2 MUTATED 0 6 2
TM9SF2 WILD-TYPE 70 114 98
'TM9SF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S7247.  Gene #696: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TM9SF2 MUTATED 0 2 1 2 0 2 1 0 0
TM9SF2 WILD-TYPE 41 24 29 27 39 67 19 14 22
'TM9SF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S7248.  Gene #696: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TM9SF2 MUTATED 1 4 2 3
TM9SF2 WILD-TYPE 99 68 70 118
'TM9SF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0492 (Fisher's exact test), Q value = 0.24

Table S7249.  Gene #696: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TM9SF2 MUTATED 0 2 5 1 2
TM9SF2 WILD-TYPE 59 73 69 118 36

Figure S2088.  Get High-res Image Gene #696: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TM9SF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S7250.  Gene #696: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TM9SF2 MUTATED 1 5 1 0 2
TM9SF2 WILD-TYPE 50 71 60 71 93
'TM9SF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S7251.  Gene #696: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TM9SF2 MUTATED 3 0 0 1 3 0 0 1 1
TM9SF2 WILD-TYPE 66 48 39 15 50 20 21 37 49
'TM9SF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 0.33

Table S7252.  Gene #696: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TM9SF2 MUTATED 0 0 2 0 2 0
TM9SF2 WILD-TYPE 13 16 12 11 9 9
'TM9SF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S7253.  Gene #696: 'TM9SF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TM9SF2 MUTATED 0 0 1 1 1 0 1 0 0
TM9SF2 WILD-TYPE 11 7 6 8 7 7 10 9 5
'CCDC88A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00515 (Fisher's exact test), Q value = 0.067

Table S7254.  Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CCDC88A MUTATED 7 0 1 2 0
CCDC88A WILD-TYPE 25 18 45 25 23

Figure S2089.  Get High-res Image Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CCDC88A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S7255.  Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CCDC88A MUTATED 6 3 1
CCDC88A WILD-TYPE 37 64 35
'CCDC88A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0098

Table S7256.  Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCDC88A MUTATED 2 5 23
CCDC88A WILD-TYPE 40 168 124

Figure S2090.  Get High-res Image Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC88A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.2

Table S7257.  Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCDC88A MUTATED 8 2 10
CCDC88A WILD-TYPE 54 71 65

Figure S2091.  Get High-res Image Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CCDC88A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S7258.  Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCDC88A MUTATED 2 12 8
CCDC88A WILD-TYPE 68 108 92
'CCDC88A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S7259.  Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCDC88A MUTATED 1 2 3 4 3 7 0 0 2
CCDC88A WILD-TYPE 40 24 27 25 36 62 20 14 20
'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S7260.  Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCDC88A MUTATED 3 9 6 11
CCDC88A WILD-TYPE 97 63 66 110
'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00422 (Fisher's exact test), Q value = 0.059

Table S7261.  Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCDC88A MUTATED 5 1 11 6 6
CCDC88A WILD-TYPE 54 74 63 113 32

Figure S2092.  Get High-res Image Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S7262.  Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCDC88A MUTATED 2 9 4 4 11
CCDC88A WILD-TYPE 49 67 57 67 84
'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.47

Table S7263.  Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCDC88A MUTATED 4 3 3 3 4 4 0 6 3
CCDC88A WILD-TYPE 65 45 36 13 49 16 21 32 47
'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 0.12

Table S7264.  Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CCDC88A MUTATED 1 0 3 0 4 0
CCDC88A WILD-TYPE 12 16 11 11 7 9

Figure S2093.  Get High-res Image Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S7265.  Gene #697: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CCDC88A MUTATED 0 0 1 2 0 1 3 0 1
CCDC88A WILD-TYPE 11 7 6 7 8 6 8 9 4
'ART5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.21

Table S7266.  Gene #698: 'ART5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ART5 MUTATED 1 1 7
ART5 WILD-TYPE 41 172 140

Figure S2094.  Get High-res Image Gene #698: 'ART5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ART5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0771 (Fisher's exact test), Q value = 0.3

Table S7267.  Gene #698: 'ART5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ART5 MUTATED 4 0 4
ART5 WILD-TYPE 58 73 71
'ART5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.6

Table S7268.  Gene #698: 'ART5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ART5 MUTATED 0 4 4
ART5 WILD-TYPE 70 116 96
'ART5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S7269.  Gene #698: 'ART5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ART5 MUTATED 0 1 0 1 1 4 1 0 0
ART5 WILD-TYPE 41 25 30 28 38 65 19 14 22
'ART5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S7270.  Gene #698: 'ART5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ART5 MUTATED 0 5 2 2
ART5 WILD-TYPE 100 67 70 119

Figure S2095.  Get High-res Image Gene #698: 'ART5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ART5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0737 (Fisher's exact test), Q value = 0.29

Table S7271.  Gene #698: 'ART5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ART5 MUTATED 0 2 5 1 1
ART5 WILD-TYPE 59 73 69 118 37
'ART5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S7272.  Gene #698: 'ART5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ART5 MUTATED 1 4 2 0 2
ART5 WILD-TYPE 50 72 59 71 93
'ART5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0526 (Fisher's exact test), Q value = 0.25

Table S7273.  Gene #698: 'ART5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ART5 MUTATED 0 1 0 2 4 0 0 1 1
ART5 WILD-TYPE 69 47 39 14 49 20 21 37 49
'ART5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S7274.  Gene #698: 'ART5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ART5 MUTATED 0 0 1 0 2 0
ART5 WILD-TYPE 13 16 13 11 9 9
'ART5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S7275.  Gene #698: 'ART5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ART5 MUTATED 0 0 0 2 1 0 0 0 0
ART5 WILD-TYPE 11 7 7 7 7 7 11 9 5
'ASPG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0812 (Fisher's exact test), Q value = 0.31

Table S7276.  Gene #699: 'ASPG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ASPG MUTATED 0 1 6
ASPG WILD-TYPE 42 172 141
'ASPG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S7277.  Gene #699: 'ASPG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ASPG MUTATED 3 1 2
ASPG WILD-TYPE 59 72 73
'ASPG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S7278.  Gene #699: 'ASPG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ASPG MUTATED 0 1 4
ASPG WILD-TYPE 70 119 96
'ASPG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S7279.  Gene #699: 'ASPG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ASPG MUTATED 0 0 0 1 0 3 1 0 0
ASPG WILD-TYPE 41 26 30 28 39 66 19 14 22
'ASPG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S7280.  Gene #699: 'ASPG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ASPG MUTATED 1 3 2 1
ASPG WILD-TYPE 99 69 70 120
'ASPG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0294 (Fisher's exact test), Q value = 0.18

Table S7281.  Gene #699: 'ASPG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ASPG MUTATED 0 2 4 0 1
ASPG WILD-TYPE 59 73 70 119 37

Figure S2096.  Get High-res Image Gene #699: 'ASPG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ASPG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S7282.  Gene #699: 'ASPG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ASPG MUTATED 1 4 0 0 2
ASPG WILD-TYPE 50 72 61 71 93
'ASPG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S7283.  Gene #699: 'ASPG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ASPG MUTATED 1 3 0 1 0 0 1 0 1
ASPG WILD-TYPE 68 45 39 15 53 20 20 38 49
'PLEKHB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7284.  Gene #700: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PLEKHB2 MUTATED 0 3 3
PLEKHB2 WILD-TYPE 42 170 144
'PLEKHB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S7285.  Gene #700: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PLEKHB2 MUTATED 2 2 1
PLEKHB2 WILD-TYPE 60 71 74
'PLEKHB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S7286.  Gene #700: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PLEKHB2 MUTATED 0 2 1
PLEKHB2 WILD-TYPE 70 118 99
'PLEKHB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.95

Table S7287.  Gene #700: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PLEKHB2 MUTATED 0 1 0 1 0 1 0 0 0
PLEKHB2 WILD-TYPE 41 25 30 28 39 68 20 14 22
'PLEKHB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S7288.  Gene #700: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PLEKHB2 MUTATED 3 0 2 1
PLEKHB2 WILD-TYPE 97 72 70 120
'PLEKHB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0782 (Fisher's exact test), Q value = 0.3

Table S7289.  Gene #700: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PLEKHB2 MUTATED 0 3 2 0 1
PLEKHB2 WILD-TYPE 59 72 72 119 37
'PLEKHB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S7290.  Gene #700: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PLEKHB2 MUTATED 2 2 1 0 1
PLEKHB2 WILD-TYPE 49 74 60 71 94
'PLEKHB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S7291.  Gene #700: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PLEKHB2 MUTATED 0 1 0 0 3 1 0 1 0
PLEKHB2 WILD-TYPE 69 47 39 16 50 19 21 37 50
'TMTC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7292.  Gene #701: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TMTC4 MUTATED 1 0 1 1 0
TMTC4 WILD-TYPE 31 18 45 26 23
'TMTC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S7293.  Gene #701: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TMTC4 MUTATED 2 0 1
TMTC4 WILD-TYPE 41 67 35
'TMTC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.92

Table S7294.  Gene #701: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMTC4 MUTATED 1 5 7
TMTC4 WILD-TYPE 41 168 140
'TMTC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S7295.  Gene #701: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TMTC4 MUTATED 4 1 5
TMTC4 WILD-TYPE 58 72 70
'TMTC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.93

Table S7296.  Gene #701: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TMTC4 MUTATED 3 3 5
TMTC4 WILD-TYPE 67 117 95
'TMTC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S7297.  Gene #701: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TMTC4 MUTATED 2 1 0 0 2 3 0 2 1
TMTC4 WILD-TYPE 39 25 30 29 37 66 20 12 21
'TMTC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S7298.  Gene #701: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMTC4 MUTATED 2 3 5 3
TMTC4 WILD-TYPE 98 69 67 118
'TMTC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.54

Table S7299.  Gene #701: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMTC4 MUTATED 3 3 4 1 2
TMTC4 WILD-TYPE 56 72 70 118 36
'TMTC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.55

Table S7300.  Gene #701: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMTC4 MUTATED 3 4 3 0 3
TMTC4 WILD-TYPE 48 72 58 71 92
'TMTC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S7301.  Gene #701: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMTC4 MUTATED 5 2 0 1 3 0 0 2 0
TMTC4 WILD-TYPE 64 46 39 15 50 20 21 36 50
'TMTC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S7302.  Gene #701: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TMTC4 MUTATED 2 0 2 0 2 1
TMTC4 WILD-TYPE 11 16 12 11 9 8
'TMTC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S7303.  Gene #701: 'TMTC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TMTC4 MUTATED 1 0 0 1 2 0 1 0 2
TMTC4 WILD-TYPE 10 7 7 8 6 7 10 9 3
'DOCK5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00048 (Fisher's exact test), Q value = 0.016

Table S7304.  Gene #702: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DOCK5 MUTATED 7 0 0 3 0
DOCK5 WILD-TYPE 25 18 46 24 23

Figure S2097.  Get High-res Image Gene #702: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DOCK5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0072

Table S7305.  Gene #702: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DOCK5 MUTATED 9 1 0
DOCK5 WILD-TYPE 34 66 36

Figure S2098.  Get High-res Image Gene #702: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DOCK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S7306.  Gene #702: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DOCK5 MUTATED 1 2 23
DOCK5 WILD-TYPE 41 171 124

Figure S2099.  Get High-res Image Gene #702: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DOCK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0927 (Fisher's exact test), Q value = 0.33

Table S7307.  Gene #702: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DOCK5 MUTATED 8 2 6
DOCK5 WILD-TYPE 54 71 69
'DOCK5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S7308.  Gene #702: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DOCK5 MUTATED 3 9 12
DOCK5 WILD-TYPE 67 111 88
'DOCK5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S7309.  Gene #702: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DOCK5 MUTATED 3 0 2 1 3 9 3 1 2
DOCK5 WILD-TYPE 38 26 28 28 36 60 17 13 20
'DOCK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S7310.  Gene #702: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DOCK5 MUTATED 3 8 5 10
DOCK5 WILD-TYPE 97 64 67 111
'DOCK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0065

Table S7311.  Gene #702: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DOCK5 MUTATED 1 5 10 2 8
DOCK5 WILD-TYPE 58 70 64 117 30

Figure S2100.  Get High-res Image Gene #702: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DOCK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0625 (Fisher's exact test), Q value = 0.27

Table S7312.  Gene #702: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DOCK5 MUTATED 3 9 2 1 9
DOCK5 WILD-TYPE 48 67 59 70 86
'DOCK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S7313.  Gene #702: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DOCK5 MUTATED 3 4 3 0 4 2 2 5 1
DOCK5 WILD-TYPE 66 44 36 16 49 18 19 33 49
'DOCK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.98

Table S7314.  Gene #702: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DOCK5 MUTATED 0 1 2 0 1 1
DOCK5 WILD-TYPE 13 15 12 11 10 8
'DOCK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.55

Table S7315.  Gene #702: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DOCK5 MUTATED 0 0 0 0 1 0 3 1 0
DOCK5 WILD-TYPE 11 7 7 9 7 7 8 8 5
'DNAJC16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7316.  Gene #703: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DNAJC16 MUTATED 1 0 1 1 0
DNAJC16 WILD-TYPE 31 18 45 26 23
'DNAJC16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7317.  Gene #703: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DNAJC16 MUTATED 1 1 1
DNAJC16 WILD-TYPE 42 66 35
'DNAJC16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 0.2

Table S7318.  Gene #703: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DNAJC16 MUTATED 1 1 7
DNAJC16 WILD-TYPE 41 172 140

Figure S2101.  Get High-res Image Gene #703: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNAJC16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 0.31

Table S7319.  Gene #703: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DNAJC16 MUTATED 4 0 3
DNAJC16 WILD-TYPE 58 73 72
'DNAJC16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S7320.  Gene #703: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DNAJC16 MUTATED 1 3 4
DNAJC16 WILD-TYPE 69 117 96
'DNAJC16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S7321.  Gene #703: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DNAJC16 MUTATED 2 0 1 0 1 3 0 1 0
DNAJC16 WILD-TYPE 39 26 29 29 38 66 20 13 22
'DNAJC16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S7322.  Gene #703: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DNAJC16 MUTATED 0 4 2 3
DNAJC16 WILD-TYPE 100 68 70 118
'DNAJC16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S7323.  Gene #703: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DNAJC16 MUTATED 0 1 5 2 1
DNAJC16 WILD-TYPE 59 74 69 117 37
'DNAJC16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S7324.  Gene #703: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DNAJC16 MUTATED 1 4 0 0 4
DNAJC16 WILD-TYPE 50 72 61 71 91
'DNAJC16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S7325.  Gene #703: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DNAJC16 MUTATED 2 1 0 1 0 2 0 1 2
DNAJC16 WILD-TYPE 67 47 39 15 53 18 21 37 48
'DNAJC16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S7326.  Gene #703: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DNAJC16 MUTATED 0 1 1 0 1 0
DNAJC16 WILD-TYPE 13 15 13 11 10 9
'DNAJC16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.94

Table S7327.  Gene #703: 'DNAJC16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DNAJC16 MUTATED 1 0 0 0 0 0 2 0 0
DNAJC16 WILD-TYPE 10 7 7 9 8 7 9 9 5
'PHF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S7328.  Gene #704: 'PHF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PHF1 MUTATED 1 1 4
PHF1 WILD-TYPE 41 172 143
'PHF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S7329.  Gene #704: 'PHF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PHF1 MUTATED 2 1 3
PHF1 WILD-TYPE 60 72 72
'PHF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7330.  Gene #704: 'PHF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PHF1 MUTATED 1 3 2
PHF1 WILD-TYPE 69 117 98
'PHF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.45

Table S7331.  Gene #704: 'PHF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PHF1 MUTATED 1 0 0 3 0 1 1 0 0
PHF1 WILD-TYPE 40 26 30 26 39 68 19 14 22
'PHF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0704 (Fisher's exact test), Q value = 0.29

Table S7332.  Gene #704: 'PHF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PHF1 MUTATED 1 2 3 0
PHF1 WILD-TYPE 99 70 69 121
'PHF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0518 (Fisher's exact test), Q value = 0.24

Table S7333.  Gene #704: 'PHF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PHF1 MUTATED 1 1 4 0 0
PHF1 WILD-TYPE 58 74 70 119 38
'PHF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00498 (Fisher's exact test), Q value = 0.066

Table S7334.  Gene #704: 'PHF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PHF1 MUTATED 0 5 1 0 0
PHF1 WILD-TYPE 51 71 60 71 95

Figure S2102.  Get High-res Image Gene #704: 'PHF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PHF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S7335.  Gene #704: 'PHF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PHF1 MUTATED 2 1 1 2 0 0 0 0 0
PHF1 WILD-TYPE 67 47 38 14 53 20 21 38 50
'PHF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00606 (Fisher's exact test), Q value = 0.073

Table S7336.  Gene #704: 'PHF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PHF1 MUTATED 0 0 0 0 3 0
PHF1 WILD-TYPE 13 16 14 11 8 9

Figure S2103.  Get High-res Image Gene #704: 'PHF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PHF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S7337.  Gene #704: 'PHF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PHF1 MUTATED 0 0 0 1 1 1 0 0 0
PHF1 WILD-TYPE 11 7 7 8 7 6 11 9 5
'OR2V2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S7338.  Gene #705: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR2V2 MUTATED 1 3 2
OR2V2 WILD-TYPE 41 170 145
'OR2V2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.97

Table S7339.  Gene #705: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR2V2 MUTATED 2 1 3
OR2V2 WILD-TYPE 60 72 72
'OR2V2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S7340.  Gene #705: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR2V2 MUTATED 1 2 3
OR2V2 WILD-TYPE 69 118 97
'OR2V2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S7341.  Gene #705: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR2V2 MUTATED 0 0 0 1 1 2 1 0 1
OR2V2 WILD-TYPE 41 26 30 28 38 67 19 14 21
'OR2V2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S7342.  Gene #705: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR2V2 MUTATED 1 2 2 1
OR2V2 WILD-TYPE 99 70 70 120
'OR2V2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S7343.  Gene #705: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR2V2 MUTATED 2 1 2 0 1
OR2V2 WILD-TYPE 57 74 72 119 37
'OR2V2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S7344.  Gene #705: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR2V2 MUTATED 0 3 2 0 1
OR2V2 WILD-TYPE 51 73 59 71 94
'OR2V2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S7345.  Gene #705: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR2V2 MUTATED 1 1 0 2 1 0 0 1 0
OR2V2 WILD-TYPE 68 47 39 14 52 20 21 37 50
'OR2V2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S7346.  Gene #705: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR2V2 MUTATED 0 1 0 1 1 0
OR2V2 WILD-TYPE 13 15 14 10 10 9
'OR2V2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.76

Table S7347.  Gene #705: 'OR2V2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR2V2 MUTATED 0 1 0 1 0 1 0 0 0
OR2V2 WILD-TYPE 11 6 7 8 8 6 11 9 5
'EIF2B5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.74

Table S7348.  Gene #706: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EIF2B5 MUTATED 3 0 1 1 0
EIF2B5 WILD-TYPE 29 18 45 26 23
'EIF2B5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S7349.  Gene #706: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EIF2B5 MUTATED 3 1 1
EIF2B5 WILD-TYPE 40 66 35
'EIF2B5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S7350.  Gene #706: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EIF2B5 MUTATED 3 5 7
EIF2B5 WILD-TYPE 39 168 140
'EIF2B5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7351.  Gene #706: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EIF2B5 MUTATED 3 3 4
EIF2B5 WILD-TYPE 59 70 71
'EIF2B5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.98

Table S7352.  Gene #706: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EIF2B5 MUTATED 2 6 6
EIF2B5 WILD-TYPE 68 114 94
'EIF2B5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S7353.  Gene #706: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EIF2B5 MUTATED 2 0 2 2 2 3 3 0 0
EIF2B5 WILD-TYPE 39 26 28 27 37 66 17 14 22
'EIF2B5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.15

Table S7354.  Gene #706: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EIF2B5 MUTATED 2 8 1 4
EIF2B5 WILD-TYPE 98 64 71 117

Figure S2104.  Get High-res Image Gene #706: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EIF2B5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S7355.  Gene #706: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EIF2B5 MUTATED 2 3 5 2 3
EIF2B5 WILD-TYPE 57 72 69 117 35
'EIF2B5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 0.25

Table S7356.  Gene #706: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EIF2B5 MUTATED 2 7 0 1 5
EIF2B5 WILD-TYPE 49 69 61 70 90
'EIF2B5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.76

Table S7357.  Gene #706: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EIF2B5 MUTATED 5 1 0 1 3 2 0 2 1
EIF2B5 WILD-TYPE 64 47 39 15 50 18 21 36 49
'EIF2B5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S7358.  Gene #706: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EIF2B5 MUTATED 0 1 0 1 1 0
EIF2B5 WILD-TYPE 13 15 14 10 10 9
'EIF2B5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7359.  Gene #706: 'EIF2B5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EIF2B5 MUTATED 1 0 0 1 0 0 1 0 0
EIF2B5 WILD-TYPE 10 7 7 8 8 7 10 9 5
'SR140 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00309 (Fisher's exact test), Q value = 0.048

Table S7360.  Gene #707: 'SR140 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SR140 MUTATED 0 1 10
SR140 WILD-TYPE 42 172 137

Figure S2105.  Get High-res Image Gene #707: 'SR140 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SR140 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S7361.  Gene #707: 'SR140 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SR140 MUTATED 4 1 4
SR140 WILD-TYPE 58 72 71
'SR140 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 0.18

Table S7362.  Gene #707: 'SR140 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SR140 MUTATED 1 1 7
SR140 WILD-TYPE 69 119 93

Figure S2106.  Get High-res Image Gene #707: 'SR140 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SR140 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S7363.  Gene #707: 'SR140 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SR140 MUTATED 1 1 0 0 0 7 0 0 0
SR140 WILD-TYPE 40 25 30 29 39 62 20 14 22
'SR140 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.24

Table S7364.  Gene #707: 'SR140 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SR140 MUTATED 0 4 4 3
SR140 WILD-TYPE 100 68 68 118
'SR140 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0715 (Fisher's exact test), Q value = 0.29

Table S7365.  Gene #707: 'SR140 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SR140 MUTATED 0 2 6 2 1
SR140 WILD-TYPE 59 73 68 117 37
'SR140 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.53

Table S7366.  Gene #707: 'SR140 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SR140 MUTATED 2 5 1 1 1
SR140 WILD-TYPE 49 71 60 70 94
'SR140 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.53

Table S7367.  Gene #707: 'SR140 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SR140 MUTATED 2 3 0 2 1 0 1 0 1
SR140 WILD-TYPE 67 45 39 14 52 20 20 38 49
'SR140 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S7368.  Gene #707: 'SR140 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SR140 MUTATED 0 0 1 0 3 0
SR140 WILD-TYPE 13 16 13 11 8 9

Figure S2107.  Get High-res Image Gene #707: 'SR140 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SR140 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S7369.  Gene #707: 'SR140 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SR140 MUTATED 0 0 0 1 0 2 1 0 0
SR140 WILD-TYPE 11 7 7 8 8 5 10 9 5
'ABI3BP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S7370.  Gene #708: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ABI3BP MUTATED 2 0 0 2 1
ABI3BP WILD-TYPE 30 18 46 25 22
'ABI3BP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S7371.  Gene #708: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ABI3BP MUTATED 2 1 2
ABI3BP WILD-TYPE 41 66 34
'ABI3BP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.99

Table S7372.  Gene #708: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ABI3BP MUTATED 1 11 9
ABI3BP WILD-TYPE 41 162 138
'ABI3BP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.23

Table S7373.  Gene #708: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ABI3BP MUTATED 9 3 3
ABI3BP WILD-TYPE 53 70 72

Figure S2108.  Get High-res Image Gene #708: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ABI3BP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 0.18

Table S7374.  Gene #708: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ABI3BP MUTATED 1 5 11
ABI3BP WILD-TYPE 69 115 89

Figure S2109.  Get High-res Image Gene #708: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ABI3BP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S7375.  Gene #708: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ABI3BP MUTATED 2 1 2 1 1 6 2 0 2
ABI3BP WILD-TYPE 39 25 28 28 38 63 18 14 20
'ABI3BP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S7376.  Gene #708: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ABI3BP MUTATED 6 2 6 7
ABI3BP WILD-TYPE 94 70 66 114
'ABI3BP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S7377.  Gene #708: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ABI3BP MUTATED 6 4 4 4 3
ABI3BP WILD-TYPE 53 71 70 115 35
'ABI3BP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S7378.  Gene #708: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ABI3BP MUTATED 3 8 3 3 3
ABI3BP WILD-TYPE 48 68 58 68 92
'ABI3BP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.62

Table S7379.  Gene #708: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ABI3BP MUTATED 2 6 2 2 4 1 0 2 1
ABI3BP WILD-TYPE 67 42 37 14 49 19 21 36 49
'ABI3BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S7380.  Gene #708: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ABI3BP MUTATED 0 1 0 1 3 1
ABI3BP WILD-TYPE 13 15 14 10 8 8
'ABI3BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S7381.  Gene #708: 'ABI3BP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ABI3BP MUTATED 0 1 0 1 1 0 2 1 0
ABI3BP WILD-TYPE 11 6 7 8 7 7 9 8 5
'FBN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S7382.  Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FBN2 MUTATED 10 0 0 4 2
FBN2 WILD-TYPE 22 18 46 23 21

Figure S2110.  Get High-res Image Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FBN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00108 (Fisher's exact test), Q value = 0.026

Table S7383.  Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FBN2 MUTATED 11 2 3
FBN2 WILD-TYPE 32 65 33

Figure S2111.  Get High-res Image Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FBN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S7384.  Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FBN2 MUTATED 2 10 31
FBN2 WILD-TYPE 40 163 116

Figure S2112.  Get High-res Image Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FBN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.21

Table S7385.  Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FBN2 MUTATED 12 4 10
FBN2 WILD-TYPE 50 69 65

Figure S2113.  Get High-res Image Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FBN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.2

Table S7386.  Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FBN2 MUTATED 5 11 19
FBN2 WILD-TYPE 65 109 81

Figure S2114.  Get High-res Image Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FBN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S7387.  Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FBN2 MUTATED 5 2 1 3 3 15 2 1 3
FBN2 WILD-TYPE 36 24 29 26 36 54 18 13 19
'FBN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S7388.  Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FBN2 MUTATED 6 8 11 18
FBN2 WILD-TYPE 94 64 61 103
'FBN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00124 (Fisher's exact test), Q value = 0.029

Table S7389.  Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FBN2 MUTATED 4 6 14 8 11
FBN2 WILD-TYPE 55 69 60 111 27

Figure S2115.  Get High-res Image Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00652 (Fisher's exact test), Q value = 0.076

Table S7390.  Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FBN2 MUTATED 1 14 6 4 16
FBN2 WILD-TYPE 50 62 55 67 79

Figure S2116.  Get High-res Image Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FBN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S7391.  Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FBN2 MUTATED 5 10 4 3 3 1 0 10 5
FBN2 WILD-TYPE 64 38 35 13 50 19 21 28 45

Figure S2117.  Get High-res Image Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FBN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.77

Table S7392.  Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FBN2 MUTATED 1 2 1 2 4 2
FBN2 WILD-TYPE 12 14 13 9 7 7
'FBN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S7393.  Gene #709: 'FBN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FBN2 MUTATED 1 0 0 2 1 2 5 1 0
FBN2 WILD-TYPE 10 7 7 7 7 5 6 8 5
'FAM98B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S7394.  Gene #710: 'FAM98B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM98B MUTATED 0 1 3
FAM98B WILD-TYPE 42 172 144
'FAM98B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7395.  Gene #710: 'FAM98B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM98B MUTATED 1 1 1
FAM98B WILD-TYPE 61 72 74
'FAM98B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S7396.  Gene #710: 'FAM98B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM98B MUTATED 0 1 2 1
FAM98B WILD-TYPE 100 71 70 120
'FAM98B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S7397.  Gene #710: 'FAM98B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM98B MUTATED 1 1 1 0 1
FAM98B WILD-TYPE 58 74 73 119 37
'FAM98B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S7398.  Gene #710: 'FAM98B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM98B MUTATED 1 2 0 0 1
FAM98B WILD-TYPE 50 74 61 71 94
'FAM98B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S7399.  Gene #710: 'FAM98B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM98B MUTATED 2 1 0 0 0 0 0 1 0
FAM98B WILD-TYPE 67 47 39 16 53 20 21 37 50
'KDM5C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00091 (Fisher's exact test), Q value = 0.023

Table S7400.  Gene #711: 'KDM5C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KDM5C MUTATED 7 0 1 0 0
KDM5C WILD-TYPE 25 18 45 27 23

Figure S2118.  Get High-res Image Gene #711: 'KDM5C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KDM5C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00144 (Fisher's exact test), Q value = 0.031

Table S7401.  Gene #711: 'KDM5C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KDM5C MUTATED 7 1 0
KDM5C WILD-TYPE 36 66 36

Figure S2119.  Get High-res Image Gene #711: 'KDM5C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KDM5C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S7402.  Gene #711: 'KDM5C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KDM5C MUTATED 1 7 13
KDM5C WILD-TYPE 41 166 134
'KDM5C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.94

Table S7403.  Gene #711: 'KDM5C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KDM5C MUTATED 5 3 5
KDM5C WILD-TYPE 57 70 70
'KDM5C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S7404.  Gene #711: 'KDM5C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KDM5C MUTATED 3 8 6
KDM5C WILD-TYPE 67 112 94
'KDM5C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00432 (Fisher's exact test), Q value = 0.06

Table S7405.  Gene #711: 'KDM5C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KDM5C MUTATED 1 0 0 4 5 1 2 0 4
KDM5C WILD-TYPE 40 26 30 25 34 68 18 14 18

Figure S2120.  Get High-res Image Gene #711: 'KDM5C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'KDM5C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.95

Table S7406.  Gene #711: 'KDM5C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KDM5C MUTATED 4 5 3 9
KDM5C WILD-TYPE 96 67 69 112
'KDM5C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00768 (Fisher's exact test), Q value = 0.082

Table S7407.  Gene #711: 'KDM5C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KDM5C MUTATED 3 4 5 2 7
KDM5C WILD-TYPE 56 71 69 117 31

Figure S2121.  Get High-res Image Gene #711: 'KDM5C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KDM5C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S7408.  Gene #711: 'KDM5C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KDM5C MUTATED 3 6 3 2 7
KDM5C WILD-TYPE 48 70 58 69 88
'KDM5C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0373 (Fisher's exact test), Q value = 0.21

Table S7409.  Gene #711: 'KDM5C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KDM5C MUTATED 3 4 0 1 3 2 0 7 1
KDM5C WILD-TYPE 66 44 39 15 50 18 21 31 49

Figure S2122.  Get High-res Image Gene #711: 'KDM5C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARAP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0296 (Fisher's exact test), Q value = 0.18

Table S7410.  Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ARAP3 MUTATED 4 0 0 1 0
ARAP3 WILD-TYPE 28 18 46 26 23

Figure S2123.  Get High-res Image Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARAP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00247 (Fisher's exact test), Q value = 0.042

Table S7411.  Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ARAP3 MUTATED 5 0 0
ARAP3 WILD-TYPE 38 67 36

Figure S2124.  Get High-res Image Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00696 (Fisher's exact test), Q value = 0.078

Table S7412.  Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARAP3 MUTATED 1 4 15
ARAP3 WILD-TYPE 41 169 132

Figure S2125.  Get High-res Image Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S7413.  Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARAP3 MUTATED 7 2 6
ARAP3 WILD-TYPE 55 71 69
'ARAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00099 (Fisher's exact test), Q value = 0.025

Table S7414.  Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARAP3 MUTATED 0 4 12
ARAP3 WILD-TYPE 70 116 88

Figure S2126.  Get High-res Image Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ARAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S7415.  Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARAP3 MUTATED 1 0 1 1 1 9 2 1 0
ARAP3 WILD-TYPE 40 26 29 28 38 60 18 13 22
'ARAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.93

Table S7416.  Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARAP3 MUTATED 4 5 6 6
ARAP3 WILD-TYPE 96 67 66 115
'ARAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S7417.  Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARAP3 MUTATED 3 3 9 0 6
ARAP3 WILD-TYPE 56 72 65 119 32

Figure S2127.  Get High-res Image Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.17

Table S7418.  Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARAP3 MUTATED 3 9 3 0 5
ARAP3 WILD-TYPE 48 67 58 71 90

Figure S2128.  Get High-res Image Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ARAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0939 (Fisher's exact test), Q value = 0.33

Table S7419.  Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARAP3 MUTATED 4 5 2 3 0 1 1 3 1
ARAP3 WILD-TYPE 65 43 37 13 53 19 20 35 49
'ARAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S7420.  Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ARAP3 MUTATED 0 1 1 1 2 1
ARAP3 WILD-TYPE 13 15 13 10 9 8
'ARAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.21

Table S7421.  Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ARAP3 MUTATED 2 0 0 0 0 0 4 0 0
ARAP3 WILD-TYPE 9 7 7 9 8 7 7 9 5

Figure S2129.  Get High-res Image Gene #712: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CHRNA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.27

Table S7422.  Gene #713: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CHRNA3 MUTATED 3 2 5
CHRNA3 WILD-TYPE 39 171 142
'CHRNA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.94

Table S7423.  Gene #713: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CHRNA3 MUTATED 4 2 3
CHRNA3 WILD-TYPE 58 71 72
'CHRNA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S7424.  Gene #713: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CHRNA3 MUTATED 3 2 3
CHRNA3 WILD-TYPE 67 118 97
'CHRNA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S7425.  Gene #713: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CHRNA3 MUTATED 1 0 0 1 3 3 0 0 0
CHRNA3 WILD-TYPE 40 26 30 28 36 66 20 14 22
'CHRNA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S7426.  Gene #713: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CHRNA3 MUTATED 2 4 3 1
CHRNA3 WILD-TYPE 98 68 69 120
'CHRNA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0364 (Fisher's exact test), Q value = 0.2

Table S7427.  Gene #713: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CHRNA3 MUTATED 2 2 5 0 1
CHRNA3 WILD-TYPE 57 73 69 119 37

Figure S2130.  Get High-res Image Gene #713: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHRNA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 0.27

Table S7428.  Gene #713: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CHRNA3 MUTATED 2 5 2 1 0
CHRNA3 WILD-TYPE 49 71 59 70 95
'CHRNA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S7429.  Gene #713: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CHRNA3 MUTATED 2 2 0 2 3 1 0 0 0
CHRNA3 WILD-TYPE 67 46 39 14 50 19 21 38 50
'CHRNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S7430.  Gene #713: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CHRNA3 MUTATED 1 0 1 0 2 0
CHRNA3 WILD-TYPE 12 16 13 11 9 9
'CHRNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S7431.  Gene #713: 'CHRNA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CHRNA3 MUTATED 0 0 0 1 1 0 1 0 1
CHRNA3 WILD-TYPE 11 7 7 8 7 7 10 9 4
'FLT3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S7432.  Gene #714: 'FLT3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FLT3 MUTATED 2 0 0 2 0
FLT3 WILD-TYPE 30 18 46 25 23
'FLT3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S7433.  Gene #714: 'FLT3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FLT3 MUTATED 2 1 1
FLT3 WILD-TYPE 41 66 35
'FLT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.75

Table S7434.  Gene #714: 'FLT3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FLT3 MUTATED 1 10 12
FLT3 WILD-TYPE 41 163 135
'FLT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.58

Table S7435.  Gene #714: 'FLT3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FLT3 MUTATED 4 10 5
FLT3 WILD-TYPE 58 63 70
'FLT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.89

Table S7436.  Gene #714: 'FLT3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FLT3 MUTATED 4 12 7
FLT3 WILD-TYPE 66 108 93
'FLT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S7437.  Gene #714: 'FLT3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FLT3 MUTATED 4 1 3 4 1 5 2 2 1
FLT3 WILD-TYPE 37 25 27 25 38 64 18 12 21
'FLT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S7438.  Gene #714: 'FLT3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FLT3 MUTATED 8 5 7 4
FLT3 WILD-TYPE 92 67 65 117
'FLT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.13

Table S7439.  Gene #714: 'FLT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FLT3 MUTATED 5 10 5 2 2
FLT3 WILD-TYPE 54 65 69 117 36

Figure S2131.  Get High-res Image Gene #714: 'FLT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FLT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S7440.  Gene #714: 'FLT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FLT3 MUTATED 8 6 3 3 4
FLT3 WILD-TYPE 43 70 58 68 91
'FLT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S7441.  Gene #714: 'FLT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FLT3 MUTATED 7 5 1 1 5 3 0 2 0
FLT3 WILD-TYPE 62 43 38 15 48 17 21 36 50
'FLT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S7442.  Gene #714: 'FLT3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FLT3 MUTATED 0 0 1 1 0 2
FLT3 WILD-TYPE 13 16 13 10 11 7
'FLT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S7443.  Gene #714: 'FLT3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FLT3 MUTATED 1 0 1 0 1 0 0 1 0
FLT3 WILD-TYPE 10 7 6 9 7 7 11 8 5
'STX16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S7444.  Gene #715: 'STX16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
STX16 MUTATED 2 0 1 0 0
STX16 WILD-TYPE 30 18 45 27 23
'STX16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S7445.  Gene #715: 'STX16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
STX16 MUTATED 2 0 1
STX16 WILD-TYPE 41 67 35
'STX16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S7446.  Gene #715: 'STX16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STX16 MUTATED 0 3 4
STX16 WILD-TYPE 42 170 143
'STX16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.29

Table S7447.  Gene #715: 'STX16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STX16 MUTATED 3 1 0
STX16 WILD-TYPE 59 72 75
'STX16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S7448.  Gene #715: 'STX16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STX16 MUTATED 1 1 4
STX16 WILD-TYPE 69 119 96
'STX16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S7449.  Gene #715: 'STX16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STX16 MUTATED 0 0 0 1 1 2 1 0 1
STX16 WILD-TYPE 41 26 30 28 38 67 19 14 21
'STX16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S7450.  Gene #715: 'STX16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STX16 MUTATED 1 0 3 3
STX16 WILD-TYPE 99 72 69 118
'STX16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.63

Table S7451.  Gene #715: 'STX16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STX16 MUTATED 2 1 1 1 2
STX16 WILD-TYPE 57 74 73 118 36
'STX16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S7452.  Gene #715: 'STX16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STX16 MUTATED 1 1 2 1 2
STX16 WILD-TYPE 50 75 59 70 93
'STX16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.73

Table S7453.  Gene #715: 'STX16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STX16 MUTATED 1 3 0 0 0 0 0 2 1
STX16 WILD-TYPE 68 45 39 16 53 20 21 36 49
'ERBB2IP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0521 (Fisher's exact test), Q value = 0.24

Table S7454.  Gene #716: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ERBB2IP MUTATED 1 0 0 3 0
ERBB2IP WILD-TYPE 31 18 46 24 23
'ERBB2IP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S7455.  Gene #716: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ERBB2IP MUTATED 3 1 0
ERBB2IP WILD-TYPE 40 66 36
'ERBB2IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00524 (Fisher's exact test), Q value = 0.068

Table S7456.  Gene #716: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ERBB2IP MUTATED 1 2 12
ERBB2IP WILD-TYPE 41 171 135

Figure S2132.  Get High-res Image Gene #716: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ERBB2IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0449 (Fisher's exact test), Q value = 0.23

Table S7457.  Gene #716: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ERBB2IP MUTATED 7 1 3
ERBB2IP WILD-TYPE 55 72 72

Figure S2133.  Get High-res Image Gene #716: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ERBB2IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S7458.  Gene #716: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ERBB2IP MUTATED 1 5 8
ERBB2IP WILD-TYPE 69 115 92
'ERBB2IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S7459.  Gene #716: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ERBB2IP MUTATED 2 1 1 2 2 6 0 0 0
ERBB2IP WILD-TYPE 39 25 29 27 37 63 20 14 22
'ERBB2IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S7460.  Gene #716: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ERBB2IP MUTATED 1 3 6 5
ERBB2IP WILD-TYPE 99 69 66 116
'ERBB2IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S7461.  Gene #716: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ERBB2IP MUTATED 2 2 6 2 3
ERBB2IP WILD-TYPE 57 73 68 117 35
'ERBB2IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S7462.  Gene #716: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ERBB2IP MUTATED 1 6 2 1 4
ERBB2IP WILD-TYPE 50 70 59 70 91
'ERBB2IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S7463.  Gene #716: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ERBB2IP MUTATED 4 3 0 1 2 1 0 2 1
ERBB2IP WILD-TYPE 65 45 39 15 51 19 21 36 49
'ERBB2IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S7464.  Gene #716: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ERBB2IP MUTATED 0 0 3 1 1 0
ERBB2IP WILD-TYPE 13 16 11 10 10 9
'ERBB2IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S7465.  Gene #716: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ERBB2IP MUTATED 1 0 0 1 0 2 1 0 0
ERBB2IP WILD-TYPE 10 7 7 8 8 5 10 9 5
'RNF145 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 0.16

Table S7466.  Gene #717: 'RNF145 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RNF145 MUTATED 2 2 10
RNF145 WILD-TYPE 40 171 137

Figure S2134.  Get High-res Image Gene #717: 'RNF145 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNF145 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.018

Table S7467.  Gene #717: 'RNF145 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RNF145 MUTATED 9 0 3
RNF145 WILD-TYPE 53 73 72

Figure S2135.  Get High-res Image Gene #717: 'RNF145 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RNF145 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S7468.  Gene #717: 'RNF145 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RNF145 MUTATED 2 4 7
RNF145 WILD-TYPE 68 116 93
'RNF145 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.84

Table S7469.  Gene #717: 'RNF145 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RNF145 MUTATED 0 1 2 2 1 6 1 0 0
RNF145 WILD-TYPE 41 25 28 27 38 63 19 14 22
'RNF145 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S7470.  Gene #717: 'RNF145 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RNF145 MUTATED 2 3 6 3
RNF145 WILD-TYPE 98 69 66 118
'RNF145 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00821 (Fisher's exact test), Q value = 0.085

Table S7471.  Gene #717: 'RNF145 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RNF145 MUTATED 1 2 8 1 2
RNF145 WILD-TYPE 58 73 66 118 36

Figure S2136.  Get High-res Image Gene #717: 'RNF145 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RNF145 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S7472.  Gene #717: 'RNF145 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RNF145 MUTATED 1 5 3 1 4
RNF145 WILD-TYPE 50 71 58 70 91
'RNF145 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S7473.  Gene #717: 'RNF145 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RNF145 MUTATED 3 3 0 1 3 0 0 2 2
RNF145 WILD-TYPE 66 45 39 15 50 20 21 36 48
'RNF145 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S7474.  Gene #717: 'RNF145 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RNF145 MUTATED 1 1 2 0 3 0
RNF145 WILD-TYPE 12 15 12 11 8 9
'RNF145 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S7475.  Gene #717: 'RNF145 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RNF145 MUTATED 1 0 0 2 1 0 2 1 0
RNF145 WILD-TYPE 10 7 7 7 7 7 9 8 5
'KTN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.18

Table S7476.  Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KTN1 MUTATED 4 0 0 1 0
KTN1 WILD-TYPE 28 18 46 26 23

Figure S2137.  Get High-res Image Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KTN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00269 (Fisher's exact test), Q value = 0.044

Table S7477.  Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KTN1 MUTATED 5 0 0
KTN1 WILD-TYPE 38 67 36

Figure S2138.  Get High-res Image Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KTN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00086 (Fisher's exact test), Q value = 0.023

Table S7478.  Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KTN1 MUTATED 0 3 15
KTN1 WILD-TYPE 42 170 132

Figure S2139.  Get High-res Image Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KTN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.89

Table S7479.  Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KTN1 MUTATED 3 3 6
KTN1 WILD-TYPE 59 70 69
'KTN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.15

Table S7480.  Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KTN1 MUTATED 0 7 9
KTN1 WILD-TYPE 70 113 91

Figure S2140.  Get High-res Image Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KTN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S7481.  Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KTN1 MUTATED 1 2 2 1 2 5 2 1 0
KTN1 WILD-TYPE 40 24 28 28 37 64 18 13 22
'KTN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S7482.  Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KTN1 MUTATED 2 6 4 6
KTN1 WILD-TYPE 98 66 68 115
'KTN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S7483.  Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KTN1 MUTATED 2 2 8 0 6
KTN1 WILD-TYPE 57 73 66 119 32

Figure S2141.  Get High-res Image Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KTN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S7484.  Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KTN1 MUTATED 0 7 4 0 5
KTN1 WILD-TYPE 51 69 57 71 90

Figure S2142.  Get High-res Image Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KTN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00043 (Fisher's exact test), Q value = 0.015

Table S7485.  Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KTN1 MUTATED 1 5 0 4 0 2 0 3 1
KTN1 WILD-TYPE 68 43 39 12 53 18 21 35 49

Figure S2143.  Get High-res Image Gene #718: 'KTN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NIPBL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0065

Table S7486.  Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NIPBL MUTATED 8 0 0 1 0
NIPBL WILD-TYPE 24 18 46 26 23

Figure S2144.  Get High-res Image Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NIPBL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00737 (Fisher's exact test), Q value = 0.08

Table S7487.  Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NIPBL MUTATED 7 1 1
NIPBL WILD-TYPE 36 66 35

Figure S2145.  Get High-res Image Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NIPBL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0069

Table S7488.  Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NIPBL MUTATED 4 5 23
NIPBL WILD-TYPE 38 168 124

Figure S2146.  Get High-res Image Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NIPBL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00887 (Fisher's exact test), Q value = 0.088

Table S7489.  Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NIPBL MUTATED 13 4 5
NIPBL WILD-TYPE 49 69 70

Figure S2147.  Get High-res Image Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NIPBL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00375 (Fisher's exact test), Q value = 0.055

Table S7490.  Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NIPBL MUTATED 1 11 16
NIPBL WILD-TYPE 69 109 84

Figure S2148.  Get High-res Image Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NIPBL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S7491.  Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NIPBL MUTATED 4 2 2 2 5 10 2 1 0
NIPBL WILD-TYPE 37 24 28 27 34 59 18 13 22
'NIPBL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S7492.  Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NIPBL MUTATED 5 9 7 11
NIPBL WILD-TYPE 95 63 65 110
'NIPBL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00222 (Fisher's exact test), Q value = 0.04

Table S7493.  Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NIPBL MUTATED 3 5 13 4 7
NIPBL WILD-TYPE 56 70 61 115 31

Figure S2149.  Get High-res Image Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NIPBL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S7494.  Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NIPBL MUTATED 2 14 3 3 10
NIPBL WILD-TYPE 49 62 58 68 85

Figure S2150.  Get High-res Image Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NIPBL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.98

Table S7495.  Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NIPBL MUTATED 6 7 2 2 4 2 2 5 2
NIPBL WILD-TYPE 63 41 37 14 49 18 19 33 48
'NIPBL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0709 (Fisher's exact test), Q value = 0.29

Table S7496.  Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NIPBL MUTATED 1 1 1 0 4 0
NIPBL WILD-TYPE 12 15 13 11 7 9
'NIPBL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S7497.  Gene #719: 'NIPBL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NIPBL MUTATED 1 0 0 2 1 1 2 0 0
NIPBL WILD-TYPE 10 7 7 7 7 6 9 9 5
'DOCK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S7498.  Gene #720: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DOCK1 MUTATED 3 0 1 2 0
DOCK1 WILD-TYPE 29 18 45 25 23
'DOCK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7499.  Gene #720: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DOCK1 MUTATED 2 3 1
DOCK1 WILD-TYPE 41 64 35
'DOCK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00211 (Fisher's exact test), Q value = 0.039

Table S7500.  Gene #720: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DOCK1 MUTATED 1 5 18
DOCK1 WILD-TYPE 41 168 129

Figure S2151.  Get High-res Image Gene #720: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DOCK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S7501.  Gene #720: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DOCK1 MUTATED 5 5 8
DOCK1 WILD-TYPE 57 68 67
'DOCK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S7502.  Gene #720: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DOCK1 MUTATED 4 7 8
DOCK1 WILD-TYPE 66 113 92
'DOCK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S7503.  Gene #720: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DOCK1 MUTATED 3 3 1 0 2 8 2 0 0
DOCK1 WILD-TYPE 38 23 29 29 37 61 18 14 22
'DOCK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S7504.  Gene #720: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DOCK1 MUTATED 6 8 4 6
DOCK1 WILD-TYPE 94 64 68 115
'DOCK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0479 (Fisher's exact test), Q value = 0.23

Table S7505.  Gene #720: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DOCK1 MUTATED 1 7 9 4 3
DOCK1 WILD-TYPE 58 68 65 115 35

Figure S2152.  Get High-res Image Gene #720: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DOCK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.18

Table S7506.  Gene #720: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DOCK1 MUTATED 3 11 1 2 6
DOCK1 WILD-TYPE 48 65 60 69 89

Figure S2153.  Get High-res Image Gene #720: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DOCK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00135 (Fisher's exact test), Q value = 0.03

Table S7507.  Gene #720: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DOCK1 MUTATED 3 2 1 6 3 3 0 4 1
DOCK1 WILD-TYPE 66 46 38 10 50 17 21 34 49

Figure S2154.  Get High-res Image Gene #720: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DOCK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S7508.  Gene #720: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DOCK1 MUTATED 0 2 1 0 2 0
DOCK1 WILD-TYPE 13 14 13 11 9 9
'DOCK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S7509.  Gene #720: 'DOCK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DOCK1 MUTATED 1 0 0 1 1 0 1 0 1
DOCK1 WILD-TYPE 10 7 7 8 7 7 10 9 4
'CDH8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S7510.  Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CDH8 MUTATED 5 1 0 3 0
CDH8 WILD-TYPE 27 17 46 24 23

Figure S2155.  Get High-res Image Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDH8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.013

Table S7511.  Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CDH8 MUTATED 8 1 0
CDH8 WILD-TYPE 35 66 36

Figure S2156.  Get High-res Image Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDH8 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.014

Table S7512.  Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CDH8 MUTATED 1 8 24
CDH8 WILD-TYPE 41 165 123

Figure S2157.  Get High-res Image Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDH8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.97

Table S7513.  Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CDH8 MUTATED 8 6 9
CDH8 WILD-TYPE 54 67 66
'CDH8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.98

Table S7514.  Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CDH8 MUTATED 5 11 11
CDH8 WILD-TYPE 65 109 89
'CDH8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.76

Table S7515.  Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CDH8 MUTATED 2 3 2 3 4 11 2 0 0
CDH8 WILD-TYPE 39 23 28 26 35 58 18 14 22
'CDH8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.97

Table S7516.  Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CDH8 MUTATED 8 9 6 9
CDH8 WILD-TYPE 92 63 66 112
'CDH8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00349 (Fisher's exact test), Q value = 0.052

Table S7517.  Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CDH8 MUTATED 3 9 10 3 7
CDH8 WILD-TYPE 56 66 64 116 31

Figure S2158.  Get High-res Image Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDH8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 0.13

Table S7518.  Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CDH8 MUTATED 1 14 4 4 7
CDH8 WILD-TYPE 50 62 57 67 88

Figure S2159.  Get High-res Image Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CDH8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S7519.  Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CDH8 MUTATED 7 4 2 5 3 0 2 4 3
CDH8 WILD-TYPE 62 44 37 11 50 20 19 34 47
'CDH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.31

Table S7520.  Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CDH8 MUTATED 0 0 2 0 2 2
CDH8 WILD-TYPE 13 16 12 11 9 7
'CDH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S7521.  Gene #721: 'CDH8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CDH8 MUTATED 1 0 0 1 1 0 2 1 0
CDH8 WILD-TYPE 10 7 7 8 7 7 9 8 5
'POLDIP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 0.27

Table S7522.  Gene #722: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
POLDIP3 MUTATED 1 0 4
POLDIP3 WILD-TYPE 41 173 143
'POLDIP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S7523.  Gene #722: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
POLDIP3 MUTATED 1 3 0
POLDIP3 WILD-TYPE 69 117 100
'POLDIP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S7524.  Gene #722: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
POLDIP3 MUTATED 0 1 1 0 1 0 1 0 0
POLDIP3 WILD-TYPE 41 25 29 29 38 69 19 14 22
'POLDIP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.8

Table S7525.  Gene #722: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
POLDIP3 MUTATED 0 1 1 3
POLDIP3 WILD-TYPE 100 71 71 118
'POLDIP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00226 (Fisher's exact test), Q value = 0.04

Table S7526.  Gene #722: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
POLDIP3 MUTATED 0 0 2 0 3
POLDIP3 WILD-TYPE 59 75 72 119 35

Figure S2160.  Get High-res Image Gene #722: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'POLDIP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S7527.  Gene #722: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
POLDIP3 MUTATED 0 2 0 1 2
POLDIP3 WILD-TYPE 51 74 61 70 93
'POLDIP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S7528.  Gene #722: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
POLDIP3 MUTATED 0 0 0 2 1 0 1 1 0
POLDIP3 WILD-TYPE 69 48 39 14 52 20 20 37 50

Figure S2161.  Get High-res Image Gene #722: 'POLDIP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KLRC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0616 (Fisher's exact test), Q value = 0.27

Table S7529.  Gene #723: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KLRC3 MUTATED 1 0 4
KLRC3 WILD-TYPE 41 173 143
'KLRC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S7530.  Gene #723: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KLRC3 MUTATED 2 0 2
KLRC3 WILD-TYPE 60 73 73
'KLRC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.98

Table S7531.  Gene #723: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KLRC3 MUTATED 0 2 2
KLRC3 WILD-TYPE 70 118 98
'KLRC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S7532.  Gene #723: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KLRC3 MUTATED 1 0 0 1 1 0 0 1 0
KLRC3 WILD-TYPE 40 26 30 28 38 69 20 13 22
'KLRC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S7533.  Gene #723: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KLRC3 MUTATED 0 3 1 1
KLRC3 WILD-TYPE 100 69 71 120
'KLRC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00688 (Fisher's exact test), Q value = 0.077

Table S7534.  Gene #723: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KLRC3 MUTATED 0 0 4 0 1
KLRC3 WILD-TYPE 59 75 70 119 37

Figure S2162.  Get High-res Image Gene #723: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KLRC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.63

Table S7535.  Gene #723: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KLRC3 MUTATED 0 3 1 0 1
KLRC3 WILD-TYPE 51 73 60 71 94
'KLRC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S7536.  Gene #723: 'KLRC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KLRC3 MUTATED 0 1 0 1 2 1 0 0 0
KLRC3 WILD-TYPE 69 47 39 15 51 19 21 38 50
'ARMC9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0812 (Fisher's exact test), Q value = 0.31

Table S7537.  Gene #724: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARMC9 MUTATED 0 1 6
ARMC9 WILD-TYPE 42 172 141
'ARMC9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S7538.  Gene #724: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARMC9 MUTATED 1 1 3
ARMC9 WILD-TYPE 61 72 72
'ARMC9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S7539.  Gene #724: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARMC9 MUTATED 0 1 4
ARMC9 WILD-TYPE 70 119 96
'ARMC9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S7540.  Gene #724: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARMC9 MUTATED 1 0 0 0 0 3 0 0 1
ARMC9 WILD-TYPE 40 26 30 29 39 66 20 14 21
'ARMC9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.45

Table S7541.  Gene #724: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARMC9 MUTATED 0 3 2 2
ARMC9 WILD-TYPE 100 69 70 119
'ARMC9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 0.1

Table S7542.  Gene #724: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARMC9 MUTATED 1 0 4 0 2
ARMC9 WILD-TYPE 58 75 70 119 36

Figure S2163.  Get High-res Image Gene #724: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARMC9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S7543.  Gene #724: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARMC9 MUTATED 0 4 1 0 1
ARMC9 WILD-TYPE 51 72 60 71 94
'ARMC9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0684 (Fisher's exact test), Q value = 0.28

Table S7544.  Gene #724: 'ARMC9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARMC9 MUTATED 1 2 0 2 0 0 0 1 0
ARMC9 WILD-TYPE 68 46 39 14 53 20 21 37 50
'MAGEB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S7545.  Gene #725: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MAGEB2 MUTATED 2 0 1 0 0
MAGEB2 WILD-TYPE 30 18 45 27 23
'MAGEB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7546.  Gene #725: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MAGEB2 MUTATED 1 1 1
MAGEB2 WILD-TYPE 42 66 35
'MAGEB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S7547.  Gene #725: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAGEB2 MUTATED 1 6 4
MAGEB2 WILD-TYPE 41 167 143
'MAGEB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S7548.  Gene #725: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAGEB2 MUTATED 5 2 1
MAGEB2 WILD-TYPE 57 71 74
'MAGEB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0747 (Fisher's exact test), Q value = 0.3

Table S7549.  Gene #725: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAGEB2 MUTATED 1 2 7
MAGEB2 WILD-TYPE 69 118 93
'MAGEB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S7550.  Gene #725: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAGEB2 MUTATED 0 0 1 0 0 4 2 0 3
MAGEB2 WILD-TYPE 41 26 29 29 39 65 18 14 19

Figure S2164.  Get High-res Image Gene #725: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MAGEB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.94

Table S7551.  Gene #725: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAGEB2 MUTATED 3 3 3 2
MAGEB2 WILD-TYPE 97 69 69 119
'MAGEB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S7552.  Gene #725: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAGEB2 MUTATED 3 3 2 2 1
MAGEB2 WILD-TYPE 56 72 72 117 37
'MAGEB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.98

Table S7553.  Gene #725: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAGEB2 MUTATED 1 3 1 4 2
MAGEB2 WILD-TYPE 50 73 60 67 93
'MAGEB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S7554.  Gene #725: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAGEB2 MUTATED 2 2 2 1 1 1 0 1 1
MAGEB2 WILD-TYPE 67 46 37 15 52 19 21 37 49
'MAGEB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S7555.  Gene #725: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAGEB2 MUTATED 0 1 0 1 0 1
MAGEB2 WILD-TYPE 13 15 14 10 11 8
'MAGEB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S7556.  Gene #725: 'MAGEB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAGEB2 MUTATED 0 1 0 0 0 0 0 2 0
MAGEB2 WILD-TYPE 11 6 7 9 8 7 11 7 5
'ZNF83 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.2

Table S7557.  Gene #726: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF83 MUTATED 3 0 0 3 0
ZNF83 WILD-TYPE 29 18 46 24 23

Figure S2165.  Get High-res Image Gene #726: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF83 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S7558.  Gene #726: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF83 MUTATED 4 1 1
ZNF83 WILD-TYPE 39 66 35
'ZNF83 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00054 (Fisher's exact test), Q value = 0.017

Table S7559.  Gene #726: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF83 MUTATED 0 2 14
ZNF83 WILD-TYPE 42 171 133

Figure S2166.  Get High-res Image Gene #726: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF83 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 0.32

Table S7560.  Gene #726: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF83 MUTATED 6 1 4
ZNF83 WILD-TYPE 56 72 71
'ZNF83 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.85

Table S7561.  Gene #726: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF83 MUTATED 2 6 7
ZNF83 WILD-TYPE 68 114 93
'ZNF83 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S7562.  Gene #726: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF83 MUTATED 0 1 1 0 3 7 2 0 1
ZNF83 WILD-TYPE 41 25 29 29 36 62 18 14 21
'ZNF83 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S7563.  Gene #726: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF83 MUTATED 1 5 4 7
ZNF83 WILD-TYPE 99 67 68 114
'ZNF83 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.41

Table S7564.  Gene #726: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF83 MUTATED 1 2 6 4 4
ZNF83 WILD-TYPE 58 73 68 115 34
'ZNF83 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0554 (Fisher's exact test), Q value = 0.25

Table S7565.  Gene #726: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF83 MUTATED 2 5 0 1 8
ZNF83 WILD-TYPE 49 71 61 70 87
'ZNF83 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S7566.  Gene #726: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF83 MUTATED 3 2 0 0 3 2 0 4 2
ZNF83 WILD-TYPE 66 46 39 16 50 18 21 34 48
'ZNF83 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S7567.  Gene #726: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF83 MUTATED 0 0 1 0 2 0
ZNF83 WILD-TYPE 13 16 13 11 9 9
'ZNF83 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S7568.  Gene #726: 'ZNF83 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF83 MUTATED 0 0 0 0 0 2 1 0 0
ZNF83 WILD-TYPE 11 7 7 9 8 5 10 9 5
'ADAMTS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00946 (Fisher's exact test), Q value = 0.091

Table S7569.  Gene #727: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ADAMTS4 MUTATED 1 2 11
ADAMTS4 WILD-TYPE 41 171 136

Figure S2167.  Get High-res Image Gene #727: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADAMTS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00938 (Fisher's exact test), Q value = 0.091

Table S7570.  Gene #727: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ADAMTS4 MUTATED 2 1 10
ADAMTS4 WILD-TYPE 60 72 65

Figure S2168.  Get High-res Image Gene #727: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ADAMTS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0906 (Fisher's exact test), Q value = 0.33

Table S7571.  Gene #727: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ADAMTS4 MUTATED 0 5 6
ADAMTS4 WILD-TYPE 70 115 94
'ADAMTS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0656 (Fisher's exact test), Q value = 0.28

Table S7572.  Gene #727: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ADAMTS4 MUTATED 0 0 1 4 0 5 1 0 0
ADAMTS4 WILD-TYPE 41 26 29 25 39 64 19 14 22
'ADAMTS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S7573.  Gene #727: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ADAMTS4 MUTATED 2 10 1 1
ADAMTS4 WILD-TYPE 98 62 71 120

Figure S2169.  Get High-res Image Gene #727: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ADAMTS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S7574.  Gene #727: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ADAMTS4 MUTATED 0 3 10 1 0
ADAMTS4 WILD-TYPE 59 72 64 118 38

Figure S2170.  Get High-res Image Gene #727: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ADAMTS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.011

Table S7575.  Gene #727: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ADAMTS4 MUTATED 2 10 0 1 1
ADAMTS4 WILD-TYPE 49 66 61 70 94

Figure S2171.  Get High-res Image Gene #727: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ADAMTS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0084

Table S7576.  Gene #727: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ADAMTS4 MUTATED 2 2 1 5 1 3 0 0 0
ADAMTS4 WILD-TYPE 67 46 38 11 52 17 21 38 50

Figure S2172.  Get High-res Image Gene #727: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ADAMTS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S7577.  Gene #727: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ADAMTS4 MUTATED 0 0 1 0 2 0
ADAMTS4 WILD-TYPE 13 16 13 11 9 9
'ADAMTS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S7578.  Gene #727: 'ADAMTS4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ADAMTS4 MUTATED 0 0 0 1 0 0 1 0 1
ADAMTS4 WILD-TYPE 11 7 7 8 8 7 10 9 4
'TMEM50B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S7579.  Gene #728: 'TMEM50B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMEM50B MUTATED 2 2 2
TMEM50B WILD-TYPE 40 171 145
'TMEM50B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00834 (Fisher's exact test), Q value = 0.086

Table S7580.  Gene #728: 'TMEM50B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TMEM50B MUTATED 5 1 0
TMEM50B WILD-TYPE 57 72 75

Figure S2173.  Get High-res Image Gene #728: 'TMEM50B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TMEM50B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0658 (Fisher's exact test), Q value = 0.28

Table S7581.  Gene #728: 'TMEM50B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TMEM50B MUTATED 2 0 4
TMEM50B WILD-TYPE 68 120 96
'TMEM50B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S7582.  Gene #728: 'TMEM50B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TMEM50B MUTATED 2 0 0 0 1 2 0 0 1
TMEM50B WILD-TYPE 39 26 30 29 38 67 20 14 21
'TMEM50B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00583 (Fisher's exact test), Q value = 0.072

Table S7583.  Gene #728: 'TMEM50B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMEM50B MUTATED 0 3 3 0
TMEM50B WILD-TYPE 100 69 69 121

Figure S2174.  Get High-res Image Gene #728: 'TMEM50B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TMEM50B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0673 (Fisher's exact test), Q value = 0.28

Table S7584.  Gene #728: 'TMEM50B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMEM50B MUTATED 3 1 2 0 0
TMEM50B WILD-TYPE 56 74 72 119 38
'TMEM50B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S7585.  Gene #728: 'TMEM50B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMEM50B MUTATED 0 2 3 0 1
TMEM50B WILD-TYPE 51 74 58 71 94
'TMEM50B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 0.99

Table S7586.  Gene #728: 'TMEM50B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMEM50B MUTATED 1 2 0 1 1 0 0 0 1
TMEM50B WILD-TYPE 68 46 39 15 52 20 21 38 49
'TMEM50B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S7587.  Gene #728: 'TMEM50B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TMEM50B MUTATED 0 2 0 1 0 0
TMEM50B WILD-TYPE 13 14 14 10 11 9
'TMEM50B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.9

Table S7588.  Gene #728: 'TMEM50B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TMEM50B MUTATED 1 1 1 0 0 0 0 0 0
TMEM50B WILD-TYPE 10 6 6 9 8 7 11 9 5
'CDH22 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0746 (Fisher's exact test), Q value = 0.3

Table S7589.  Gene #729: 'CDH22 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CDH22 MUTATED 3 0 0 2 0
CDH22 WILD-TYPE 29 18 46 25 23
'CDH22 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S7590.  Gene #729: 'CDH22 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CDH22 MUTATED 2 2 1
CDH22 WILD-TYPE 41 65 35
'CDH22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S7591.  Gene #729: 'CDH22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CDH22 MUTATED 1 6 9
CDH22 WILD-TYPE 41 167 138
'CDH22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S7592.  Gene #729: 'CDH22 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CDH22 MUTATED 1 3 7
CDH22 WILD-TYPE 61 70 68
'CDH22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S7593.  Gene #729: 'CDH22 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CDH22 MUTATED 1 5 8
CDH22 WILD-TYPE 69 115 92
'CDH22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.51

Table S7594.  Gene #729: 'CDH22 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CDH22 MUTATED 2 0 0 4 1 6 1 0 0
CDH22 WILD-TYPE 39 26 30 25 38 63 19 14 22
'CDH22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.97

Table S7595.  Gene #729: 'CDH22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CDH22 MUTATED 3 5 3 5
CDH22 WILD-TYPE 97 67 69 116
'CDH22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0593 (Fisher's exact test), Q value = 0.26

Table S7596.  Gene #729: 'CDH22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CDH22 MUTATED 1 3 7 2 3
CDH22 WILD-TYPE 58 72 67 117 35
'CDH22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.99

Table S7597.  Gene #729: 'CDH22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CDH22 MUTATED 3 5 1 3 4
CDH22 WILD-TYPE 48 71 60 68 91
'CDH22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S7598.  Gene #729: 'CDH22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CDH22 MUTATED 5 1 1 1 4 1 0 3 0
CDH22 WILD-TYPE 64 47 38 15 49 19 21 35 50
'CDH22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7599.  Gene #729: 'CDH22 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CDH22 MUTATED 1 1 1 1 1 0
CDH22 WILD-TYPE 12 15 13 10 10 9
'CDH22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S7600.  Gene #729: 'CDH22 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CDH22 MUTATED 2 0 1 2 0 0 0 0 0
CDH22 WILD-TYPE 9 7 6 7 8 7 11 9 5
'LRRC37B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S7601.  Gene #730: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LRRC37B MUTATED 0 5 1
LRRC37B WILD-TYPE 42 168 146
'LRRC37B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.78

Table S7602.  Gene #730: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LRRC37B MUTATED 3 2 1
LRRC37B WILD-TYPE 59 71 74
'LRRC37B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.98

Table S7603.  Gene #730: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LRRC37B MUTATED 0 2 2
LRRC37B WILD-TYPE 70 118 98
'LRRC37B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.53

Table S7604.  Gene #730: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LRRC37B MUTATED 1 0 1 1 0 0 0 1 0
LRRC37B WILD-TYPE 40 26 29 28 39 69 20 13 22
'LRRC37B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 0.22

Table S7605.  Gene #730: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LRRC37B MUTATED 4 0 2 0
LRRC37B WILD-TYPE 96 72 70 121

Figure S2175.  Get High-res Image Gene #730: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LRRC37B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00603 (Fisher's exact test), Q value = 0.073

Table S7606.  Gene #730: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LRRC37B MUTATED 4 2 0 0 0
LRRC37B WILD-TYPE 55 73 74 119 38

Figure S2176.  Get High-res Image Gene #730: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LRRC37B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.094

Table S7607.  Gene #730: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LRRC37B MUTATED 0 2 4 0 0
LRRC37B WILD-TYPE 51 74 57 71 95

Figure S2177.  Get High-res Image Gene #730: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LRRC37B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S7608.  Gene #730: 'LRRC37B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LRRC37B MUTATED 1 3 1 0 1 0 0 0 0
LRRC37B WILD-TYPE 68 45 38 16 52 20 21 38 50
'C19ORF66 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0631 (Fisher's exact test), Q value = 0.27

Table S7609.  Gene #731: 'C19ORF66 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C19ORF66 MUTATED 0 0 4
C19ORF66 WILD-TYPE 42 173 143
'C19ORF66 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S7610.  Gene #731: 'C19ORF66 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C19ORF66 MUTATED 0 0 3
C19ORF66 WILD-TYPE 62 73 72
'C19ORF66 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.27

Table S7611.  Gene #731: 'C19ORF66 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C19ORF66 MUTATED 0 3 0 1
C19ORF66 WILD-TYPE 100 69 72 120
'C19ORF66 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S7612.  Gene #731: 'C19ORF66 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C19ORF66 MUTATED 0 0 3 0 1
C19ORF66 WILD-TYPE 59 75 71 119 37

Figure S2178.  Get High-res Image Gene #731: 'C19ORF66 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C19ORF66 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S7613.  Gene #731: 'C19ORF66 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C19ORF66 MUTATED 0 3 0 0 1
C19ORF66 WILD-TYPE 51 73 61 71 94
'C19ORF66 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00998 (Fisher's exact test), Q value = 0.094

Table S7614.  Gene #731: 'C19ORF66 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C19ORF66 MUTATED 1 0 0 2 0 0 1 0 0
C19ORF66 WILD-TYPE 68 48 39 14 53 20 20 38 50

Figure S2179.  Get High-res Image Gene #731: 'C19ORF66 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'WWC3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S7615.  Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
WWC3 MUTATED 4 0 0 2 0
WWC3 WILD-TYPE 28 18 46 25 23

Figure S2180.  Get High-res Image Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'WWC3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00665 (Fisher's exact test), Q value = 0.076

Table S7616.  Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
WWC3 MUTATED 5 0 1
WWC3 WILD-TYPE 38 67 35

Figure S2181.  Get High-res Image Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'WWC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0084

Table S7617.  Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WWC3 MUTATED 3 2 17
WWC3 WILD-TYPE 39 171 130

Figure S2182.  Get High-res Image Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WWC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S7618.  Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WWC3 MUTATED 4 3 9
WWC3 WILD-TYPE 58 70 66
'WWC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.27

Table S7619.  Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WWC3 MUTATED 2 5 11
WWC3 WILD-TYPE 68 115 89
'WWC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.73

Table S7620.  Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WWC3 MUTATED 2 1 1 1 1 9 2 1 0
WWC3 WILD-TYPE 39 25 29 28 38 60 18 13 22
'WWC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 0.32

Table S7621.  Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WWC3 MUTATED 4 9 2 7
WWC3 WILD-TYPE 96 63 70 114
'WWC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0016 (Fisher's exact test), Q value = 0.033

Table S7622.  Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WWC3 MUTATED 1 4 10 2 5
WWC3 WILD-TYPE 58 71 64 117 33

Figure S2183.  Get High-res Image Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WWC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.16

Table S7623.  Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WWC3 MUTATED 2 11 1 3 4
WWC3 WILD-TYPE 49 65 60 68 91

Figure S2184.  Get High-res Image Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'WWC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S7624.  Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WWC3 MUTATED 4 1 0 7 2 2 2 2 1
WWC3 WILD-TYPE 65 47 39 9 51 18 19 36 49

Figure S2185.  Get High-res Image Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'WWC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S7625.  Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
WWC3 MUTATED 2 1 0 0 2 0
WWC3 WILD-TYPE 11 15 14 11 9 9
'WWC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S7626.  Gene #732: 'WWC3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
WWC3 MUTATED 0 0 0 2 1 0 1 0 1
WWC3 WILD-TYPE 11 7 7 7 7 7 10 9 4
'ZBTB24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S7627.  Gene #733: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZBTB24 MUTATED 0 2 6
ZBTB24 WILD-TYPE 42 171 141
'ZBTB24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S7628.  Gene #733: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZBTB24 MUTATED 3 1 2
ZBTB24 WILD-TYPE 59 72 73
'ZBTB24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.91

Table S7629.  Gene #733: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZBTB24 MUTATED 2 2 4
ZBTB24 WILD-TYPE 68 118 96
'ZBTB24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S7630.  Gene #733: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZBTB24 MUTATED 1 0 2 0 1 3 0 0 1
ZBTB24 WILD-TYPE 40 26 28 29 38 66 20 14 21
'ZBTB24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S7631.  Gene #733: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZBTB24 MUTATED 1 3 2 2
ZBTB24 WILD-TYPE 99 69 70 119
'ZBTB24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S7632.  Gene #733: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZBTB24 MUTATED 1 1 4 1 1
ZBTB24 WILD-TYPE 58 74 70 118 37
'ZBTB24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.99

Table S7633.  Gene #733: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZBTB24 MUTATED 0 3 2 1 2
ZBTB24 WILD-TYPE 51 73 59 70 93
'ZBTB24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S7634.  Gene #733: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZBTB24 MUTATED 1 2 1 2 0 1 0 1 0
ZBTB24 WILD-TYPE 68 46 38 14 53 19 21 37 50
'ZBTB24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0741 (Fisher's exact test), Q value = 0.3

Table S7635.  Gene #733: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZBTB24 MUTATED 0 0 0 1 1 2
ZBTB24 WILD-TYPE 13 16 14 10 10 7
'ZBTB24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S7636.  Gene #733: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZBTB24 MUTATED 1 0 0 0 0 0 2 1 0
ZBTB24 WILD-TYPE 10 7 7 9 8 7 9 8 5
'TMEM48 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.16

Table S7637.  Gene #734: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMEM48 MUTATED 1 1 8
TMEM48 WILD-TYPE 41 172 139

Figure S2186.  Get High-res Image Gene #734: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TMEM48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S7638.  Gene #734: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TMEM48 MUTATED 4 1 3
TMEM48 WILD-TYPE 58 72 72
'TMEM48 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S7639.  Gene #734: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TMEM48 MUTATED 1 3 5
TMEM48 WILD-TYPE 69 117 95
'TMEM48 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S7640.  Gene #734: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TMEM48 MUTATED 1 1 0 1 1 3 2 0 0
TMEM48 WILD-TYPE 40 25 30 28 38 66 18 14 22
'TMEM48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S7641.  Gene #734: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMEM48 MUTATED 1 5 2 2
TMEM48 WILD-TYPE 99 67 70 119
'TMEM48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S7642.  Gene #734: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMEM48 MUTATED 1 2 4 2 1
TMEM48 WILD-TYPE 58 73 70 117 37
'TMEM48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S7643.  Gene #734: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMEM48 MUTATED 1 3 1 1 4
TMEM48 WILD-TYPE 50 73 60 70 91
'TMEM48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S7644.  Gene #734: 'TMEM48 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMEM48 MUTATED 1 2 0 2 1 0 0 2 2
TMEM48 WILD-TYPE 68 46 39 14 52 20 21 36 48
'EXPH5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00758 (Fisher's exact test), Q value = 0.081

Table S7645.  Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EXPH5 MUTATED 5 0 0 1 0
EXPH5 WILD-TYPE 27 18 46 26 23

Figure S2187.  Get High-res Image Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EXPH5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00676 (Fisher's exact test), Q value = 0.077

Table S7646.  Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EXPH5 MUTATED 5 0 1
EXPH5 WILD-TYPE 38 67 35

Figure S2188.  Get High-res Image Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EXPH5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00905 (Fisher's exact test), Q value = 0.089

Table S7647.  Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EXPH5 MUTATED 0 6 15
EXPH5 WILD-TYPE 42 167 132

Figure S2189.  Get High-res Image Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EXPH5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S7648.  Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EXPH5 MUTATED 9 2 3
EXPH5 WILD-TYPE 53 71 72

Figure S2190.  Get High-res Image Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'EXPH5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0408 (Fisher's exact test), Q value = 0.21

Table S7649.  Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EXPH5 MUTATED 2 4 11
EXPH5 WILD-TYPE 68 116 89

Figure S2191.  Get High-res Image Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'EXPH5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0317 (Fisher's exact test), Q value = 0.19

Table S7650.  Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EXPH5 MUTATED 2 0 1 1 0 11 0 1 1
EXPH5 WILD-TYPE 39 26 29 28 39 58 20 13 21

Figure S2192.  Get High-res Image Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'EXPH5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S7651.  Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EXPH5 MUTATED 3 5 6 7
EXPH5 WILD-TYPE 97 67 66 114
'EXPH5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S7652.  Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EXPH5 MUTATED 5 1 8 1 6
EXPH5 WILD-TYPE 54 74 66 118 32

Figure S2193.  Get High-res Image Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EXPH5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.62

Table S7653.  Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EXPH5 MUTATED 1 6 6 2 5
EXPH5 WILD-TYPE 50 70 55 69 90
'EXPH5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S7654.  Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EXPH5 MUTATED 5 4 0 2 4 0 2 3 0
EXPH5 WILD-TYPE 64 44 39 14 49 20 19 35 50
'EXPH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.97

Table S7655.  Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EXPH5 MUTATED 1 1 3 1 2 0
EXPH5 WILD-TYPE 12 15 11 10 9 9
'EXPH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 0.96

Table S7656.  Gene #735: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EXPH5 MUTATED 2 0 0 1 1 2 2 0 0
EXPH5 WILD-TYPE 9 7 7 8 7 5 9 9 5
'MARVELD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00049 (Fisher's exact test), Q value = 0.016

Table S7657.  Gene #736: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MARVELD2 MUTATED 0 0 10
MARVELD2 WILD-TYPE 42 173 137

Figure S2194.  Get High-res Image Gene #736: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MARVELD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.1

Table S7658.  Gene #736: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MARVELD2 MUTATED 6 0 2
MARVELD2 WILD-TYPE 56 73 73

Figure S2195.  Get High-res Image Gene #736: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MARVELD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S7659.  Gene #736: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MARVELD2 MUTATED 1 2 6
MARVELD2 WILD-TYPE 69 118 94
'MARVELD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S7660.  Gene #736: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MARVELD2 MUTATED 0 0 1 0 1 5 1 1 0
MARVELD2 WILD-TYPE 41 26 29 29 38 64 19 13 22
'MARVELD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00715 (Fisher's exact test), Q value = 0.079

Table S7661.  Gene #736: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MARVELD2 MUTATED 0 6 2 2
MARVELD2 WILD-TYPE 100 66 70 119

Figure S2196.  Get High-res Image Gene #736: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MARVELD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00043 (Fisher's exact test), Q value = 0.015

Table S7662.  Gene #736: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MARVELD2 MUTATED 0 1 7 0 2
MARVELD2 WILD-TYPE 59 74 67 119 36

Figure S2197.  Get High-res Image Gene #736: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MARVELD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00194 (Fisher's exact test), Q value = 0.037

Table S7663.  Gene #736: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MARVELD2 MUTATED 0 7 0 0 2
MARVELD2 WILD-TYPE 51 69 61 71 93

Figure S2198.  Get High-res Image Gene #736: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MARVELD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00385 (Fisher's exact test), Q value = 0.055

Table S7664.  Gene #736: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MARVELD2 MUTATED 1 2 0 4 1 0 0 0 1
MARVELD2 WILD-TYPE 68 46 39 12 52 20 21 38 49

Figure S2199.  Get High-res Image Gene #736: 'MARVELD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GDE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S7665.  Gene #737: 'GDE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GDE1 MUTATED 0 2 3
GDE1 WILD-TYPE 42 171 144
'GDE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S7666.  Gene #737: 'GDE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GDE1 MUTATED 2 2 1
GDE1 WILD-TYPE 60 71 74
'GDE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S7667.  Gene #737: 'GDE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GDE1 MUTATED 1 0 3
GDE1 WILD-TYPE 69 120 97
'GDE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 0.89

Table S7668.  Gene #737: 'GDE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GDE1 MUTATED 2 0 0 0 0 1 0 0 1
GDE1 WILD-TYPE 39 26 30 29 39 68 20 14 21
'GDE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S7669.  Gene #737: 'GDE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GDE1 MUTATED 1 2 2 0
GDE1 WILD-TYPE 99 70 70 121
'GDE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S7670.  Gene #737: 'GDE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GDE1 MUTATED 2 2 1 0 0
GDE1 WILD-TYPE 57 73 73 119 38
'GDE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.93

Table S7671.  Gene #737: 'GDE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GDE1 MUTATED 1 1 2 0 1
GDE1 WILD-TYPE 50 75 59 71 94
'GDE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S7672.  Gene #737: 'GDE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GDE1 MUTATED 2 2 0 0 0 0 0 0 1
GDE1 WILD-TYPE 67 46 39 16 53 20 21 38 49
'ZNF721 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 0.18

Table S7673.  Gene #738: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF721 MUTATED 4 0 0 2 0
ZNF721 WILD-TYPE 28 18 46 25 23

Figure S2200.  Get High-res Image Gene #738: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF721 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S7674.  Gene #738: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF721 MUTATED 4 1 1
ZNF721 WILD-TYPE 39 66 35
'ZNF721 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0098

Table S7675.  Gene #738: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF721 MUTATED 0 1 13
ZNF721 WILD-TYPE 42 172 134

Figure S2201.  Get High-res Image Gene #738: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF721 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.14

Table S7676.  Gene #738: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF721 MUTATED 6 1 1
ZNF721 WILD-TYPE 56 72 74

Figure S2202.  Get High-res Image Gene #738: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZNF721 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00747 (Fisher's exact test), Q value = 0.081

Table S7677.  Gene #738: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF721 MUTATED 1 2 10
ZNF721 WILD-TYPE 69 118 90

Figure S2203.  Get High-res Image Gene #738: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZNF721 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S7678.  Gene #738: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF721 MUTATED 1 1 1 0 1 7 1 1 0
ZNF721 WILD-TYPE 40 25 29 29 38 62 19 13 22
'ZNF721 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.56

Table S7679.  Gene #738: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF721 MUTATED 1 4 3 7
ZNF721 WILD-TYPE 99 68 69 114
'ZNF721 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S7680.  Gene #738: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF721 MUTATED 2 1 4 4 4
ZNF721 WILD-TYPE 57 74 70 115 34
'ZNF721 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.74

Table S7681.  Gene #738: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF721 MUTATED 1 3 2 1 7
ZNF721 WILD-TYPE 50 73 59 70 88
'ZNF721 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.62

Table S7682.  Gene #738: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF721 MUTATED 1 3 0 1 2 1 0 4 2
ZNF721 WILD-TYPE 68 45 39 15 51 19 21 34 48
'ZNF721 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S7683.  Gene #738: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF721 MUTATED 0 0 1 0 2 0
ZNF721 WILD-TYPE 13 16 13 11 9 9
'ZNF721 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S7684.  Gene #738: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF721 MUTATED 0 0 0 1 1 0 1 0 0
ZNF721 WILD-TYPE 11 7 7 8 7 7 10 9 5
'PAX6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00893 (Fisher's exact test), Q value = 0.089

Table S7685.  Gene #739: 'PAX6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PAX6 MUTATED 4 0 0 0 0
PAX6 WILD-TYPE 28 18 46 27 23

Figure S2204.  Get High-res Image Gene #739: 'PAX6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PAX6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00936 (Fisher's exact test), Q value = 0.091

Table S7686.  Gene #739: 'PAX6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PAX6 MUTATED 4 0 0
PAX6 WILD-TYPE 39 67 36

Figure S2205.  Get High-res Image Gene #739: 'PAX6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S7687.  Gene #739: 'PAX6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PAX6 MUTATED 2 2 10
PAX6 WILD-TYPE 40 171 137

Figure S2206.  Get High-res Image Gene #739: 'PAX6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PAX6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S7688.  Gene #739: 'PAX6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PAX6 MUTATED 5 1 4
PAX6 WILD-TYPE 57 72 71
'PAX6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S7689.  Gene #739: 'PAX6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PAX6 MUTATED 1 4 8
PAX6 WILD-TYPE 69 116 92
'PAX6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S7690.  Gene #739: 'PAX6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PAX6 MUTATED 3 1 0 0 1 8 0 0 0
PAX6 WILD-TYPE 38 25 30 29 38 61 20 14 22
'PAX6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 0.34

Table S7691.  Gene #739: 'PAX6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PAX6 MUTATED 1 6 3 4
PAX6 WILD-TYPE 99 66 69 117
'PAX6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0328 (Fisher's exact test), Q value = 0.19

Table S7692.  Gene #739: 'PAX6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PAX6 MUTATED 2 2 5 1 4
PAX6 WILD-TYPE 57 73 69 118 34

Figure S2207.  Get High-res Image Gene #739: 'PAX6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.77

Table S7693.  Gene #739: 'PAX6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PAX6 MUTATED 0 5 2 2 4
PAX6 WILD-TYPE 51 71 59 69 91
'PAX6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S7694.  Gene #739: 'PAX6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PAX6 MUTATED 3 1 0 2 2 1 0 3 1
PAX6 WILD-TYPE 66 47 39 14 51 19 21 35 49
'PAX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S7695.  Gene #739: 'PAX6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PAX6 MUTATED 1 0 1 0 1 0
PAX6 WILD-TYPE 12 16 13 11 10 9
'PAX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S7696.  Gene #739: 'PAX6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PAX6 MUTATED 0 0 0 1 1 1 0 0 0
PAX6 WILD-TYPE 11 7 7 8 7 6 11 9 5
'ENPP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7697.  Gene #740: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ENPP1 MUTATED 1 0 1 1 0
ENPP1 WILD-TYPE 31 18 45 26 23
'ENPP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7698.  Gene #740: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ENPP1 MUTATED 1 1 1
ENPP1 WILD-TYPE 42 66 35
'ENPP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S7699.  Gene #740: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ENPP1 MUTATED 1 5 8
ENPP1 WILD-TYPE 41 168 139
'ENPP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S7700.  Gene #740: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ENPP1 MUTATED 3 3 5
ENPP1 WILD-TYPE 59 70 70
'ENPP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S7701.  Gene #740: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ENPP1 MUTATED 1 6 6
ENPP1 WILD-TYPE 69 114 94
'ENPP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S7702.  Gene #740: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ENPP1 MUTATED 1 0 1 3 0 5 1 1 1
ENPP1 WILD-TYPE 40 26 29 26 39 64 19 13 21
'ENPP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S7703.  Gene #740: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ENPP1 MUTATED 2 5 4 3
ENPP1 WILD-TYPE 98 67 68 118
'ENPP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S7704.  Gene #740: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ENPP1 MUTATED 2 4 5 2 1
ENPP1 WILD-TYPE 57 71 69 117 37
'ENPP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.77

Table S7705.  Gene #740: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ENPP1 MUTATED 3 5 1 2 2
ENPP1 WILD-TYPE 48 71 60 69 93
'ENPP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 0.96

Table S7706.  Gene #740: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ENPP1 MUTATED 2 3 1 2 2 1 0 1 1
ENPP1 WILD-TYPE 67 45 38 14 51 19 21 37 49
'ENPP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S7707.  Gene #740: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ENPP1 MUTATED 1 0 0 0 2 0
ENPP1 WILD-TYPE 12 16 14 11 9 9
'ENPP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S7708.  Gene #740: 'ENPP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ENPP1 MUTATED 0 0 0 1 1 0 1 0 0
ENPP1 WILD-TYPE 11 7 7 8 7 7 10 9 5
'CHM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.66

Table S7709.  Gene #741: 'CHM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CHM MUTATED 1 1 2
CHM WILD-TYPE 41 172 145
'CHM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.98

Table S7710.  Gene #741: 'CHM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CHM MUTATED 2 1 1
CHM WILD-TYPE 60 72 74
'CHM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S7711.  Gene #741: 'CHM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CHM MUTATED 1 0 2
CHM WILD-TYPE 69 120 98
'CHM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S7712.  Gene #741: 'CHM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CHM MUTATED 1 0 0 0 0 1 0 0 1
CHM WILD-TYPE 40 26 30 29 39 68 20 14 21
'CHM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S7713.  Gene #741: 'CHM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CHM MUTATED 2 2 0 0
CHM WILD-TYPE 98 70 72 121
'CHM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S7714.  Gene #741: 'CHM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CHM MUTATED 1 1 2 0 0
CHM WILD-TYPE 58 74 72 119 38
'CHM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S7715.  Gene #741: 'CHM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CHM MUTATED 0 2 1 1 0
CHM WILD-TYPE 51 74 60 70 95
'CHM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S7716.  Gene #741: 'CHM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CHM MUTATED 3 0 0 0 1 0 0 0 0
CHM WILD-TYPE 66 48 39 16 52 20 21 38 50
'CHM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S7717.  Gene #741: 'CHM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CHM MUTATED 0 1 0 1 0 1
CHM WILD-TYPE 13 15 14 10 11 8
'CHM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S7718.  Gene #741: 'CHM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CHM MUTATED 1 0 0 0 0 1 1 0 0
CHM WILD-TYPE 10 7 7 9 8 6 10 9 5
'THAP9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S7719.  Gene #742: 'THAP9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
THAP9 MUTATED 3 0 1 2 0
THAP9 WILD-TYPE 29 18 45 25 23
'THAP9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0869 (Fisher's exact test), Q value = 0.32

Table S7720.  Gene #742: 'THAP9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
THAP9 MUTATED 4 2 0
THAP9 WILD-TYPE 39 65 36
'THAP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S7721.  Gene #742: 'THAP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
THAP9 MUTATED 1 3 8
THAP9 WILD-TYPE 41 170 139
'THAP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S7722.  Gene #742: 'THAP9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
THAP9 MUTATED 1 1 4
THAP9 WILD-TYPE 61 72 71
'THAP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S7723.  Gene #742: 'THAP9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
THAP9 MUTATED 2 5 3
THAP9 WILD-TYPE 68 115 97
'THAP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.46

Table S7724.  Gene #742: 'THAP9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
THAP9 MUTATED 0 0 2 2 2 2 0 2 0
THAP9 WILD-TYPE 41 26 28 27 37 67 20 12 22
'THAP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S7725.  Gene #742: 'THAP9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
THAP9 MUTATED 2 4 0 6
THAP9 WILD-TYPE 98 68 72 115
'THAP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0534 (Fisher's exact test), Q value = 0.25

Table S7726.  Gene #742: 'THAP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
THAP9 MUTATED 0 3 3 2 4
THAP9 WILD-TYPE 59 72 71 117 34
'THAP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S7727.  Gene #742: 'THAP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
THAP9 MUTATED 3 3 0 0 4
THAP9 WILD-TYPE 48 73 61 71 91
'THAP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S7728.  Gene #742: 'THAP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
THAP9 MUTATED 2 0 1 1 1 2 1 2 0
THAP9 WILD-TYPE 67 48 38 15 52 18 20 36 50
'C1QL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S7729.  Gene #743: 'C1QL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C1QL3 MUTATED 0 3 1
C1QL3 WILD-TYPE 42 170 146
'C1QL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S7730.  Gene #743: 'C1QL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C1QL3 MUTATED 0 2 2
C1QL3 WILD-TYPE 62 71 73
'C1QL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S7731.  Gene #743: 'C1QL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C1QL3 MUTATED 0 3 1
C1QL3 WILD-TYPE 70 117 99
'C1QL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S7732.  Gene #743: 'C1QL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C1QL3 MUTATED 2 0 0 1 0 1 0 0 0
C1QL3 WILD-TYPE 39 26 30 28 39 68 20 14 22
'C1QL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S7733.  Gene #743: 'C1QL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C1QL3 MUTATED 2 1 1 0
C1QL3 WILD-TYPE 98 71 71 121
'C1QL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S7734.  Gene #743: 'C1QL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C1QL3 MUTATED 1 2 1 0 0
C1QL3 WILD-TYPE 58 73 73 119 38
'C1QL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S7735.  Gene #743: 'C1QL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C1QL3 MUTATED 1 2 1 0 0
C1QL3 WILD-TYPE 50 74 60 71 95
'C1QL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S7736.  Gene #743: 'C1QL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C1QL3 MUTATED 2 0 2 0 0 0 0 0 0
C1QL3 WILD-TYPE 67 48 37 16 53 20 21 38 50
'HCRTR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S7737.  Gene #744: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HCRTR2 MUTATED 2 0 0 1 0
HCRTR2 WILD-TYPE 30 18 46 26 23
'HCRTR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S7738.  Gene #744: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HCRTR2 MUTATED 2 1 0
HCRTR2 WILD-TYPE 41 66 36
'HCRTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0638 (Fisher's exact test), Q value = 0.27

Table S7739.  Gene #744: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HCRTR2 MUTATED 1 0 4
HCRTR2 WILD-TYPE 41 173 143
'HCRTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 0.2

Table S7740.  Gene #744: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HCRTR2 MUTATED 0 0 4
HCRTR2 WILD-TYPE 62 73 71

Figure S2208.  Get High-res Image Gene #744: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HCRTR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S7741.  Gene #744: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HCRTR2 MUTATED 0 5 1
HCRTR2 WILD-TYPE 70 115 99
'HCRTR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.095

Table S7742.  Gene #744: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HCRTR2 MUTATED 0 1 0 2 0 0 2 1 0
HCRTR2 WILD-TYPE 41 25 30 27 39 69 18 13 22

Figure S2209.  Get High-res Image Gene #744: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'HCRTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00715 (Fisher's exact test), Q value = 0.079

Table S7743.  Gene #744: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HCRTR2 MUTATED 0 5 0 2
HCRTR2 WILD-TYPE 100 67 72 119

Figure S2210.  Get High-res Image Gene #744: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HCRTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S7744.  Gene #744: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HCRTR2 MUTATED 0 0 3 2 2
HCRTR2 WILD-TYPE 59 75 71 117 36
'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S7745.  Gene #744: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HCRTR2 MUTATED 1 2 0 0 4
HCRTR2 WILD-TYPE 50 74 61 71 91
'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00475 (Fisher's exact test), Q value = 0.064

Table S7746.  Gene #744: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HCRTR2 MUTATED 0 1 0 1 0 2 0 3 0
HCRTR2 WILD-TYPE 69 47 39 15 53 18 21 35 50

Figure S2211.  Get High-res Image Gene #744: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C9ORF71 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 0.27

Table S7747.  Gene #745: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C9ORF71 MUTATED 0 0 4
C9ORF71 WILD-TYPE 42 173 143
'C9ORF71 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S7748.  Gene #745: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C9ORF71 MUTATED 2 0 2
C9ORF71 WILD-TYPE 60 73 73
'C9ORF71 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S7749.  Gene #745: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C9ORF71 MUTATED 0 0 4
C9ORF71 WILD-TYPE 70 120 96

Figure S2212.  Get High-res Image Gene #745: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C9ORF71 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S7750.  Gene #745: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C9ORF71 MUTATED 1 0 0 0 0 3 0 0 0
C9ORF71 WILD-TYPE 40 26 30 29 39 66 20 14 22
'C9ORF71 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.045 (Fisher's exact test), Q value = 0.23

Table S7751.  Gene #745: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C9ORF71 MUTATED 0 2 2 0
C9ORF71 WILD-TYPE 100 70 70 121

Figure S2213.  Get High-res Image Gene #745: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C9ORF71 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0438 (Fisher's exact test), Q value = 0.22

Table S7752.  Gene #745: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C9ORF71 MUTATED 1 0 3 0 0
C9ORF71 WILD-TYPE 58 75 71 119 38

Figure S2214.  Get High-res Image Gene #745: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C9ORF71 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 0.29

Table S7753.  Gene #745: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C9ORF71 MUTATED 0 3 1 0 0
C9ORF71 WILD-TYPE 51 73 60 71 95
'C9ORF71 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S7754.  Gene #745: 'C9ORF71 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C9ORF71 MUTATED 2 1 0 1 0 0 0 0 0
C9ORF71 WILD-TYPE 67 47 39 15 53 20 21 38 50
'RIMBP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S7755.  Gene #746: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RIMBP3 MUTATED 0 2 4
RIMBP3 WILD-TYPE 42 171 143
'RIMBP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7756.  Gene #746: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RIMBP3 MUTATED 1 2 2
RIMBP3 WILD-TYPE 61 71 73
'RIMBP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S7757.  Gene #746: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RIMBP3 MUTATED 2 2 1
RIMBP3 WILD-TYPE 68 118 99
'RIMBP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.9

Table S7758.  Gene #746: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RIMBP3 MUTATED 2 0 1 0 0 1 1 0 0
RIMBP3 WILD-TYPE 39 26 29 29 39 68 19 14 22
'RIMBP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S7759.  Gene #746: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RIMBP3 MUTATED 2 1 2 1
RIMBP3 WILD-TYPE 98 71 70 120
'RIMBP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S7760.  Gene #746: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RIMBP3 MUTATED 1 2 2 1 0
RIMBP3 WILD-TYPE 58 73 72 118 38
'RIMBP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S7761.  Gene #746: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RIMBP3 MUTATED 2 1 2 0 1
RIMBP3 WILD-TYPE 49 75 59 71 94
'RIMBP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0374 (Fisher's exact test), Q value = 0.21

Table S7762.  Gene #746: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RIMBP3 MUTATED 1 3 0 0 0 2 0 0 0
RIMBP3 WILD-TYPE 68 45 39 16 53 18 21 38 50

Figure S2215.  Get High-res Image Gene #746: 'RIMBP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HELQ MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S7763.  Gene #747: 'HELQ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HELQ MUTATED 2 0 0 2 0
HELQ WILD-TYPE 30 18 46 25 23
'HELQ MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S7764.  Gene #747: 'HELQ MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HELQ MUTATED 3 1 0
HELQ WILD-TYPE 40 66 36
'HELQ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.098

Table S7765.  Gene #747: 'HELQ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HELQ MUTATED 2 3 13
HELQ WILD-TYPE 40 170 134

Figure S2216.  Get High-res Image Gene #747: 'HELQ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HELQ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7766.  Gene #747: 'HELQ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HELQ MUTATED 4 5 5
HELQ WILD-TYPE 58 68 70
'HELQ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S7767.  Gene #747: 'HELQ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HELQ MUTATED 2 7 5
HELQ WILD-TYPE 68 113 95
'HELQ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S7768.  Gene #747: 'HELQ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HELQ MUTATED 3 3 1 3 0 3 0 0 1
HELQ WILD-TYPE 38 23 29 26 39 66 20 14 21
'HELQ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S7769.  Gene #747: 'HELQ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HELQ MUTATED 4 5 4 5
HELQ WILD-TYPE 96 67 68 116
'HELQ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S7770.  Gene #747: 'HELQ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HELQ MUTATED 3 4 6 2 3
HELQ WILD-TYPE 56 71 68 117 35
'HELQ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S7771.  Gene #747: 'HELQ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HELQ MUTATED 2 7 3 1 4
HELQ WILD-TYPE 49 69 58 70 91
'HELQ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00517 (Fisher's exact test), Q value = 0.067

Table S7772.  Gene #747: 'HELQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HELQ MUTATED 2 5 0 3 0 3 0 2 2
HELQ WILD-TYPE 67 43 39 13 53 17 21 36 48

Figure S2217.  Get High-res Image Gene #747: 'HELQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HELQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S7773.  Gene #747: 'HELQ MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HELQ MUTATED 0 1 1 1 2 0
HELQ WILD-TYPE 13 15 13 10 9 9
'HELQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S7774.  Gene #747: 'HELQ MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HELQ MUTATED 0 0 1 2 0 0 2 0 0
HELQ WILD-TYPE 11 7 6 7 8 7 9 9 5
'VPS13B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0455 (Fisher's exact test), Q value = 0.23

Table S7775.  Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
VPS13B MUTATED 6 0 1 3 3
VPS13B WILD-TYPE 26 18 45 24 20

Figure S2218.  Get High-res Image Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'VPS13B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0965 (Fisher's exact test), Q value = 0.34

Table S7776.  Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
VPS13B MUTATED 7 3 3
VPS13B WILD-TYPE 36 64 33
'VPS13B MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S7777.  Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
VPS13B MUTATED 3 13 35
VPS13B WILD-TYPE 39 160 112

Figure S2219.  Get High-res Image Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VPS13B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.011

Table S7778.  Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
VPS13B MUTATED 16 3 18
VPS13B WILD-TYPE 46 70 57

Figure S2220.  Get High-res Image Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'VPS13B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0063 (Fisher's exact test), Q value = 0.074

Table S7779.  Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
VPS13B MUTATED 4 16 23
VPS13B WILD-TYPE 66 104 77

Figure S2221.  Get High-res Image Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'VPS13B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.61

Table S7780.  Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
VPS13B MUTATED 5 1 4 3 4 16 5 1 4
VPS13B WILD-TYPE 36 25 26 26 35 53 15 13 18
'VPS13B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.01

Table S7781.  Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
VPS13B MUTATED 4 17 16 15
VPS13B WILD-TYPE 96 55 56 106

Figure S2222.  Get High-res Image Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'VPS13B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00059 (Fisher's exact test), Q value = 0.018

Table S7782.  Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
VPS13B MUTATED 8 7 21 8 8
VPS13B WILD-TYPE 51 68 53 111 30

Figure S2223.  Get High-res Image Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VPS13B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00166 (Fisher's exact test), Q value = 0.034

Table S7783.  Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
VPS13B MUTATED 6 21 7 3 14
VPS13B WILD-TYPE 45 55 54 68 81

Figure S2224.  Get High-res Image Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'VPS13B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00819 (Fisher's exact test), Q value = 0.085

Table S7784.  Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
VPS13B MUTATED 7 11 2 7 7 2 2 9 4
VPS13B WILD-TYPE 62 37 37 9 46 18 19 29 46

Figure S2225.  Get High-res Image Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'VPS13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0736 (Fisher's exact test), Q value = 0.29

Table S7785.  Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
VPS13B MUTATED 0 4 3 0 4 1
VPS13B WILD-TYPE 13 12 11 11 7 8
'VPS13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S7786.  Gene #748: 'VPS13B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
VPS13B MUTATED 3 1 1 2 1 2 2 0 0
VPS13B WILD-TYPE 8 6 6 7 7 5 9 9 5
'ZNF620 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00605 (Fisher's exact test), Q value = 0.073

Table S7787.  Gene #749: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF620 MUTATED 1 0 7
ZNF620 WILD-TYPE 41 173 140

Figure S2226.  Get High-res Image Gene #749: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF620 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S7788.  Gene #749: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF620 MUTATED 2 1 2
ZNF620 WILD-TYPE 60 72 73
'ZNF620 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.91

Table S7789.  Gene #749: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF620 MUTATED 2 2 4
ZNF620 WILD-TYPE 68 118 96
'ZNF620 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S7790.  Gene #749: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF620 MUTATED 3 0 1 0 1 2 1 0 0
ZNF620 WILD-TYPE 38 26 29 29 38 67 19 14 22
'ZNF620 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.14

Table S7791.  Gene #749: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF620 MUTATED 0 5 1 2
ZNF620 WILD-TYPE 100 67 71 119

Figure S2227.  Get High-res Image Gene #749: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF620 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0776 (Fisher's exact test), Q value = 0.3

Table S7792.  Gene #749: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF620 MUTATED 1 2 3 0 2
ZNF620 WILD-TYPE 58 73 71 119 36
'ZNF620 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S7793.  Gene #749: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF620 MUTATED 0 4 1 0 3
ZNF620 WILD-TYPE 51 72 60 71 92
'ZNF620 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S7794.  Gene #749: 'ZNF620 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF620 MUTATED 2 1 0 1 1 0 0 2 1
ZNF620 WILD-TYPE 67 47 39 15 52 20 21 36 49
'ZNF570 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S7795.  Gene #750: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF570 MUTATED 2 1 0 0 0
ZNF570 WILD-TYPE 30 17 46 27 23
'ZNF570 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.79

Table S7796.  Gene #750: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF570 MUTATED 2 1 0
ZNF570 WILD-TYPE 41 66 36
'ZNF570 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S7797.  Gene #750: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF570 MUTATED 0 2 6
ZNF570 WILD-TYPE 42 171 141
'ZNF570 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S7798.  Gene #750: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF570 MUTATED 1 2 4
ZNF570 WILD-TYPE 61 71 71
'ZNF570 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S7799.  Gene #750: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF570 MUTATED 1 2 6
ZNF570 WILD-TYPE 69 118 94
'ZNF570 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S7800.  Gene #750: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF570 MUTATED 1 0 0 1 1 4 1 1 0
ZNF570 WILD-TYPE 40 26 30 28 38 65 19 13 22
'ZNF570 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S7801.  Gene #750: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF570 MUTATED 1 4 2 2
ZNF570 WILD-TYPE 99 68 70 119
'ZNF570 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0216 (Fisher's exact test), Q value = 0.15

Table S7802.  Gene #750: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF570 MUTATED 1 0 5 1 2
ZNF570 WILD-TYPE 58 75 69 118 36

Figure S2228.  Get High-res Image Gene #750: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF570 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S7803.  Gene #750: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF570 MUTATED 0 5 2 1 1
ZNF570 WILD-TYPE 51 71 59 70 94
'ZNF570 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00312 (Fisher's exact test), Q value = 0.049

Table S7804.  Gene #750: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF570 MUTATED 1 2 0 3 0 0 2 1 0
ZNF570 WILD-TYPE 68 46 39 13 53 20 19 37 50

Figure S2229.  Get High-res Image Gene #750: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AP1G2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.011

Table S7805.  Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AP1G2 MUTATED 6 0 0 0 0
AP1G2 WILD-TYPE 26 18 46 27 23

Figure S2230.  Get High-res Image Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AP1G2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00075 (Fisher's exact test), Q value = 0.021

Table S7806.  Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AP1G2 MUTATED 6 0 0
AP1G2 WILD-TYPE 37 67 36

Figure S2231.  Get High-res Image Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'AP1G2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00308 (Fisher's exact test), Q value = 0.048

Table S7807.  Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AP1G2 MUTATED 1 1 11
AP1G2 WILD-TYPE 41 172 136

Figure S2232.  Get High-res Image Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AP1G2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S7808.  Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AP1G2 MUTATED 3 0 3
AP1G2 WILD-TYPE 59 73 72
'AP1G2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0484 (Fisher's exact test), Q value = 0.24

Table S7809.  Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AP1G2 MUTATED 2 1 7
AP1G2 WILD-TYPE 68 119 93

Figure S2233.  Get High-res Image Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'AP1G2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S7810.  Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AP1G2 MUTATED 0 1 0 2 1 5 1 0 0
AP1G2 WILD-TYPE 41 25 30 27 38 64 19 14 22
'AP1G2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.2

Table S7811.  Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AP1G2 MUTATED 0 2 5 6
AP1G2 WILD-TYPE 100 70 67 115

Figure S2234.  Get High-res Image Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'AP1G2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0841 (Fisher's exact test), Q value = 0.31

Table S7812.  Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AP1G2 MUTATED 2 1 4 2 4
AP1G2 WILD-TYPE 57 74 70 117 34
'AP1G2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S7813.  Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AP1G2 MUTATED 0 4 1 1 6
AP1G2 WILD-TYPE 51 72 60 70 89
'AP1G2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S7814.  Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AP1G2 MUTATED 1 2 0 0 3 1 2 3 0
AP1G2 WILD-TYPE 68 46 39 16 50 19 19 35 50
'AP1G2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.95

Table S7815.  Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AP1G2 MUTATED 0 0 1 1 1 0
AP1G2 WILD-TYPE 13 16 13 10 10 9
'AP1G2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.99

Table S7816.  Gene #751: 'AP1G2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AP1G2 MUTATED 0 0 0 0 1 1 1 0 0
AP1G2 WILD-TYPE 11 7 7 9 7 6 10 9 5
'SLC22A16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.018

Table S7817.  Gene #752: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC22A16 MUTATED 0 1 12
SLC22A16 WILD-TYPE 42 172 135

Figure S2235.  Get High-res Image Gene #752: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC22A16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.21

Table S7818.  Gene #752: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC22A16 MUTATED 4 0 6
SLC22A16 WILD-TYPE 58 73 69

Figure S2236.  Get High-res Image Gene #752: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SLC22A16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.56

Table S7819.  Gene #752: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC22A16 MUTATED 2 2 6
SLC22A16 WILD-TYPE 68 118 94
'SLC22A16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S7820.  Gene #752: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC22A16 MUTATED 0 2 0 1 1 6 0 0 0
SLC22A16 WILD-TYPE 41 24 30 28 38 63 20 14 22
'SLC22A16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.096

Table S7821.  Gene #752: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC22A16 MUTATED 0 6 4 3
SLC22A16 WILD-TYPE 100 66 68 118

Figure S2237.  Get High-res Image Gene #752: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC22A16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00078 (Fisher's exact test), Q value = 0.021

Table S7822.  Gene #752: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC22A16 MUTATED 0 0 9 3 1
SLC22A16 WILD-TYPE 59 75 65 116 37

Figure S2238.  Get High-res Image Gene #752: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0578 (Fisher's exact test), Q value = 0.26

Table S7823.  Gene #752: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC22A16 MUTATED 0 7 1 2 2
SLC22A16 WILD-TYPE 51 69 60 69 93
'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S7824.  Gene #752: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC22A16 MUTATED 2 2 0 3 2 0 0 2 1
SLC22A16 WILD-TYPE 67 46 39 13 51 20 21 36 49
'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S7825.  Gene #752: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLC22A16 MUTATED 0 0 1 0 2 0
SLC22A16 WILD-TYPE 13 16 13 11 9 9
'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.99

Table S7826.  Gene #752: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLC22A16 MUTATED 0 0 0 0 1 1 1 0 0
SLC22A16 WILD-TYPE 11 7 7 9 7 6 10 9 5
'FER MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.37

Table S7827.  Gene #753: 'FER MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FER MUTATED 3 1 0 1 0
FER WILD-TYPE 29 17 46 26 23
'FER MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S7828.  Gene #753: 'FER MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FER MUTATED 2 1 2
FER WILD-TYPE 41 66 34
'FER MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0931 (Fisher's exact test), Q value = 0.33

Table S7829.  Gene #753: 'FER MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FER MUTATED 0 5 10
FER WILD-TYPE 42 168 137
'FER MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S7830.  Gene #753: 'FER MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FER MUTATED 4 4 2
FER WILD-TYPE 58 69 73
'FER MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00311 (Fisher's exact test), Q value = 0.049

Table S7831.  Gene #753: 'FER MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FER MUTATED 0 3 10
FER WILD-TYPE 70 117 90

Figure S2239.  Get High-res Image Gene #753: 'FER MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FER MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 0.24

Table S7832.  Gene #753: 'FER MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FER MUTATED 0 0 1 1 1 9 0 1 0
FER WILD-TYPE 41 26 29 28 38 60 20 13 22
'FER MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S7833.  Gene #753: 'FER MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FER MUTATED 4 3 4 4
FER WILD-TYPE 96 69 68 117
'FER MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S7834.  Gene #753: 'FER MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FER MUTATED 1 4 5 3 2
FER WILD-TYPE 58 71 69 116 36
'FER MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S7835.  Gene #753: 'FER MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FER MUTATED 2 5 1 3 4
FER WILD-TYPE 49 71 60 68 91
'FER MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S7836.  Gene #753: 'FER MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FER MUTATED 3 3 1 0 3 2 0 2 1
FER WILD-TYPE 66 45 38 16 50 18 21 36 49
'FER MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.82

Table S7837.  Gene #753: 'FER MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FER MUTATED 1 0 2 0 1 0
FER WILD-TYPE 12 16 12 11 10 9
'FER MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S7838.  Gene #753: 'FER MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FER MUTATED 0 0 0 1 0 1 2 0 0
FER WILD-TYPE 11 7 7 8 8 6 9 9 5
'SCN3A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00508 (Fisher's exact test), Q value = 0.067

Table S7839.  Gene #754: 'SCN3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SCN3A MUTATED 7 0 1 3 0
SCN3A WILD-TYPE 25 18 45 24 23

Figure S2240.  Get High-res Image Gene #754: 'SCN3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SCN3A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00706 (Fisher's exact test), Q value = 0.079

Table S7840.  Gene #754: 'SCN3A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SCN3A MUTATED 8 2 1
SCN3A WILD-TYPE 35 65 35

Figure S2241.  Get High-res Image Gene #754: 'SCN3A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SCN3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00365 (Fisher's exact test), Q value = 0.054

Table S7841.  Gene #754: 'SCN3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SCN3A MUTATED 2 13 27
SCN3A WILD-TYPE 40 160 120

Figure S2242.  Get High-res Image Gene #754: 'SCN3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SCN3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S7842.  Gene #754: 'SCN3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SCN3A MUTATED 8 10 13
SCN3A WILD-TYPE 54 63 62
'SCN3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S7843.  Gene #754: 'SCN3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SCN3A MUTATED 7 17 13
SCN3A WILD-TYPE 63 103 87
'SCN3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S7844.  Gene #754: 'SCN3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SCN3A MUTATED 3 2 6 4 5 11 2 2 2
SCN3A WILD-TYPE 38 24 24 25 34 58 18 12 20
'SCN3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S7845.  Gene #754: 'SCN3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SCN3A MUTATED 11 13 6 12
SCN3A WILD-TYPE 89 59 66 109
'SCN3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00593 (Fisher's exact test), Q value = 0.073

Table S7846.  Gene #754: 'SCN3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SCN3A MUTATED 7 9 12 5 9
SCN3A WILD-TYPE 52 66 62 114 29

Figure S2243.  Get High-res Image Gene #754: 'SCN3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SCN3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0592 (Fisher's exact test), Q value = 0.26

Table S7847.  Gene #754: 'SCN3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SCN3A MUTATED 4 16 6 4 11
SCN3A WILD-TYPE 47 60 55 67 84
'SCN3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S7848.  Gene #754: 'SCN3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SCN3A MUTATED 11 6 1 3 7 2 2 6 3
SCN3A WILD-TYPE 58 42 38 13 46 18 19 32 47
'SCN3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S7849.  Gene #754: 'SCN3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SCN3A MUTATED 2 1 1 2 2 1
SCN3A WILD-TYPE 11 15 13 9 9 8
'SCN3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S7850.  Gene #754: 'SCN3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SCN3A MUTATED 2 0 1 1 0 2 1 2 0
SCN3A WILD-TYPE 9 7 6 8 8 5 10 7 5
'IQGAP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S7851.  Gene #755: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IQGAP2 MUTATED 5 0 2 1 0
IQGAP2 WILD-TYPE 27 18 44 26 23
'IQGAP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S7852.  Gene #755: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IQGAP2 MUTATED 6 2 0
IQGAP2 WILD-TYPE 37 65 36

Figure S2244.  Get High-res Image Gene #755: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IQGAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S7853.  Gene #755: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IQGAP2 MUTATED 2 6 13
IQGAP2 WILD-TYPE 40 167 134
'IQGAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S7854.  Gene #755: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IQGAP2 MUTATED 5 1 6
IQGAP2 WILD-TYPE 57 72 69
'IQGAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S7855.  Gene #755: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IQGAP2 MUTATED 3 6 7
IQGAP2 WILD-TYPE 67 114 93
'IQGAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S7856.  Gene #755: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IQGAP2 MUTATED 2 1 1 4 1 5 1 0 1
IQGAP2 WILD-TYPE 39 25 29 25 38 64 19 14 21
'IQGAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.88

Table S7857.  Gene #755: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IQGAP2 MUTATED 3 5 5 7
IQGAP2 WILD-TYPE 97 67 67 114
'IQGAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00586 (Fisher's exact test), Q value = 0.072

Table S7858.  Gene #755: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IQGAP2 MUTATED 3 2 7 2 6
IQGAP2 WILD-TYPE 56 73 67 117 32

Figure S2245.  Get High-res Image Gene #755: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IQGAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S7859.  Gene #755: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IQGAP2 MUTATED 3 5 3 2 6
IQGAP2 WILD-TYPE 48 71 58 69 89
'IQGAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0088 (Fisher's exact test), Q value = 0.088

Table S7860.  Gene #755: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IQGAP2 MUTATED 0 5 2 3 1 2 0 4 2
IQGAP2 WILD-TYPE 69 43 37 13 52 18 21 34 48

Figure S2246.  Get High-res Image Gene #755: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IQGAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S7861.  Gene #755: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IQGAP2 MUTATED 0 1 1 0 2 0
IQGAP2 WILD-TYPE 13 15 13 11 9 9
'IQGAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S7862.  Gene #755: 'IQGAP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IQGAP2 MUTATED 1 0 0 1 1 1 0 0 0
IQGAP2 WILD-TYPE 10 7 7 8 7 6 11 9 5
'CD3D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S7863.  Gene #756: 'CD3D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CD3D MUTATED 1 1 2
CD3D WILD-TYPE 41 172 145
'CD3D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7864.  Gene #756: 'CD3D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CD3D MUTATED 1 1 1
CD3D WILD-TYPE 61 72 74
'CD3D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.98

Table S7865.  Gene #756: 'CD3D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CD3D MUTATED 0 2 2
CD3D WILD-TYPE 70 118 98
'CD3D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S7866.  Gene #756: 'CD3D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CD3D MUTATED 0 0 1 1 0 2 0 0 0
CD3D WILD-TYPE 41 26 29 28 39 67 20 14 22
'CD3D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7867.  Gene #756: 'CD3D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CD3D MUTATED 1 1 1 1
CD3D WILD-TYPE 99 71 71 120
'CD3D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S7868.  Gene #756: 'CD3D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CD3D MUTATED 1 1 1 0 1
CD3D WILD-TYPE 58 74 73 119 37
'CD3D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.97

Table S7869.  Gene #756: 'CD3D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CD3D MUTATED 0 1 1 1 0
CD3D WILD-TYPE 51 75 60 70 95
'CD3D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S7870.  Gene #756: 'CD3D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CD3D MUTATED 2 1 0 0 0 0 0 0 0
CD3D WILD-TYPE 67 47 39 16 53 20 21 38 50
'ADORA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S7871.  Gene #757: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ADORA3 MUTATED 0 1 1 1 0
ADORA3 WILD-TYPE 32 17 45 26 23
'ADORA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7872.  Gene #757: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ADORA3 MUTATED 1 1 1
ADORA3 WILD-TYPE 42 66 35
'ADORA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.73

Table S7873.  Gene #757: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ADORA3 MUTATED 3 5 6
ADORA3 WILD-TYPE 39 168 141
'ADORA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S7874.  Gene #757: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ADORA3 MUTATED 3 3 5
ADORA3 WILD-TYPE 59 70 70
'ADORA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.62

Table S7875.  Gene #757: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ADORA3 MUTATED 5 3 5
ADORA3 WILD-TYPE 65 117 95
'ADORA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S7876.  Gene #757: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ADORA3 MUTATED 0 0 0 0 3 5 2 1 2
ADORA3 WILD-TYPE 41 26 30 29 36 64 18 13 20
'ADORA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S7877.  Gene #757: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ADORA3 MUTATED 4 2 6 2
ADORA3 WILD-TYPE 96 70 66 119
'ADORA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.59

Table S7878.  Gene #757: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ADORA3 MUTATED 4 2 5 2 1
ADORA3 WILD-TYPE 55 73 69 117 37
'ADORA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S7879.  Gene #757: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ADORA3 MUTATED 1 5 3 3 2
ADORA3 WILD-TYPE 50 71 58 68 93
'ADORA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S7880.  Gene #757: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ADORA3 MUTATED 5 3 0 2 1 0 0 1 2
ADORA3 WILD-TYPE 64 45 39 14 52 20 21 37 48
'ADORA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S7881.  Gene #757: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ADORA3 MUTATED 1 1 0 1 3 0
ADORA3 WILD-TYPE 12 15 14 10 8 9
'ADORA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S7882.  Gene #757: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ADORA3 MUTATED 0 1 0 0 1 0 2 2 0
ADORA3 WILD-TYPE 11 6 7 9 7 7 9 7 5
'ALDOB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00179 (Fisher's exact test), Q value = 0.035

Table S7883.  Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ALDOB MUTATED 5 0 0 0 0
ALDOB WILD-TYPE 27 18 46 27 23

Figure S2247.  Get High-res Image Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ALDOB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00254 (Fisher's exact test), Q value = 0.043

Table S7884.  Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ALDOB MUTATED 5 0 0
ALDOB WILD-TYPE 38 67 36

Figure S2248.  Get High-res Image Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ALDOB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0069

Table S7885.  Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ALDOB MUTATED 0 1 14
ALDOB WILD-TYPE 42 172 133

Figure S2249.  Get High-res Image Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ALDOB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.2

Table S7886.  Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ALDOB MUTATED 5 0 5
ALDOB WILD-TYPE 57 73 70

Figure S2250.  Get High-res Image Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ALDOB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S7887.  Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ALDOB MUTATED 1 3 7
ALDOB WILD-TYPE 69 117 93
'ALDOB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S7888.  Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ALDOB MUTATED 1 1 0 1 1 5 1 1 0
ALDOB WILD-TYPE 40 25 30 28 38 64 19 13 22
'ALDOB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.47

Table S7889.  Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ALDOB MUTATED 1 5 4 5
ALDOB WILD-TYPE 99 67 68 116
'ALDOB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.009

Table S7890.  Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ALDOB MUTATED 1 2 7 0 5
ALDOB WILD-TYPE 58 73 67 119 33

Figure S2251.  Get High-res Image Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ALDOB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.9

Table S7891.  Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ALDOB MUTATED 2 4 4 1 3
ALDOB WILD-TYPE 49 72 57 70 92
'ALDOB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S7892.  Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ALDOB MUTATED 4 3 0 1 3 0 1 2 0
ALDOB WILD-TYPE 65 45 39 15 50 20 20 36 50
'ALDOB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S7893.  Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ALDOB MUTATED 0 1 2 0 0 0
ALDOB WILD-TYPE 13 15 12 11 11 9
'ALDOB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.99

Table S7894.  Gene #758: 'ALDOB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ALDOB MUTATED 0 0 0 0 1 1 1 0 0
ALDOB WILD-TYPE 11 7 7 9 7 6 10 9 5
'ELFN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S7895.  Gene #759: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ELFN2 MUTATED 0 5 4
ELFN2 WILD-TYPE 42 168 143
'ELFN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S7896.  Gene #759: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ELFN2 MUTATED 1 3 4
ELFN2 WILD-TYPE 61 70 71
'ELFN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S7897.  Gene #759: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ELFN2 MUTATED 0 3 3
ELFN2 WILD-TYPE 70 117 97
'ELFN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S7898.  Gene #759: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ELFN2 MUTATED 1 0 1 1 0 3 0 0 0
ELFN2 WILD-TYPE 40 26 29 28 39 66 20 14 22
'ELFN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S7899.  Gene #759: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ELFN2 MUTATED 3 2 3 1
ELFN2 WILD-TYPE 97 70 69 120
'ELFN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S7900.  Gene #759: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ELFN2 MUTATED 1 5 2 1 0
ELFN2 WILD-TYPE 58 70 72 118 38
'ELFN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S7901.  Gene #759: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ELFN2 MUTATED 1 6 1 1 0
ELFN2 WILD-TYPE 50 70 60 70 95

Figure S2252.  Get High-res Image Gene #759: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ELFN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S7902.  Gene #759: 'ELFN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ELFN2 MUTATED 4 2 2 0 0 0 0 0 1
ELFN2 WILD-TYPE 65 46 37 16 53 20 21 38 49
'AWAT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S7903.  Gene #760: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AWAT1 MUTATED 2 0 0 1 0
AWAT1 WILD-TYPE 30 18 46 26 23
'AWAT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.79

Table S7904.  Gene #760: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AWAT1 MUTATED 2 1 0
AWAT1 WILD-TYPE 41 66 36
'AWAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S7905.  Gene #760: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AWAT1 MUTATED 0 3 5
AWAT1 WILD-TYPE 42 170 142
'AWAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S7906.  Gene #760: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AWAT1 MUTATED 2 1 2
AWAT1 WILD-TYPE 60 72 73
'AWAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S7907.  Gene #760: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AWAT1 MUTATED 0 3 4
AWAT1 WILD-TYPE 70 117 96
'AWAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S7908.  Gene #760: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AWAT1 MUTATED 1 1 0 1 1 1 1 0 1
AWAT1 WILD-TYPE 40 25 30 28 38 68 19 14 21
'AWAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S7909.  Gene #760: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AWAT1 MUTATED 2 2 2 2
AWAT1 WILD-TYPE 98 70 70 119
'AWAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S7910.  Gene #760: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AWAT1 MUTATED 3 1 1 1 2
AWAT1 WILD-TYPE 56 74 73 118 36
'AWAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 0.88

Table S7911.  Gene #760: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AWAT1 MUTATED 2 2 1 0 3
AWAT1 WILD-TYPE 49 74 60 71 92
'AWAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S7912.  Gene #760: 'AWAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AWAT1 MUTATED 0 2 2 1 0 0 1 1 1
AWAT1 WILD-TYPE 69 46 37 15 53 20 20 37 49
'EXT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.59

Table S7913.  Gene #761: 'EXT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EXT1 MUTATED 4 0 2 2 0
EXT1 WILD-TYPE 28 18 44 25 23
'EXT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S7914.  Gene #761: 'EXT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EXT1 MUTATED 5 2 1
EXT1 WILD-TYPE 38 65 35
'EXT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S7915.  Gene #761: 'EXT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EXT1 MUTATED 0 7 11
EXT1 WILD-TYPE 42 166 136
'EXT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S7916.  Gene #761: 'EXT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EXT1 MUTATED 2 3 4
EXT1 WILD-TYPE 60 70 71
'EXT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S7917.  Gene #761: 'EXT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EXT1 MUTATED 3 7 4
EXT1 WILD-TYPE 67 113 96
'EXT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S7918.  Gene #761: 'EXT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EXT1 MUTATED 2 0 2 0 2 3 2 2 1
EXT1 WILD-TYPE 39 26 28 29 37 66 18 12 21
'EXT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S7919.  Gene #761: 'EXT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EXT1 MUTATED 5 3 2 8
EXT1 WILD-TYPE 95 69 70 113
'EXT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.53

Table S7920.  Gene #761: 'EXT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EXT1 MUTATED 2 4 3 4 5
EXT1 WILD-TYPE 57 71 71 115 33
'EXT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 0.26

Table S7921.  Gene #761: 'EXT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EXT1 MUTATED 2 6 0 1 7
EXT1 WILD-TYPE 49 70 61 70 88
'EXT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0578 (Fisher's exact test), Q value = 0.26

Table S7922.  Gene #761: 'EXT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EXT1 MUTATED 5 2 0 0 2 2 0 5 0
EXT1 WILD-TYPE 64 46 39 16 51 18 21 33 50
'EXT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S7923.  Gene #761: 'EXT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EXT1 MUTATED 0 1 1 2 0 0
EXT1 WILD-TYPE 13 15 13 9 11 9
'EXT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.92

Table S7924.  Gene #761: 'EXT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EXT1 MUTATED 0 0 0 0 1 0 2 1 0
EXT1 WILD-TYPE 11 7 7 9 7 7 9 8 5
'DNAH17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00355 (Fisher's exact test), Q value = 0.053

Table S7925.  Gene #762: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DNAH17 MUTATED 2 7 21
DNAH17 WILD-TYPE 40 166 126

Figure S2253.  Get High-res Image Gene #762: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNAH17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0878 (Fisher's exact test), Q value = 0.32

Table S7926.  Gene #762: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DNAH17 MUTATED 11 5 13
DNAH17 WILD-TYPE 51 68 62
'DNAH17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0623 (Fisher's exact test), Q value = 0.27

Table S7927.  Gene #762: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DNAH17 MUTATED 6 6 14
DNAH17 WILD-TYPE 64 114 86
'DNAH17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0179 (Fisher's exact test), Q value = 0.13

Table S7928.  Gene #762: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DNAH17 MUTATED 3 2 0 1 3 12 1 4 0
DNAH17 WILD-TYPE 38 24 30 28 36 57 19 10 22

Figure S2254.  Get High-res Image Gene #762: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'DNAH17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00351 (Fisher's exact test), Q value = 0.053

Table S7929.  Gene #762: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DNAH17 MUTATED 7 12 8 3
DNAH17 WILD-TYPE 93 60 64 118

Figure S2255.  Get High-res Image Gene #762: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DNAH17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00079 (Fisher's exact test), Q value = 0.021

Table S7930.  Gene #762: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DNAH17 MUTATED 5 10 12 3 0
DNAH17 WILD-TYPE 54 65 62 116 38

Figure S2256.  Get High-res Image Gene #762: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DNAH17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00103 (Fisher's exact test), Q value = 0.025

Table S7931.  Gene #762: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DNAH17 MUTATED 6 13 7 1 3
DNAH17 WILD-TYPE 45 63 54 70 92

Figure S2257.  Get High-res Image Gene #762: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DNAH17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0569 (Fisher's exact test), Q value = 0.25

Table S7932.  Gene #762: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DNAH17 MUTATED 6 8 2 4 3 3 0 1 3
DNAH17 WILD-TYPE 63 40 37 12 50 17 21 37 47
'DNAH17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S7933.  Gene #762: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DNAH17 MUTATED 1 1 3 0 3 0
DNAH17 WILD-TYPE 12 15 11 11 8 9
'DNAH17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S7934.  Gene #762: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DNAH17 MUTATED 0 0 0 1 1 0 5 0 1
DNAH17 WILD-TYPE 11 7 7 8 7 7 6 9 4

Figure S2258.  Get High-res Image Gene #762: 'DNAH17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SYNE1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S7935.  Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SYNE1 MUTATED 18 1 7 9 2
SYNE1 WILD-TYPE 14 17 39 18 21

Figure S2259.  Get High-res Image Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SYNE1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S7936.  Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SYNE1 MUTATED 22 11 4
SYNE1 WILD-TYPE 21 56 32

Figure S2260.  Get High-res Image Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SYNE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S7937.  Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SYNE1 MUTATED 10 36 70
SYNE1 WILD-TYPE 32 137 77

Figure S2261.  Get High-res Image Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SYNE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S7938.  Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SYNE1 MUTATED 29 22 30
SYNE1 WILD-TYPE 33 51 45
'SYNE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.97

Table S7939.  Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SYNE1 MUTATED 23 39 38
SYNE1 WILD-TYPE 47 81 62
'SYNE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S7940.  Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SYNE1 MUTATED 11 5 7 9 13 29 8 6 12
SYNE1 WILD-TYPE 30 21 23 20 26 40 12 8 10
'SYNE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.25

Table S7941.  Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SYNE1 MUTATED 27 32 25 33
SYNE1 WILD-TYPE 73 40 47 88
'SYNE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S7942.  Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SYNE1 MUTATED 17 21 38 19 22
SYNE1 WILD-TYPE 42 54 36 100 16

Figure S2262.  Get High-res Image Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SYNE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.018

Table S7943.  Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SYNE1 MUTATED 19 33 21 9 32
SYNE1 WILD-TYPE 32 43 40 62 63

Figure S2263.  Get High-res Image Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SYNE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0081

Table S7944.  Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SYNE1 MUTATED 20 17 13 12 18 5 7 17 5
SYNE1 WILD-TYPE 49 31 26 4 35 15 14 21 45

Figure S2264.  Get High-res Image Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SYNE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S7945.  Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SYNE1 MUTATED 2 5 4 4 6 4
SYNE1 WILD-TYPE 11 11 10 7 5 5
'SYNE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.37

Table S7946.  Gene #763: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SYNE1 MUTATED 2 2 1 4 2 3 8 3 0
SYNE1 WILD-TYPE 9 5 6 5 6 4 3 6 5
'C1ORF35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 0.27

Table S7947.  Gene #764: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C1ORF35 MUTATED 0 0 4
C1ORF35 WILD-TYPE 42 173 143
'C1ORF35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S7948.  Gene #764: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C1ORF35 MUTATED 1 0 3
C1ORF35 WILD-TYPE 61 73 72
'C1ORF35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S7949.  Gene #764: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C1ORF35 MUTATED 1 0 2
C1ORF35 WILD-TYPE 69 120 98
'C1ORF35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7950.  Gene #764: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C1ORF35 MUTATED 1 0 0 0 1 1 0 0 0
C1ORF35 WILD-TYPE 40 26 30 29 38 68 20 14 22
'C1ORF35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.23

Table S7951.  Gene #764: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C1ORF35 MUTATED 0 2 2 0
C1ORF35 WILD-TYPE 100 70 70 121

Figure S2265.  Get High-res Image Gene #764: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C1ORF35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0438 (Fisher's exact test), Q value = 0.22

Table S7952.  Gene #764: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C1ORF35 MUTATED 1 0 3 0 0
C1ORF35 WILD-TYPE 58 75 71 119 38

Figure S2266.  Get High-res Image Gene #764: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C1ORF35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 0.29

Table S7953.  Gene #764: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C1ORF35 MUTATED 0 3 1 0 0
C1ORF35 WILD-TYPE 51 73 60 71 95
'C1ORF35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S7954.  Gene #764: 'C1ORF35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C1ORF35 MUTATED 1 2 0 1 0 0 0 0 0
C1ORF35 WILD-TYPE 68 46 39 15 53 20 21 38 50
'POLQ MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.14

Table S7955.  Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
POLQ MUTATED 5 0 0 1 1
POLQ WILD-TYPE 27 18 46 26 22

Figure S2267.  Get High-res Image Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'POLQ MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S7956.  Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
POLQ MUTATED 4 1 2
POLQ WILD-TYPE 39 66 34
'POLQ MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S7957.  Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
POLQ MUTATED 2 4 24
POLQ WILD-TYPE 40 169 123

Figure S2268.  Get High-res Image Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'POLQ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.054 (Fisher's exact test), Q value = 0.25

Table S7958.  Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
POLQ MUTATED 9 3 11
POLQ WILD-TYPE 53 70 64
'POLQ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.15

Table S7959.  Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
POLQ MUTATED 2 9 15
POLQ WILD-TYPE 68 111 85

Figure S2269.  Get High-res Image Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'POLQ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S7960.  Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
POLQ MUTATED 2 3 1 4 3 11 1 0 1
POLQ WILD-TYPE 39 23 29 25 36 58 19 14 21
'POLQ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S7961.  Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
POLQ MUTATED 3 12 7 8
POLQ WILD-TYPE 97 60 65 113

Figure S2270.  Get High-res Image Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'POLQ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S7962.  Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
POLQ MUTATED 4 3 14 6 3
POLQ WILD-TYPE 55 72 60 113 35

Figure S2271.  Get High-res Image Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'POLQ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.012

Table S7963.  Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
POLQ MUTATED 0 16 4 3 7
POLQ WILD-TYPE 51 60 57 68 88

Figure S2272.  Get High-res Image Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'POLQ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0117 (Fisher's exact test), Q value = 0.1

Table S7964.  Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
POLQ MUTATED 9 6 0 5 2 2 1 3 2
POLQ WILD-TYPE 60 42 39 11 51 18 20 35 48

Figure S2273.  Get High-res Image Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'POLQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.25

Table S7965.  Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
POLQ MUTATED 0 1 1 1 4 0
POLQ WILD-TYPE 13 15 13 10 7 9
'POLQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S7966.  Gene #765: 'POLQ MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
POLQ MUTATED 1 0 1 2 0 1 2 0 0
POLQ WILD-TYPE 10 7 6 7 8 6 9 9 5
'BAI3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 0.18

Table S7967.  Gene #766: 'BAI3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BAI3 MUTATED 7 1 2 4 0
BAI3 WILD-TYPE 25 17 44 23 23

Figure S2274.  Get High-res Image Gene #766: 'BAI3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BAI3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0579 (Fisher's exact test), Q value = 0.26

Table S7968.  Gene #766: 'BAI3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BAI3 MUTATED 8 3 3
BAI3 WILD-TYPE 35 64 33
'BAI3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S7969.  Gene #766: 'BAI3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BAI3 MUTATED 3 17 22
BAI3 WILD-TYPE 39 156 125
'BAI3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 0.97

Table S7970.  Gene #766: 'BAI3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BAI3 MUTATED 9 8 12
BAI3 WILD-TYPE 53 65 63
'BAI3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S7971.  Gene #766: 'BAI3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BAI3 MUTATED 4 13 15
BAI3 WILD-TYPE 66 107 85
'BAI3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S7972.  Gene #766: 'BAI3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BAI3 MUTATED 6 2 1 6 2 10 4 0 1
BAI3 WILD-TYPE 35 24 29 23 37 59 16 14 21
'BAI3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S7973.  Gene #766: 'BAI3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BAI3 MUTATED 14 7 9 13
BAI3 WILD-TYPE 86 65 63 108
'BAI3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0454 (Fisher's exact test), Q value = 0.23

Table S7974.  Gene #766: 'BAI3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BAI3 MUTATED 5 13 11 7 7
BAI3 WILD-TYPE 54 62 63 112 31

Figure S2275.  Get High-res Image Gene #766: 'BAI3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BAI3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S7975.  Gene #766: 'BAI3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BAI3 MUTATED 8 14 3 7 10
BAI3 WILD-TYPE 43 62 58 64 85
'BAI3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0853 (Fisher's exact test), Q value = 0.32

Table S7976.  Gene #766: 'BAI3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BAI3 MUTATED 11 6 6 4 2 2 0 7 4
BAI3 WILD-TYPE 58 42 33 12 51 18 21 31 46
'BAI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.73

Table S7977.  Gene #766: 'BAI3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BAI3 MUTATED 4 1 2 1 2 0
BAI3 WILD-TYPE 9 15 12 10 9 9
'BAI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 0.95

Table S7978.  Gene #766: 'BAI3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BAI3 MUTATED 1 0 0 2 1 0 3 2 1
BAI3 WILD-TYPE 10 7 7 7 7 7 8 7 4
'WNK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.63

Table S7979.  Gene #767: 'WNK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
WNK3 MUTATED 4 0 3 1 0
WNK3 WILD-TYPE 28 18 43 26 23
'WNK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S7980.  Gene #767: 'WNK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
WNK3 MUTATED 4 1 3
WNK3 WILD-TYPE 39 66 33
'WNK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.19

Table S7981.  Gene #767: 'WNK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WNK3 MUTATED 1 7 16
WNK3 WILD-TYPE 41 166 131

Figure S2276.  Get High-res Image Gene #767: 'WNK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WNK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 0.27

Table S7982.  Gene #767: 'WNK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WNK3 MUTATED 9 3 4
WNK3 WILD-TYPE 53 70 71
'WNK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S7983.  Gene #767: 'WNK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WNK3 MUTATED 2 5 10
WNK3 WILD-TYPE 68 115 90
'WNK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S7984.  Gene #767: 'WNK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WNK3 MUTATED 3 0 0 3 1 8 0 1 1
WNK3 WILD-TYPE 38 26 30 26 38 61 20 13 21
'WNK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S7985.  Gene #767: 'WNK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WNK3 MUTATED 4 6 7 7
WNK3 WILD-TYPE 96 66 65 114
'WNK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.42

Table S7986.  Gene #767: 'WNK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WNK3 MUTATED 5 3 8 4 4
WNK3 WILD-TYPE 54 72 66 115 34
'WNK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.47

Table S7987.  Gene #767: 'WNK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WNK3 MUTATED 3 6 7 1 6
WNK3 WILD-TYPE 48 70 54 70 89
'WNK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S7988.  Gene #767: 'WNK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WNK3 MUTATED 3 6 1 3 3 1 1 3 2
WNK3 WILD-TYPE 66 42 38 13 50 19 20 35 48
'WNK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 0.2

Table S7989.  Gene #767: 'WNK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
WNK3 MUTATED 0 2 0 0 3 0
WNK3 WILD-TYPE 13 14 14 11 8 9

Figure S2277.  Get High-res Image Gene #767: 'WNK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'WNK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0692 (Fisher's exact test), Q value = 0.28

Table S7990.  Gene #767: 'WNK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
WNK3 MUTATED 0 2 0 2 0 1 0 0 0
WNK3 WILD-TYPE 11 5 7 7 8 6 11 9 5
'CASC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S7991.  Gene #768: 'CASC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CASC1 MUTATED 2 1 0 1 0
CASC1 WILD-TYPE 30 17 46 26 23
'CASC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S7992.  Gene #768: 'CASC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CASC1 MUTATED 2 2 0
CASC1 WILD-TYPE 41 65 36
'CASC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S7993.  Gene #768: 'CASC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CASC1 MUTATED 2 3 7
CASC1 WILD-TYPE 40 170 140
'CASC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S7994.  Gene #768: 'CASC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CASC1 MUTATED 3 2 3
CASC1 WILD-TYPE 59 71 72
'CASC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.89

Table S7995.  Gene #768: 'CASC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CASC1 MUTATED 1 5 3
CASC1 WILD-TYPE 69 115 97
'CASC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 0.3

Table S7996.  Gene #768: 'CASC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CASC1 MUTATED 1 0 2 0 0 2 2 2 0
CASC1 WILD-TYPE 40 26 28 29 39 67 18 12 22
'CASC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S7997.  Gene #768: 'CASC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CASC1 MUTATED 3 4 1 4
CASC1 WILD-TYPE 97 68 71 117
'CASC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S7998.  Gene #768: 'CASC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CASC1 MUTATED 3 1 4 2 2
CASC1 WILD-TYPE 56 74 70 117 36
'CASC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S7999.  Gene #768: 'CASC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CASC1 MUTATED 1 3 3 1 4
CASC1 WILD-TYPE 50 73 58 70 91
'CASC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.96

Table S8000.  Gene #768: 'CASC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CASC1 MUTATED 3 2 2 1 1 1 0 2 0
CASC1 WILD-TYPE 66 46 37 15 52 19 21 36 50
'IL2RG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00729 (Fisher's exact test), Q value = 0.08

Table S8001.  Gene #769: 'IL2RG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IL2RG MUTATED 0 0 7
IL2RG WILD-TYPE 42 173 140

Figure S2278.  Get High-res Image Gene #769: 'IL2RG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IL2RG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S8002.  Gene #769: 'IL2RG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IL2RG MUTATED 3 0 4
IL2RG WILD-TYPE 59 73 71
'IL2RG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.54

Table S8003.  Gene #769: 'IL2RG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IL2RG MUTATED 3 1 3
IL2RG WILD-TYPE 67 119 97
'IL2RG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S8004.  Gene #769: 'IL2RG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IL2RG MUTATED 1 0 0 0 1 2 1 2 0
IL2RG WILD-TYPE 40 26 30 29 38 67 19 12 22
'IL2RG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00219 (Fisher's exact test), Q value = 0.04

Table S8005.  Gene #769: 'IL2RG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IL2RG MUTATED 0 4 3 0
IL2RG WILD-TYPE 100 68 69 121

Figure S2279.  Get High-res Image Gene #769: 'IL2RG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IL2RG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S8006.  Gene #769: 'IL2RG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IL2RG MUTATED 1 1 5 0 0
IL2RG WILD-TYPE 58 74 69 119 38

Figure S2280.  Get High-res Image Gene #769: 'IL2RG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IL2RG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S8007.  Gene #769: 'IL2RG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IL2RG MUTATED 0 5 1 0 1
IL2RG WILD-TYPE 51 71 60 71 94

Figure S2281.  Get High-res Image Gene #769: 'IL2RG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IL2RG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S8008.  Gene #769: 'IL2RG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IL2RG MUTATED 3 1 0 2 0 0 0 1 0
IL2RG WILD-TYPE 66 47 39 14 53 20 21 37 50
'IL2RG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00618 (Fisher's exact test), Q value = 0.074

Table S8009.  Gene #769: 'IL2RG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IL2RG MUTATED 0 0 0 0 3 0
IL2RG WILD-TYPE 13 16 14 11 8 9

Figure S2282.  Get High-res Image Gene #769: 'IL2RG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'IL2RG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S8010.  Gene #769: 'IL2RG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IL2RG MUTATED 0 0 0 1 1 1 0 0 0
IL2RG WILD-TYPE 11 7 7 8 7 6 11 9 5
'ACOT9 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8011.  Gene #770: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ACOT9 MUTATED 0 2 2
ACOT9 WILD-TYPE 42 171 145
'ACOT9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8012.  Gene #770: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ACOT9 MUTATED 1 1 1
ACOT9 WILD-TYPE 61 72 74
'ACOT9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S8013.  Gene #770: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ACOT9 MUTATED 0 3 0
ACOT9 WILD-TYPE 70 117 100
'ACOT9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S8014.  Gene #770: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ACOT9 MUTATED 0 0 0 1 2 0 0 0 0
ACOT9 WILD-TYPE 41 26 30 28 37 69 20 14 22
'ACOT9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S8015.  Gene #770: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ACOT9 MUTATED 2 1 0 1
ACOT9 WILD-TYPE 98 71 72 120
'ACOT9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S8016.  Gene #770: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ACOT9 MUTATED 0 2 1 0 1
ACOT9 WILD-TYPE 59 73 73 119 37
'ACOT9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S8017.  Gene #770: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ACOT9 MUTATED 0 3 0 0 1
ACOT9 WILD-TYPE 51 73 61 71 94
'ACOT9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S8018.  Gene #770: 'ACOT9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ACOT9 MUTATED 2 0 0 0 1 0 0 1 0
ACOT9 WILD-TYPE 67 48 39 16 52 20 21 37 50
'DCTN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.91

Table S8019.  Gene #771: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DCTN5 MUTATED 1 2 3
DCTN5 WILD-TYPE 41 171 144
'DCTN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S8020.  Gene #771: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DCTN5 MUTATED 1 1 4
DCTN5 WILD-TYPE 61 72 71
'DCTN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8021.  Gene #771: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DCTN5 MUTATED 1 3 2
DCTN5 WILD-TYPE 69 117 98
'DCTN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S8022.  Gene #771: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DCTN5 MUTATED 0 0 0 2 2 1 0 0 1
DCTN5 WILD-TYPE 41 26 30 27 37 68 20 14 21
'DCTN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.55

Table S8023.  Gene #771: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DCTN5 MUTATED 2 3 0 1
DCTN5 WILD-TYPE 98 69 72 120
'DCTN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S8024.  Gene #771: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DCTN5 MUTATED 1 1 3 0 1
DCTN5 WILD-TYPE 58 74 71 119 37
'DCTN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.1

Table S8025.  Gene #771: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DCTN5 MUTATED 0 5 0 0 1
DCTN5 WILD-TYPE 51 71 61 71 94

Figure S2283.  Get High-res Image Gene #771: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DCTN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S8026.  Gene #771: 'DCTN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DCTN5 MUTATED 1 0 1 2 1 0 0 1 0
DCTN5 WILD-TYPE 68 48 38 14 52 20 21 37 50
'USH2A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0078 (Fisher's exact test), Q value = 0.083

Table S8027.  Gene #772: 'USH2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
USH2A MUTATED 11 1 3 6 2
USH2A WILD-TYPE 21 17 43 21 21

Figure S2284.  Get High-res Image Gene #772: 'USH2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'USH2A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S8028.  Gene #772: 'USH2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
USH2A MUTATED 13 7 3
USH2A WILD-TYPE 30 60 33

Figure S2285.  Get High-res Image Gene #772: 'USH2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'USH2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0084

Table S8029.  Gene #772: 'USH2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
USH2A MUTATED 9 20 44
USH2A WILD-TYPE 33 153 103

Figure S2286.  Get High-res Image Gene #772: 'USH2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USH2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0505 (Fisher's exact test), Q value = 0.24

Table S8030.  Gene #772: 'USH2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
USH2A MUTATED 20 11 20
USH2A WILD-TYPE 42 62 55
'USH2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.56

Table S8031.  Gene #772: 'USH2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
USH2A MUTATED 10 25 25
USH2A WILD-TYPE 60 95 75
'USH2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S8032.  Gene #772: 'USH2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
USH2A MUTATED 5 6 3 4 7 20 8 3 4
USH2A WILD-TYPE 36 20 27 25 32 49 12 11 18
'USH2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 0.3

Table S8033.  Gene #772: 'USH2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
USH2A MUTATED 15 20 19 20
USH2A WILD-TYPE 85 52 53 101
'USH2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00527 (Fisher's exact test), Q value = 0.068

Table S8034.  Gene #772: 'USH2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
USH2A MUTATED 10 17 23 13 11
USH2A WILD-TYPE 49 58 51 106 27

Figure S2287.  Get High-res Image Gene #772: 'USH2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USH2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S8035.  Gene #772: 'USH2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
USH2A MUTATED 9 23 12 10 16
USH2A WILD-TYPE 42 53 49 61 79
'USH2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S8036.  Gene #772: 'USH2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
USH2A MUTATED 15 12 7 5 7 6 2 11 5
USH2A WILD-TYPE 54 36 32 11 46 14 19 27 45
'USH2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S8037.  Gene #772: 'USH2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
USH2A MUTATED 2 6 3 2 4 2
USH2A WILD-TYPE 11 10 11 9 7 7
'USH2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S8038.  Gene #772: 'USH2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
USH2A MUTATED 3 2 0 0 3 3 5 3 0
USH2A WILD-TYPE 8 5 7 9 5 4 6 6 5
'PARP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00935 (Fisher's exact test), Q value = 0.091

Table S8039.  Gene #773: 'PARP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PARP1 MUTATED 1 2 11
PARP1 WILD-TYPE 41 171 136

Figure S2288.  Get High-res Image Gene #773: 'PARP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PARP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S8040.  Gene #773: 'PARP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PARP1 MUTATED 4 2 4
PARP1 WILD-TYPE 58 71 71
'PARP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S8041.  Gene #773: 'PARP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PARP1 MUTATED 1 6 5
PARP1 WILD-TYPE 69 114 95
'PARP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S8042.  Gene #773: 'PARP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PARP1 MUTATED 2 0 2 2 0 4 0 2 0
PARP1 WILD-TYPE 39 26 28 27 39 65 20 12 22
'PARP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S8043.  Gene #773: 'PARP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PARP1 MUTATED 2 6 3 3
PARP1 WILD-TYPE 98 66 69 118
'PARP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.65

Table S8044.  Gene #773: 'PARP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PARP1 MUTATED 3 2 5 2 2
PARP1 WILD-TYPE 56 73 69 117 36
'PARP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S8045.  Gene #773: 'PARP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PARP1 MUTATED 0 5 3 1 5
PARP1 WILD-TYPE 51 71 58 70 90
'PARP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.58

Table S8046.  Gene #773: 'PARP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PARP1 MUTATED 4 4 0 1 0 1 1 2 1
PARP1 WILD-TYPE 65 44 39 15 53 19 20 36 49
'PARP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S8047.  Gene #773: 'PARP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PARP1 MUTATED 0 1 0 1 0 1
PARP1 WILD-TYPE 13 15 14 10 11 8
'PARP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S8048.  Gene #773: 'PARP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PARP1 MUTATED 1 0 0 0 0 1 0 1 0
PARP1 WILD-TYPE 10 7 7 9 8 6 11 8 5
'CCDC141 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.096

Table S8049.  Gene #774: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CCDC141 MUTATED 1 0 0 4 0
CCDC141 WILD-TYPE 31 18 46 23 23

Figure S2289.  Get High-res Image Gene #774: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CCDC141 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S8050.  Gene #774: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CCDC141 MUTATED 3 2 0
CCDC141 WILD-TYPE 40 65 36
'CCDC141 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S8051.  Gene #774: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCDC141 MUTATED 2 7 12
CCDC141 WILD-TYPE 40 166 135
'CCDC141 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S8052.  Gene #774: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCDC141 MUTATED 8 6 1
CCDC141 WILD-TYPE 54 67 74

Figure S2290.  Get High-res Image Gene #774: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CCDC141 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S8053.  Gene #774: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCDC141 MUTATED 2 7 8
CCDC141 WILD-TYPE 68 113 92
'CCDC141 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.999 (Fisher's exact test), Q value = 1

Table S8054.  Gene #774: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCDC141 MUTATED 3 1 2 1 2 5 1 1 1
CCDC141 WILD-TYPE 38 25 28 28 37 64 19 13 21
'CCDC141 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S8055.  Gene #774: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCDC141 MUTATED 5 3 6 7
CCDC141 WILD-TYPE 95 69 66 114
'CCDC141 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S8056.  Gene #774: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCDC141 MUTATED 4 7 3 3 4
CCDC141 WILD-TYPE 55 68 71 116 34
'CCDC141 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.65

Table S8057.  Gene #774: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCDC141 MUTATED 5 4 4 1 6
CCDC141 WILD-TYPE 46 72 57 70 89
'CCDC141 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S8058.  Gene #774: 'CCDC141 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCDC141 MUTATED 2 3 3 1 2 3 0 3 3
CCDC141 WILD-TYPE 67 45 36 15 51 17 21 35 47
'OAS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.25

Table S8059.  Gene #775: 'OAS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OAS1 MUTATED 3 0 0 0 0
OAS1 WILD-TYPE 29 18 46 27 23
'OAS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S8060.  Gene #775: 'OAS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OAS1 MUTATED 2 0 1
OAS1 WILD-TYPE 41 67 35
'OAS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S8061.  Gene #775: 'OAS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OAS1 MUTATED 0 3 5
OAS1 WILD-TYPE 42 170 142
'OAS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S8062.  Gene #775: 'OAS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OAS1 MUTATED 2 2 1
OAS1 WILD-TYPE 60 71 74
'OAS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00546 (Fisher's exact test), Q value = 0.07

Table S8063.  Gene #775: 'OAS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OAS1 MUTATED 0 0 5
OAS1 WILD-TYPE 70 120 95

Figure S2291.  Get High-res Image Gene #775: 'OAS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'OAS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S8064.  Gene #775: 'OAS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OAS1 MUTATED 1 0 0 0 1 3 0 0 0
OAS1 WILD-TYPE 40 26 30 29 38 66 20 14 22
'OAS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S8065.  Gene #775: 'OAS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OAS1 MUTATED 3 1 1 3
OAS1 WILD-TYPE 97 71 71 118
'OAS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.066 (Fisher's exact test), Q value = 0.28

Table S8066.  Gene #775: 'OAS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OAS1 MUTATED 1 4 0 1 2
OAS1 WILD-TYPE 58 71 74 118 36
'OAS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S8067.  Gene #775: 'OAS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OAS1 MUTATED 1 1 2 1 3
OAS1 WILD-TYPE 50 75 59 70 92
'OAS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S8068.  Gene #775: 'OAS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OAS1 MUTATED 0 1 0 0 4 1 0 1 1
OAS1 WILD-TYPE 69 47 39 16 49 19 21 37 49
'KIAA0406 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.66

Table S8069.  Gene #776: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIAA0406 MUTATED 3 0 1 0 1
KIAA0406 WILD-TYPE 29 18 45 27 22
'KIAA0406 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.053 (Fisher's exact test), Q value = 0.25

Table S8070.  Gene #776: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIAA0406 MUTATED 3 0 2
KIAA0406 WILD-TYPE 40 67 34
'KIAA0406 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.5

Table S8071.  Gene #776: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA0406 MUTATED 1 4 9
KIAA0406 WILD-TYPE 41 169 138
'KIAA0406 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S8072.  Gene #776: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA0406 MUTATED 3 1 5
KIAA0406 WILD-TYPE 59 72 70
'KIAA0406 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S8073.  Gene #776: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA0406 MUTATED 4 2 7
KIAA0406 WILD-TYPE 66 118 93
'KIAA0406 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S8074.  Gene #776: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA0406 MUTATED 2 0 1 1 2 4 2 0 1
KIAA0406 WILD-TYPE 39 26 29 28 37 65 18 14 21
'KIAA0406 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S8075.  Gene #776: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA0406 MUTATED 1 4 5 4
KIAA0406 WILD-TYPE 99 68 67 117
'KIAA0406 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S8076.  Gene #776: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA0406 MUTATED 3 0 6 2 3
KIAA0406 WILD-TYPE 56 75 68 117 35

Figure S2292.  Get High-res Image Gene #776: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S8077.  Gene #776: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA0406 MUTATED 1 6 2 1 2
KIAA0406 WILD-TYPE 50 70 59 70 93
'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00069 (Fisher's exact test), Q value = 0.02

Table S8078.  Gene #776: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA0406 MUTATED 1 3 0 5 1 0 0 1 1
KIAA0406 WILD-TYPE 68 45 39 11 52 20 21 37 49

Figure S2293.  Get High-res Image Gene #776: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.25

Table S8079.  Gene #776: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIAA0406 MUTATED 0 1 0 0 3 1
KIAA0406 WILD-TYPE 13 15 14 11 8 8
'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S8080.  Gene #776: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIAA0406 MUTATED 1 0 1 1 1 0 1 0 0
KIAA0406 WILD-TYPE 10 7 6 8 7 7 10 9 5
'DNASE1L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.84

Table S8081.  Gene #777: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DNASE1L3 MUTATED 0 3 5
DNASE1L3 WILD-TYPE 42 170 142
'DNASE1L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S8082.  Gene #777: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DNASE1L3 MUTATED 4 1 1
DNASE1L3 WILD-TYPE 58 72 74
'DNASE1L3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S8083.  Gene #777: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DNASE1L3 MUTATED 2 1 2
DNASE1L3 WILD-TYPE 68 119 98
'DNASE1L3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S8084.  Gene #777: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DNASE1L3 MUTATED 2 1 0 0 0 1 0 0 1
DNASE1L3 WILD-TYPE 39 25 30 29 39 68 20 14 21
'DNASE1L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8085.  Gene #777: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DNASE1L3 MUTATED 2 1 2 3
DNASE1L3 WILD-TYPE 98 71 70 118
'DNASE1L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.89

Table S8086.  Gene #777: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DNASE1L3 MUTATED 2 0 2 3 1
DNASE1L3 WILD-TYPE 57 75 72 116 37
'DNASE1L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 0.97

Table S8087.  Gene #777: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DNASE1L3 MUTATED 1 2 2 0 2
DNASE1L3 WILD-TYPE 50 74 59 71 93
'DNASE1L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S8088.  Gene #777: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DNASE1L3 MUTATED 0 3 0 1 0 0 2 0 1
DNASE1L3 WILD-TYPE 69 45 39 15 53 20 19 38 49

Figure S2294.  Get High-res Image Gene #777: 'DNASE1L3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OR8A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S8089.  Gene #778: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR8A1 MUTATED 1 1 2
OR8A1 WILD-TYPE 41 172 145
'OR8A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.98

Table S8090.  Gene #778: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR8A1 MUTATED 2 1 1
OR8A1 WILD-TYPE 60 72 74
'OR8A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S8091.  Gene #778: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR8A1 MUTATED 0 1 3
OR8A1 WILD-TYPE 70 119 97
'OR8A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S8092.  Gene #778: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR8A1 MUTATED 1 0 0 1 0 2 0 0 0
OR8A1 WILD-TYPE 40 26 30 28 39 67 20 14 22
'OR8A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S8093.  Gene #778: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR8A1 MUTATED 1 2 1 0
OR8A1 WILD-TYPE 99 70 71 121
'OR8A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.58

Table S8094.  Gene #778: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR8A1 MUTATED 1 1 2 0 0
OR8A1 WILD-TYPE 58 74 72 119 38
'OR8A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0718 (Fisher's exact test), Q value = 0.29

Table S8095.  Gene #778: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR8A1 MUTATED 0 3 1 0 0
OR8A1 WILD-TYPE 51 73 60 71 95
'OR8A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S8096.  Gene #778: 'OR8A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR8A1 MUTATED 1 1 1 1 0 0 0 0 0
OR8A1 WILD-TYPE 68 47 38 15 53 20 21 38 50
'RANBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S8097.  Gene #779: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RANBP1 MUTATED 0 2 4
RANBP1 WILD-TYPE 42 171 143
'RANBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S8098.  Gene #779: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RANBP1 MUTATED 3 0 3
RANBP1 WILD-TYPE 59 73 72
'RANBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.5

Table S8099.  Gene #779: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RANBP1 MUTATED 0 2 4
RANBP1 WILD-TYPE 70 118 96
'RANBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S8100.  Gene #779: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RANBP1 MUTATED 1 0 0 1 0 3 0 1 0
RANBP1 WILD-TYPE 40 26 30 28 39 66 20 13 22
'RANBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.14

Table S8101.  Gene #779: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RANBP1 MUTATED 1 4 1 0
RANBP1 WILD-TYPE 99 68 71 121

Figure S2295.  Get High-res Image Gene #779: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RANBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0883 (Fisher's exact test), Q value = 0.32

Table S8102.  Gene #779: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RANBP1 MUTATED 2 1 3 0 0
RANBP1 WILD-TYPE 57 74 71 119 38
'RANBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S8103.  Gene #779: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RANBP1 MUTATED 1 3 1 0 1
RANBP1 WILD-TYPE 50 73 60 71 94
'RANBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.73

Table S8104.  Gene #779: 'RANBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RANBP1 MUTATED 3 0 1 1 0 0 0 0 1
RANBP1 WILD-TYPE 66 48 38 15 53 20 21 38 49
'RBMX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.17

Table S8105.  Gene #780: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RBMX2 MUTATED 0 2 9
RBMX2 WILD-TYPE 42 171 138

Figure S2296.  Get High-res Image Gene #780: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBMX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S8106.  Gene #780: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RBMX2 MUTATED 3 1 6
RBMX2 WILD-TYPE 59 72 69
'RBMX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S8107.  Gene #780: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RBMX2 MUTATED 3 2 6
RBMX2 WILD-TYPE 67 118 94
'RBMX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S8108.  Gene #780: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RBMX2 MUTATED 2 1 0 1 2 4 1 0 0
RBMX2 WILD-TYPE 39 25 30 28 37 65 19 14 22
'RBMX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S8109.  Gene #780: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RBMX2 MUTATED 1 6 3 1
RBMX2 WILD-TYPE 99 66 69 120

Figure S2297.  Get High-res Image Gene #780: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RBMX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00306 (Fisher's exact test), Q value = 0.048

Table S8110.  Gene #780: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RBMX2 MUTATED 2 1 7 0 1
RBMX2 WILD-TYPE 57 74 67 119 37

Figure S2298.  Get High-res Image Gene #780: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBMX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S8111.  Gene #780: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RBMX2 MUTATED 0 3 2 3 3
RBMX2 WILD-TYPE 51 73 59 68 92
'RBMX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S8112.  Gene #780: 'RBMX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RBMX2 MUTATED 2 2 0 2 2 0 0 2 1
RBMX2 WILD-TYPE 67 46 39 14 51 20 21 36 49
'SLC35A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8113.  Gene #781: 'SLC35A5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC35A5 MUTATED 0 4 3
SLC35A5 WILD-TYPE 42 169 144
'SLC35A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.58

Table S8114.  Gene #781: 'SLC35A5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC35A5 MUTATED 4 2 1
SLC35A5 WILD-TYPE 58 71 74
'SLC35A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S8115.  Gene #781: 'SLC35A5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC35A5 MUTATED 1 1 4
SLC35A5 WILD-TYPE 69 119 96
'SLC35A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 0.85

Table S8116.  Gene #781: 'SLC35A5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC35A5 MUTATED 1 2 0 0 0 2 0 0 1
SLC35A5 WILD-TYPE 40 24 30 29 39 67 20 14 21
'SLC35A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.94

Table S8117.  Gene #781: 'SLC35A5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC35A5 MUTATED 3 1 2 1
SLC35A5 WILD-TYPE 97 71 70 120
'SLC35A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S8118.  Gene #781: 'SLC35A5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC35A5 MUTATED 3 1 2 1 0
SLC35A5 WILD-TYPE 56 74 72 118 38
'SLC35A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S8119.  Gene #781: 'SLC35A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC35A5 MUTATED 0 3 2 1 1
SLC35A5 WILD-TYPE 51 73 59 70 94
'SLC35A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S8120.  Gene #781: 'SLC35A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC35A5 MUTATED 2 1 0 1 1 0 0 0 2
SLC35A5 WILD-TYPE 67 47 39 15 52 20 21 38 48
'RAD51AP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0746 (Fisher's exact test), Q value = 0.3

Table S8121.  Gene #782: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RAD51AP2 MUTATED 3 0 0 2 0
RAD51AP2 WILD-TYPE 29 18 46 25 23
'RAD51AP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S8122.  Gene #782: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RAD51AP2 MUTATED 3 1 1
RAD51AP2 WILD-TYPE 40 66 35
'RAD51AP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.01

Table S8123.  Gene #782: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RAD51AP2 MUTATED 0 1 14
RAD51AP2 WILD-TYPE 42 172 133

Figure S2299.  Get High-res Image Gene #782: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00855 (Fisher's exact test), Q value = 0.087

Table S8124.  Gene #782: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RAD51AP2 MUTATED 4 0 8
RAD51AP2 WILD-TYPE 58 73 67

Figure S2300.  Get High-res Image Gene #782: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.2

Table S8125.  Gene #782: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RAD51AP2 MUTATED 1 3 9
RAD51AP2 WILD-TYPE 69 117 91

Figure S2301.  Get High-res Image Gene #782: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0652 (Fisher's exact test), Q value = 0.28

Table S8126.  Gene #782: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RAD51AP2 MUTATED 0 0 1 0 2 8 2 0 0
RAD51AP2 WILD-TYPE 41 26 29 29 37 61 18 14 22
'RAD51AP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0524 (Fisher's exact test), Q value = 0.25

Table S8127.  Gene #782: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RAD51AP2 MUTATED 1 7 3 5
RAD51AP2 WILD-TYPE 99 65 69 116
'RAD51AP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0083 (Fisher's exact test), Q value = 0.086

Table S8128.  Gene #782: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RAD51AP2 MUTATED 0 3 8 2 3
RAD51AP2 WILD-TYPE 59 72 66 117 35

Figure S2302.  Get High-res Image Gene #782: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.28

Table S8129.  Gene #782: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RAD51AP2 MUTATED 1 8 1 1 4
RAD51AP2 WILD-TYPE 50 68 60 70 91
'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S8130.  Gene #782: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RAD51AP2 MUTATED 6 1 0 1 3 1 0 2 1
RAD51AP2 WILD-TYPE 63 47 39 15 50 19 21 36 49
'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S8131.  Gene #782: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RAD51AP2 MUTATED 1 0 1 0 1 0
RAD51AP2 WILD-TYPE 12 16 13 11 10 9
'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S8132.  Gene #782: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RAD51AP2 MUTATED 0 0 0 0 0 1 1 0 1
RAD51AP2 WILD-TYPE 11 7 7 9 8 6 10 9 4
'INADL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S8133.  Gene #783: 'INADL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
INADL MUTATED 1 0 12
INADL WILD-TYPE 41 173 135

Figure S2303.  Get High-res Image Gene #783: 'INADL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'INADL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.21

Table S8134.  Gene #783: 'INADL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
INADL MUTATED 4 0 6
INADL WILD-TYPE 58 73 69

Figure S2304.  Get High-res Image Gene #783: 'INADL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'INADL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S8135.  Gene #783: 'INADL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
INADL MUTATED 2 3 6
INADL WILD-TYPE 68 117 94
'INADL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S8136.  Gene #783: 'INADL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
INADL MUTATED 1 0 1 1 1 5 1 1 0
INADL WILD-TYPE 40 26 29 28 38 64 19 13 22
'INADL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0705 (Fisher's exact test), Q value = 0.29

Table S8137.  Gene #783: 'INADL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
INADL MUTATED 1 6 3 3
INADL WILD-TYPE 99 66 69 118
'INADL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00172 (Fisher's exact test), Q value = 0.034

Table S8138.  Gene #783: 'INADL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
INADL MUTATED 1 2 7 0 3
INADL WILD-TYPE 58 73 67 119 35

Figure S2305.  Get High-res Image Gene #783: 'INADL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'INADL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0562 (Fisher's exact test), Q value = 0.25

Table S8139.  Gene #783: 'INADL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
INADL MUTATED 0 7 1 1 4
INADL WILD-TYPE 51 69 60 70 91
'INADL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S8140.  Gene #783: 'INADL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
INADL MUTATED 4 3 0 1 2 0 0 2 1
INADL WILD-TYPE 65 45 39 15 51 20 21 36 49
'INADL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S8141.  Gene #783: 'INADL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
INADL MUTATED 1 1 0 0 1 0
INADL WILD-TYPE 12 15 14 11 10 9
'INADL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8142.  Gene #783: 'INADL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
INADL MUTATED 1 0 0 0 0 0 1 1 0
INADL WILD-TYPE 10 7 7 9 8 7 10 8 5
'LEF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S8143.  Gene #784: 'LEF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LEF1 MUTATED 3 0 1 1 0
LEF1 WILD-TYPE 29 18 45 26 23
'LEF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0515 (Fisher's exact test), Q value = 0.24

Table S8144.  Gene #784: 'LEF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LEF1 MUTATED 3 0 2
LEF1 WILD-TYPE 40 67 34
'LEF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0857 (Fisher's exact test), Q value = 0.32

Table S8145.  Gene #784: 'LEF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LEF1 MUTATED 1 1 6
LEF1 WILD-TYPE 41 172 141
'LEF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S8146.  Gene #784: 'LEF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LEF1 MUTATED 2 0 2
LEF1 WILD-TYPE 60 73 73
'LEF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.99

Table S8147.  Gene #784: 'LEF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LEF1 MUTATED 2 2 3
LEF1 WILD-TYPE 68 118 97
'LEF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.84

Table S8148.  Gene #784: 'LEF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LEF1 MUTATED 3 1 0 0 1 1 1 0 0
LEF1 WILD-TYPE 38 25 30 29 38 68 19 14 22
'LEF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 0.34

Table S8149.  Gene #784: 'LEF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LEF1 MUTATED 0 1 2 6
LEF1 WILD-TYPE 100 71 70 115
'LEF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S8150.  Gene #784: 'LEF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LEF1 MUTATED 1 0 2 3 3
LEF1 WILD-TYPE 58 75 72 116 35
'LEF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S8151.  Gene #784: 'LEF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LEF1 MUTATED 0 2 2 2 3
LEF1 WILD-TYPE 51 74 59 69 92
'LEF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S8152.  Gene #784: 'LEF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LEF1 MUTATED 1 2 0 0 2 0 1 1 2
LEF1 WILD-TYPE 68 46 39 16 51 20 20 37 48
'SLC2A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S8153.  Gene #785: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC2A3 MUTATED 0 3 8
SLC2A3 WILD-TYPE 42 170 139
'SLC2A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.92

Table S8154.  Gene #785: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC2A3 MUTATED 4 2 4
SLC2A3 WILD-TYPE 58 71 71
'SLC2A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8155.  Gene #785: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC2A3 MUTATED 2 4 4
SLC2A3 WILD-TYPE 68 116 96
'SLC2A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S8156.  Gene #785: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC2A3 MUTATED 0 1 1 2 0 4 0 2 0
SLC2A3 WILD-TYPE 41 25 29 27 39 65 20 12 22
'SLC2A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 0.19

Table S8157.  Gene #785: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC2A3 MUTATED 2 6 2 1
SLC2A3 WILD-TYPE 98 66 70 120

Figure S2306.  Get High-res Image Gene #785: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC2A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0157 (Fisher's exact test), Q value = 0.12

Table S8158.  Gene #785: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC2A3 MUTATED 1 2 7 1 0
SLC2A3 WILD-TYPE 58 73 67 118 38

Figure S2307.  Get High-res Image Gene #785: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC2A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S8159.  Gene #785: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC2A3 MUTATED 2 5 1 1 2
SLC2A3 WILD-TYPE 49 71 60 70 93
'SLC2A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S8160.  Gene #785: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC2A3 MUTATED 6 0 0 1 1 1 0 1 1
SLC2A3 WILD-TYPE 63 48 39 15 52 19 21 37 49
'SLC2A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S8161.  Gene #785: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLC2A3 MUTATED 0 0 2 1 2 0
SLC2A3 WILD-TYPE 13 16 12 10 9 9
'SLC2A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S8162.  Gene #785: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLC2A3 MUTATED 0 0 0 1 1 1 1 1 0
SLC2A3 WILD-TYPE 11 7 7 8 7 6 10 8 5
'MLL4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 0.16

Table S8163.  Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MLL4 MUTATED 5 0 0 2 2
MLL4 WILD-TYPE 27 18 46 25 21

Figure S2308.  Get High-res Image Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MLL4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 0.23

Table S8164.  Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MLL4 MUTATED 5 1 3
MLL4 WILD-TYPE 38 66 33

Figure S2309.  Get High-res Image Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S8165.  Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MLL4 MUTATED 2 3 28
MLL4 WILD-TYPE 40 170 119

Figure S2310.  Get High-res Image Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S8166.  Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MLL4 MUTATED 6 1 17
MLL4 WILD-TYPE 56 72 58

Figure S2311.  Get High-res Image Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MLL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 0.27

Table S8167.  Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MLL4 MUTATED 3 10 15
MLL4 WILD-TYPE 67 110 85
'MLL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00699 (Fisher's exact test), Q value = 0.078

Table S8168.  Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MLL4 MUTATED 0 0 2 3 7 12 2 2 0
MLL4 WILD-TYPE 41 26 28 26 32 57 18 12 22

Figure S2312.  Get High-res Image Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S8169.  Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MLL4 MUTATED 3 17 5 8
MLL4 WILD-TYPE 97 55 67 113

Figure S2313.  Get High-res Image Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MLL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S8170.  Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MLL4 MUTATED 1 3 21 3 5
MLL4 WILD-TYPE 58 72 53 116 33

Figure S2314.  Get High-res Image Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S8171.  Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MLL4 MUTATED 2 19 1 6 5
MLL4 WILD-TYPE 49 57 60 65 90

Figure S2315.  Get High-res Image Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S8172.  Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MLL4 MUTATED 5 4 1 10 4 3 1 4 1
MLL4 WILD-TYPE 64 44 38 6 49 17 20 34 49

Figure S2316.  Get High-res Image Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.11

Table S8173.  Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MLL4 MUTATED 1 0 3 0 4 0
MLL4 WILD-TYPE 12 16 11 11 7 9

Figure S2317.  Get High-res Image Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S8174.  Gene #786: 'MLL4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MLL4 MUTATED 0 0 0 2 1 1 3 1 0
MLL4 WILD-TYPE 11 7 7 7 7 6 8 8 5
'MTA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 0.33

Table S8175.  Gene #787: 'MTA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MTA2 MUTATED 3 1 0 0 1
MTA2 WILD-TYPE 29 17 46 27 22
'MTA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S8176.  Gene #787: 'MTA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MTA2 MUTATED 4 0 1
MTA2 WILD-TYPE 39 67 35

Figure S2318.  Get High-res Image Gene #787: 'MTA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MTA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0712 (Fisher's exact test), Q value = 0.29

Table S8177.  Gene #787: 'MTA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MTA2 MUTATED 0 3 9
MTA2 WILD-TYPE 42 170 138
'MTA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S8178.  Gene #787: 'MTA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MTA2 MUTATED 3 0 4
MTA2 WILD-TYPE 59 73 71
'MTA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.64

Table S8179.  Gene #787: 'MTA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MTA2 MUTATED 4 2 4
MTA2 WILD-TYPE 66 118 96
'MTA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S8180.  Gene #787: 'MTA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MTA2 MUTATED 0 1 0 1 4 3 0 0 1
MTA2 WILD-TYPE 41 25 30 28 35 66 20 14 21
'MTA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.76

Table S8181.  Gene #787: 'MTA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MTA2 MUTATED 1 3 3 5
MTA2 WILD-TYPE 99 69 69 116
'MTA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0352 (Fisher's exact test), Q value = 0.2

Table S8182.  Gene #787: 'MTA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MTA2 MUTATED 2 0 5 2 3
MTA2 WILD-TYPE 57 75 69 117 35

Figure S2319.  Get High-res Image Gene #787: 'MTA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MTA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S8183.  Gene #787: 'MTA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MTA2 MUTATED 0 4 1 2 5
MTA2 WILD-TYPE 51 72 60 69 90
'MTA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0606 (Fisher's exact test), Q value = 0.26

Table S8184.  Gene #787: 'MTA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MTA2 MUTATED 1 3 0 1 1 0 0 5 1
MTA2 WILD-TYPE 68 45 39 15 52 20 21 33 49
'MTA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S8185.  Gene #787: 'MTA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MTA2 MUTATED 0 1 1 0 1 0
MTA2 WILD-TYPE 13 15 13 11 10 9
'MTA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.99

Table S8186.  Gene #787: 'MTA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MTA2 MUTATED 0 1 0 0 1 0 1 0 0
MTA2 WILD-TYPE 11 6 7 9 7 7 10 9 5
'MDN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S8187.  Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MDN1 MUTATED 14 1 2 2 2
MDN1 WILD-TYPE 18 17 44 25 21

Figure S2320.  Get High-res Image Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MDN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S8188.  Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MDN1 MUTATED 15 3 3
MDN1 WILD-TYPE 28 64 33

Figure S2321.  Get High-res Image Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MDN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S8189.  Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MDN1 MUTATED 3 10 39
MDN1 WILD-TYPE 39 163 108

Figure S2322.  Get High-res Image Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MDN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.24

Table S8190.  Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MDN1 MUTATED 12 5 14
MDN1 WILD-TYPE 50 68 61

Figure S2323.  Get High-res Image Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MDN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00853 (Fisher's exact test), Q value = 0.087

Table S8191.  Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MDN1 MUTATED 5 12 22
MDN1 WILD-TYPE 65 108 78

Figure S2324.  Get High-res Image Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MDN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.54

Table S8192.  Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MDN1 MUTATED 3 4 2 5 6 13 5 0 1
MDN1 WILD-TYPE 38 22 28 24 33 56 15 14 21
'MDN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S8193.  Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MDN1 MUTATED 7 16 8 22
MDN1 WILD-TYPE 93 56 64 99

Figure S2325.  Get High-res Image Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MDN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S8194.  Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MDN1 MUTATED 3 11 17 8 14
MDN1 WILD-TYPE 56 64 57 111 24

Figure S2326.  Get High-res Image Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MDN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0053

Table S8195.  Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MDN1 MUTATED 2 21 2 8 18
MDN1 WILD-TYPE 49 55 59 63 77

Figure S2327.  Get High-res Image Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MDN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00252 (Fisher's exact test), Q value = 0.043

Table S8196.  Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MDN1 MUTATED 13 6 0 5 5 3 4 11 4
MDN1 WILD-TYPE 56 42 39 11 48 17 17 27 46

Figure S2328.  Get High-res Image Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MDN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.002 (Fisher's exact test), Q value = 0.038

Table S8197.  Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MDN1 MUTATED 0 1 4 0 5 0
MDN1 WILD-TYPE 13 15 10 11 6 9

Figure S2329.  Get High-res Image Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MDN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0778 (Fisher's exact test), Q value = 0.3

Table S8198.  Gene #788: 'MDN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MDN1 MUTATED 1 0 0 3 2 0 4 0 0
MDN1 WILD-TYPE 10 7 7 6 6 7 7 9 5
'OR10G4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0619 (Fisher's exact test), Q value = 0.27

Table S8199.  Gene #789: 'OR10G4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR10G4 MUTATED 1 0 4
OR10G4 WILD-TYPE 41 173 143
'OR10G4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S8200.  Gene #789: 'OR10G4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR10G4 MUTATED 1 0 2
OR10G4 WILD-TYPE 61 73 73
'OR10G4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8201.  Gene #789: 'OR10G4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR10G4 MUTATED 1 2 2
OR10G4 WILD-TYPE 69 118 98
'OR10G4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S8202.  Gene #789: 'OR10G4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR10G4 MUTATED 0 0 0 0 2 2 1 0 0
OR10G4 WILD-TYPE 41 26 30 29 37 67 19 14 22
'OR10G4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S8203.  Gene #789: 'OR10G4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR10G4 MUTATED 0 2 1 2
OR10G4 WILD-TYPE 100 70 71 119
'OR10G4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0364 (Fisher's exact test), Q value = 0.2

Table S8204.  Gene #789: 'OR10G4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR10G4 MUTATED 1 0 2 0 2
OR10G4 WILD-TYPE 58 75 72 119 36

Figure S2330.  Get High-res Image Gene #789: 'OR10G4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR10G4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S8205.  Gene #789: 'OR10G4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR10G4 MUTATED 1 1 1 0 1
OR10G4 WILD-TYPE 50 75 60 71 94
'OR10G4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S8206.  Gene #789: 'OR10G4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR10G4 MUTATED 0 0 0 1 2 0 0 1 0
OR10G4 WILD-TYPE 69 48 39 15 51 20 21 37 50
'NEB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.013

Table S8207.  Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NEB MUTATED 10 2 1 2 0
NEB WILD-TYPE 22 16 45 25 23

Figure S2331.  Get High-res Image Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NEB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00476 (Fisher's exact test), Q value = 0.064

Table S8208.  Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NEB MUTATED 10 4 1
NEB WILD-TYPE 33 63 35

Figure S2332.  Get High-res Image Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NEB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00055 (Fisher's exact test), Q value = 0.017

Table S8209.  Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NEB MUTATED 6 15 36
NEB WILD-TYPE 36 158 111

Figure S2333.  Get High-res Image Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NEB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S8210.  Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NEB MUTATED 17 10 15
NEB WILD-TYPE 45 63 60
'NEB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 0.21

Table S8211.  Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NEB MUTATED 5 24 19
NEB WILD-TYPE 65 96 81

Figure S2334.  Get High-res Image Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NEB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.88

Table S8212.  Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NEB MUTATED 5 4 3 6 9 13 5 2 1
NEB WILD-TYPE 36 22 27 23 30 56 15 12 21
'NEB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S8213.  Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NEB MUTATED 9 19 13 16
NEB WILD-TYPE 91 53 59 105

Figure S2335.  Get High-res Image Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NEB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S8214.  Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NEB MUTATED 5 14 21 7 10
NEB WILD-TYPE 54 61 53 112 28

Figure S2336.  Get High-res Image Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NEB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.27

Table S8215.  Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NEB MUTATED 9 20 7 7 13
NEB WILD-TYPE 42 56 54 64 82
'NEB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S8216.  Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NEB MUTATED 14 7 1 6 10 5 3 7 3
NEB WILD-TYPE 55 41 38 10 43 15 18 31 47

Figure S2337.  Get High-res Image Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NEB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.5

Table S8217.  Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NEB MUTATED 2 4 3 0 5 2
NEB WILD-TYPE 11 12 11 11 6 7
'NEB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S8218.  Gene #790: 'NEB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NEB MUTATED 3 1 0 5 2 1 3 1 0
NEB WILD-TYPE 8 6 7 4 6 6 8 8 5
'PAXIP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0975 (Fisher's exact test), Q value = 0.34

Table S8219.  Gene #791: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PAXIP1 MUTATED 3 0 0 1 0
PAXIP1 WILD-TYPE 29 18 46 26 23
'PAXIP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00972 (Fisher's exact test), Q value = 0.093

Table S8220.  Gene #791: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PAXIP1 MUTATED 4 0 0
PAXIP1 WILD-TYPE 39 67 36

Figure S2338.  Get High-res Image Gene #791: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PAXIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S8221.  Gene #791: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PAXIP1 MUTATED 2 4 10
PAXIP1 WILD-TYPE 40 169 137
'PAXIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S8222.  Gene #791: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PAXIP1 MUTATED 6 2 4
PAXIP1 WILD-TYPE 56 71 71
'PAXIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S8223.  Gene #791: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PAXIP1 MUTATED 1 3 7
PAXIP1 WILD-TYPE 69 117 93
'PAXIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S8224.  Gene #791: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PAXIP1 MUTATED 1 0 0 1 1 7 0 1 0
PAXIP1 WILD-TYPE 40 26 30 28 38 62 20 13 22
'PAXIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S8225.  Gene #791: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PAXIP1 MUTATED 3 4 5 4
PAXIP1 WILD-TYPE 97 68 67 117
'PAXIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S8226.  Gene #791: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PAXIP1 MUTATED 0 4 8 0 4
PAXIP1 WILD-TYPE 59 71 66 119 34

Figure S2339.  Get High-res Image Gene #791: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PAXIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S8227.  Gene #791: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PAXIP1 MUTATED 0 6 4 3 2
PAXIP1 WILD-TYPE 51 70 57 68 93
'PAXIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S8228.  Gene #791: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PAXIP1 MUTATED 4 4 1 1 3 0 1 1 0
PAXIP1 WILD-TYPE 65 44 38 15 50 20 20 37 50
'PAXIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.74

Table S8229.  Gene #791: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PAXIP1 MUTATED 1 1 3 0 2 0
PAXIP1 WILD-TYPE 12 15 11 11 9 9
'PAXIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0539 (Fisher's exact test), Q value = 0.25

Table S8230.  Gene #791: 'PAXIP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PAXIP1 MUTATED 0 0 0 0 2 3 1 1 0
PAXIP1 WILD-TYPE 11 7 7 9 6 4 10 8 5
'OSTM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.96

Table S8231.  Gene #792: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OSTM1 MUTATED 1 2 2
OSTM1 WILD-TYPE 41 171 145
'OSTM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S8232.  Gene #792: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OSTM1 MUTATED 0 2 3
OSTM1 WILD-TYPE 62 71 72
'OSTM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S8233.  Gene #792: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OSTM1 MUTATED 0 4 1
OSTM1 WILD-TYPE 70 116 99
'OSTM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.95

Table S8234.  Gene #792: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OSTM1 MUTATED 0 1 0 1 0 2 0 0 1
OSTM1 WILD-TYPE 41 25 30 28 39 67 20 14 21
'OSTM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0778 (Fisher's exact test), Q value = 0.3

Table S8235.  Gene #792: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OSTM1 MUTATED 1 3 1 0
OSTM1 WILD-TYPE 99 69 71 121
'OSTM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S8236.  Gene #792: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OSTM1 MUTATED 1 1 3 0 0
OSTM1 WILD-TYPE 58 74 71 119 38
'OSTM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.45

Table S8237.  Gene #792: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OSTM1 MUTATED 1 3 0 1 0
OSTM1 WILD-TYPE 50 73 61 70 95
'OSTM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00267 (Fisher's exact test), Q value = 0.044

Table S8238.  Gene #792: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OSTM1 MUTATED 1 0 0 3 1 0 0 0 0
OSTM1 WILD-TYPE 68 48 39 13 52 20 21 38 50

Figure S2340.  Get High-res Image Gene #792: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OSTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.051 (Fisher's exact test), Q value = 0.24

Table S8239.  Gene #792: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OSTM1 MUTATED 0 0 0 0 2 1
OSTM1 WILD-TYPE 13 16 14 11 9 8
'OSTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S8240.  Gene #792: 'OSTM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OSTM1 MUTATED 0 0 0 2 0 0 0 1 0
OSTM1 WILD-TYPE 11 7 7 7 8 7 11 8 5
'UGT1A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0855 (Fisher's exact test), Q value = 0.32

Table S8241.  Gene #793: 'UGT1A7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UGT1A7 MUTATED 1 1 6
UGT1A7 WILD-TYPE 41 172 141
'UGT1A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.98

Table S8242.  Gene #793: 'UGT1A7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UGT1A7 MUTATED 2 1 3
UGT1A7 WILD-TYPE 60 72 72
'UGT1A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S8243.  Gene #793: 'UGT1A7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UGT1A7 MUTATED 0 4 4
UGT1A7 WILD-TYPE 70 116 96
'UGT1A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S8244.  Gene #793: 'UGT1A7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UGT1A7 MUTATED 0 0 1 1 0 4 1 1 0
UGT1A7 WILD-TYPE 41 26 29 28 39 65 19 13 22
'UGT1A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.99

Table S8245.  Gene #793: 'UGT1A7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UGT1A7 MUTATED 2 3 1 2
UGT1A7 WILD-TYPE 98 69 71 119
'UGT1A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.55

Table S8246.  Gene #793: 'UGT1A7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UGT1A7 MUTATED 0 3 3 1 1
UGT1A7 WILD-TYPE 59 72 71 118 37
'UGT1A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8247.  Gene #793: 'UGT1A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UGT1A7 MUTATED 1 2 1 1 2
UGT1A7 WILD-TYPE 50 74 60 70 93
'UGT1A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S8248.  Gene #793: 'UGT1A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UGT1A7 MUTATED 1 1 1 1 0 2 0 0 1
UGT1A7 WILD-TYPE 68 47 38 15 53 18 21 38 49
'ZNF658 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.74

Table S8249.  Gene #794: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF658 MUTATED 3 0 1 1 0
ZNF658 WILD-TYPE 29 18 45 26 23
'ZNF658 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S8250.  Gene #794: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF658 MUTATED 3 1 1
ZNF658 WILD-TYPE 40 66 35
'ZNF658 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S8251.  Gene #794: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF658 MUTATED 1 4 5
ZNF658 WILD-TYPE 41 169 142
'ZNF658 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S8252.  Gene #794: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF658 MUTATED 1 2 3
ZNF658 WILD-TYPE 61 71 72
'ZNF658 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S8253.  Gene #794: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF658 MUTATED 1 2 3
ZNF658 WILD-TYPE 69 118 97
'ZNF658 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S8254.  Gene #794: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF658 MUTATED 2 0 0 1 1 2 0 0 0
ZNF658 WILD-TYPE 39 26 30 28 38 67 20 14 22
'ZNF658 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S8255.  Gene #794: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF658 MUTATED 3 1 2 4
ZNF658 WILD-TYPE 97 71 70 117
'ZNF658 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.73

Table S8256.  Gene #794: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF658 MUTATED 1 2 2 2 3
ZNF658 WILD-TYPE 58 73 72 117 35
'ZNF658 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.89

Table S8257.  Gene #794: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF658 MUTATED 3 1 1 1 3
ZNF658 WILD-TYPE 48 75 60 70 92
'ZNF658 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.88

Table S8258.  Gene #794: 'ZNF658 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF658 MUTATED 1 1 1 1 2 1 0 2 0
ZNF658 WILD-TYPE 68 47 38 15 51 19 21 36 50
'ESCO2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S8259.  Gene #795: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ESCO2 MUTATED 1 0 0 2 0
ESCO2 WILD-TYPE 31 18 46 25 23
'ESCO2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S8260.  Gene #795: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ESCO2 MUTATED 2 1 0
ESCO2 WILD-TYPE 41 66 36
'ESCO2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.16

Table S8261.  Gene #795: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ESCO2 MUTATED 1 1 8
ESCO2 WILD-TYPE 41 172 139

Figure S2341.  Get High-res Image Gene #795: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ESCO2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.18

Table S8262.  Gene #795: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ESCO2 MUTATED 5 0 2
ESCO2 WILD-TYPE 57 73 73

Figure S2342.  Get High-res Image Gene #795: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ESCO2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0695 (Fisher's exact test), Q value = 0.28

Table S8263.  Gene #795: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ESCO2 MUTATED 0 3 6
ESCO2 WILD-TYPE 70 117 94
'ESCO2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 0.93

Table S8264.  Gene #795: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ESCO2 MUTATED 1 0 1 0 1 4 2 0 0
ESCO2 WILD-TYPE 40 26 29 29 38 65 18 14 22
'ESCO2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0749 (Fisher's exact test), Q value = 0.3

Table S8265.  Gene #795: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ESCO2 MUTATED 0 4 3 3
ESCO2 WILD-TYPE 100 68 69 118
'ESCO2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S8266.  Gene #795: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ESCO2 MUTATED 2 1 4 1 2
ESCO2 WILD-TYPE 57 74 70 118 36
'ESCO2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.54

Table S8267.  Gene #795: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ESCO2 MUTATED 0 5 1 1 2
ESCO2 WILD-TYPE 51 71 60 70 93
'ESCO2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0462 (Fisher's exact test), Q value = 0.23

Table S8268.  Gene #795: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ESCO2 MUTATED 0 3 0 2 2 1 0 0 1
ESCO2 WILD-TYPE 69 45 39 14 51 19 21 38 49

Figure S2343.  Get High-res Image Gene #795: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SV2A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.53

Table S8269.  Gene #796: 'SV2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SV2A MUTATED 2 0 0 2 1
SV2A WILD-TYPE 30 18 46 25 22
'SV2A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S8270.  Gene #796: 'SV2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SV2A MUTATED 3 1 1
SV2A WILD-TYPE 40 66 35
'SV2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S8271.  Gene #796: 'SV2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SV2A MUTATED 3 4 14
SV2A WILD-TYPE 39 169 133

Figure S2344.  Get High-res Image Gene #796: 'SV2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SV2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S8272.  Gene #796: 'SV2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SV2A MUTATED 10 2 4
SV2A WILD-TYPE 52 71 71

Figure S2345.  Get High-res Image Gene #796: 'SV2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SV2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0197 (Fisher's exact test), Q value = 0.14

Table S8273.  Gene #796: 'SV2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SV2A MUTATED 1 6 12
SV2A WILD-TYPE 69 114 88

Figure S2346.  Get High-res Image Gene #796: 'SV2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SV2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S8274.  Gene #796: 'SV2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SV2A MUTATED 2 1 1 2 2 8 2 1 0
SV2A WILD-TYPE 39 25 29 27 37 61 18 13 22
'SV2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.65

Table S8275.  Gene #796: 'SV2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SV2A MUTATED 3 6 6 6
SV2A WILD-TYPE 97 66 66 115
'SV2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0503 (Fisher's exact test), Q value = 0.24

Table S8276.  Gene #796: 'SV2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SV2A MUTATED 3 2 10 4 2
SV2A WILD-TYPE 56 73 64 115 36
'SV2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S8277.  Gene #796: 'SV2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SV2A MUTATED 1 8 4 2 6
SV2A WILD-TYPE 50 68 57 69 89
'SV2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S8278.  Gene #796: 'SV2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SV2A MUTATED 5 5 1 2 0 2 2 3 1
SV2A WILD-TYPE 64 43 38 14 53 18 19 35 49
'SV2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.52

Table S8279.  Gene #796: 'SV2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SV2A MUTATED 0 1 0 0 2 0
SV2A WILD-TYPE 13 15 14 11 9 9
'SV2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S8280.  Gene #796: 'SV2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SV2A MUTATED 1 0 0 1 0 1 0 0 0
SV2A WILD-TYPE 10 7 7 8 8 6 11 9 5
'PSMB8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 0.34

Table S8281.  Gene #797: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PSMB8 MUTATED 1 0 3
PSMB8 WILD-TYPE 41 173 144
'PSMB8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S8282.  Gene #797: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PSMB8 MUTATED 1 0 3
PSMB8 WILD-TYPE 61 73 72
'PSMB8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.98

Table S8283.  Gene #797: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PSMB8 MUTATED 0 2 2
PSMB8 WILD-TYPE 70 118 98
'PSMB8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S8284.  Gene #797: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PSMB8 MUTATED 0 0 0 2 0 1 1 0 0
PSMB8 WILD-TYPE 41 26 30 27 39 68 19 14 22
'PSMB8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00269 (Fisher's exact test), Q value = 0.044

Table S8285.  Gene #797: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PSMB8 MUTATED 0 4 0 0
PSMB8 WILD-TYPE 100 68 72 121

Figure S2347.  Get High-res Image Gene #797: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PSMB8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.087 (Fisher's exact test), Q value = 0.32

Table S8286.  Gene #797: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PSMB8 MUTATED 0 1 3 0 0
PSMB8 WILD-TYPE 59 74 71 119 38
'PSMB8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S8287.  Gene #797: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PSMB8 MUTATED 0 3 0 0 1
PSMB8 WILD-TYPE 51 73 61 71 94
'PSMB8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.16

Table S8288.  Gene #797: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PSMB8 MUTATED 0 1 0 2 0 0 0 0 1
PSMB8 WILD-TYPE 69 47 39 14 53 20 21 38 49

Figure S2348.  Get High-res Image Gene #797: 'PSMB8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CAMSAP1L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00895 (Fisher's exact test), Q value = 0.089

Table S8289.  Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CAMSAP1L1 MUTATED 4 0 0 0 0
CAMSAP1L1 WILD-TYPE 28 18 46 27 23

Figure S2349.  Get High-res Image Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CAMSAP1L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.096

Table S8290.  Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CAMSAP1L1 MUTATED 4 0 0
CAMSAP1L1 WILD-TYPE 39 67 36

Figure S2350.  Get High-res Image Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CAMSAP1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.011

Table S8291.  Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CAMSAP1L1 MUTATED 0 3 17
CAMSAP1L1 WILD-TYPE 42 170 130

Figure S2351.  Get High-res Image Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CAMSAP1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S8292.  Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CAMSAP1L1 MUTATED 10 2 6
CAMSAP1L1 WILD-TYPE 52 71 69

Figure S2352.  Get High-res Image Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CAMSAP1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S8293.  Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CAMSAP1L1 MUTATED 3 7 10
CAMSAP1L1 WILD-TYPE 67 113 90
'CAMSAP1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0371 (Fisher's exact test), Q value = 0.2

Table S8294.  Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CAMSAP1L1 MUTATED 2 1 0 1 2 6 6 1 1
CAMSAP1L1 WILD-TYPE 39 25 30 28 37 63 14 13 21

Figure S2353.  Get High-res Image Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CAMSAP1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S8295.  Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CAMSAP1L1 MUTATED 2 6 9 4
CAMSAP1L1 WILD-TYPE 98 66 63 117

Figure S2354.  Get High-res Image Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CAMSAP1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S8296.  Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CAMSAP1L1 MUTATED 3 3 11 0 4
CAMSAP1L1 WILD-TYPE 56 72 63 119 34

Figure S2355.  Get High-res Image Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CAMSAP1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.11

Table S8297.  Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CAMSAP1L1 MUTATED 3 10 3 0 5
CAMSAP1L1 WILD-TYPE 48 66 58 71 90

Figure S2356.  Get High-res Image Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CAMSAP1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S8298.  Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CAMSAP1L1 MUTATED 2 6 2 3 2 1 1 3 1
CAMSAP1L1 WILD-TYPE 67 42 37 13 51 19 20 35 49
'CAMSAP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S8299.  Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CAMSAP1L1 MUTATED 0 1 0 0 2 0
CAMSAP1L1 WILD-TYPE 13 15 14 11 9 9
'CAMSAP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S8300.  Gene #798: 'CAMSAP1L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CAMSAP1L1 MUTATED 1 0 0 1 1 0 0 0 0
CAMSAP1L1 WILD-TYPE 10 7 7 8 7 7 11 9 5
'MRPS18B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8301.  Gene #799: 'MRPS18B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MRPS18B MUTATED 0 2 2
MRPS18B WILD-TYPE 42 171 145
'MRPS18B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S8302.  Gene #799: 'MRPS18B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MRPS18B MUTATED 0 1 2
MRPS18B WILD-TYPE 62 72 73
'MRPS18B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S8303.  Gene #799: 'MRPS18B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MRPS18B MUTATED 2 1 0 1
MRPS18B WILD-TYPE 98 71 72 120
'MRPS18B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S8304.  Gene #799: 'MRPS18B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MRPS18B MUTATED 0 2 1 0 1
MRPS18B WILD-TYPE 59 73 73 119 37
'MRPS18B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S8305.  Gene #799: 'MRPS18B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MRPS18B MUTATED 1 2 0 0 1
MRPS18B WILD-TYPE 50 74 61 71 94
'MRPS18B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S8306.  Gene #799: 'MRPS18B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MRPS18B MUTATED 0 0 1 0 1 1 0 1 0
MRPS18B WILD-TYPE 69 48 38 16 52 19 21 37 50
'INSRR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S8307.  Gene #800: 'INSRR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
INSRR MUTATED 4 0 1 1 0
INSRR WILD-TYPE 28 18 45 26 23
'INSRR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.086 (Fisher's exact test), Q value = 0.32

Table S8308.  Gene #800: 'INSRR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
INSRR MUTATED 4 2 0
INSRR WILD-TYPE 39 65 36
'INSRR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.17

Table S8309.  Gene #800: 'INSRR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
INSRR MUTATED 0 10 16
INSRR WILD-TYPE 42 163 131

Figure S2357.  Get High-res Image Gene #800: 'INSRR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'INSRR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S8310.  Gene #800: 'INSRR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
INSRR MUTATED 9 4 6
INSRR WILD-TYPE 53 69 69
'INSRR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0075 (Fisher's exact test), Q value = 0.081

Table S8311.  Gene #800: 'INSRR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
INSRR MUTATED 2 3 12
INSRR WILD-TYPE 68 117 88

Figure S2358.  Get High-res Image Gene #800: 'INSRR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'INSRR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S8312.  Gene #800: 'INSRR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
INSRR MUTATED 2 1 1 2 0 8 3 0 0
INSRR WILD-TYPE 39 25 29 27 39 61 17 14 22
'INSRR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S8313.  Gene #800: 'INSRR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
INSRR MUTATED 8 4 7 7
INSRR WILD-TYPE 92 68 65 114
'INSRR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0206 (Fisher's exact test), Q value = 0.15

Table S8314.  Gene #800: 'INSRR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
INSRR MUTATED 2 7 9 3 5
INSRR WILD-TYPE 57 68 65 116 33

Figure S2359.  Get High-res Image Gene #800: 'INSRR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'INSRR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 0.24

Table S8315.  Gene #800: 'INSRR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
INSRR MUTATED 3 11 4 1 7
INSRR WILD-TYPE 48 65 57 70 88

Figure S2360.  Get High-res Image Gene #800: 'INSRR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'INSRR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0516 (Fisher's exact test), Q value = 0.24

Table S8316.  Gene #800: 'INSRR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
INSRR MUTATED 3 6 3 3 2 2 0 6 1
INSRR WILD-TYPE 66 42 36 13 51 18 21 32 49
'INSRR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S8317.  Gene #800: 'INSRR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
INSRR MUTATED 1 0 1 0 3 1
INSRR WILD-TYPE 12 16 13 11 8 8
'INSRR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S8318.  Gene #800: 'INSRR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
INSRR MUTATED 0 0 0 0 1 1 3 1 0
INSRR WILD-TYPE 11 7 7 9 7 6 8 8 5
'PAAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S8319.  Gene #801: 'PAAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PAAF1 MUTATED 0 2 3
PAAF1 WILD-TYPE 42 171 144
'PAAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.86

Table S8320.  Gene #801: 'PAAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PAAF1 MUTATED 1 3 1
PAAF1 WILD-TYPE 61 70 74
'PAAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S8321.  Gene #801: 'PAAF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PAAF1 MUTATED 0 3 2
PAAF1 WILD-TYPE 70 117 98
'PAAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S8322.  Gene #801: 'PAAF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PAAF1 MUTATED 0 1 1 1 0 1 1 0 0
PAAF1 WILD-TYPE 41 25 29 28 39 68 19 14 22
'PAAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S8323.  Gene #801: 'PAAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PAAF1 MUTATED 3 2 0 0
PAAF1 WILD-TYPE 97 70 72 121
'PAAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S8324.  Gene #801: 'PAAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PAAF1 MUTATED 1 3 1 0 0
PAAF1 WILD-TYPE 58 72 73 119 38
'PAAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S8325.  Gene #801: 'PAAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PAAF1 MUTATED 0 2 1 1 1
PAAF1 WILD-TYPE 51 74 60 70 94
'PAAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.46

Table S8326.  Gene #801: 'PAAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PAAF1 MUTATED 0 1 2 1 0 0 0 0 1
PAAF1 WILD-TYPE 69 47 37 15 53 20 21 38 49
'JAK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00933 (Fisher's exact test), Q value = 0.091

Table S8327.  Gene #802: 'JAK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
JAK3 MUTATED 4 0 0 0 0
JAK3 WILD-TYPE 28 18 46 27 23

Figure S2361.  Get High-res Image Gene #802: 'JAK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'JAK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.01 (Fisher's exact test), Q value = 0.094

Table S8328.  Gene #802: 'JAK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
JAK3 MUTATED 4 0 0
JAK3 WILD-TYPE 39 67 36

Figure S2362.  Get High-res Image Gene #802: 'JAK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'JAK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0756 (Fisher's exact test), Q value = 0.3

Table S8329.  Gene #802: 'JAK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
JAK3 MUTATED 2 7 15
JAK3 WILD-TYPE 40 166 132
'JAK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S8330.  Gene #802: 'JAK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
JAK3 MUTATED 5 6 8
JAK3 WILD-TYPE 57 67 67
'JAK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S8331.  Gene #802: 'JAK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
JAK3 MUTATED 2 6 8
JAK3 WILD-TYPE 68 114 92
'JAK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S8332.  Gene #802: 'JAK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
JAK3 MUTATED 3 0 2 1 0 7 0 2 1
JAK3 WILD-TYPE 38 26 28 28 39 62 20 12 21
'JAK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S8333.  Gene #802: 'JAK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
JAK3 MUTATED 9 6 3 6
JAK3 WILD-TYPE 91 66 69 115
'JAK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00597 (Fisher's exact test), Q value = 0.073

Table S8334.  Gene #802: 'JAK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
JAK3 MUTATED 5 6 7 1 5
JAK3 WILD-TYPE 54 69 67 118 33

Figure S2363.  Get High-res Image Gene #802: 'JAK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'JAK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00804 (Fisher's exact test), Q value = 0.084

Table S8335.  Gene #802: 'JAK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
JAK3 MUTATED 4 10 5 0 4
JAK3 WILD-TYPE 47 66 56 71 91

Figure S2364.  Get High-res Image Gene #802: 'JAK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'JAK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0655 (Fisher's exact test), Q value = 0.28

Table S8336.  Gene #802: 'JAK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
JAK3 MUTATED 3 5 2 4 4 1 1 3 0
JAK3 WILD-TYPE 66 43 37 12 49 19 20 35 50
'JAK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.75

Table S8337.  Gene #802: 'JAK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
JAK3 MUTATED 0 2 0 0 1 0
JAK3 WILD-TYPE 13 14 14 11 10 9
'JAK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S8338.  Gene #802: 'JAK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
JAK3 MUTATED 1 1 0 1 0 0 0 0 0
JAK3 WILD-TYPE 10 6 7 8 8 7 11 9 5
'TMEM45A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S8339.  Gene #803: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMEM45A MUTATED 1 1 2
TMEM45A WILD-TYPE 41 172 145
'TMEM45A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S8340.  Gene #803: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TMEM45A MUTATED 1 0 3
TMEM45A WILD-TYPE 61 73 72
'TMEM45A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8341.  Gene #803: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TMEM45A MUTATED 1 2 1
TMEM45A WILD-TYPE 69 118 99
'TMEM45A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S8342.  Gene #803: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TMEM45A MUTATED 1 0 0 1 0 1 0 1 0
TMEM45A WILD-TYPE 40 26 30 28 39 68 20 13 22
'TMEM45A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0444 (Fisher's exact test), Q value = 0.22

Table S8343.  Gene #803: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMEM45A MUTATED 0 2 2 0
TMEM45A WILD-TYPE 100 70 70 121

Figure S2365.  Get High-res Image Gene #803: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TMEM45A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0447 (Fisher's exact test), Q value = 0.22

Table S8344.  Gene #803: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMEM45A MUTATED 1 0 3 0 0
TMEM45A WILD-TYPE 58 75 71 119 38

Figure S2366.  Get High-res Image Gene #803: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TMEM45A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0702 (Fisher's exact test), Q value = 0.29

Table S8345.  Gene #803: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMEM45A MUTATED 0 3 1 0 0
TMEM45A WILD-TYPE 51 73 60 71 95
'TMEM45A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S8346.  Gene #803: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMEM45A MUTATED 2 0 0 1 1 0 0 0 0
TMEM45A WILD-TYPE 67 48 39 15 52 20 21 38 50
'TMEM45A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S8347.  Gene #803: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TMEM45A MUTATED 0 0 2 0 1 0
TMEM45A WILD-TYPE 13 16 12 11 10 9
'TMEM45A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S8348.  Gene #803: 'TMEM45A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TMEM45A MUTATED 0 0 0 1 1 0 1 0 0
TMEM45A WILD-TYPE 11 7 7 8 7 7 10 9 5
'UAP1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 0.95

Table S8349.  Gene #804: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UAP1L1 MUTATED 0 3 4
UAP1L1 WILD-TYPE 42 170 143
'UAP1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.4

Table S8350.  Gene #804: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UAP1L1 MUTATED 0 1 4
UAP1L1 WILD-TYPE 62 72 71
'UAP1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8351.  Gene #804: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UAP1L1 MUTATED 1 2 1
UAP1L1 WILD-TYPE 69 118 99
'UAP1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S8352.  Gene #804: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UAP1L1 MUTATED 1 0 0 2 0 1 0 0 0
UAP1L1 WILD-TYPE 40 26 30 27 39 68 20 14 22
'UAP1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S8353.  Gene #804: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UAP1L1 MUTATED 2 0 3 2
UAP1L1 WILD-TYPE 98 72 69 119
'UAP1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S8354.  Gene #804: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UAP1L1 MUTATED 0 2 3 1 1
UAP1L1 WILD-TYPE 59 73 71 118 37
'UAP1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S8355.  Gene #804: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UAP1L1 MUTATED 1 1 1 3 1
UAP1L1 WILD-TYPE 50 75 60 68 94
'UAP1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S8356.  Gene #804: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UAP1L1 MUTATED 0 2 0 0 3 0 0 2 0
UAP1L1 WILD-TYPE 69 46 39 16 50 20 21 36 50
'UAP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8357.  Gene #804: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
UAP1L1 MUTATED 1 1 1 0 0 0
UAP1L1 WILD-TYPE 12 15 13 11 11 9
'UAP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S8358.  Gene #804: 'UAP1L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
UAP1L1 MUTATED 0 0 0 1 1 0 1 0 0
UAP1L1 WILD-TYPE 11 7 7 8 7 7 10 9 5
'OR6A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S8359.  Gene #805: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR6A2 MUTATED 1 2 5
OR6A2 WILD-TYPE 41 171 142
'OR6A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0082 (Fisher's exact test), Q value = 0.085

Table S8360.  Gene #805: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR6A2 MUTATED 5 1 0
OR6A2 WILD-TYPE 57 72 75

Figure S2367.  Get High-res Image Gene #805: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'OR6A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.16

Table S8361.  Gene #805: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR6A2 MUTATED 1 0 5
OR6A2 WILD-TYPE 69 120 95

Figure S2368.  Get High-res Image Gene #805: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'OR6A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S8362.  Gene #805: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR6A2 MUTATED 1 0 0 0 1 4 0 0 0
OR6A2 WILD-TYPE 40 26 30 29 38 65 20 14 22
'OR6A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S8363.  Gene #805: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR6A2 MUTATED 2 0 4 2
OR6A2 WILD-TYPE 98 72 68 119
'OR6A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S8364.  Gene #805: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR6A2 MUTATED 3 3 0 0 2
OR6A2 WILD-TYPE 56 72 74 119 36

Figure S2369.  Get High-res Image Gene #805: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR6A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.62

Table S8365.  Gene #805: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR6A2 MUTATED 1 2 3 0 1
OR6A2 WILD-TYPE 50 74 58 71 94
'OR6A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S8366.  Gene #805: 'OR6A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR6A2 MUTATED 2 2 0 0 2 0 0 1 0
OR6A2 WILD-TYPE 67 46 39 16 51 20 21 37 50
'PTPN12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.25

Table S8367.  Gene #806: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PTPN12 MUTATED 5 0 1 2 0
PTPN12 WILD-TYPE 27 18 45 25 23
'PTPN12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0607 (Fisher's exact test), Q value = 0.26

Table S8368.  Gene #806: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PTPN12 MUTATED 5 1 2
PTPN12 WILD-TYPE 38 66 34
'PTPN12 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0048

Table S8369.  Gene #806: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTPN12 MUTATED 1 1 15
PTPN12 WILD-TYPE 41 172 132

Figure S2370.  Get High-res Image Gene #806: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPN12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0762 (Fisher's exact test), Q value = 0.3

Table S8370.  Gene #806: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTPN12 MUTATED 4 0 4
PTPN12 WILD-TYPE 58 73 71
'PTPN12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.78

Table S8371.  Gene #806: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTPN12 MUTATED 2 5 7
PTPN12 WILD-TYPE 68 115 93
'PTPN12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S8372.  Gene #806: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTPN12 MUTATED 1 1 2 2 2 5 1 0 0
PTPN12 WILD-TYPE 40 25 28 27 37 64 19 14 22
'PTPN12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S8373.  Gene #806: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTPN12 MUTATED 1 5 3 8
PTPN12 WILD-TYPE 99 67 69 113
'PTPN12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00711 (Fisher's exact test), Q value = 0.079

Table S8374.  Gene #806: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTPN12 MUTATED 1 0 6 5 5
PTPN12 WILD-TYPE 58 75 68 114 33

Figure S2371.  Get High-res Image Gene #806: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPN12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.54

Table S8375.  Gene #806: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTPN12 MUTATED 0 5 2 2 7
PTPN12 WILD-TYPE 51 71 59 69 88
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S8376.  Gene #806: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTPN12 MUTATED 2 1 0 3 2 1 1 4 2
PTPN12 WILD-TYPE 67 47 39 13 51 19 20 34 48
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S8377.  Gene #806: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PTPN12 MUTATED 0 0 1 0 2 0
PTPN12 WILD-TYPE 13 16 13 11 9 9
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S8378.  Gene #806: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PTPN12 MUTATED 0 0 0 1 1 1 0 0 0
PTPN12 WILD-TYPE 11 7 7 8 7 6 11 9 5
'OR2Y1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S8379.  Gene #807: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR2Y1 MUTATED 1 1 5
OR2Y1 WILD-TYPE 41 172 142
'OR2Y1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0513 (Fisher's exact test), Q value = 0.24

Table S8380.  Gene #807: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR2Y1 MUTATED 0 1 5
OR2Y1 WILD-TYPE 62 72 70
'OR2Y1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S8381.  Gene #807: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR2Y1 MUTATED 0 2 5
OR2Y1 WILD-TYPE 70 118 95
'OR2Y1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S8382.  Gene #807: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR2Y1 MUTATED 1 0 0 1 0 5 0 0 0
OR2Y1 WILD-TYPE 40 26 30 28 39 64 20 14 22
'OR2Y1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S8383.  Gene #807: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR2Y1 MUTATED 1 5 0 1
OR2Y1 WILD-TYPE 99 67 72 120

Figure S2372.  Get High-res Image Gene #807: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR2Y1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.097

Table S8384.  Gene #807: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR2Y1 MUTATED 0 1 5 0 1
OR2Y1 WILD-TYPE 59 74 69 119 37

Figure S2373.  Get High-res Image Gene #807: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR2Y1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0037 (Fisher's exact test), Q value = 0.054

Table S8385.  Gene #807: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR2Y1 MUTATED 1 5 0 0 0
OR2Y1 WILD-TYPE 50 71 61 71 95

Figure S2374.  Get High-res Image Gene #807: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR2Y1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00377 (Fisher's exact test), Q value = 0.055

Table S8386.  Gene #807: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR2Y1 MUTATED 2 0 1 3 0 0 0 0 0
OR2Y1 WILD-TYPE 67 48 38 13 53 20 21 38 50

Figure S2375.  Get High-res Image Gene #807: 'OR2Y1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'THOC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S8387.  Gene #808: 'THOC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
THOC6 MUTATED 1 2 5
THOC6 WILD-TYPE 41 171 142
'THOC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S8388.  Gene #808: 'THOC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
THOC6 MUTATED 2 1 3
THOC6 WILD-TYPE 60 72 72
'THOC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S8389.  Gene #808: 'THOC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
THOC6 MUTATED 1 3 3
THOC6 WILD-TYPE 69 117 97
'THOC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S8390.  Gene #808: 'THOC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
THOC6 MUTATED 1 1 1 1 1 0 2 0 0
THOC6 WILD-TYPE 40 25 29 28 38 69 18 14 22
'THOC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S8391.  Gene #808: 'THOC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
THOC6 MUTATED 1 3 2 2
THOC6 WILD-TYPE 99 69 70 119
'THOC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S8392.  Gene #808: 'THOC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
THOC6 MUTATED 1 2 3 1 1
THOC6 WILD-TYPE 58 73 71 118 37
'THOC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S8393.  Gene #808: 'THOC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
THOC6 MUTATED 1 4 0 1 2
THOC6 WILD-TYPE 50 72 61 70 93
'THOC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0977 (Fisher's exact test), Q value = 0.34

Table S8394.  Gene #808: 'THOC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
THOC6 MUTATED 2 1 0 0 1 3 0 1 0
THOC6 WILD-TYPE 67 47 39 16 52 17 21 37 50
'VASH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S8395.  Gene #809: 'VASH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
VASH1 MUTATED 0 0 5
VASH1 WILD-TYPE 42 173 142

Figure S2376.  Get High-res Image Gene #809: 'VASH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VASH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S8396.  Gene #809: 'VASH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
VASH1 MUTATED 0 0 5
VASH1 WILD-TYPE 62 73 70

Figure S2377.  Get High-res Image Gene #809: 'VASH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'VASH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S8397.  Gene #809: 'VASH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
VASH1 MUTATED 0 3 2
VASH1 WILD-TYPE 70 117 98
'VASH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S8398.  Gene #809: 'VASH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
VASH1 MUTATED 0 0 0 3 0 2 0 0 0
VASH1 WILD-TYPE 41 26 30 26 39 67 20 14 22
'VASH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00042 (Fisher's exact test), Q value = 0.014

Table S8399.  Gene #809: 'VASH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
VASH1 MUTATED 0 5 0 0
VASH1 WILD-TYPE 100 67 72 121

Figure S2378.  Get High-res Image Gene #809: 'VASH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'VASH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00119 (Fisher's exact test), Q value = 0.028

Table S8400.  Gene #809: 'VASH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
VASH1 MUTATED 0 0 5 0 0
VASH1 WILD-TYPE 59 75 69 119 38

Figure S2379.  Get High-res Image Gene #809: 'VASH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VASH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00166 (Fisher's exact test), Q value = 0.034

Table S8401.  Gene #809: 'VASH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
VASH1 MUTATED 0 5 0 0 0
VASH1 WILD-TYPE 51 71 61 71 95

Figure S2380.  Get High-res Image Gene #809: 'VASH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'VASH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00272 (Fisher's exact test), Q value = 0.044

Table S8402.  Gene #809: 'VASH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
VASH1 MUTATED 1 1 0 3 0 0 0 0 0
VASH1 WILD-TYPE 68 47 39 13 53 20 21 38 50

Figure S2381.  Get High-res Image Gene #809: 'VASH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP7D3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S8403.  Gene #810: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MAP7D3 MUTATED 2 0 0 1 0
MAP7D3 WILD-TYPE 30 18 46 26 23
'MAP7D3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8404.  Gene #810: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MAP7D3 MUTATED 1 1 1
MAP7D3 WILD-TYPE 42 66 35
'MAP7D3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S8405.  Gene #810: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAP7D3 MUTATED 1 5 11
MAP7D3 WILD-TYPE 41 168 136
'MAP7D3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.56

Table S8406.  Gene #810: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAP7D3 MUTATED 6 2 5
MAP7D3 WILD-TYPE 56 71 70
'MAP7D3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S8407.  Gene #810: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAP7D3 MUTATED 3 4 7
MAP7D3 WILD-TYPE 67 116 93
'MAP7D3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.983 (Fisher's exact test), Q value = 1

Table S8408.  Gene #810: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAP7D3 MUTATED 2 1 1 2 2 5 1 0 0
MAP7D3 WILD-TYPE 39 25 29 27 37 64 19 14 22
'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.62

Table S8409.  Gene #810: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAP7D3 MUTATED 2 5 5 5
MAP7D3 WILD-TYPE 98 67 67 116
'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S8410.  Gene #810: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAP7D3 MUTATED 2 3 7 4 1
MAP7D3 WILD-TYPE 57 72 67 115 37
'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.97

Table S8411.  Gene #810: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAP7D3 MUTATED 1 5 2 5 4
MAP7D3 WILD-TYPE 50 71 59 66 91
'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S8412.  Gene #810: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAP7D3 MUTATED 5 2 0 2 1 1 0 2 4
MAP7D3 WILD-TYPE 64 46 39 14 52 19 21 36 46
'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S8413.  Gene #810: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAP7D3 MUTATED 0 0 2 0 1 0
MAP7D3 WILD-TYPE 13 16 12 11 10 9
'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00267 (Fisher's exact test), Q value = 0.044

Table S8414.  Gene #810: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAP7D3 MUTATED 0 0 0 0 3 0 0 0 0
MAP7D3 WILD-TYPE 11 7 7 9 5 7 11 9 5

Figure S2382.  Get High-res Image Gene #810: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SGK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S8415.  Gene #811: 'SGK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SGK3 MUTATED 1 3 4
SGK3 WILD-TYPE 41 170 143
'SGK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S8416.  Gene #811: 'SGK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SGK3 MUTATED 4 2 2
SGK3 WILD-TYPE 58 71 73
'SGK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S8417.  Gene #811: 'SGK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SGK3 MUTATED 0 5 2
SGK3 WILD-TYPE 70 115 98
'SGK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S8418.  Gene #811: 'SGK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SGK3 MUTATED 1 3 0 1 0 2 0 0 0
SGK3 WILD-TYPE 40 23 30 28 39 67 20 14 22
'SGK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S8419.  Gene #811: 'SGK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SGK3 MUTATED 2 1 4 1
SGK3 WILD-TYPE 98 71 68 120
'SGK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S8420.  Gene #811: 'SGK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SGK3 MUTATED 2 3 2 1 0
SGK3 WILD-TYPE 57 72 72 118 38
'SGK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.22

Table S8421.  Gene #811: 'SGK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SGK3 MUTATED 3 0 3 0 2
SGK3 WILD-TYPE 48 76 58 71 93

Figure S2383.  Get High-res Image Gene #811: 'SGK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SGK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.92

Table S8422.  Gene #811: 'SGK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SGK3 MUTATED 2 3 1 0 0 0 0 0 2
SGK3 WILD-TYPE 67 45 38 16 53 20 21 38 48
'ARHGAP32 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.17

Table S8423.  Gene #812: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ARHGAP32 MUTATED 4 0 0 2 0
ARHGAP32 WILD-TYPE 28 18 46 25 23

Figure S2384.  Get High-res Image Gene #812: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARHGAP32 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S8424.  Gene #812: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ARHGAP32 MUTATED 5 1 0
ARHGAP32 WILD-TYPE 38 66 36

Figure S2385.  Get High-res Image Gene #812: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARHGAP32 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0444 (Fisher's exact test), Q value = 0.22

Table S8425.  Gene #812: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARHGAP32 MUTATED 2 6 15
ARHGAP32 WILD-TYPE 40 167 132

Figure S2386.  Get High-res Image Gene #812: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARHGAP32 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S8426.  Gene #812: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARHGAP32 MUTATED 2 6 10
ARHGAP32 WILD-TYPE 60 67 65
'ARHGAP32 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.96

Table S8427.  Gene #812: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARHGAP32 MUTATED 6 8 10
ARHGAP32 WILD-TYPE 64 112 90
'ARHGAP32 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S8428.  Gene #812: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARHGAP32 MUTATED 0 1 2 3 5 8 2 1 2
ARHGAP32 WILD-TYPE 41 25 28 26 34 61 18 13 20
'ARHGAP32 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S8429.  Gene #812: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARHGAP32 MUTATED 4 9 3 8
ARHGAP32 WILD-TYPE 96 63 69 113
'ARHGAP32 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00157 (Fisher's exact test), Q value = 0.033

Table S8430.  Gene #812: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARHGAP32 MUTATED 1 6 9 2 6
ARHGAP32 WILD-TYPE 58 69 65 117 32

Figure S2387.  Get High-res Image Gene #812: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGAP32 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0978 (Fisher's exact test), Q value = 0.34

Table S8431.  Gene #812: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARHGAP32 MUTATED 4 9 1 2 6
ARHGAP32 WILD-TYPE 47 67 60 69 89
'ARHGAP32 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0462 (Fisher's exact test), Q value = 0.23

Table S8432.  Gene #812: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARHGAP32 MUTATED 8 2 0 2 1 2 0 5 2
ARHGAP32 WILD-TYPE 61 46 39 14 52 18 21 33 48

Figure S2388.  Get High-res Image Gene #812: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BRD8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S8433.  Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BRD8 MUTATED 2 0 0 2 0
BRD8 WILD-TYPE 30 18 46 25 23
'BRD8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.095

Table S8434.  Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BRD8 MUTATED 4 0 0
BRD8 WILD-TYPE 39 67 36

Figure S2389.  Get High-res Image Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BRD8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00052 (Fisher's exact test), Q value = 0.016

Table S8435.  Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BRD8 MUTATED 1 1 13
BRD8 WILD-TYPE 41 172 134

Figure S2390.  Get High-res Image Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BRD8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00208 (Fisher's exact test), Q value = 0.039

Table S8436.  Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BRD8 MUTATED 2 0 9
BRD8 WILD-TYPE 60 73 66

Figure S2391.  Get High-res Image Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BRD8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S8437.  Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BRD8 MUTATED 2 4 6
BRD8 WILD-TYPE 68 116 94
'BRD8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S8438.  Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BRD8 MUTATED 2 0 0 2 2 5 0 0 1
BRD8 WILD-TYPE 39 26 30 27 37 64 20 14 21
'BRD8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00272 (Fisher's exact test), Q value = 0.044

Table S8439.  Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BRD8 MUTATED 0 8 3 4
BRD8 WILD-TYPE 100 64 69 117

Figure S2392.  Get High-res Image Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BRD8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S8440.  Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BRD8 MUTATED 1 1 9 0 4
BRD8 WILD-TYPE 58 74 65 119 34

Figure S2393.  Get High-res Image Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BRD8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00357 (Fisher's exact test), Q value = 0.053

Table S8441.  Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BRD8 MUTATED 1 9 1 0 3
BRD8 WILD-TYPE 50 67 60 71 92

Figure S2394.  Get High-res Image Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BRD8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.11

Table S8442.  Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BRD8 MUTATED 3 2 0 4 0 1 1 2 1
BRD8 WILD-TYPE 66 46 39 12 53 19 20 36 49

Figure S2395.  Get High-res Image Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BRD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S8443.  Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BRD8 MUTATED 0 1 1 0 2 1
BRD8 WILD-TYPE 13 15 13 11 9 8
'BRD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S8444.  Gene #813: 'BRD8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BRD8 MUTATED 1 0 0 2 0 1 1 0 0
BRD8 WILD-TYPE 10 7 7 7 8 6 10 9 5
'SLC41A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S8445.  Gene #814: 'SLC41A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC41A2 MUTATED 0 3 5
SLC41A2 WILD-TYPE 42 170 142
'SLC41A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.58

Table S8446.  Gene #814: 'SLC41A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC41A2 MUTATED 4 2 1
SLC41A2 WILD-TYPE 58 71 74
'SLC41A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S8447.  Gene #814: 'SLC41A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC41A2 MUTATED 0 2 5
SLC41A2 WILD-TYPE 70 118 95
'SLC41A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S8448.  Gene #814: 'SLC41A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC41A2 MUTATED 1 0 0 1 0 3 0 0 2
SLC41A2 WILD-TYPE 40 26 30 28 39 66 20 14 20
'SLC41A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S8449.  Gene #814: 'SLC41A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC41A2 MUTATED 3 1 3 1
SLC41A2 WILD-TYPE 97 71 69 120
'SLC41A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S8450.  Gene #814: 'SLC41A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC41A2 MUTATED 4 1 2 1 0
SLC41A2 WILD-TYPE 55 74 72 118 38
'SLC41A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S8451.  Gene #814: 'SLC41A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC41A2 MUTATED 1 3 3 1 0
SLC41A2 WILD-TYPE 50 73 58 70 95
'SLC41A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S8452.  Gene #814: 'SLC41A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC41A2 MUTATED 0 3 2 1 2 0 0 0 0
SLC41A2 WILD-TYPE 69 45 37 15 51 20 21 38 50
'EAPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S8453.  Gene #815: 'EAPP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EAPP MUTATED 0 3 1
EAPP WILD-TYPE 42 170 146
'EAPP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S8454.  Gene #815: 'EAPP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EAPP MUTATED 0 1 2
EAPP WILD-TYPE 62 72 73
'EAPP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S8455.  Gene #815: 'EAPP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EAPP MUTATED 0 2 1
EAPP WILD-TYPE 70 118 99
'EAPP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S8456.  Gene #815: 'EAPP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EAPP MUTATED 0 1 1 0 0 1 0 0 0
EAPP WILD-TYPE 41 25 29 29 39 68 20 14 22
'EAPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S8457.  Gene #815: 'EAPP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EAPP MUTATED 2 2 0 0
EAPP WILD-TYPE 98 70 72 121
'EAPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S8458.  Gene #815: 'EAPP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EAPP MUTATED 0 3 0 1 0
EAPP WILD-TYPE 59 72 74 118 38
'EAPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S8459.  Gene #815: 'EAPP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EAPP MUTATED 0 3 0 0 1
EAPP WILD-TYPE 51 73 61 71 94
'EAPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S8460.  Gene #815: 'EAPP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EAPP MUTATED 2 0 0 0 0 1 0 1 0
EAPP WILD-TYPE 67 48 39 16 53 19 21 37 50
'DNAJC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00721 (Fisher's exact test), Q value = 0.08

Table S8461.  Gene #816: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DNAJC7 MUTATED 0 0 7
DNAJC7 WILD-TYPE 42 173 140

Figure S2396.  Get High-res Image Gene #816: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNAJC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S8462.  Gene #816: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DNAJC7 MUTATED 2 0 3
DNAJC7 WILD-TYPE 60 73 72
'DNAJC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S8463.  Gene #816: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DNAJC7 MUTATED 0 3 3
DNAJC7 WILD-TYPE 70 117 97
'DNAJC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S8464.  Gene #816: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DNAJC7 MUTATED 1 0 1 1 0 2 1 0 0
DNAJC7 WILD-TYPE 40 26 29 28 39 67 19 14 22
'DNAJC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S8465.  Gene #816: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DNAJC7 MUTATED 0 3 2 2
DNAJC7 WILD-TYPE 100 69 70 119
'DNAJC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S8466.  Gene #816: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DNAJC7 MUTATED 1 0 4 1 1
DNAJC7 WILD-TYPE 58 75 70 118 37
'DNAJC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S8467.  Gene #816: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DNAJC7 MUTATED 0 4 1 0 2
DNAJC7 WILD-TYPE 51 72 60 71 93
'DNAJC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S8468.  Gene #816: 'DNAJC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DNAJC7 MUTATED 1 1 0 2 1 1 0 1 0
DNAJC7 WILD-TYPE 68 47 39 14 52 19 21 37 50
'LBP MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8469.  Gene #817: 'LBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LBP MUTATED 0 4 3
LBP WILD-TYPE 42 169 144
'LBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S8470.  Gene #817: 'LBP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LBP MUTATED 1 3 2
LBP WILD-TYPE 61 70 73
'LBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.32

Table S8471.  Gene #817: 'LBP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LBP MUTATED 2 0 3
LBP WILD-TYPE 68 120 97
'LBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S8472.  Gene #817: 'LBP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LBP MUTATED 2 0 0 0 0 3 0 0 0
LBP WILD-TYPE 39 26 30 29 39 66 20 14 22
'LBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S8473.  Gene #817: 'LBP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LBP MUTATED 3 2 2 0
LBP WILD-TYPE 97 70 70 121
'LBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S8474.  Gene #817: 'LBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LBP MUTATED 0 3 3 1 0
LBP WILD-TYPE 59 72 71 118 38
'LBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S8475.  Gene #817: 'LBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LBP MUTATED 1 4 1 1 0
LBP WILD-TYPE 50 72 60 70 95
'LBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S8476.  Gene #817: 'LBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LBP MUTATED 2 1 0 1 2 1 0 0 0
LBP WILD-TYPE 67 47 39 15 51 19 21 38 50
'ZNF180 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0936 (Fisher's exact test), Q value = 0.33

Table S8477.  Gene #818: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF180 MUTATED 3 1 0 2 0
ZNF180 WILD-TYPE 29 17 46 25 23
'ZNF180 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.16

Table S8478.  Gene #818: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF180 MUTATED 4 0 2
ZNF180 WILD-TYPE 39 67 34

Figure S2397.  Get High-res Image Gene #818: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZNF180 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.16

Table S8479.  Gene #818: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF180 MUTATED 2 2 10
ZNF180 WILD-TYPE 40 171 137

Figure S2398.  Get High-res Image Gene #818: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF180 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.94

Table S8480.  Gene #818: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF180 MUTATED 4 2 3
ZNF180 WILD-TYPE 58 71 72
'ZNF180 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8481.  Gene #818: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF180 MUTATED 2 5 4
ZNF180 WILD-TYPE 68 115 96
'ZNF180 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S8482.  Gene #818: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF180 MUTATED 3 1 0 0 4 2 1 0 0
ZNF180 WILD-TYPE 38 25 30 29 35 67 19 14 22
'ZNF180 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S8483.  Gene #818: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF180 MUTATED 2 3 2 7
ZNF180 WILD-TYPE 98 69 70 114
'ZNF180 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.63

Table S8484.  Gene #818: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF180 MUTATED 2 2 3 3 4
ZNF180 WILD-TYPE 57 73 71 116 34
'ZNF180 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 0.99

Table S8485.  Gene #818: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF180 MUTATED 1 4 3 1 4
ZNF180 WILD-TYPE 50 72 58 70 91
'ZNF180 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S8486.  Gene #818: 'ZNF180 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF180 MUTATED 3 1 0 0 3 1 1 3 1
ZNF180 WILD-TYPE 66 47 39 16 50 19 20 35 49
'PCDH19 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S8487.  Gene #819: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PCDH19 MUTATED 4 0 1 1 0
PCDH19 WILD-TYPE 28 18 45 26 23
'PCDH19 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S8488.  Gene #819: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PCDH19 MUTATED 4 1 1
PCDH19 WILD-TYPE 39 66 35
'PCDH19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00845 (Fisher's exact test), Q value = 0.086

Table S8489.  Gene #819: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PCDH19 MUTATED 1 2 11
PCDH19 WILD-TYPE 41 171 136

Figure S2399.  Get High-res Image Gene #819: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PCDH19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 0.28

Table S8490.  Gene #819: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PCDH19 MUTATED 3 0 5
PCDH19 WILD-TYPE 59 73 70
'PCDH19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00301 (Fisher's exact test), Q value = 0.048

Table S8491.  Gene #819: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PCDH19 MUTATED 5 0 7
PCDH19 WILD-TYPE 65 120 93

Figure S2400.  Get High-res Image Gene #819: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PCDH19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.82

Table S8492.  Gene #819: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PCDH19 MUTATED 1 2 0 0 3 5 1 0 0
PCDH19 WILD-TYPE 40 24 30 29 36 64 19 14 22
'PCDH19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0985 (Fisher's exact test), Q value = 0.34

Table S8493.  Gene #819: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PCDH19 MUTATED 1 6 2 5
PCDH19 WILD-TYPE 99 66 70 116
'PCDH19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.55

Table S8494.  Gene #819: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PCDH19 MUTATED 2 1 5 3 3
PCDH19 WILD-TYPE 57 74 69 116 35
'PCDH19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.62

Table S8495.  Gene #819: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PCDH19 MUTATED 0 4 1 2 6
PCDH19 WILD-TYPE 51 72 60 69 89
'PCDH19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S8496.  Gene #819: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PCDH19 MUTATED 2 1 0 3 2 0 1 3 1
PCDH19 WILD-TYPE 67 47 39 13 51 20 20 35 49
'PCDH19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S8497.  Gene #819: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PCDH19 MUTATED 0 1 1 0 1 0
PCDH19 WILD-TYPE 13 15 13 11 10 9
'PCDH19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S8498.  Gene #819: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PCDH19 MUTATED 1 0 0 0 2 0 0 0 0
PCDH19 WILD-TYPE 10 7 7 9 6 7 11 9 5
'MACF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S8499.  Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MACF1 MUTATED 14 0 0 4 1
MACF1 WILD-TYPE 18 18 46 23 22

Figure S2401.  Get High-res Image Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MACF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S8500.  Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MACF1 MUTATED 15 2 2
MACF1 WILD-TYPE 28 65 34

Figure S2402.  Get High-res Image Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MACF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S8501.  Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MACF1 MUTATED 4 10 43
MACF1 WILD-TYPE 38 163 104

Figure S2403.  Get High-res Image Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MACF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00459 (Fisher's exact test), Q value = 0.062

Table S8502.  Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MACF1 MUTATED 14 5 19
MACF1 WILD-TYPE 48 68 56

Figure S2404.  Get High-res Image Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MACF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00363 (Fisher's exact test), Q value = 0.054

Table S8503.  Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MACF1 MUTATED 6 16 27
MACF1 WILD-TYPE 64 104 73

Figure S2405.  Get High-res Image Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MACF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S8504.  Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MACF1 MUTATED 4 4 5 5 5 20 5 0 1
MACF1 WILD-TYPE 37 22 25 24 34 49 15 14 21
'MACF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00136 (Fisher's exact test), Q value = 0.03

Table S8505.  Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MACF1 MUTATED 5 17 15 21
MACF1 WILD-TYPE 95 55 57 100

Figure S2406.  Get High-res Image Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MACF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S8506.  Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MACF1 MUTATED 7 6 24 6 15
MACF1 WILD-TYPE 52 69 50 113 23

Figure S2407.  Get High-res Image Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S8507.  Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MACF1 MUTATED 3 24 8 2 17
MACF1 WILD-TYPE 48 52 53 69 78

Figure S2408.  Get High-res Image Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S8508.  Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MACF1 MUTATED 8 15 1 6 7 2 1 11 3
MACF1 WILD-TYPE 61 33 38 10 46 18 20 27 47

Figure S2409.  Get High-res Image Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S8509.  Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MACF1 MUTATED 0 2 2 1 4 0
MACF1 WILD-TYPE 13 14 12 10 7 9
'MACF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.9

Table S8510.  Gene #820: 'MACF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MACF1 MUTATED 2 0 0 2 1 1 3 0 0
MACF1 WILD-TYPE 9 7 7 7 7 6 8 9 5
'MYH15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 0.17

Table S8511.  Gene #821: 'MYH15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MYH15 MUTATED 4 0 0 2 0
MYH15 WILD-TYPE 28 18 46 25 23

Figure S2410.  Get High-res Image Gene #821: 'MYH15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MYH15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S8512.  Gene #821: 'MYH15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MYH15 MUTATED 4 1 1
MYH15 WILD-TYPE 39 66 35
'MYH15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00307 (Fisher's exact test), Q value = 0.048

Table S8513.  Gene #821: 'MYH15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MYH15 MUTATED 0 7 18
MYH15 WILD-TYPE 42 166 129

Figure S2411.  Get High-res Image Gene #821: 'MYH15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MYH15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 0.26

Table S8514.  Gene #821: 'MYH15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MYH15 MUTATED 10 3 6
MYH15 WILD-TYPE 52 70 69
'MYH15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S8515.  Gene #821: 'MYH15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MYH15 MUTATED 0 10 10
MYH15 WILD-TYPE 70 110 90

Figure S2412.  Get High-res Image Gene #821: 'MYH15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MYH15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S8516.  Gene #821: 'MYH15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MYH15 MUTATED 3 2 1 3 3 6 0 0 2
MYH15 WILD-TYPE 38 24 29 26 36 63 20 14 20
'MYH15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S8517.  Gene #821: 'MYH15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MYH15 MUTATED 5 4 9 7
MYH15 WILD-TYPE 95 68 63 114
'MYH15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S8518.  Gene #821: 'MYH15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MYH15 MUTATED 5 6 7 3 4
MYH15 WILD-TYPE 54 69 67 116 34
'MYH15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S8519.  Gene #821: 'MYH15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MYH15 MUTATED 4 5 6 3 7
MYH15 WILD-TYPE 47 71 55 68 88
'MYH15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S8520.  Gene #821: 'MYH15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MYH15 MUTATED 5 6 1 2 4 1 0 4 2
MYH15 WILD-TYPE 64 42 38 14 49 19 21 34 48
'MYH15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S8521.  Gene #821: 'MYH15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MYH15 MUTATED 0 2 4 0 1 1
MYH15 WILD-TYPE 13 14 10 11 10 8
'MYH15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S8522.  Gene #821: 'MYH15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MYH15 MUTATED 0 1 0 1 2 2 1 1 0
MYH15 WILD-TYPE 11 6 7 8 6 5 10 8 5
'PLK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S8523.  Gene #822: 'PLK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PLK2 MUTATED 0 0 6
PLK2 WILD-TYPE 42 173 141

Figure S2413.  Get High-res Image Gene #822: 'PLK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PLK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8524.  Gene #822: 'PLK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PLK2 MUTATED 1 1 2
PLK2 WILD-TYPE 61 72 73
'PLK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S8525.  Gene #822: 'PLK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PLK2 MUTATED 0 1 3
PLK2 WILD-TYPE 70 119 97
'PLK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S8526.  Gene #822: 'PLK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PLK2 MUTATED 0 0 0 1 0 3 0 0 0
PLK2 WILD-TYPE 41 26 30 28 39 66 20 14 22
'PLK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S8527.  Gene #822: 'PLK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PLK2 MUTATED 1 2 1 2
PLK2 WILD-TYPE 99 70 71 119
'PLK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S8528.  Gene #822: 'PLK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PLK2 MUTATED 0 2 2 1 1
PLK2 WILD-TYPE 59 73 72 118 37
'PLK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S8529.  Gene #822: 'PLK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PLK2 MUTATED 0 3 0 2 1
PLK2 WILD-TYPE 51 73 61 69 94
'PLK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S8530.  Gene #822: 'PLK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PLK2 MUTATED 2 0 0 2 1 0 0 1 0
PLK2 WILD-TYPE 67 48 39 14 52 20 21 37 50
'ZNF619 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S8531.  Gene #823: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF619 MUTATED 2 0 0 2 0
ZNF619 WILD-TYPE 30 18 46 25 23
'ZNF619 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S8532.  Gene #823: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF619 MUTATED 3 1 0
ZNF619 WILD-TYPE 40 66 36
'ZNF619 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0079

Table S8533.  Gene #823: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF619 MUTATED 0 0 11
ZNF619 WILD-TYPE 42 173 136

Figure S2414.  Get High-res Image Gene #823: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF619 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 0.31

Table S8534.  Gene #823: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF619 MUTATED 4 0 2
ZNF619 WILD-TYPE 58 73 73
'ZNF619 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S8535.  Gene #823: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF619 MUTATED 0 4 5
ZNF619 WILD-TYPE 70 116 95
'ZNF619 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S8536.  Gene #823: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF619 MUTATED 0 1 2 1 1 4 0 0 0
ZNF619 WILD-TYPE 41 25 28 28 38 65 20 14 22
'ZNF619 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0926 (Fisher's exact test), Q value = 0.33

Table S8537.  Gene #823: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF619 MUTATED 0 3 2 6
ZNF619 WILD-TYPE 100 69 70 115
'ZNF619 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.15

Table S8538.  Gene #823: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF619 MUTATED 0 1 4 2 4
ZNF619 WILD-TYPE 59 74 70 117 34

Figure S2415.  Get High-res Image Gene #823: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF619 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0802 (Fisher's exact test), Q value = 0.31

Table S8539.  Gene #823: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF619 MUTATED 0 3 1 0 6
ZNF619 WILD-TYPE 51 73 60 71 89
'ZNF619 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S8540.  Gene #823: 'ZNF619 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF619 MUTATED 1 1 0 2 1 1 1 1 2
ZNF619 WILD-TYPE 68 47 39 14 52 19 20 37 48
'WNK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.076 (Fisher's exact test), Q value = 0.3

Table S8541.  Gene #824: 'WNK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
WNK1 MUTATED 3 0 0 2 0
WNK1 WILD-TYPE 29 18 46 25 23
'WNK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0675 (Fisher's exact test), Q value = 0.28

Table S8542.  Gene #824: 'WNK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
WNK1 MUTATED 4 1 0
WNK1 WILD-TYPE 39 66 36
'WNK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.097

Table S8543.  Gene #824: 'WNK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WNK1 MUTATED 2 3 13
WNK1 WILD-TYPE 40 170 134

Figure S2416.  Get High-res Image Gene #824: 'WNK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WNK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S8544.  Gene #824: 'WNK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WNK1 MUTATED 2 4 7
WNK1 WILD-TYPE 60 69 68
'WNK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.55

Table S8545.  Gene #824: 'WNK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WNK1 MUTATED 1 7 7
WNK1 WILD-TYPE 69 113 93
'WNK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S8546.  Gene #824: 'WNK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WNK1 MUTATED 0 1 4 2 2 5 1 0 0
WNK1 WILD-TYPE 41 25 26 27 37 64 19 14 22
'WNK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S8547.  Gene #824: 'WNK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WNK1 MUTATED 3 8 2 6
WNK1 WILD-TYPE 97 64 70 115
'WNK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00374 (Fisher's exact test), Q value = 0.055

Table S8548.  Gene #824: 'WNK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WNK1 MUTATED 1 6 6 1 5
WNK1 WILD-TYPE 58 69 68 118 33

Figure S2417.  Get High-res Image Gene #824: 'WNK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WNK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S8549.  Gene #824: 'WNK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WNK1 MUTATED 1 7 2 2 6
WNK1 WILD-TYPE 50 69 59 69 89
'WNK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.79

Table S8550.  Gene #824: 'WNK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WNK1 MUTATED 6 3 1 1 1 2 0 3 1
WNK1 WILD-TYPE 63 45 38 15 52 18 21 35 49
'TRIM54 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.65

Table S8551.  Gene #825: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRIM54 MUTATED 2 5 2
TRIM54 WILD-TYPE 40 168 145
'TRIM54 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8552.  Gene #825: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRIM54 MUTATED 2 2 3
TRIM54 WILD-TYPE 60 71 72
'TRIM54 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S8553.  Gene #825: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRIM54 MUTATED 0 6 2
TRIM54 WILD-TYPE 70 114 98
'TRIM54 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.21

Table S8554.  Gene #825: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRIM54 MUTATED 0 0 1 3 0 2 0 2 0
TRIM54 WILD-TYPE 41 26 29 26 39 67 20 12 22

Figure S2418.  Get High-res Image Gene #825: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'TRIM54 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0833 (Fisher's exact test), Q value = 0.31

Table S8555.  Gene #825: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRIM54 MUTATED 6 1 0 2
TRIM54 WILD-TYPE 94 71 72 119
'TRIM54 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S8556.  Gene #825: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRIM54 MUTATED 2 4 1 1 1
TRIM54 WILD-TYPE 57 71 73 118 37
'TRIM54 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S8557.  Gene #825: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRIM54 MUTATED 1 2 3 2 0
TRIM54 WILD-TYPE 50 74 58 69 95
'TRIM54 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S8558.  Gene #825: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRIM54 MUTATED 2 0 3 1 2 0 0 0 0
TRIM54 WILD-TYPE 67 48 36 15 51 20 21 38 50
'TRIM54 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S8559.  Gene #825: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TRIM54 MUTATED 1 0 0 1 1 0
TRIM54 WILD-TYPE 12 16 14 10 10 9
'TRIM54 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S8560.  Gene #825: 'TRIM54 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TRIM54 MUTATED 0 0 0 1 0 0 1 1 0
TRIM54 WILD-TYPE 11 7 7 8 8 7 10 8 5
'GTF3C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S8561.  Gene #826: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GTF3C3 MUTATED 1 5 9
GTF3C3 WILD-TYPE 41 168 138
'GTF3C3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S8562.  Gene #826: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GTF3C3 MUTATED 7 3 3
GTF3C3 WILD-TYPE 55 70 72
'GTF3C3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0521 (Fisher's exact test), Q value = 0.24

Table S8563.  Gene #826: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GTF3C3 MUTATED 0 5 7
GTF3C3 WILD-TYPE 70 115 93
'GTF3C3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.99

Table S8564.  Gene #826: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GTF3C3 MUTATED 2 0 1 2 0 5 1 0 1
GTF3C3 WILD-TYPE 39 26 29 27 39 64 19 14 21
'GTF3C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0483 (Fisher's exact test), Q value = 0.24

Table S8565.  Gene #826: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GTF3C3 MUTATED 2 5 6 2
GTF3C3 WILD-TYPE 98 67 66 119

Figure S2419.  Get High-res Image Gene #826: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GTF3C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0464 (Fisher's exact test), Q value = 0.23

Table S8566.  Gene #826: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GTF3C3 MUTATED 3 3 7 1 1
GTF3C3 WILD-TYPE 56 72 67 118 37

Figure S2420.  Get High-res Image Gene #826: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S8567.  Gene #826: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GTF3C3 MUTATED 1 5 4 2 3
GTF3C3 WILD-TYPE 50 71 57 69 92
'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S8568.  Gene #826: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GTF3C3 MUTATED 3 2 1 2 3 2 0 1 1
GTF3C3 WILD-TYPE 66 46 38 14 50 18 21 37 49
'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0726 (Fisher's exact test), Q value = 0.29

Table S8569.  Gene #826: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GTF3C3 MUTATED 0 1 4 0 1 0
GTF3C3 WILD-TYPE 13 15 10 11 10 9
'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S8570.  Gene #826: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GTF3C3 MUTATED 0 1 0 1 1 1 1 0 1
GTF3C3 WILD-TYPE 11 6 7 8 7 6 10 9 4
'OR51A4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S8571.  Gene #827: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OR51A4 MUTATED 2 0 0 1 0
OR51A4 WILD-TYPE 30 18 46 26 23
'OR51A4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S8572.  Gene #827: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OR51A4 MUTATED 2 0 1
OR51A4 WILD-TYPE 41 67 35
'OR51A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S8573.  Gene #827: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR51A4 MUTATED 0 2 6
OR51A4 WILD-TYPE 42 171 141
'OR51A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0821 (Fisher's exact test), Q value = 0.31

Table S8574.  Gene #827: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR51A4 MUTATED 1 0 4
OR51A4 WILD-TYPE 61 73 71
'OR51A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S8575.  Gene #827: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR51A4 MUTATED 0 4 2
OR51A4 WILD-TYPE 70 116 98
'OR51A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S8576.  Gene #827: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR51A4 MUTATED 0 1 1 1 1 2 0 0 0
OR51A4 WILD-TYPE 41 25 29 28 38 67 20 14 22
'OR51A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S8577.  Gene #827: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR51A4 MUTATED 0 3 2 3
OR51A4 WILD-TYPE 100 69 70 118
'OR51A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S8578.  Gene #827: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR51A4 MUTATED 1 1 3 1 2
OR51A4 WILD-TYPE 58 74 71 118 36
'OR51A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S8579.  Gene #827: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR51A4 MUTATED 1 4 0 2 1
OR51A4 WILD-TYPE 50 72 61 69 94
'OR51A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S8580.  Gene #827: 'OR51A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR51A4 MUTATED 2 1 0 2 1 0 0 2 0
OR51A4 WILD-TYPE 67 47 39 14 52 20 21 36 50
'SLC25A17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S8581.  Gene #828: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC25A17 MUTATED 2 0 0 1 0
SLC25A17 WILD-TYPE 30 18 46 26 23
'SLC25A17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0382 (Fisher's exact test), Q value = 0.21

Table S8582.  Gene #828: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC25A17 MUTATED 3 0 0
SLC25A17 WILD-TYPE 40 67 36

Figure S2421.  Get High-res Image Gene #828: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SLC25A17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00756 (Fisher's exact test), Q value = 0.081

Table S8583.  Gene #828: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC25A17 MUTATED 0 0 7
SLC25A17 WILD-TYPE 42 173 140

Figure S2422.  Get High-res Image Gene #828: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC25A17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S8584.  Gene #828: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC25A17 MUTATED 2 0 2
SLC25A17 WILD-TYPE 60 73 73
'SLC25A17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S8585.  Gene #828: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC25A17 MUTATED 1 3 3
SLC25A17 WILD-TYPE 69 117 97
'SLC25A17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S8586.  Gene #828: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC25A17 MUTATED 1 1 0 1 1 3 0 0 0
SLC25A17 WILD-TYPE 40 25 30 28 38 66 20 14 22
'SLC25A17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S8587.  Gene #828: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC25A17 MUTATED 0 1 2 4
SLC25A17 WILD-TYPE 100 71 70 117
'SLC25A17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S8588.  Gene #828: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC25A17 MUTATED 0 0 3 1 3
SLC25A17 WILD-TYPE 59 75 71 118 35

Figure S2423.  Get High-res Image Gene #828: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC25A17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.46

Table S8589.  Gene #828: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC25A17 MUTATED 0 3 0 0 3
SLC25A17 WILD-TYPE 51 73 61 71 92
'SLC25A17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 0.93

Table S8590.  Gene #828: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC25A17 MUTATED 1 2 0 0 0 0 0 2 1
SLC25A17 WILD-TYPE 68 46 39 16 53 20 21 36 49
'GNA14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00137 (Fisher's exact test), Q value = 0.03

Table S8591.  Gene #829: 'GNA14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GNA14 MUTATED 5 0 0 0 0
GNA14 WILD-TYPE 27 18 46 27 23

Figure S2424.  Get High-res Image Gene #829: 'GNA14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GNA14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00305 (Fisher's exact test), Q value = 0.048

Table S8592.  Gene #829: 'GNA14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GNA14 MUTATED 5 0 0
GNA14 WILD-TYPE 38 67 36

Figure S2425.  Get High-res Image Gene #829: 'GNA14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GNA14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00851 (Fisher's exact test), Q value = 0.087

Table S8593.  Gene #829: 'GNA14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GNA14 MUTATED 0 1 9
GNA14 WILD-TYPE 42 172 138

Figure S2426.  Get High-res Image Gene #829: 'GNA14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GNA14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0812 (Fisher's exact test), Q value = 0.31

Table S8594.  Gene #829: 'GNA14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GNA14 MUTATED 1 0 4
GNA14 WILD-TYPE 61 73 71
'GNA14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S8595.  Gene #829: 'GNA14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GNA14 MUTATED 1 3 1
GNA14 WILD-TYPE 69 117 99
'GNA14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.47

Table S8596.  Gene #829: 'GNA14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GNA14 MUTATED 0 2 0 0 0 1 1 0 1
GNA14 WILD-TYPE 41 24 30 29 39 68 19 14 21
'GNA14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S8597.  Gene #829: 'GNA14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GNA14 MUTATED 1 2 1 6
GNA14 WILD-TYPE 99 70 71 115
'GNA14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00337 (Fisher's exact test), Q value = 0.051

Table S8598.  Gene #829: 'GNA14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GNA14 MUTATED 0 2 2 1 5
GNA14 WILD-TYPE 59 73 72 118 33

Figure S2427.  Get High-res Image Gene #829: 'GNA14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GNA14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S8599.  Gene #829: 'GNA14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GNA14 MUTATED 2 2 0 1 5
GNA14 WILD-TYPE 49 74 61 70 90
'GNA14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0552 (Fisher's exact test), Q value = 0.25

Table S8600.  Gene #829: 'GNA14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GNA14 MUTATED 0 0 1 1 2 0 1 4 1
GNA14 WILD-TYPE 69 48 38 15 51 20 20 34 49
'PREX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.098 (Fisher's exact test), Q value = 0.34

Table S8601.  Gene #830: 'PREX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PREX2 MUTATED 4 0 1 3 0
PREX2 WILD-TYPE 28 18 45 24 23
'PREX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S8602.  Gene #830: 'PREX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PREX2 MUTATED 5 2 1
PREX2 WILD-TYPE 38 65 35
'PREX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.46

Table S8603.  Gene #830: 'PREX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PREX2 MUTATED 2 11 17
PREX2 WILD-TYPE 40 162 130
'PREX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.63

Table S8604.  Gene #830: 'PREX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PREX2 MUTATED 5 5 11
PREX2 WILD-TYPE 57 68 64
'PREX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S8605.  Gene #830: 'PREX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PREX2 MUTATED 4 8 12
PREX2 WILD-TYPE 66 112 88
'PREX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S8606.  Gene #830: 'PREX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PREX2 MUTATED 2 1 1 3 2 9 3 3 0
PREX2 WILD-TYPE 39 25 29 26 37 60 17 11 22
'PREX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S8607.  Gene #830: 'PREX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PREX2 MUTATED 10 6 5 9
PREX2 WILD-TYPE 90 66 67 112
'PREX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.56

Table S8608.  Gene #830: 'PREX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PREX2 MUTATED 6 8 6 5 5
PREX2 WILD-TYPE 53 67 68 114 33
'PREX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S8609.  Gene #830: 'PREX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PREX2 MUTATED 5 9 5 3 8
PREX2 WILD-TYPE 46 67 56 68 87
'PREX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.78

Table S8610.  Gene #830: 'PREX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PREX2 MUTATED 4 3 4 4 4 1 2 5 3
PREX2 WILD-TYPE 65 45 35 12 49 19 19 33 47
'PREX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S8611.  Gene #830: 'PREX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PREX2 MUTATED 0 0 0 2 3 1
PREX2 WILD-TYPE 13 16 14 9 8 8

Figure S2428.  Get High-res Image Gene #830: 'PREX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PREX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S8612.  Gene #830: 'PREX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PREX2 MUTATED 0 0 1 1 1 2 0 1 0
PREX2 WILD-TYPE 11 7 6 8 7 5 11 8 5
'MAOA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S8613.  Gene #831: 'MAOA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAOA MUTATED 0 2 3
MAOA WILD-TYPE 42 171 144
'MAOA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.74

Table S8614.  Gene #831: 'MAOA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAOA MUTATED 1 2 0
MAOA WILD-TYPE 61 71 75
'MAOA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S8615.  Gene #831: 'MAOA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAOA MUTATED 0 1 4
MAOA WILD-TYPE 70 119 96
'MAOA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 0.99

Table S8616.  Gene #831: 'MAOA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAOA MUTATED 1 0 0 0 0 3 1 0 0
MAOA WILD-TYPE 40 26 30 29 39 66 19 14 22
'MAOA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S8617.  Gene #831: 'MAOA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAOA MUTATED 1 1 2 1
MAOA WILD-TYPE 99 71 70 120
'MAOA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S8618.  Gene #831: 'MAOA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAOA MUTATED 1 1 1 0 2
MAOA WILD-TYPE 58 74 73 119 36
'MAOA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S8619.  Gene #831: 'MAOA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAOA MUTATED 1 1 1 0 1
MAOA WILD-TYPE 50 75 60 71 94
'MAOA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.96

Table S8620.  Gene #831: 'MAOA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAOA MUTATED 1 2 0 0 0 0 0 1 0
MAOA WILD-TYPE 68 46 39 16 53 20 21 37 50
'CD55 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0543 (Fisher's exact test), Q value = 0.25

Table S8621.  Gene #832: 'CD55 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CD55 MUTATED 3 0 0 0 0
CD55 WILD-TYPE 29 18 46 27 23
'CD55 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0373 (Fisher's exact test), Q value = 0.21

Table S8622.  Gene #832: 'CD55 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CD55 MUTATED 3 0 0
CD55 WILD-TYPE 40 67 36

Figure S2429.  Get High-res Image Gene #832: 'CD55 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CD55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00735 (Fisher's exact test), Q value = 0.08

Table S8623.  Gene #832: 'CD55 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CD55 MUTATED 0 0 7
CD55 WILD-TYPE 42 173 140

Figure S2430.  Get High-res Image Gene #832: 'CD55 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CD55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S8624.  Gene #832: 'CD55 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CD55 MUTATED 2 0 2
CD55 WILD-TYPE 60 73 73
'CD55 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8625.  Gene #832: 'CD55 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CD55 MUTATED 1 2 2
CD55 WILD-TYPE 69 118 98
'CD55 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.79

Table S8626.  Gene #832: 'CD55 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CD55 MUTATED 0 0 0 0 2 2 0 1 0
CD55 WILD-TYPE 41 26 30 29 37 67 20 13 22
'CD55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S8627.  Gene #832: 'CD55 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CD55 MUTATED 0 3 1 3
CD55 WILD-TYPE 100 69 71 118
'CD55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S8628.  Gene #832: 'CD55 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CD55 MUTATED 0 0 4 1 2
CD55 WILD-TYPE 59 75 70 118 36

Figure S2431.  Get High-res Image Gene #832: 'CD55 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CD55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S8629.  Gene #832: 'CD55 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CD55 MUTATED 1 3 0 0 3
CD55 WILD-TYPE 50 73 61 71 92
'CD55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.031 (Fisher's exact test), Q value = 0.19

Table S8630.  Gene #832: 'CD55 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CD55 MUTATED 2 1 0 0 0 2 2 0 0
CD55 WILD-TYPE 67 47 39 16 53 18 19 38 50

Figure S2432.  Get High-res Image Gene #832: 'CD55 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MATN3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.34

Table S8631.  Gene #833: 'MATN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MATN3 MUTATED 3 0 0 1 0
MATN3 WILD-TYPE 29 18 46 26 23
'MATN3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.094

Table S8632.  Gene #833: 'MATN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MATN3 MUTATED 4 0 0
MATN3 WILD-TYPE 39 67 36

Figure S2433.  Get High-res Image Gene #833: 'MATN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MATN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.1

Table S8633.  Gene #833: 'MATN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MATN3 MUTATED 0 0 6
MATN3 WILD-TYPE 42 173 141

Figure S2434.  Get High-res Image Gene #833: 'MATN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MATN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S8634.  Gene #833: 'MATN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MATN3 MUTATED 0 2 4
MATN3 WILD-TYPE 70 118 96
'MATN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.97

Table S8635.  Gene #833: 'MATN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MATN3 MUTATED 0 0 0 1 1 4 0 0 0
MATN3 WILD-TYPE 41 26 30 28 38 65 20 14 22
'MATN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S8636.  Gene #833: 'MATN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MATN3 MUTATED 0 1 1 4
MATN3 WILD-TYPE 100 71 71 117
'MATN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0193 (Fisher's exact test), Q value = 0.14

Table S8637.  Gene #833: 'MATN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MATN3 MUTATED 0 0 2 1 3
MATN3 WILD-TYPE 59 75 72 118 35

Figure S2435.  Get High-res Image Gene #833: 'MATN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MATN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S8638.  Gene #833: 'MATN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MATN3 MUTATED 0 2 0 0 3
MATN3 WILD-TYPE 51 74 61 71 92
'MATN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S8639.  Gene #833: 'MATN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MATN3 MUTATED 2 0 0 0 0 0 1 2 0
MATN3 WILD-TYPE 67 48 39 16 53 20 20 36 50
'OR6C75 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S8640.  Gene #834: 'OR6C75 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR6C75 MUTATED 0 2 5
OR6C75 WILD-TYPE 42 171 142
'OR6C75 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S8641.  Gene #834: 'OR6C75 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR6C75 MUTATED 3 2 0
OR6C75 WILD-TYPE 59 71 75
'OR6C75 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0529 (Fisher's exact test), Q value = 0.25

Table S8642.  Gene #834: 'OR6C75 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR6C75 MUTATED 0 1 5
OR6C75 WILD-TYPE 70 119 95
'OR6C75 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 0.98

Table S8643.  Gene #834: 'OR6C75 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR6C75 MUTATED 0 0 0 1 2 2 1 0 0
OR6C75 WILD-TYPE 41 26 30 28 37 67 19 14 22
'OR6C75 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S8644.  Gene #834: 'OR6C75 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR6C75 MUTATED 1 2 2 2
OR6C75 WILD-TYPE 99 70 70 119
'OR6C75 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.077 (Fisher's exact test), Q value = 0.3

Table S8645.  Gene #834: 'OR6C75 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR6C75 MUTATED 2 1 2 0 2
OR6C75 WILD-TYPE 57 74 72 119 36
'OR6C75 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.99

Table S8646.  Gene #834: 'OR6C75 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR6C75 MUTATED 1 2 1 0 3
OR6C75 WILD-TYPE 50 74 60 71 92
'OR6C75 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.99

Table S8647.  Gene #834: 'OR6C75 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR6C75 MUTATED 2 2 0 0 0 0 0 2 1
OR6C75 WILD-TYPE 67 46 39 16 53 20 21 36 49
'NAP1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.72

Table S8648.  Gene #835: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NAP1L1 MUTATED 0 2 5
NAP1L1 WILD-TYPE 42 171 142
'NAP1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8649.  Gene #835: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NAP1L1 MUTATED 2 2 2
NAP1L1 WILD-TYPE 60 71 73
'NAP1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S8650.  Gene #835: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NAP1L1 MUTATED 0 1 3
NAP1L1 WILD-TYPE 70 119 97
'NAP1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S8651.  Gene #835: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NAP1L1 MUTATED 1 0 0 1 0 2 0 0 0
NAP1L1 WILD-TYPE 40 26 30 28 39 67 20 14 22
'NAP1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.94

Table S8652.  Gene #835: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NAP1L1 MUTATED 3 2 1 1
NAP1L1 WILD-TYPE 97 70 71 120
'NAP1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0631 (Fisher's exact test), Q value = 0.27

Table S8653.  Gene #835: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NAP1L1 MUTATED 1 4 1 0 1
NAP1L1 WILD-TYPE 58 71 73 119 37
'NAP1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.91

Table S8654.  Gene #835: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NAP1L1 MUTATED 2 2 1 0 2
NAP1L1 WILD-TYPE 49 74 60 71 93
'NAP1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S8655.  Gene #835: 'NAP1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NAP1L1 MUTATED 2 1 0 1 1 0 0 1 1
NAP1L1 WILD-TYPE 67 47 39 15 52 20 21 37 49
'SLC22A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00605 (Fisher's exact test), Q value = 0.073

Table S8656.  Gene #836: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC22A3 MUTATED 1 1 10
SLC22A3 WILD-TYPE 41 172 137

Figure S2436.  Get High-res Image Gene #836: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC22A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S8657.  Gene #836: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC22A3 MUTATED 5 1 4
SLC22A3 WILD-TYPE 57 72 71
'SLC22A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8658.  Gene #836: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC22A3 MUTATED 2 4 4
SLC22A3 WILD-TYPE 68 116 96
'SLC22A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S8659.  Gene #836: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC22A3 MUTATED 0 3 1 0 0 4 1 1 0
SLC22A3 WILD-TYPE 41 23 29 29 39 65 19 13 22
'SLC22A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S8660.  Gene #836: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC22A3 MUTATED 2 3 4 3
SLC22A3 WILD-TYPE 98 69 68 118
'SLC22A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S8661.  Gene #836: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC22A3 MUTATED 1 3 5 2 1
SLC22A3 WILD-TYPE 58 72 69 117 37
'SLC22A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S8662.  Gene #836: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC22A3 MUTATED 0 6 1 2 3
SLC22A3 WILD-TYPE 51 70 60 69 92
'SLC22A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.59

Table S8663.  Gene #836: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC22A3 MUTATED 4 2 0 2 1 1 1 0 1
SLC22A3 WILD-TYPE 65 46 39 14 52 19 20 38 49
'SLC22A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00659 (Fisher's exact test), Q value = 0.076

Table S8664.  Gene #836: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLC22A3 MUTATED 0 0 0 0 3 0
SLC22A3 WILD-TYPE 13 16 14 11 8 9

Figure S2437.  Get High-res Image Gene #836: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SLC22A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S8665.  Gene #836: 'SLC22A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLC22A3 MUTATED 0 0 0 1 1 1 0 0 0
SLC22A3 WILD-TYPE 11 7 7 8 7 6 11 9 5
'HRSP12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S8666.  Gene #837: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HRSP12 MUTATED 1 1 4
HRSP12 WILD-TYPE 41 172 143
'HRSP12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S8667.  Gene #837: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HRSP12 MUTATED 2 0 2
HRSP12 WILD-TYPE 60 73 73
'HRSP12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S8668.  Gene #837: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HRSP12 MUTATED 0 3 2
HRSP12 WILD-TYPE 70 117 98
'HRSP12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S8669.  Gene #837: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HRSP12 MUTATED 0 1 1 1 1 1 0 0 0
HRSP12 WILD-TYPE 41 25 29 28 38 68 20 14 22
'HRSP12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S8670.  Gene #837: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HRSP12 MUTATED 1 2 0 3
HRSP12 WILD-TYPE 99 70 72 118
'HRSP12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S8671.  Gene #837: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HRSP12 MUTATED 0 2 1 2 1
HRSP12 WILD-TYPE 59 73 73 117 37
'HRSP12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.53

Table S8672.  Gene #837: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HRSP12 MUTATED 1 1 0 0 4
HRSP12 WILD-TYPE 50 75 61 71 91
'HRSP12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S8673.  Gene #837: 'HRSP12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HRSP12 MUTATED 0 0 0 1 1 1 0 1 2
HRSP12 WILD-TYPE 69 48 39 15 52 19 21 37 48
'RYR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S8674.  Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RYR2 MUTATED 10 3 3 5 1
RYR2 WILD-TYPE 22 15 43 22 22

Figure S2438.  Get High-res Image Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RYR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0266 (Fisher's exact test), Q value = 0.17

Table S8675.  Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RYR2 MUTATED 12 7 3
RYR2 WILD-TYPE 31 60 33

Figure S2439.  Get High-res Image Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RYR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00042 (Fisher's exact test), Q value = 0.014

Table S8676.  Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RYR2 MUTATED 8 26 49
RYR2 WILD-TYPE 34 147 98

Figure S2440.  Get High-res Image Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RYR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 0.34

Table S8677.  Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RYR2 MUTATED 14 17 28
RYR2 WILD-TYPE 48 56 47
'RYR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00112 (Fisher's exact test), Q value = 0.027

Table S8678.  Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RYR2 MUTATED 8 25 35
RYR2 WILD-TYPE 62 95 65

Figure S2441.  Get High-res Image Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RYR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S8679.  Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RYR2 MUTATED 6 4 6 6 9 23 7 5 2
RYR2 WILD-TYPE 35 22 24 23 30 46 13 9 20
'RYR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.048 (Fisher's exact test), Q value = 0.23

Table S8680.  Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RYR2 MUTATED 18 25 18 23
RYR2 WILD-TYPE 82 47 54 98

Figure S2442.  Get High-res Image Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RYR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-04 (Fisher's exact test), Q value = 0.023

Table S8681.  Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RYR2 MUTATED 11 21 26 14 12
RYR2 WILD-TYPE 48 54 48 105 26

Figure S2443.  Get High-res Image Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RYR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S8682.  Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RYR2 MUTATED 10 23 11 13 25
RYR2 WILD-TYPE 41 53 50 58 70
'RYR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.031 (Fisher's exact test), Q value = 0.19

Table S8683.  Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RYR2 MUTATED 16 13 5 8 10 6 3 14 7
RYR2 WILD-TYPE 53 35 34 8 43 14 18 24 43

Figure S2444.  Get High-res Image Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RYR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S8684.  Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RYR2 MUTATED 5 5 3 4 5 4
RYR2 WILD-TYPE 8 11 11 7 6 5
'RYR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S8685.  Gene #838: 'RYR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RYR2 MUTATED 4 1 1 4 2 2 5 5 2
RYR2 WILD-TYPE 7 6 6 5 6 5 6 4 3
'ZNF605 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 0.32

Table S8686.  Gene #839: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF605 MUTATED 1 1 6
ZNF605 WILD-TYPE 41 172 141
'ZNF605 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.62

Table S8687.  Gene #839: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF605 MUTATED 4 1 2
ZNF605 WILD-TYPE 58 72 73
'ZNF605 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S8688.  Gene #839: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF605 MUTATED 1 2 4
ZNF605 WILD-TYPE 69 118 96
'ZNF605 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S8689.  Gene #839: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF605 MUTATED 0 0 1 0 1 4 0 1 0
ZNF605 WILD-TYPE 41 26 29 29 38 65 20 13 22
'ZNF605 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0451 (Fisher's exact test), Q value = 0.23

Table S8690.  Gene #839: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF605 MUTATED 1 5 1 1
ZNF605 WILD-TYPE 99 67 71 120

Figure S2445.  Get High-res Image Gene #839: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF605 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S8691.  Gene #839: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF605 MUTATED 0 2 5 0 1
ZNF605 WILD-TYPE 59 73 69 119 37

Figure S2446.  Get High-res Image Gene #839: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF605 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S8692.  Gene #839: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF605 MUTATED 0 3 1 2 2
ZNF605 WILD-TYPE 51 73 60 69 93
'ZNF605 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 0.85

Table S8693.  Gene #839: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF605 MUTATED 3 1 0 1 0 1 0 1 1
ZNF605 WILD-TYPE 66 47 39 15 53 19 21 37 49
'ZNF605 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S8694.  Gene #839: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF605 MUTATED 0 0 2 0 1 0
ZNF605 WILD-TYPE 13 16 12 11 10 9
'ZNF605 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S8695.  Gene #839: 'ZNF605 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF605 MUTATED 0 0 0 0 1 0 1 0 1
ZNF605 WILD-TYPE 11 7 7 9 7 7 10 9 4
'C1ORF168 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S8696.  Gene #840: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C1ORF168 MUTATED 2 0 0 2 0
C1ORF168 WILD-TYPE 30 18 46 25 23
'C1ORF168 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S8697.  Gene #840: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C1ORF168 MUTATED 3 1 0
C1ORF168 WILD-TYPE 40 66 36
'C1ORF168 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00323 (Fisher's exact test), Q value = 0.05

Table S8698.  Gene #840: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C1ORF168 MUTATED 0 2 12
C1ORF168 WILD-TYPE 42 171 135

Figure S2447.  Get High-res Image Gene #840: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C1ORF168 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.88

Table S8699.  Gene #840: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C1ORF168 MUTATED 3 2 5
C1ORF168 WILD-TYPE 59 71 70
'C1ORF168 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.63

Table S8700.  Gene #840: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C1ORF168 MUTATED 1 5 6
C1ORF168 WILD-TYPE 69 115 94
'C1ORF168 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S8701.  Gene #840: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C1ORF168 MUTATED 1 1 1 0 1 3 2 2 1
C1ORF168 WILD-TYPE 40 25 29 29 38 66 18 12 21
'C1ORF168 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.74

Table S8702.  Gene #840: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C1ORF168 MUTATED 2 3 5 4
C1ORF168 WILD-TYPE 98 69 67 117
'C1ORF168 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S8703.  Gene #840: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C1ORF168 MUTATED 2 2 5 2 3
C1ORF168 WILD-TYPE 57 73 69 117 35
'C1ORF168 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S8704.  Gene #840: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C1ORF168 MUTATED 3 5 1 0 4
C1ORF168 WILD-TYPE 48 71 60 71 91
'C1ORF168 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00456 (Fisher's exact test), Q value = 0.062

Table S8705.  Gene #840: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C1ORF168 MUTATED 1 3 0 1 1 4 0 3 0
C1ORF168 WILD-TYPE 68 45 39 15 52 16 21 35 50

Figure S2448.  Get High-res Image Gene #840: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C1ORF168 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.15

Table S8706.  Gene #840: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C1ORF168 MUTATED 1 0 0 0 3 0
C1ORF168 WILD-TYPE 12 16 14 11 8 9

Figure S2449.  Get High-res Image Gene #840: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'C1ORF168 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.92

Table S8707.  Gene #840: 'C1ORF168 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C1ORF168 MUTATED 0 0 0 1 1 0 2 0 0
C1ORF168 WILD-TYPE 11 7 7 8 7 7 9 9 5
'PGAP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S8708.  Gene #841: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PGAP3 MUTATED 2 0 1 0 0
PGAP3 WILD-TYPE 30 18 45 27 23
'PGAP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S8709.  Gene #841: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PGAP3 MUTATED 2 1 0
PGAP3 WILD-TYPE 41 66 36
'PGAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S8710.  Gene #841: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PGAP3 MUTATED 1 2 4
PGAP3 WILD-TYPE 41 171 143
'PGAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8711.  Gene #841: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PGAP3 MUTATED 1 1 2
PGAP3 WILD-TYPE 61 72 73
'PGAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8712.  Gene #841: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PGAP3 MUTATED 1 3 2
PGAP3 WILD-TYPE 69 117 98
'PGAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S8713.  Gene #841: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PGAP3 MUTATED 1 0 0 1 2 1 1 0 0
PGAP3 WILD-TYPE 40 26 30 28 37 68 19 14 22
'PGAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S8714.  Gene #841: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PGAP3 MUTATED 1 2 2 2
PGAP3 WILD-TYPE 99 70 70 119
'PGAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S8715.  Gene #841: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PGAP3 MUTATED 1 0 3 1 2
PGAP3 WILD-TYPE 58 75 71 118 36
'PGAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S8716.  Gene #841: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PGAP3 MUTATED 0 2 2 1 2
PGAP3 WILD-TYPE 51 74 59 70 93
'PGAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0815 (Fisher's exact test), Q value = 0.31

Table S8717.  Gene #841: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PGAP3 MUTATED 0 3 0 1 0 0 0 2 1
PGAP3 WILD-TYPE 69 45 39 15 53 20 21 36 49
'PGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0952 (Fisher's exact test), Q value = 0.34

Table S8718.  Gene #841: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PGAP3 MUTATED 0 0 0 1 2 0
PGAP3 WILD-TYPE 13 16 14 10 9 9
'PGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S8719.  Gene #841: 'PGAP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PGAP3 MUTATED 0 0 1 1 0 0 1 0 0
PGAP3 WILD-TYPE 11 7 6 8 8 7 10 9 5
'AGTR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S8720.  Gene #842: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AGTR2 MUTATED 2 0 2 1 0
AGTR2 WILD-TYPE 30 18 44 26 23
'AGTR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S8721.  Gene #842: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AGTR2 MUTATED 3 2 0
AGTR2 WILD-TYPE 40 65 36
'AGTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S8722.  Gene #842: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AGTR2 MUTATED 1 5 9
AGTR2 WILD-TYPE 41 168 138
'AGTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 0.34

Table S8723.  Gene #842: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AGTR2 MUTATED 3 1 7
AGTR2 WILD-TYPE 59 72 68
'AGTR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S8724.  Gene #842: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AGTR2 MUTATED 2 5 5
AGTR2 WILD-TYPE 68 115 95
'AGTR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.96

Table S8725.  Gene #842: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AGTR2 MUTATED 1 3 1 1 1 4 0 1 0
AGTR2 WILD-TYPE 40 23 29 28 38 65 20 13 22
'AGTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.86

Table S8726.  Gene #842: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AGTR2 MUTATED 2 4 4 5
AGTR2 WILD-TYPE 98 68 68 116
'AGTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S8727.  Gene #842: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AGTR2 MUTATED 2 2 6 2 3
AGTR2 WILD-TYPE 57 73 68 117 35
'AGTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.78

Table S8728.  Gene #842: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AGTR2 MUTATED 2 5 3 1 2
AGTR2 WILD-TYPE 49 71 58 70 93
'AGTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S8729.  Gene #842: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AGTR2 MUTATED 1 4 1 2 3 0 0 2 0
AGTR2 WILD-TYPE 68 44 38 14 50 20 21 36 50
'AGTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 0.24

Table S8730.  Gene #842: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AGTR2 MUTATED 0 0 0 0 2 1
AGTR2 WILD-TYPE 13 16 14 11 9 8

Figure S2450.  Get High-res Image Gene #842: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'AGTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S8731.  Gene #842: 'AGTR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AGTR2 MUTATED 0 0 0 1 0 1 1 0 0
AGTR2 WILD-TYPE 11 7 7 8 8 6 10 9 5
'RAE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S8732.  Gene #843: 'RAE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RAE1 MUTATED 1 1 4
RAE1 WILD-TYPE 41 172 143
'RAE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S8733.  Gene #843: 'RAE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RAE1 MUTATED 0 1 4
RAE1 WILD-TYPE 62 72 71
'RAE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S8734.  Gene #843: 'RAE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RAE1 MUTATED 0 4 2
RAE1 WILD-TYPE 70 116 98
'RAE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.9

Table S8735.  Gene #843: 'RAE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RAE1 MUTATED 0 0 0 2 1 2 0 0 1
RAE1 WILD-TYPE 41 26 30 27 38 67 20 14 21
'RAE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S8736.  Gene #843: 'RAE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RAE1 MUTATED 1 3 0 2
RAE1 WILD-TYPE 99 69 72 119
'RAE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S8737.  Gene #843: 'RAE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RAE1 MUTATED 0 2 2 1 1
RAE1 WILD-TYPE 59 73 72 118 37
'RAE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.63

Table S8738.  Gene #843: 'RAE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RAE1 MUTATED 0 3 1 0 1
RAE1 WILD-TYPE 51 73 60 71 94
'RAE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0874 (Fisher's exact test), Q value = 0.32

Table S8739.  Gene #843: 'RAE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RAE1 MUTATED 1 0 0 2 1 0 0 1 0
RAE1 WILD-TYPE 68 48 39 14 52 20 21 37 50
'PAGE2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S8740.  Gene #844: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PAGE2 MUTATED 1 0 0 1 1
PAGE2 WILD-TYPE 31 18 46 26 22
'PAGE2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8741.  Gene #844: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PAGE2 MUTATED 1 1 1
PAGE2 WILD-TYPE 42 66 35
'PAGE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.72

Table S8742.  Gene #844: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PAGE2 MUTATED 0 2 5
PAGE2 WILD-TYPE 42 171 142
'PAGE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S8743.  Gene #844: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PAGE2 MUTATED 2 1 2
PAGE2 WILD-TYPE 60 72 73
'PAGE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S8744.  Gene #844: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PAGE2 MUTATED 1 2 3
PAGE2 WILD-TYPE 69 118 97
'PAGE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.65

Table S8745.  Gene #844: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PAGE2 MUTATED 1 1 0 1 0 1 2 0 0
PAGE2 WILD-TYPE 40 25 30 28 39 68 18 14 22
'PAGE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S8746.  Gene #844: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PAGE2 MUTATED 1 2 3 2
PAGE2 WILD-TYPE 99 70 69 119
'PAGE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S8747.  Gene #844: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PAGE2 MUTATED 1 1 3 3 0
PAGE2 WILD-TYPE 58 74 71 116 38
'PAGE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.72

Table S8748.  Gene #844: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PAGE2 MUTATED 0 1 1 4 2
PAGE2 WILD-TYPE 51 75 60 67 93
'PAGE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S8749.  Gene #844: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PAGE2 MUTATED 1 2 1 0 2 1 1 0 0
PAGE2 WILD-TYPE 68 46 38 16 51 19 20 38 50
'PAGE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.64

Table S8750.  Gene #844: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PAGE2 MUTATED 1 0 2 0 0 0
PAGE2 WILD-TYPE 12 16 12 11 11 9
'PAGE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S8751.  Gene #844: 'PAGE2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PAGE2 MUTATED 0 0 0 0 2 0 0 1 0
PAGE2 WILD-TYPE 11 7 7 9 6 7 11 8 5
'HNMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S8752.  Gene #845: 'HNMT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HNMT MUTATED 0 4 4
HNMT WILD-TYPE 42 169 143
'HNMT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S8753.  Gene #845: 'HNMT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HNMT MUTATED 3 0 3
HNMT WILD-TYPE 59 73 72
'HNMT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S8754.  Gene #845: 'HNMT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HNMT MUTATED 1 2 3
HNMT WILD-TYPE 69 118 97
'HNMT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S8755.  Gene #845: 'HNMT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HNMT MUTATED 0 0 2 0 0 2 1 0 1
HNMT WILD-TYPE 41 26 28 29 39 67 19 14 21
'HNMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S8756.  Gene #845: 'HNMT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HNMT MUTATED 1 2 3 2
HNMT WILD-TYPE 99 70 69 119
'HNMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S8757.  Gene #845: 'HNMT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HNMT MUTATED 1 2 3 2 0
HNMT WILD-TYPE 58 73 71 117 38
'HNMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S8758.  Gene #845: 'HNMT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HNMT MUTATED 1 4 1 1 1
HNMT WILD-TYPE 50 72 60 70 94
'HNMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.12

Table S8759.  Gene #845: 'HNMT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HNMT MUTATED 0 1 0 2 3 1 1 0 0
HNMT WILD-TYPE 69 47 39 14 50 19 20 38 50

Figure S2451.  Get High-res Image Gene #845: 'HNMT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.96

Table S8760.  Gene #845: 'HNMT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HNMT MUTATED 0 0 1 1 1 0
HNMT WILD-TYPE 13 16 13 10 10 9
'HNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S8761.  Gene #845: 'HNMT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HNMT MUTATED 0 0 0 1 1 0 1 0 0
HNMT WILD-TYPE 11 7 7 8 7 7 10 9 5
'AHCTF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.27

Table S8762.  Gene #846: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AHCTF1 MUTATED 4 0 0 2 1
AHCTF1 WILD-TYPE 28 18 46 25 22
'AHCTF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S8763.  Gene #846: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AHCTF1 MUTATED 4 2 1
AHCTF1 WILD-TYPE 39 65 35
'AHCTF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.25

Table S8764.  Gene #846: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AHCTF1 MUTATED 3 5 13
AHCTF1 WILD-TYPE 39 168 134
'AHCTF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S8765.  Gene #846: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AHCTF1 MUTATED 5 2 7
AHCTF1 WILD-TYPE 57 71 68
'AHCTF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S8766.  Gene #846: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AHCTF1 MUTATED 1 8 8
AHCTF1 WILD-TYPE 69 112 92
'AHCTF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S8767.  Gene #846: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AHCTF1 MUTATED 3 0 2 2 1 4 2 1 2
AHCTF1 WILD-TYPE 38 26 28 27 38 65 18 13 20
'AHCTF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.6

Table S8768.  Gene #846: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AHCTF1 MUTATED 3 7 5 6
AHCTF1 WILD-TYPE 97 65 67 115
'AHCTF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0821 (Fisher's exact test), Q value = 0.31

Table S8769.  Gene #846: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AHCTF1 MUTATED 2 4 8 3 4
AHCTF1 WILD-TYPE 57 71 66 116 34
'AHCTF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S8770.  Gene #846: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AHCTF1 MUTATED 3 7 2 2 6
AHCTF1 WILD-TYPE 48 69 59 69 89
'AHCTF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.46

Table S8771.  Gene #846: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AHCTF1 MUTATED 4 1 2 3 2 3 1 3 1
AHCTF1 WILD-TYPE 65 47 37 13 51 17 20 35 49
'AHCTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S8772.  Gene #846: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AHCTF1 MUTATED 0 1 2 0 3 1
AHCTF1 WILD-TYPE 13 15 12 11 8 8
'AHCTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S8773.  Gene #846: 'AHCTF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AHCTF1 MUTATED 1 0 0 2 2 0 1 1 0
AHCTF1 WILD-TYPE 10 7 7 7 6 7 10 8 5
'PRPH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.054 (Fisher's exact test), Q value = 0.25

Table S8774.  Gene #847: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PRPH2 MUTATED 3 0 0 0 0
PRPH2 WILD-TYPE 29 18 46 27 23
'PRPH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.21

Table S8775.  Gene #847: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PRPH2 MUTATED 3 0 0
PRPH2 WILD-TYPE 40 67 36

Figure S2452.  Get High-res Image Gene #847: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PRPH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8776.  Gene #847: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRPH2 MUTATED 1 5 4
PRPH2 WILD-TYPE 41 168 143
'PRPH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S8777.  Gene #847: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRPH2 MUTATED 1 5 0
PRPH2 WILD-TYPE 61 68 75

Figure S2453.  Get High-res Image Gene #847: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PRPH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S8778.  Gene #847: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRPH2 MUTATED 0 3 5
PRPH2 WILD-TYPE 70 117 95
'PRPH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.989 (Fisher's exact test), Q value = 1

Table S8779.  Gene #847: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRPH2 MUTATED 1 1 1 0 1 3 0 0 1
PRPH2 WILD-TYPE 40 25 29 29 38 66 20 14 21
'PRPH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.75

Table S8780.  Gene #847: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRPH2 MUTATED 4 0 2 4
PRPH2 WILD-TYPE 96 72 70 117
'PRPH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0767 (Fisher's exact test), Q value = 0.3

Table S8781.  Gene #847: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRPH2 MUTATED 1 4 1 1 3
PRPH2 WILD-TYPE 58 71 73 118 35
'PRPH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S8782.  Gene #847: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRPH2 MUTATED 1 3 1 1 4
PRPH2 WILD-TYPE 50 73 60 70 91
'PRPH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S8783.  Gene #847: 'PRPH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRPH2 MUTATED 1 2 0 0 1 2 0 3 1
PRPH2 WILD-TYPE 68 46 39 16 52 18 21 35 49
'NOD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00802 (Fisher's exact test), Q value = 0.084

Table S8784.  Gene #848: 'NOD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NOD2 MUTATED 3 2 11
NOD2 WILD-TYPE 39 171 136

Figure S2454.  Get High-res Image Gene #848: 'NOD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NOD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S8785.  Gene #848: 'NOD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NOD2 MUTATED 4 3 7
NOD2 WILD-TYPE 58 70 68
'NOD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S8786.  Gene #848: 'NOD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NOD2 MUTATED 1 4 8
NOD2 WILD-TYPE 69 116 92
'NOD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S8787.  Gene #848: 'NOD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NOD2 MUTATED 0 0 1 3 0 6 1 0 2
NOD2 WILD-TYPE 41 26 29 26 39 63 19 14 20
'NOD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00259 (Fisher's exact test), Q value = 0.043

Table S8788.  Gene #848: 'NOD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NOD2 MUTATED 1 8 5 2
NOD2 WILD-TYPE 99 64 67 119

Figure S2455.  Get High-res Image Gene #848: 'NOD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NOD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S8789.  Gene #848: 'NOD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NOD2 MUTATED 3 1 10 0 2
NOD2 WILD-TYPE 56 74 64 119 36

Figure S2456.  Get High-res Image Gene #848: 'NOD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NOD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.13

Table S8790.  Gene #848: 'NOD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NOD2 MUTATED 1 8 4 0 3
NOD2 WILD-TYPE 50 68 57 71 92

Figure S2457.  Get High-res Image Gene #848: 'NOD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NOD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.4

Table S8791.  Gene #848: 'NOD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NOD2 MUTATED 6 3 1 2 1 0 0 3 0
NOD2 WILD-TYPE 63 45 38 14 52 20 21 35 50
'PTCH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00895 (Fisher's exact test), Q value = 0.089

Table S8792.  Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PTCH2 MUTATED 4 0 0 0 0
PTCH2 WILD-TYPE 28 18 46 27 23

Figure S2458.  Get High-res Image Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTCH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.095

Table S8793.  Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PTCH2 MUTATED 4 0 0
PTCH2 WILD-TYPE 39 67 36

Figure S2459.  Get High-res Image Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PTCH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S8794.  Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTCH2 MUTATED 3 3 11
PTCH2 WILD-TYPE 39 170 136

Figure S2460.  Get High-res Image Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTCH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S8795.  Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTCH2 MUTATED 7 2 4
PTCH2 WILD-TYPE 55 71 71
'PTCH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.55

Table S8796.  Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTCH2 MUTATED 1 7 7
PTCH2 WILD-TYPE 69 113 93
'PTCH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.63

Table S8797.  Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTCH2 MUTATED 0 2 1 3 3 6 0 0 0
PTCH2 WILD-TYPE 41 24 29 26 36 63 20 14 22
'PTCH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.91

Table S8798.  Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTCH2 MUTATED 3 5 4 5
PTCH2 WILD-TYPE 97 67 68 116
'PTCH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0038 (Fisher's exact test), Q value = 0.055

Table S8799.  Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTCH2 MUTATED 1 3 8 1 4
PTCH2 WILD-TYPE 58 72 66 118 34

Figure S2461.  Get High-res Image Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTCH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.63

Table S8800.  Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTCH2 MUTATED 2 7 2 3 2
PTCH2 WILD-TYPE 49 69 59 68 93
'PTCH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S8801.  Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTCH2 MUTATED 2 4 1 3 2 1 0 2 1
PTCH2 WILD-TYPE 67 44 38 13 51 19 21 36 49
'PTCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00936 (Fisher's exact test), Q value = 0.091

Table S8802.  Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PTCH2 MUTATED 0 0 0 0 3 1
PTCH2 WILD-TYPE 13 16 14 11 8 8

Figure S2462.  Get High-res Image Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PTCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 0.89

Table S8803.  Gene #849: 'PTCH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PTCH2 MUTATED 0 0 0 2 0 0 1 1 0
PTCH2 WILD-TYPE 11 7 7 7 8 7 10 8 5
'GPR126 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S8804.  Gene #850: 'GPR126 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GPR126 MUTATED 4 0 0 2 0
GPR126 WILD-TYPE 28 18 46 25 23

Figure S2463.  Get High-res Image Gene #850: 'GPR126 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GPR126 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S8805.  Gene #850: 'GPR126 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GPR126 MUTATED 4 1 1
GPR126 WILD-TYPE 39 66 35
'GPR126 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.011

Table S8806.  Gene #850: 'GPR126 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GPR126 MUTATED 1 1 14
GPR126 WILD-TYPE 41 172 133

Figure S2464.  Get High-res Image Gene #850: 'GPR126 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPR126 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.11

Table S8807.  Gene #850: 'GPR126 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GPR126 MUTATED 6 0 3
GPR126 WILD-TYPE 56 73 72

Figure S2465.  Get High-res Image Gene #850: 'GPR126 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GPR126 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S8808.  Gene #850: 'GPR126 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GPR126 MUTATED 3 5 6
GPR126 WILD-TYPE 67 115 94
'GPR126 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.66

Table S8809.  Gene #850: 'GPR126 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GPR126 MUTATED 1 0 2 1 4 4 0 2 0
GPR126 WILD-TYPE 40 26 28 28 35 65 20 12 22
'GPR126 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S8810.  Gene #850: 'GPR126 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GPR126 MUTATED 1 7 1 7
GPR126 WILD-TYPE 99 65 71 114

Figure S2466.  Get High-res Image Gene #850: 'GPR126 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GPR126 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0885 (Fisher's exact test), Q value = 0.32

Table S8811.  Gene #850: 'GPR126 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GPR126 MUTATED 1 2 6 3 4
GPR126 WILD-TYPE 58 73 68 116 34
'GPR126 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.65

Table S8812.  Gene #850: 'GPR126 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GPR126 MUTATED 2 3 2 1 8
GPR126 WILD-TYPE 49 73 59 70 87
'GPR126 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.54

Table S8813.  Gene #850: 'GPR126 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GPR126 MUTATED 4 1 1 0 1 2 1 5 1
GPR126 WILD-TYPE 65 47 38 16 52 18 20 33 49
'DDX17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S8814.  Gene #851: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DDX17 MUTATED 1 0 0 2 0
DDX17 WILD-TYPE 31 18 46 25 23
'DDX17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0391 (Fisher's exact test), Q value = 0.21

Table S8815.  Gene #851: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DDX17 MUTATED 3 0 0
DDX17 WILD-TYPE 40 67 36

Figure S2467.  Get High-res Image Gene #851: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00631 (Fisher's exact test), Q value = 0.074

Table S8816.  Gene #851: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DDX17 MUTATED 1 0 7
DDX17 WILD-TYPE 41 173 140

Figure S2468.  Get High-res Image Gene #851: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DDX17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S8817.  Gene #851: 'DDX17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DDX17 MUTATED 2 0 3
DDX17 WILD-TYPE 60 73 72
'DDX17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S8818.  Gene #851: 'DDX17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DDX17 MUTATED 1 4 3
DDX17 WILD-TYPE 69 116 97
'DDX17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 0.8

Table S8819.  Gene #851: 'DDX17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DDX17 MUTATED 0 2 0 2 1 3 0 0 0
DDX17 WILD-TYPE 41 24 30 27 38 66 20 14 22
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S8820.  Gene #851: 'DDX17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DDX17 MUTATED 0 3 2 3
DDX17 WILD-TYPE 100 69 70 118
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00726 (Fisher's exact test), Q value = 0.08

Table S8821.  Gene #851: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DDX17 MUTATED 0 0 4 1 3
DDX17 WILD-TYPE 59 75 70 118 35

Figure S2469.  Get High-res Image Gene #851: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0779 (Fisher's exact test), Q value = 0.3

Table S8822.  Gene #851: 'DDX17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DDX17 MUTATED 0 4 0 0 3
DDX17 WILD-TYPE 51 72 61 71 92
'DDX17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S8823.  Gene #851: 'DDX17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DDX17 MUTATED 1 1 0 2 1 0 0 2 0
DDX17 WILD-TYPE 68 47 39 14 52 20 21 36 50
'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0899 (Fisher's exact test), Q value = 0.33

Table S8824.  Gene #851: 'DDX17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DDX17 MUTATED 0 0 2 0 2 0
DDX17 WILD-TYPE 13 16 12 11 9 9
'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.73

Table S8825.  Gene #851: 'DDX17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DDX17 MUTATED 0 0 0 2 0 1 1 0 0
DDX17 WILD-TYPE 11 7 7 7 8 6 10 9 5
'TOP2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00106 (Fisher's exact test), Q value = 0.026

Table S8826.  Gene #852: 'TOP2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TOP2A MUTATED 1 2 14
TOP2A WILD-TYPE 41 171 133

Figure S2470.  Get High-res Image Gene #852: 'TOP2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TOP2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S8827.  Gene #852: 'TOP2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TOP2A MUTATED 4 3 8
TOP2A WILD-TYPE 58 70 67
'TOP2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S8828.  Gene #852: 'TOP2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TOP2A MUTATED 2 5 5
TOP2A WILD-TYPE 68 115 95
'TOP2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S8829.  Gene #852: 'TOP2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TOP2A MUTATED 0 1 0 2 1 5 1 1 1
TOP2A WILD-TYPE 41 25 30 27 38 64 19 13 21
'TOP2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 0.24

Table S8830.  Gene #852: 'TOP2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TOP2A MUTATED 2 7 5 3
TOP2A WILD-TYPE 98 65 67 118

Figure S2471.  Get High-res Image Gene #852: 'TOP2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TOP2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00151 (Fisher's exact test), Q value = 0.032

Table S8831.  Gene #852: 'TOP2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TOP2A MUTATED 0 4 10 3 0
TOP2A WILD-TYPE 59 71 64 116 38

Figure S2472.  Get High-res Image Gene #852: 'TOP2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TOP2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00166 (Fisher's exact test), Q value = 0.034

Table S8832.  Gene #852: 'TOP2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TOP2A MUTATED 2 11 1 1 2
TOP2A WILD-TYPE 49 65 60 70 93

Figure S2473.  Get High-res Image Gene #852: 'TOP2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TOP2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S8833.  Gene #852: 'TOP2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TOP2A MUTATED 6 3 0 4 2 0 1 0 1
TOP2A WILD-TYPE 63 45 39 12 51 20 20 38 49

Figure S2474.  Get High-res Image Gene #852: 'TOP2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CACNG3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0888 (Fisher's exact test), Q value = 0.32

Table S8834.  Gene #853: 'CACNG3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CACNG3 MUTATED 2 2 0 1 0
CACNG3 WILD-TYPE 30 16 46 26 23
'CACNG3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0673 (Fisher's exact test), Q value = 0.28

Table S8835.  Gene #853: 'CACNG3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CACNG3 MUTATED 4 1 0
CACNG3 WILD-TYPE 39 66 36
'CACNG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00756 (Fisher's exact test), Q value = 0.081

Table S8836.  Gene #853: 'CACNG3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CACNG3 MUTATED 0 0 7
CACNG3 WILD-TYPE 42 173 140

Figure S2475.  Get High-res Image Gene #853: 'CACNG3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CACNG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S8837.  Gene #853: 'CACNG3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CACNG3 MUTATED 1 0 2
CACNG3 WILD-TYPE 61 73 73
'CACNG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S8838.  Gene #853: 'CACNG3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CACNG3 MUTATED 3 2 3
CACNG3 WILD-TYPE 67 118 97
'CACNG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S8839.  Gene #853: 'CACNG3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CACNG3 MUTATED 2 2 1 0 1 2 0 0 0
CACNG3 WILD-TYPE 39 24 29 29 38 67 20 14 22
'CACNG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S8840.  Gene #853: 'CACNG3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CACNG3 MUTATED 0 2 2 4
CACNG3 WILD-TYPE 100 70 70 117
'CACNG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S8841.  Gene #853: 'CACNG3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CACNG3 MUTATED 1 0 1 4 2
CACNG3 WILD-TYPE 58 75 73 115 36
'CACNG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S8842.  Gene #853: 'CACNG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CACNG3 MUTATED 0 0 3 0 5
CACNG3 WILD-TYPE 51 76 58 71 90

Figure S2476.  Get High-res Image Gene #853: 'CACNG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CACNG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00137 (Fisher's exact test), Q value = 0.03

Table S8843.  Gene #853: 'CACNG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CACNG3 MUTATED 0 1 0 0 0 1 3 3 0
CACNG3 WILD-TYPE 69 47 39 16 53 19 18 35 50

Figure S2477.  Get High-res Image Gene #853: 'CACNG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CBX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.098

Table S8844.  Gene #854: 'CBX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CBX3 MUTATED 0 0 6
CBX3 WILD-TYPE 42 173 141

Figure S2478.  Get High-res Image Gene #854: 'CBX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CBX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0375 (Fisher's exact test), Q value = 0.21

Table S8845.  Gene #854: 'CBX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CBX3 MUTATED 0 0 4
CBX3 WILD-TYPE 62 73 71

Figure S2479.  Get High-res Image Gene #854: 'CBX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CBX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S8846.  Gene #854: 'CBX3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CBX3 MUTATED 0 1 4
CBX3 WILD-TYPE 70 119 96
'CBX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S8847.  Gene #854: 'CBX3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CBX3 MUTATED 0 1 0 0 0 3 1 0 0
CBX3 WILD-TYPE 41 25 30 29 39 66 19 14 22
'CBX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S8848.  Gene #854: 'CBX3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CBX3 MUTATED 0 4 0 2
CBX3 WILD-TYPE 100 68 72 119

Figure S2480.  Get High-res Image Gene #854: 'CBX3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CBX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0335 (Fisher's exact test), Q value = 0.19

Table S8849.  Gene #854: 'CBX3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CBX3 MUTATED 0 1 3 0 2
CBX3 WILD-TYPE 59 74 71 119 36

Figure S2481.  Get High-res Image Gene #854: 'CBX3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CBX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.32

Table S8850.  Gene #854: 'CBX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CBX3 MUTATED 0 4 0 0 2
CBX3 WILD-TYPE 51 72 61 71 93
'CBX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0575 (Fisher's exact test), Q value = 0.26

Table S8851.  Gene #854: 'CBX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CBX3 MUTATED 1 0 0 2 1 0 0 2 0
CBX3 WILD-TYPE 68 48 39 14 52 20 21 36 50
'DLL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.19

Table S8852.  Gene #855: 'DLL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DLL3 MUTATED 1 0 5
DLL3 WILD-TYPE 41 173 142

Figure S2482.  Get High-res Image Gene #855: 'DLL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DLL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S8853.  Gene #855: 'DLL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DLL3 MUTATED 2 0 2
DLL3 WILD-TYPE 60 73 73
'DLL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.5

Table S8854.  Gene #855: 'DLL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DLL3 MUTATED 0 2 4
DLL3 WILD-TYPE 70 118 96
'DLL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S8855.  Gene #855: 'DLL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DLL3 MUTATED 0 0 1 1 1 2 1 0 0
DLL3 WILD-TYPE 41 26 29 28 38 67 19 14 22
'DLL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S8856.  Gene #855: 'DLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DLL3 MUTATED 0 2 2 2
DLL3 WILD-TYPE 100 70 70 119
'DLL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.053 (Fisher's exact test), Q value = 0.25

Table S8857.  Gene #855: 'DLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DLL3 MUTATED 0 0 4 1 1
DLL3 WILD-TYPE 59 75 70 118 37
'DLL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0861 (Fisher's exact test), Q value = 0.32

Table S8858.  Gene #855: 'DLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DLL3 MUTATED 0 4 0 0 2
DLL3 WILD-TYPE 51 72 61 71 93
'DLL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S8859.  Gene #855: 'DLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DLL3 MUTATED 0 2 0 2 0 1 0 1 0
DLL3 WILD-TYPE 69 46 39 14 53 19 21 37 50

Figure S2483.  Get High-res Image Gene #855: 'DLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIFAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00214 (Fisher's exact test), Q value = 0.039

Table S8860.  Gene #856: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIFAP3 MUTATED 0 0 8
KIFAP3 WILD-TYPE 42 173 139

Figure S2484.  Get High-res Image Gene #856: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIFAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S8861.  Gene #856: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIFAP3 MUTATED 2 0 4
KIFAP3 WILD-TYPE 60 73 71
'KIFAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S8862.  Gene #856: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIFAP3 MUTATED 2 1 5
KIFAP3 WILD-TYPE 68 119 95
'KIFAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S8863.  Gene #856: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIFAP3 MUTATED 1 1 1 0 1 3 1 0 0
KIFAP3 WILD-TYPE 40 25 29 29 38 66 19 14 22
'KIFAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S8864.  Gene #856: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIFAP3 MUTATED 0 4 2 3
KIFAP3 WILD-TYPE 100 68 70 118
'KIFAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S8865.  Gene #856: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIFAP3 MUTATED 1 0 4 2 2
KIFAP3 WILD-TYPE 58 75 70 117 36
'KIFAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S8866.  Gene #856: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIFAP3 MUTATED 0 4 1 0 3
KIFAP3 WILD-TYPE 51 72 60 71 92
'KIFAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.16

Table S8867.  Gene #856: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIFAP3 MUTATED 1 2 0 2 0 0 0 3 0
KIFAP3 WILD-TYPE 68 46 39 14 53 20 21 35 50

Figure S2485.  Get High-res Image Gene #856: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CRYGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.062 (Fisher's exact test), Q value = 0.27

Table S8868.  Gene #857: 'CRYGA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CRYGA MUTATED 1 0 4
CRYGA WILD-TYPE 41 173 143
'CRYGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.1

Table S8869.  Gene #857: 'CRYGA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CRYGA MUTATED 0 0 5
CRYGA WILD-TYPE 62 73 70

Figure S2486.  Get High-res Image Gene #857: 'CRYGA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CRYGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S8870.  Gene #857: 'CRYGA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CRYGA MUTATED 0 1 4
CRYGA WILD-TYPE 70 119 96
'CRYGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S8871.  Gene #857: 'CRYGA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CRYGA MUTATED 0 0 0 1 0 4 0 0 0
CRYGA WILD-TYPE 41 26 30 28 39 65 20 14 22
'CRYGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.018

Table S8872.  Gene #857: 'CRYGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CRYGA MUTATED 0 5 0 0
CRYGA WILD-TYPE 100 67 72 121

Figure S2487.  Get High-res Image Gene #857: 'CRYGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CRYGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.15

Table S8873.  Gene #857: 'CRYGA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CRYGA MUTATED 0 1 4 0 0
CRYGA WILD-TYPE 59 74 70 119 38

Figure S2488.  Get High-res Image Gene #857: 'CRYGA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CRYGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00166 (Fisher's exact test), Q value = 0.034

Table S8874.  Gene #857: 'CRYGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CRYGA MUTATED 0 5 0 0 0
CRYGA WILD-TYPE 51 71 61 71 95

Figure S2489.  Get High-res Image Gene #857: 'CRYGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CRYGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00304 (Fisher's exact test), Q value = 0.048

Table S8875.  Gene #857: 'CRYGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CRYGA MUTATED 1 0 0 3 1 0 0 0 0
CRYGA WILD-TYPE 68 48 39 13 52 20 21 38 50

Figure S2490.  Get High-res Image Gene #857: 'CRYGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MCF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.34

Table S8876.  Gene #858: 'MCF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MCF2 MUTATED 5 1 1 2 0
MCF2 WILD-TYPE 27 17 45 25 23
'MCF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0205 (Fisher's exact test), Q value = 0.15

Table S8877.  Gene #858: 'MCF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MCF2 MUTATED 6 1 2
MCF2 WILD-TYPE 37 66 34

Figure S2491.  Get High-res Image Gene #858: 'MCF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MCF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00054 (Fisher's exact test), Q value = 0.017

Table S8878.  Gene #858: 'MCF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MCF2 MUTATED 2 5 21
MCF2 WILD-TYPE 40 168 126

Figure S2492.  Get High-res Image Gene #858: 'MCF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MCF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0466 (Fisher's exact test), Q value = 0.23

Table S8879.  Gene #858: 'MCF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MCF2 MUTATED 7 2 10
MCF2 WILD-TYPE 55 71 65

Figure S2493.  Get High-res Image Gene #858: 'MCF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MCF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S8880.  Gene #858: 'MCF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MCF2 MUTATED 3 9 11
MCF2 WILD-TYPE 67 111 89
'MCF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S8881.  Gene #858: 'MCF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MCF2 MUTATED 3 1 1 4 3 8 1 1 1
MCF2 WILD-TYPE 38 25 29 25 36 61 19 13 21
'MCF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S8882.  Gene #858: 'MCF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MCF2 MUTATED 4 10 5 9
MCF2 WILD-TYPE 96 62 67 112
'MCF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0854 (Fisher's exact test), Q value = 0.32

Table S8883.  Gene #858: 'MCF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MCF2 MUTATED 2 5 11 6 4
MCF2 WILD-TYPE 57 70 63 113 34
'MCF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0451 (Fisher's exact test), Q value = 0.23

Table S8884.  Gene #858: 'MCF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MCF2 MUTATED 2 12 2 3 8
MCF2 WILD-TYPE 49 64 59 68 87

Figure S2494.  Get High-res Image Gene #858: 'MCF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MCF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S8885.  Gene #858: 'MCF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MCF2 MUTATED 7 4 0 3 2 3 1 4 3
MCF2 WILD-TYPE 62 44 39 13 51 17 20 34 47
'MCF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S8886.  Gene #858: 'MCF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MCF2 MUTATED 0 1 0 0 2 0
MCF2 WILD-TYPE 13 15 14 11 9 9
'MCF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S8887.  Gene #858: 'MCF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MCF2 MUTATED 0 0 0 1 0 1 1 0 0
MCF2 WILD-TYPE 11 7 7 8 8 6 10 9 5
'USP16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S8888.  Gene #859: 'USP16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
USP16 MUTATED 2 1 0 1 0
USP16 WILD-TYPE 30 17 46 26 23
'USP16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S8889.  Gene #859: 'USP16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
USP16 MUTATED 2 1 1
USP16 WILD-TYPE 41 66 35
'USP16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S8890.  Gene #859: 'USP16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
USP16 MUTATED 0 3 5
USP16 WILD-TYPE 42 170 142
'USP16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8891.  Gene #859: 'USP16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
USP16 MUTATED 1 1 2
USP16 WILD-TYPE 61 72 73
'USP16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.93

Table S8892.  Gene #859: 'USP16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
USP16 MUTATED 2 1 2
USP16 WILD-TYPE 68 119 98
'USP16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S8893.  Gene #859: 'USP16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
USP16 MUTATED 0 0 1 0 0 2 1 0 1
USP16 WILD-TYPE 41 26 29 29 39 67 19 14 21
'USP16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S8894.  Gene #859: 'USP16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
USP16 MUTATED 0 2 2 4
USP16 WILD-TYPE 100 70 70 117
'USP16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.78

Table S8895.  Gene #859: 'USP16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
USP16 MUTATED 0 2 2 2 2
USP16 WILD-TYPE 59 73 72 117 36
'USP16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.96

Table S8896.  Gene #859: 'USP16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
USP16 MUTATED 2 2 0 1 2
USP16 WILD-TYPE 49 74 61 70 93
'USP16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S8897.  Gene #859: 'USP16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
USP16 MUTATED 0 1 1 1 2 1 1 0 0
USP16 WILD-TYPE 69 47 38 15 51 19 20 38 50
'ASPM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00564 (Fisher's exact test), Q value = 0.071

Table S8898.  Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ASPM MUTATED 8 0 2 3 0
ASPM WILD-TYPE 24 18 44 24 23

Figure S2495.  Get High-res Image Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ASPM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00796 (Fisher's exact test), Q value = 0.084

Table S8899.  Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ASPM MUTATED 9 3 1
ASPM WILD-TYPE 34 64 35

Figure S2496.  Get High-res Image Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ASPM MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S8900.  Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ASPM MUTATED 4 7 31
ASPM WILD-TYPE 38 166 116

Figure S2497.  Get High-res Image Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ASPM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.76

Table S8901.  Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ASPM MUTATED 10 7 12
ASPM WILD-TYPE 52 66 63
'ASPM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S8902.  Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ASPM MUTATED 3 13 19
ASPM WILD-TYPE 67 107 81

Figure S2498.  Get High-res Image Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ASPM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S8903.  Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ASPM MUTATED 4 3 3 3 3 16 0 2 1
ASPM WILD-TYPE 37 23 27 26 36 53 20 12 21
'ASPM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S8904.  Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ASPM MUTATED 8 10 11 13
ASPM WILD-TYPE 92 62 61 108
'ASPM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00206 (Fisher's exact test), Q value = 0.038

Table S8905.  Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ASPM MUTATED 6 8 14 5 9
ASPM WILD-TYPE 53 67 60 114 29

Figure S2499.  Get High-res Image Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ASPM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S8906.  Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ASPM MUTATED 4 13 9 4 9
ASPM WILD-TYPE 47 63 52 67 86
'ASPM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0549 (Fisher's exact test), Q value = 0.25

Table S8907.  Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ASPM MUTATED 7 7 4 6 5 1 0 6 3
ASPM WILD-TYPE 62 41 35 10 48 19 21 32 47
'ASPM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.19

Table S8908.  Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ASPM MUTATED 0 0 2 2 4 2
ASPM WILD-TYPE 13 16 12 9 7 7

Figure S2500.  Get High-res Image Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ASPM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S8909.  Gene #860: 'ASPM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ASPM MUTATED 1 0 1 2 0 2 4 0 0
ASPM WILD-TYPE 10 7 6 7 8 5 7 9 5
'MACC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00912 (Fisher's exact test), Q value = 0.09

Table S8910.  Gene #861: 'MACC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MACC1 MUTATED 5 0 0 2 0
MACC1 WILD-TYPE 27 18 46 25 23

Figure S2501.  Get High-res Image Gene #861: 'MACC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MACC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0345 (Fisher's exact test), Q value = 0.2

Table S8911.  Gene #861: 'MACC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MACC1 MUTATED 5 2 0
MACC1 WILD-TYPE 38 65 36

Figure S2502.  Get High-res Image Gene #861: 'MACC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MACC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00418 (Fisher's exact test), Q value = 0.058

Table S8912.  Gene #861: 'MACC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MACC1 MUTATED 1 3 14
MACC1 WILD-TYPE 41 170 133

Figure S2503.  Get High-res Image Gene #861: 'MACC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MACC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S8913.  Gene #861: 'MACC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MACC1 MUTATED 4 1 5
MACC1 WILD-TYPE 58 72 70
'MACC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S8914.  Gene #861: 'MACC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MACC1 MUTATED 4 5 5
MACC1 WILD-TYPE 66 115 95
'MACC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S8915.  Gene #861: 'MACC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MACC1 MUTATED 1 0 3 3 3 3 0 0 1
MACC1 WILD-TYPE 40 26 27 26 36 66 20 14 21
'MACC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.65

Table S8916.  Gene #861: 'MACC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MACC1 MUTATED 2 5 3 8
MACC1 WILD-TYPE 98 67 69 113
'MACC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00639 (Fisher's exact test), Q value = 0.075

Table S8917.  Gene #861: 'MACC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MACC1 MUTATED 1 3 6 2 6
MACC1 WILD-TYPE 58 72 68 117 32

Figure S2504.  Get High-res Image Gene #861: 'MACC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MACC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S8918.  Gene #861: 'MACC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MACC1 MUTATED 0 6 2 2 7
MACC1 WILD-TYPE 51 70 59 69 88
'MACC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S8919.  Gene #861: 'MACC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MACC1 MUTATED 3 2 2 2 2 1 0 5 0
MACC1 WILD-TYPE 66 46 37 14 51 19 21 33 50
'MACC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S8920.  Gene #861: 'MACC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MACC1 MUTATED 0 2 0 0 1 1
MACC1 WILD-TYPE 13 14 14 11 10 8
'MACC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S8921.  Gene #861: 'MACC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MACC1 MUTATED 1 1 0 1 0 0 0 1 0
MACC1 WILD-TYPE 10 6 7 8 8 7 11 8 5
'YLPM1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S8922.  Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
YLPM1 MUTATED 3 0 1 2 1
YLPM1 WILD-TYPE 29 18 45 25 22
'YLPM1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S8923.  Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
YLPM1 MUTATED 2 4 1
YLPM1 WILD-TYPE 41 63 35
'YLPM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S8924.  Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
YLPM1 MUTATED 1 2 18
YLPM1 WILD-TYPE 41 171 129

Figure S2505.  Get High-res Image Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'YLPM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00525 (Fisher's exact test), Q value = 0.068

Table S8925.  Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
YLPM1 MUTATED 5 0 9
YLPM1 WILD-TYPE 57 73 66

Figure S2506.  Get High-res Image Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'YLPM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S8926.  Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
YLPM1 MUTATED 4 5 8
YLPM1 WILD-TYPE 66 115 92
'YLPM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S8927.  Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
YLPM1 MUTATED 2 2 1 1 2 6 1 2 0
YLPM1 WILD-TYPE 39 24 29 28 37 63 19 12 22
'YLPM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00074 (Fisher's exact test), Q value = 0.021

Table S8928.  Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
YLPM1 MUTATED 0 10 4 8
YLPM1 WILD-TYPE 100 62 68 113

Figure S2507.  Get High-res Image Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'YLPM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00236 (Fisher's exact test), Q value = 0.041

Table S8929.  Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
YLPM1 MUTATED 1 1 12 6 2
YLPM1 WILD-TYPE 58 74 62 113 36

Figure S2508.  Get High-res Image Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00428 (Fisher's exact test), Q value = 0.059

Table S8930.  Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
YLPM1 MUTATED 0 12 2 3 5
YLPM1 WILD-TYPE 51 64 59 68 90

Figure S2509.  Get High-res Image Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00476 (Fisher's exact test), Q value = 0.064

Table S8931.  Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
YLPM1 MUTATED 4 3 0 6 2 1 2 2 2
YLPM1 WILD-TYPE 65 45 39 10 51 19 19 36 48

Figure S2510.  Get High-res Image Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00589 (Fisher's exact test), Q value = 0.073

Table S8932.  Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
YLPM1 MUTATED 0 0 0 0 3 0
YLPM1 WILD-TYPE 13 16 14 11 8 9

Figure S2511.  Get High-res Image Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S8933.  Gene #862: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
YLPM1 MUTATED 0 0 0 1 0 1 1 0 0
YLPM1 WILD-TYPE 11 7 7 8 8 6 10 9 5
'MIA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S8934.  Gene #863: 'MIA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MIA3 MUTATED 3 0 1 2 1
MIA3 WILD-TYPE 29 18 45 25 22
'MIA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.49

Table S8935.  Gene #863: 'MIA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MIA3 MUTATED 3 1 3
MIA3 WILD-TYPE 40 66 33
'MIA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0075

Table S8936.  Gene #863: 'MIA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MIA3 MUTATED 4 1 14
MIA3 WILD-TYPE 38 172 133

Figure S2512.  Get High-res Image Gene #863: 'MIA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MIA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S8937.  Gene #863: 'MIA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MIA3 MUTATED 5 1 6
MIA3 WILD-TYPE 57 72 69
'MIA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S8938.  Gene #863: 'MIA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MIA3 MUTATED 1 6 7
MIA3 WILD-TYPE 69 114 93
'MIA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S8939.  Gene #863: 'MIA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MIA3 MUTATED 1 1 1 3 1 6 0 1 0
MIA3 WILD-TYPE 40 25 29 26 38 63 20 13 22
'MIA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 0.24

Table S8940.  Gene #863: 'MIA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MIA3 MUTATED 1 7 3 8
MIA3 WILD-TYPE 99 65 69 113

Figure S2513.  Get High-res Image Gene #863: 'MIA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MIA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S8941.  Gene #863: 'MIA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MIA3 MUTATED 1 3 7 5 3
MIA3 WILD-TYPE 58 72 67 114 35
'MIA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.74

Table S8942.  Gene #863: 'MIA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MIA3 MUTATED 2 7 1 3 5
MIA3 WILD-TYPE 49 69 60 68 90
'MIA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0786 (Fisher's exact test), Q value = 0.3

Table S8943.  Gene #863: 'MIA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MIA3 MUTATED 1 4 1 3 1 2 0 2 4
MIA3 WILD-TYPE 68 44 38 13 52 18 21 36 46
'MIA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0065

Table S8944.  Gene #863: 'MIA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MIA3 MUTATED 0 0 0 0 5 0
MIA3 WILD-TYPE 13 16 14 11 6 9

Figure S2514.  Get High-res Image Gene #863: 'MIA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MIA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0518 (Fisher's exact test), Q value = 0.24

Table S8945.  Gene #863: 'MIA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MIA3 MUTATED 0 0 0 3 0 0 2 0 0
MIA3 WILD-TYPE 11 7 7 6 8 7 9 9 5
'SLC7A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.35

Table S8946.  Gene #864: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC7A6 MUTATED 2 1 3
SLC7A6 WILD-TYPE 40 172 144
'SLC7A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S8947.  Gene #864: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC7A6 MUTATED 1 2 3
SLC7A6 WILD-TYPE 61 71 72
'SLC7A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8948.  Gene #864: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC7A6 MUTATED 1 2 2
SLC7A6 WILD-TYPE 69 118 98
'SLC7A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.76

Table S8949.  Gene #864: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC7A6 MUTATED 1 1 0 0 0 1 0 1 1
SLC7A6 WILD-TYPE 40 25 30 29 39 68 20 13 21
'SLC7A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S8950.  Gene #864: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC7A6 MUTATED 2 3 1 0
SLC7A6 WILD-TYPE 98 69 71 121
'SLC7A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0875 (Fisher's exact test), Q value = 0.32

Table S8951.  Gene #864: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC7A6 MUTATED 2 1 3 0 0
SLC7A6 WILD-TYPE 57 74 71 119 38
'SLC7A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.2

Table S8952.  Gene #864: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC7A6 MUTATED 3 2 1 0 0
SLC7A6 WILD-TYPE 48 74 60 71 95

Figure S2515.  Get High-res Image Gene #864: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SLC7A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0717 (Fisher's exact test), Q value = 0.29

Table S8953.  Gene #864: 'SLC7A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC7A6 MUTATED 2 0 0 1 1 2 0 0 0
SLC7A6 WILD-TYPE 67 48 39 15 52 18 21 38 50
'TGFBR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S8954.  Gene #865: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TGFBR2 MUTATED 1 2 1 2 0
TGFBR2 WILD-TYPE 31 16 45 25 23
'TGFBR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.88

Table S8955.  Gene #865: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TGFBR2 MUTATED 3 2 1
TGFBR2 WILD-TYPE 40 65 35
'TGFBR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00431 (Fisher's exact test), Q value = 0.06

Table S8956.  Gene #865: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TGFBR2 MUTATED 3 3 14
TGFBR2 WILD-TYPE 39 170 133

Figure S2516.  Get High-res Image Gene #865: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TGFBR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.94

Table S8957.  Gene #865: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TGFBR2 MUTATED 5 3 5
TGFBR2 WILD-TYPE 57 70 70
'TGFBR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S8958.  Gene #865: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TGFBR2 MUTATED 5 7 7
TGFBR2 WILD-TYPE 65 113 93
'TGFBR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S8959.  Gene #865: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TGFBR2 MUTATED 3 0 3 1 2 6 0 3 1
TGFBR2 WILD-TYPE 38 26 27 28 37 63 20 11 21
'TGFBR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S8960.  Gene #865: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TGFBR2 MUTATED 3 8 4 6
TGFBR2 WILD-TYPE 97 64 68 115
'TGFBR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.057 (Fisher's exact test), Q value = 0.25

Table S8961.  Gene #865: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TGFBR2 MUTATED 3 1 9 5 3
TGFBR2 WILD-TYPE 56 74 65 114 35
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.53

Table S8962.  Gene #865: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TGFBR2 MUTATED 2 6 6 1 5
TGFBR2 WILD-TYPE 49 70 55 70 90
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.029 (Fisher's exact test), Q value = 0.18

Table S8963.  Gene #865: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TGFBR2 MUTATED 1 2 3 4 2 1 2 4 1
TGFBR2 WILD-TYPE 68 46 36 12 51 19 19 34 49

Figure S2517.  Get High-res Image Gene #865: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.22

Table S8964.  Gene #865: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TGFBR2 MUTATED 0 0 3 2 0 0
TGFBR2 WILD-TYPE 13 16 11 9 11 9

Figure S2518.  Get High-res Image Gene #865: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S8965.  Gene #865: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TGFBR2 MUTATED 0 0 1 0 2 1 1 0 0
TGFBR2 WILD-TYPE 11 7 6 9 6 6 10 9 5
'RAB42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.062 (Fisher's exact test), Q value = 0.27

Table S8966.  Gene #866: 'RAB42 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RAB42 MUTATED 0 0 4
RAB42 WILD-TYPE 42 173 143
'RAB42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S8967.  Gene #866: 'RAB42 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RAB42 MUTATED 2 0 1
RAB42 WILD-TYPE 60 73 74
'RAB42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S8968.  Gene #866: 'RAB42 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RAB42 MUTATED 1 0 2
RAB42 WILD-TYPE 69 120 98
'RAB42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S8969.  Gene #866: 'RAB42 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RAB42 MUTATED 0 0 1 0 0 1 1 0 0
RAB42 WILD-TYPE 41 26 29 29 39 68 19 14 22
'RAB42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S8970.  Gene #866: 'RAB42 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RAB42 MUTATED 0 2 1 1
RAB42 WILD-TYPE 100 70 71 120
'RAB42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0262 (Fisher's exact test), Q value = 0.17

Table S8971.  Gene #866: 'RAB42 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RAB42 MUTATED 0 0 3 0 1
RAB42 WILD-TYPE 59 75 71 119 37

Figure S2519.  Get High-res Image Gene #866: 'RAB42 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RAB42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S8972.  Gene #866: 'RAB42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RAB42 MUTATED 0 3 0 0 1
RAB42 WILD-TYPE 51 73 61 71 94
'RAB42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S8973.  Gene #866: 'RAB42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RAB42 MUTATED 1 0 0 1 0 1 0 1 0
RAB42 WILD-TYPE 68 48 39 15 53 19 21 37 50
'PIK3C3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0991 (Fisher's exact test), Q value = 0.34

Table S8974.  Gene #867: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PIK3C3 MUTATED 3 0 0 1 0
PIK3C3 WILD-TYPE 29 18 46 26 23
'PIK3C3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00979 (Fisher's exact test), Q value = 0.093

Table S8975.  Gene #867: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PIK3C3 MUTATED 4 0 0
PIK3C3 WILD-TYPE 39 67 36

Figure S2520.  Get High-res Image Gene #867: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PIK3C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.12

Table S8976.  Gene #867: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PIK3C3 MUTATED 1 6 16
PIK3C3 WILD-TYPE 41 167 131

Figure S2521.  Get High-res Image Gene #867: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIK3C3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.92

Table S8977.  Gene #867: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PIK3C3 MUTATED 7 5 6
PIK3C3 WILD-TYPE 55 68 69
'PIK3C3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 0.32

Table S8978.  Gene #867: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PIK3C3 MUTATED 4 5 12
PIK3C3 WILD-TYPE 66 115 88
'PIK3C3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S8979.  Gene #867: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PIK3C3 MUTATED 3 1 1 1 2 10 2 0 1
PIK3C3 WILD-TYPE 38 25 29 28 37 59 18 14 21
'PIK3C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S8980.  Gene #867: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PIK3C3 MUTATED 4 6 7 6
PIK3C3 WILD-TYPE 96 66 65 115
'PIK3C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00254 (Fisher's exact test), Q value = 0.043

Table S8981.  Gene #867: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PIK3C3 MUTATED 4 4 9 1 5
PIK3C3 WILD-TYPE 55 71 65 118 33

Figure S2522.  Get High-res Image Gene #867: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.62

Table S8982.  Gene #867: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PIK3C3 MUTATED 3 9 3 2 6
PIK3C3 WILD-TYPE 48 67 58 69 89
'PIK3C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S8983.  Gene #867: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PIK3C3 MUTATED 4 7 1 2 2 1 0 6 0
PIK3C3 WILD-TYPE 65 41 38 14 51 19 21 32 50

Figure S2523.  Get High-res Image Gene #867: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PIK3C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S8984.  Gene #867: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PIK3C3 MUTATED 1 0 0 2 2 0
PIK3C3 WILD-TYPE 12 16 14 9 9 9
'PIK3C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S8985.  Gene #867: 'PIK3C3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PIK3C3 MUTATED 0 0 1 1 0 0 2 1 0
PIK3C3 WILD-TYPE 11 7 6 8 8 7 9 8 5
'FAM189B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0554 (Fisher's exact test), Q value = 0.25

Table S8986.  Gene #868: 'FAM189B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FAM189B MUTATED 3 0 0 0 0
FAM189B WILD-TYPE 29 18 46 27 23
'FAM189B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0379 (Fisher's exact test), Q value = 0.21

Table S8987.  Gene #868: 'FAM189B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FAM189B MUTATED 3 0 0
FAM189B WILD-TYPE 40 67 36

Figure S2524.  Get High-res Image Gene #868: 'FAM189B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FAM189B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00067 (Fisher's exact test), Q value = 0.019

Table S8988.  Gene #868: 'FAM189B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM189B MUTATED 1 0 10
FAM189B WILD-TYPE 41 173 137

Figure S2525.  Get High-res Image Gene #868: 'FAM189B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM189B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0689 (Fisher's exact test), Q value = 0.28

Table S8989.  Gene #868: 'FAM189B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM189B MUTATED 3 0 5
FAM189B WILD-TYPE 59 73 70
'FAM189B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S8990.  Gene #868: 'FAM189B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM189B MUTATED 2 2 5
FAM189B WILD-TYPE 68 118 95
'FAM189B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S8991.  Gene #868: 'FAM189B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM189B MUTATED 1 0 1 1 0 6 0 0 0
FAM189B WILD-TYPE 40 26 29 28 39 63 20 14 22
'FAM189B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 0.24

Table S8992.  Gene #868: 'FAM189B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM189B MUTATED 0 4 4 3
FAM189B WILD-TYPE 100 68 68 118
'FAM189B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0031 (Fisher's exact test), Q value = 0.048

Table S8993.  Gene #868: 'FAM189B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM189B MUTATED 1 0 7 1 2
FAM189B WILD-TYPE 58 75 67 118 36

Figure S2526.  Get High-res Image Gene #868: 'FAM189B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM189B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 0.26

Table S8994.  Gene #868: 'FAM189B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM189B MUTATED 0 5 3 0 2
FAM189B WILD-TYPE 51 71 58 71 93
'FAM189B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00059 (Fisher's exact test), Q value = 0.018

Table S8995.  Gene #868: 'FAM189B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM189B MUTATED 1 3 0 4 0 0 1 1 0
FAM189B WILD-TYPE 68 45 39 12 53 20 20 37 50

Figure S2527.  Get High-res Image Gene #868: 'FAM189B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM189B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.75

Table S8996.  Gene #868: 'FAM189B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FAM189B MUTATED 0 2 0 0 1 0
FAM189B WILD-TYPE 13 14 14 11 10 9
'FAM189B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S8997.  Gene #868: 'FAM189B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FAM189B MUTATED 1 1 0 1 0 0 0 0 0
FAM189B WILD-TYPE 10 6 7 8 8 7 11 9 5
'SLC24A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.74

Table S8998.  Gene #869: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC24A2 MUTATED 3 0 1 1 0
SLC24A2 WILD-TYPE 29 18 45 26 23
'SLC24A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S8999.  Gene #869: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC24A2 MUTATED 3 2 0
SLC24A2 WILD-TYPE 40 65 36
'SLC24A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.2

Table S9000.  Gene #869: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC24A2 MUTATED 0 5 12
SLC24A2 WILD-TYPE 42 168 135

Figure S2528.  Get High-res Image Gene #869: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC24A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S9001.  Gene #869: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC24A2 MUTATED 4 3 5
SLC24A2 WILD-TYPE 58 70 70
'SLC24A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.65

Table S9002.  Gene #869: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC24A2 MUTATED 2 5 8
SLC24A2 WILD-TYPE 68 115 92
'SLC24A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S9003.  Gene #869: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC24A2 MUTATED 1 0 3 1 3 6 0 0 1
SLC24A2 WILD-TYPE 40 26 27 28 36 63 20 14 21
'SLC24A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S9004.  Gene #869: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC24A2 MUTATED 4 5 3 5
SLC24A2 WILD-TYPE 96 67 69 116
'SLC24A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S9005.  Gene #869: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC24A2 MUTATED 2 5 5 3 2
SLC24A2 WILD-TYPE 57 70 69 116 36
'SLC24A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S9006.  Gene #869: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC24A2 MUTATED 1 4 3 2 6
SLC24A2 WILD-TYPE 50 72 58 69 89
'SLC24A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S9007.  Gene #869: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC24A2 MUTATED 3 4 0 1 2 2 0 3 1
SLC24A2 WILD-TYPE 66 44 39 15 51 18 21 35 49
'SLC24A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S9008.  Gene #869: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLC24A2 MUTATED 2 0 0 0 1 1
SLC24A2 WILD-TYPE 11 16 14 11 10 8
'SLC24A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S9009.  Gene #869: 'SLC24A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLC24A2 MUTATED 0 0 1 0 0 0 1 2 0
SLC24A2 WILD-TYPE 11 7 6 9 8 7 10 7 5
'YES1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S9010.  Gene #870: 'YES1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
YES1 MUTATED 0 3 6
YES1 WILD-TYPE 42 170 141
'YES1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S9011.  Gene #870: 'YES1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
YES1 MUTATED 4 1 3
YES1 WILD-TYPE 58 72 72
'YES1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S9012.  Gene #870: 'YES1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
YES1 MUTATED 2 1 4
YES1 WILD-TYPE 68 119 96
'YES1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S9013.  Gene #870: 'YES1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
YES1 MUTATED 0 0 0 0 0 4 1 1 1
YES1 WILD-TYPE 41 26 30 29 39 65 19 13 21
'YES1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S9014.  Gene #870: 'YES1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
YES1 MUTATED 1 3 4 1
YES1 WILD-TYPE 99 69 68 120
'YES1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0315 (Fisher's exact test), Q value = 0.19

Table S9015.  Gene #870: 'YES1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
YES1 MUTATED 1 1 6 1 0
YES1 WILD-TYPE 58 74 68 118 38

Figure S2529.  Get High-res Image Gene #870: 'YES1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'YES1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S9016.  Gene #870: 'YES1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
YES1 MUTATED 2 4 2 1 0
YES1 WILD-TYPE 49 72 59 70 95
'YES1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0562 (Fisher's exact test), Q value = 0.25

Table S9017.  Gene #870: 'YES1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
YES1 MUTATED 1 4 1 2 1 0 0 0 0
YES1 WILD-TYPE 68 44 38 14 52 20 21 38 50
'YES1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S9018.  Gene #870: 'YES1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
YES1 MUTATED 0 1 0 0 2 0
YES1 WILD-TYPE 13 15 14 11 9 9
'YES1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S9019.  Gene #870: 'YES1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
YES1 MUTATED 0 1 0 0 0 0 2 0 0
YES1 WILD-TYPE 11 6 7 9 8 7 9 9 5
'KIAA0649 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00222 (Fisher's exact test), Q value = 0.04

Table S9020.  Gene #871: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA0649 MUTATED 2 0 8
KIAA0649 WILD-TYPE 40 173 139

Figure S2530.  Get High-res Image Gene #871: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0649 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00529 (Fisher's exact test), Q value = 0.068

Table S9021.  Gene #871: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA0649 MUTATED 1 0 7
KIAA0649 WILD-TYPE 61 73 68

Figure S2531.  Get High-res Image Gene #871: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KIAA0649 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.2

Table S9022.  Gene #871: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA0649 MUTATED 5 1 2
KIAA0649 WILD-TYPE 65 119 98

Figure S2532.  Get High-res Image Gene #871: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KIAA0649 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S9023.  Gene #871: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA0649 MUTATED 2 0 0 1 2 2 1 0 0
KIAA0649 WILD-TYPE 39 26 30 28 37 67 19 14 22
'KIAA0649 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.15

Table S9024.  Gene #871: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA0649 MUTATED 0 5 3 2
KIAA0649 WILD-TYPE 100 67 69 119

Figure S2533.  Get High-res Image Gene #871: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIAA0649 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0067 (Fisher's exact test), Q value = 0.077

Table S9025.  Gene #871: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA0649 MUTATED 1 0 7 2 0
KIAA0649 WILD-TYPE 58 75 67 117 38

Figure S2534.  Get High-res Image Gene #871: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA0649 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 0.18

Table S9026.  Gene #871: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA0649 MUTATED 0 6 2 0 2
KIAA0649 WILD-TYPE 51 70 59 71 93

Figure S2535.  Get High-res Image Gene #871: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIAA0649 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00078 (Fisher's exact test), Q value = 0.021

Table S9027.  Gene #871: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA0649 MUTATED 1 1 0 4 1 0 2 1 0
KIAA0649 WILD-TYPE 68 47 39 12 52 20 19 37 50

Figure S2536.  Get High-res Image Gene #871: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TCEAL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S9028.  Gene #872: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TCEAL5 MUTATED 0 2 3
TCEAL5 WILD-TYPE 42 171 144
'TCEAL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9029.  Gene #872: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TCEAL5 MUTATED 1 1 2
TCEAL5 WILD-TYPE 61 72 73
'TCEAL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9030.  Gene #872: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TCEAL5 MUTATED 1 2 2
TCEAL5 WILD-TYPE 69 118 98
'TCEAL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S9031.  Gene #872: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TCEAL5 MUTATED 1 2 0 0 0 1 1 0 0
TCEAL5 WILD-TYPE 40 24 30 29 39 68 19 14 22
'TCEAL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.3

Table S9032.  Gene #872: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TCEAL5 MUTATED 1 1 3 0
TCEAL5 WILD-TYPE 99 71 69 121
'TCEAL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S9033.  Gene #872: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TCEAL5 MUTATED 1 1 3 0 0
TCEAL5 WILD-TYPE 58 74 71 119 38
'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S9034.  Gene #872: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TCEAL5 MUTATED 0 2 1 1 1
TCEAL5 WILD-TYPE 51 74 60 70 94
'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S9035.  Gene #872: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TCEAL5 MUTATED 2 1 0 1 0 0 1 0 0
TCEAL5 WILD-TYPE 67 47 39 15 53 20 20 38 50
'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S9036.  Gene #872: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TCEAL5 MUTATED 1 0 1 0 1 0
TCEAL5 WILD-TYPE 12 16 13 11 10 9
'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.46

Table S9037.  Gene #872: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TCEAL5 MUTATED 0 0 0 2 1 0 0 0 0
TCEAL5 WILD-TYPE 11 7 7 7 7 7 11 9 5
'PIK3R4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.17

Table S9038.  Gene #873: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PIK3R4 MUTATED 5 0 0 2 1
PIK3R4 WILD-TYPE 27 18 46 25 22

Figure S2537.  Get High-res Image Gene #873: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PIK3R4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S9039.  Gene #873: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PIK3R4 MUTATED 5 2 1
PIK3R4 WILD-TYPE 38 65 35
'PIK3R4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.067 (Fisher's exact test), Q value = 0.28

Table S9040.  Gene #873: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PIK3R4 MUTATED 1 4 11
PIK3R4 WILD-TYPE 41 169 136
'PIK3R4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S9041.  Gene #873: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PIK3R4 MUTATED 1 2 5
PIK3R4 WILD-TYPE 61 71 70
'PIK3R4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S9042.  Gene #873: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PIK3R4 MUTATED 2 7 5
PIK3R4 WILD-TYPE 68 113 95
'PIK3R4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S9043.  Gene #873: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PIK3R4 MUTATED 1 0 2 3 2 5 0 0 1
PIK3R4 WILD-TYPE 40 26 28 26 37 64 20 14 21
'PIK3R4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.24

Table S9044.  Gene #873: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PIK3R4 MUTATED 3 6 0 7
PIK3R4 WILD-TYPE 97 66 72 114

Figure S2538.  Get High-res Image Gene #873: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PIK3R4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S9045.  Gene #873: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PIK3R4 MUTATED 1 2 5 4 4
PIK3R4 WILD-TYPE 58 73 69 115 34
'PIK3R4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 0.97

Table S9046.  Gene #873: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PIK3R4 MUTATED 2 5 1 2 3
PIK3R4 WILD-TYPE 49 71 60 69 92
'PIK3R4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S9047.  Gene #873: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PIK3R4 MUTATED 2 2 1 2 2 1 0 2 1
PIK3R4 WILD-TYPE 67 46 38 14 51 19 21 36 49
'PIK3R4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S9048.  Gene #873: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PIK3R4 MUTATED 1 0 0 1 1 0
PIK3R4 WILD-TYPE 12 16 14 10 10 9
'PIK3R4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S9049.  Gene #873: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PIK3R4 MUTATED 0 0 1 1 0 0 0 0 1
PIK3R4 WILD-TYPE 11 7 6 8 8 7 11 9 4
'MTF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0986 (Fisher's exact test), Q value = 0.34

Table S9050.  Gene #874: 'MTF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MTF1 MUTATED 3 0 0 1 0
MTF1 WILD-TYPE 29 18 46 26 23
'MTF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S9051.  Gene #874: 'MTF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MTF1 MUTATED 2 1 1
MTF1 WILD-TYPE 41 66 35
'MTF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0859 (Fisher's exact test), Q value = 0.32

Table S9052.  Gene #874: 'MTF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MTF1 MUTATED 0 2 7
MTF1 WILD-TYPE 42 171 140
'MTF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S9053.  Gene #874: 'MTF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MTF1 MUTATED 3 0 2
MTF1 WILD-TYPE 59 73 73
'MTF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S9054.  Gene #874: 'MTF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MTF1 MUTATED 1 1 4
MTF1 WILD-TYPE 69 119 96
'MTF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S9055.  Gene #874: 'MTF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MTF1 MUTATED 2 0 0 1 1 1 1 0 0
MTF1 WILD-TYPE 39 26 30 28 38 68 19 14 22
'MTF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0887 (Fisher's exact test), Q value = 0.32

Table S9056.  Gene #874: 'MTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MTF1 MUTATED 0 1 4 4
MTF1 WILD-TYPE 100 71 68 117
'MTF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.92

Table S9057.  Gene #874: 'MTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MTF1 MUTATED 2 1 2 2 2
MTF1 WILD-TYPE 57 74 72 117 36
'MTF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S9058.  Gene #874: 'MTF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MTF1 MUTATED 0 3 2 2 2
MTF1 WILD-TYPE 51 73 59 69 93
'MTF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.74

Table S9059.  Gene #874: 'MTF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MTF1 MUTATED 1 4 0 0 1 0 0 2 1
MTF1 WILD-TYPE 68 44 39 16 52 20 21 36 49
'GAPVD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.65

Table S9060.  Gene #875: 'GAPVD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GAPVD1 MUTATED 2 0 0 1 1
GAPVD1 WILD-TYPE 30 18 46 26 22
'GAPVD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S9061.  Gene #875: 'GAPVD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GAPVD1 MUTATED 2 1 1
GAPVD1 WILD-TYPE 41 66 35
'GAPVD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S9062.  Gene #875: 'GAPVD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GAPVD1 MUTATED 1 5 15
GAPVD1 WILD-TYPE 41 168 132

Figure S2539.  Get High-res Image Gene #875: 'GAPVD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GAPVD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S9063.  Gene #875: 'GAPVD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GAPVD1 MUTATED 9 4 5
GAPVD1 WILD-TYPE 53 69 70
'GAPVD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S9064.  Gene #875: 'GAPVD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GAPVD1 MUTATED 4 5 9
GAPVD1 WILD-TYPE 66 115 91
'GAPVD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.55

Table S9065.  Gene #875: 'GAPVD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GAPVD1 MUTATED 1 2 1 0 1 9 2 1 1
GAPVD1 WILD-TYPE 40 24 29 29 38 60 18 13 21
'GAPVD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S9066.  Gene #875: 'GAPVD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GAPVD1 MUTATED 4 6 8 4
GAPVD1 WILD-TYPE 96 66 64 117
'GAPVD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0193 (Fisher's exact test), Q value = 0.14

Table S9067.  Gene #875: 'GAPVD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GAPVD1 MUTATED 4 4 10 2 2
GAPVD1 WILD-TYPE 55 71 64 117 36

Figure S2540.  Get High-res Image Gene #875: 'GAPVD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GAPVD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S9068.  Gene #875: 'GAPVD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GAPVD1 MUTATED 2 7 7 2 4
GAPVD1 WILD-TYPE 49 69 54 69 91
'GAPVD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0826 (Fisher's exact test), Q value = 0.31

Table S9069.  Gene #875: 'GAPVD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GAPVD1 MUTATED 3 7 1 2 3 2 1 3 0
GAPVD1 WILD-TYPE 66 41 38 14 50 18 20 35 50
'GAPVD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.79

Table S9070.  Gene #875: 'GAPVD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GAPVD1 MUTATED 0 2 1 0 2 0
GAPVD1 WILD-TYPE 13 14 13 11 9 9
'GAPVD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S9071.  Gene #875: 'GAPVD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GAPVD1 MUTATED 2 0 0 1 1 0 1 0 0
GAPVD1 WILD-TYPE 9 7 7 8 7 7 10 9 5
'CCDC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S9072.  Gene #876: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCDC3 MUTATED 0 1 3
CCDC3 WILD-TYPE 42 172 144
'CCDC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S9073.  Gene #876: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCDC3 MUTATED 0 3 1
CCDC3 WILD-TYPE 62 70 74
'CCDC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S9074.  Gene #876: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCDC3 MUTATED 1 1 2
CCDC3 WILD-TYPE 69 119 98
'CCDC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S9075.  Gene #876: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCDC3 MUTATED 0 0 0 0 1 3 0 0 0
CCDC3 WILD-TYPE 41 26 30 29 38 66 20 14 22
'CCDC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S9076.  Gene #876: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCDC3 MUTATED 3 1 0 0
CCDC3 WILD-TYPE 97 71 72 121
'CCDC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.55

Table S9077.  Gene #876: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCDC3 MUTATED 2 1 1 0 0
CCDC3 WILD-TYPE 57 74 73 119 38
'CCDC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S9078.  Gene #876: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCDC3 MUTATED 1 2 0 1 0
CCDC3 WILD-TYPE 50 74 61 70 95
'CCDC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.94

Table S9079.  Gene #876: 'CCDC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCDC3 MUTATED 3 0 0 0 1 0 0 0 0
CCDC3 WILD-TYPE 66 48 39 16 52 20 21 38 50
'SERPINA9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S9080.  Gene #877: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SERPINA9 MUTATED 2 4 4
SERPINA9 WILD-TYPE 40 169 143
'SERPINA9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S9081.  Gene #877: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SERPINA9 MUTATED 5 3 2
SERPINA9 WILD-TYPE 57 70 73
'SERPINA9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.89

Table S9082.  Gene #877: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SERPINA9 MUTATED 1 5 3
SERPINA9 WILD-TYPE 69 115 97
'SERPINA9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.97

Table S9083.  Gene #877: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SERPINA9 MUTATED 0 1 0 2 2 3 0 0 1
SERPINA9 WILD-TYPE 41 25 30 27 37 66 20 14 21
'SERPINA9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S9084.  Gene #877: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SERPINA9 MUTATED 2 3 5 0
SERPINA9 WILD-TYPE 98 69 67 121

Figure S2541.  Get High-res Image Gene #877: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SERPINA9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00315 (Fisher's exact test), Q value = 0.049

Table S9085.  Gene #877: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SERPINA9 MUTATED 5 1 4 0 0
SERPINA9 WILD-TYPE 54 74 70 119 38

Figure S2542.  Get High-res Image Gene #877: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SERPINA9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00422 (Fisher's exact test), Q value = 0.059

Table S9086.  Gene #877: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SERPINA9 MUTATED 1 6 3 0 0
SERPINA9 WILD-TYPE 50 70 58 71 95

Figure S2543.  Get High-res Image Gene #877: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SERPINA9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0981 (Fisher's exact test), Q value = 0.34

Table S9087.  Gene #877: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SERPINA9 MUTATED 3 3 0 2 1 1 0 0 0
SERPINA9 WILD-TYPE 66 45 39 14 52 19 21 38 50
'SERPINA9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S9088.  Gene #877: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SERPINA9 MUTATED 0 1 0 0 2 1
SERPINA9 WILD-TYPE 13 15 14 11 9 8
'SERPINA9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S9089.  Gene #877: 'SERPINA9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SERPINA9 MUTATED 1 1 0 1 0 0 1 0 0
SERPINA9 WILD-TYPE 10 6 7 8 8 7 10 9 5
'ZC3H12C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.25

Table S9090.  Gene #878: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZC3H12C MUTATED 5 0 1 2 0
ZC3H12C WILD-TYPE 27 18 45 25 23
'ZC3H12C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0621 (Fisher's exact test), Q value = 0.27

Table S9091.  Gene #878: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZC3H12C MUTATED 5 1 2
ZC3H12C WILD-TYPE 38 66 34
'ZC3H12C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00603 (Fisher's exact test), Q value = 0.073

Table S9092.  Gene #878: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZC3H12C MUTATED 1 1 10
ZC3H12C WILD-TYPE 41 172 137

Figure S2544.  Get High-res Image Gene #878: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZC3H12C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S9093.  Gene #878: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZC3H12C MUTATED 3 0 1
ZC3H12C WILD-TYPE 59 73 74
'ZC3H12C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.24

Table S9094.  Gene #878: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZC3H12C MUTATED 0 2 6
ZC3H12C WILD-TYPE 70 118 94
'ZC3H12C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S9095.  Gene #878: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZC3H12C MUTATED 1 0 1 0 1 5 0 0 0
ZC3H12C WILD-TYPE 40 26 29 29 38 64 20 14 22
'ZC3H12C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S9096.  Gene #878: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZC3H12C MUTATED 0 3 1 8
ZC3H12C WILD-TYPE 100 69 71 113

Figure S2545.  Get High-res Image Gene #878: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZC3H12C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S9097.  Gene #878: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZC3H12C MUTATED 1 1 2 4 4
ZC3H12C WILD-TYPE 58 74 72 115 34
'ZC3H12C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S9098.  Gene #878: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZC3H12C MUTATED 0 2 1 3 5
ZC3H12C WILD-TYPE 51 74 60 68 90
'ZC3H12C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S9099.  Gene #878: 'ZC3H12C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZC3H12C MUTATED 2 1 0 0 2 1 1 2 2
ZC3H12C WILD-TYPE 67 47 39 16 51 19 20 36 48
'PRRT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S9100.  Gene #879: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRRT2 MUTATED 0 2 4
PRRT2 WILD-TYPE 42 171 143
'PRRT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S9101.  Gene #879: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRRT2 MUTATED 1 1 4
PRRT2 WILD-TYPE 61 72 71
'PRRT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S9102.  Gene #879: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRRT2 MUTATED 1 1 2
PRRT2 WILD-TYPE 69 119 98
'PRRT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S9103.  Gene #879: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRRT2 MUTATED 1 0 0 0 0 2 1 0 0
PRRT2 WILD-TYPE 40 26 30 29 39 67 19 14 22
'PRRT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S9104.  Gene #879: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRRT2 MUTATED 2 3 1 0
PRRT2 WILD-TYPE 98 69 71 121
'PRRT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0246 (Fisher's exact test), Q value = 0.16

Table S9105.  Gene #879: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRRT2 MUTATED 0 2 4 0 0
PRRT2 WILD-TYPE 59 73 70 119 38

Figure S2546.  Get High-res Image Gene #879: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PRRT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00764 (Fisher's exact test), Q value = 0.082

Table S9106.  Gene #879: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRRT2 MUTATED 0 5 0 1 0
PRRT2 WILD-TYPE 51 71 61 70 95

Figure S2547.  Get High-res Image Gene #879: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PRRT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S9107.  Gene #879: 'PRRT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRRT2 MUTATED 1 1 0 2 2 0 0 0 0
PRRT2 WILD-TYPE 68 47 39 14 51 20 21 38 50
'H2AFJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 0.34

Table S9108.  Gene #880: 'H2AFJ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
H2AFJ MUTATED 1 0 2
H2AFJ WILD-TYPE 41 173 145
'H2AFJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S9109.  Gene #880: 'H2AFJ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
H2AFJ MUTATED 1 0 2
H2AFJ WILD-TYPE 61 73 73
'H2AFJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.081 (Fisher's exact test), Q value = 0.31

Table S9110.  Gene #880: 'H2AFJ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
H2AFJ MUTATED 0 2 1 0
H2AFJ WILD-TYPE 100 70 71 121
'H2AFJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S9111.  Gene #880: 'H2AFJ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
H2AFJ MUTATED 1 0 2 0 0
H2AFJ WILD-TYPE 58 75 72 119 38
'H2AFJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S9112.  Gene #880: 'H2AFJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
H2AFJ MUTATED 0 2 1 0 0
H2AFJ WILD-TYPE 51 74 60 71 95
'H2AFJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S9113.  Gene #880: 'H2AFJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
H2AFJ MUTATED 1 0 0 1 1 0 0 0 0
H2AFJ WILD-TYPE 68 48 39 15 52 20 21 38 50
'SLC25A44 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S9114.  Gene #881: 'SLC25A44 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC25A44 MUTATED 0 2 3
SLC25A44 WILD-TYPE 42 171 144
'SLC25A44 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S9115.  Gene #881: 'SLC25A44 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC25A44 MUTATED 1 2 0
SLC25A44 WILD-TYPE 61 71 75
'SLC25A44 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.98

Table S9116.  Gene #881: 'SLC25A44 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC25A44 MUTATED 0 2 2
SLC25A44 WILD-TYPE 70 118 98
'SLC25A44 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S9117.  Gene #881: 'SLC25A44 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC25A44 MUTATED 0 0 0 1 0 1 1 0 1
SLC25A44 WILD-TYPE 41 26 30 28 39 68 19 14 21
'SLC25A44 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S9118.  Gene #881: 'SLC25A44 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC25A44 MUTATED 1 0 2 2
SLC25A44 WILD-TYPE 99 72 70 119
'SLC25A44 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S9119.  Gene #881: 'SLC25A44 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC25A44 MUTATED 1 1 1 0 2
SLC25A44 WILD-TYPE 58 74 73 119 36
'SLC25A44 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S9120.  Gene #881: 'SLC25A44 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC25A44 MUTATED 1 2 0 0 1
SLC25A44 WILD-TYPE 50 74 61 71 94
'SLC25A44 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S9121.  Gene #881: 'SLC25A44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC25A44 MUTATED 0 1 1 0 1 0 0 1 0
SLC25A44 WILD-TYPE 69 47 38 16 52 20 21 37 50
'CHD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00837 (Fisher's exact test), Q value = 0.086

Table S9122.  Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CHD1 MUTATED 6 0 0 2 1
CHD1 WILD-TYPE 26 18 46 25 22

Figure S2548.  Get High-res Image Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CHD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.01

Table S9123.  Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CHD1 MUTATED 8 0 1
CHD1 WILD-TYPE 35 67 35

Figure S2549.  Get High-res Image Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0012 (Fisher's exact test), Q value = 0.028

Table S9124.  Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CHD1 MUTATED 0 5 17
CHD1 WILD-TYPE 42 168 130

Figure S2550.  Get High-res Image Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00359 (Fisher's exact test), Q value = 0.053

Table S9125.  Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CHD1 MUTATED 8 0 6
CHD1 WILD-TYPE 54 73 69

Figure S2551.  Get High-res Image Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.22

Table S9126.  Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CHD1 MUTATED 4 4 12
CHD1 WILD-TYPE 66 116 88

Figure S2552.  Get High-res Image Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S9127.  Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CHD1 MUTATED 5 0 0 1 4 7 2 0 1
CHD1 WILD-TYPE 36 26 30 28 35 62 18 14 21
'CHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.63

Table S9128.  Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CHD1 MUTATED 3 5 7 8
CHD1 WILD-TYPE 97 67 65 113
'CHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.17

Table S9129.  Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CHD1 MUTATED 3 3 9 3 5
CHD1 WILD-TYPE 56 72 65 116 33

Figure S2553.  Get High-res Image Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S9130.  Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CHD1 MUTATED 2 6 4 2 8
CHD1 WILD-TYPE 49 70 57 69 87
'CHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00832 (Fisher's exact test), Q value = 0.086

Table S9131.  Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CHD1 MUTATED 3 8 1 0 0 1 1 6 2
CHD1 WILD-TYPE 66 40 38 16 53 19 20 32 48

Figure S2554.  Get High-res Image Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S9132.  Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CHD1 MUTATED 0 1 1 1 2 1
CHD1 WILD-TYPE 13 15 13 10 9 8
'CHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0609 (Fisher's exact test), Q value = 0.26

Table S9133.  Gene #882: 'CHD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CHD1 MUTATED 0 0 0 0 1 0 4 1 0
CHD1 WILD-TYPE 11 7 7 9 7 7 7 8 5
'ZBTB33 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S9134.  Gene #883: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZBTB33 MUTATED 2 0 0 0 1
ZBTB33 WILD-TYPE 30 18 46 27 22
'ZBTB33 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S9135.  Gene #883: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZBTB33 MUTATED 2 0 1
ZBTB33 WILD-TYPE 41 67 35
'ZBTB33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00245 (Fisher's exact test), Q value = 0.042

Table S9136.  Gene #883: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZBTB33 MUTATED 1 2 13
ZBTB33 WILD-TYPE 41 171 134

Figure S2555.  Get High-res Image Gene #883: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZBTB33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S9137.  Gene #883: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZBTB33 MUTATED 3 2 6
ZBTB33 WILD-TYPE 59 71 69
'ZBTB33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S9138.  Gene #883: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZBTB33 MUTATED 2 5 8
ZBTB33 WILD-TYPE 68 115 92
'ZBTB33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0817 (Fisher's exact test), Q value = 0.31

Table S9139.  Gene #883: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZBTB33 MUTATED 0 3 1 0 2 6 3 0 0
ZBTB33 WILD-TYPE 41 23 29 29 37 63 17 14 22
'ZBTB33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.74

Table S9140.  Gene #883: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZBTB33 MUTATED 2 5 4 5
ZBTB33 WILD-TYPE 98 67 68 116
'ZBTB33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0589 (Fisher's exact test), Q value = 0.26

Table S9141.  Gene #883: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZBTB33 MUTATED 1 3 7 2 3
ZBTB33 WILD-TYPE 58 72 67 117 35
'ZBTB33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00903 (Fisher's exact test), Q value = 0.089

Table S9142.  Gene #883: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZBTB33 MUTATED 3 7 0 0 6
ZBTB33 WILD-TYPE 48 69 61 71 89

Figure S2556.  Get High-res Image Gene #883: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ZBTB33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S9143.  Gene #883: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZBTB33 MUTATED 3 2 0 2 2 1 1 3 2
ZBTB33 WILD-TYPE 66 46 39 14 51 19 20 35 48
'ZBTB33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00631 (Fisher's exact test), Q value = 0.074

Table S9144.  Gene #883: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZBTB33 MUTATED 0 0 0 0 3 0
ZBTB33 WILD-TYPE 13 16 14 11 8 9

Figure S2557.  Get High-res Image Gene #883: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ZBTB33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S9145.  Gene #883: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZBTB33 MUTATED 0 0 0 1 0 0 2 0 0
ZBTB33 WILD-TYPE 11 7 7 8 8 7 9 9 5
'ZNF691 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S9146.  Gene #884: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF691 MUTATED 1 2 4
ZNF691 WILD-TYPE 41 171 143
'ZNF691 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9147.  Gene #884: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF691 MUTATED 2 2 2
ZNF691 WILD-TYPE 60 71 73
'ZNF691 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S9148.  Gene #884: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF691 MUTATED 0 3 2
ZNF691 WILD-TYPE 70 117 98
'ZNF691 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S9149.  Gene #884: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF691 MUTATED 0 1 0 2 0 1 1 0 0
ZNF691 WILD-TYPE 41 25 30 27 39 68 19 14 22
'ZNF691 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.78

Table S9150.  Gene #884: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF691 MUTATED 2 3 1 1
ZNF691 WILD-TYPE 98 69 71 120
'ZNF691 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S9151.  Gene #884: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF691 MUTATED 1 2 3 0 1
ZNF691 WILD-TYPE 58 73 71 119 37
'ZNF691 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.23

Table S9152.  Gene #884: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF691 MUTATED 0 5 0 1 1
ZNF691 WILD-TYPE 51 71 61 70 94

Figure S2558.  Get High-res Image Gene #884: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ZNF691 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00231 (Fisher's exact test), Q value = 0.041

Table S9153.  Gene #884: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF691 MUTATED 0 1 2 3 0 0 0 1 0
ZNF691 WILD-TYPE 69 47 37 13 53 20 21 37 50

Figure S2559.  Get High-res Image Gene #884: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF691 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S9154.  Gene #884: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF691 MUTATED 1 0 0 1 1 0
ZNF691 WILD-TYPE 12 16 14 10 10 9
'ZNF691 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S9155.  Gene #884: 'ZNF691 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF691 MUTATED 0 0 0 1 0 0 1 1 0
ZNF691 WILD-TYPE 11 7 7 8 8 7 10 8 5
'EFTUD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.55

Table S9156.  Gene #885: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EFTUD2 MUTATED 3 0 1 0 0
EFTUD2 WILD-TYPE 29 18 45 27 23
'EFTUD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0524 (Fisher's exact test), Q value = 0.25

Table S9157.  Gene #885: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EFTUD2 MUTATED 3 0 1
EFTUD2 WILD-TYPE 40 67 35
'EFTUD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.26

Table S9158.  Gene #885: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EFTUD2 MUTATED 0 4 10
EFTUD2 WILD-TYPE 42 169 137
'EFTUD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S9159.  Gene #885: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EFTUD2 MUTATED 5 1 4
EFTUD2 WILD-TYPE 57 72 71
'EFTUD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S9160.  Gene #885: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EFTUD2 MUTATED 0 5 4
EFTUD2 WILD-TYPE 70 115 96
'EFTUD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 0.98

Table S9161.  Gene #885: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EFTUD2 MUTATED 0 1 1 0 2 3 0 1 1
EFTUD2 WILD-TYPE 41 25 29 29 37 66 20 13 21
'EFTUD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9162.  Gene #885: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EFTUD2 MUTATED 4 2 3 5
EFTUD2 WILD-TYPE 96 70 69 116
'EFTUD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0699 (Fisher's exact test), Q value = 0.29

Table S9163.  Gene #885: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EFTUD2 MUTATED 1 2 5 2 4
EFTUD2 WILD-TYPE 58 73 69 117 34
'EFTUD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.97

Table S9164.  Gene #885: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EFTUD2 MUTATED 1 3 1 3 6
EFTUD2 WILD-TYPE 50 73 60 68 89
'EFTUD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.78

Table S9165.  Gene #885: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EFTUD2 MUTATED 1 2 1 1 3 1 0 4 1
EFTUD2 WILD-TYPE 68 46 38 15 50 19 21 34 49
'EFTUD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.55

Table S9166.  Gene #885: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EFTUD2 MUTATED 0 0 3 1 1 1
EFTUD2 WILD-TYPE 13 16 11 10 10 8
'EFTUD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S9167.  Gene #885: 'EFTUD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EFTUD2 MUTATED 0 0 0 0 1 1 1 2 1
EFTUD2 WILD-TYPE 11 7 7 9 7 6 10 7 4
'METTL9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S9168.  Gene #886: 'METTL9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
METTL9 MUTATED 0 1 3
METTL9 WILD-TYPE 42 172 144
'METTL9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S9169.  Gene #886: 'METTL9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
METTL9 MUTATED 3 0 1
METTL9 WILD-TYPE 59 73 74
'METTL9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.92

Table S9170.  Gene #886: 'METTL9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
METTL9 MUTATED 0 1 2
METTL9 WILD-TYPE 70 119 98
'METTL9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S9171.  Gene #886: 'METTL9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
METTL9 MUTATED 1 0 0 1 0 1 0 0 0
METTL9 WILD-TYPE 40 26 30 28 39 68 20 14 22
'METTL9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S9172.  Gene #886: 'METTL9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
METTL9 MUTATED 1 1 2 0
METTL9 WILD-TYPE 99 71 70 121
'METTL9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S9173.  Gene #886: 'METTL9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
METTL9 MUTATED 1 1 2 0 0
METTL9 WILD-TYPE 58 74 72 119 38
'METTL9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.072 (Fisher's exact test), Q value = 0.29

Table S9174.  Gene #886: 'METTL9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
METTL9 MUTATED 0 3 1 0 0
METTL9 WILD-TYPE 51 73 60 71 95
'METTL9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.55

Table S9175.  Gene #886: 'METTL9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
METTL9 MUTATED 1 3 0 0 0 0 0 0 0
METTL9 WILD-TYPE 68 45 39 16 53 20 21 38 50
'CEL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0062 (Fisher's exact test), Q value = 0.074

Table S9176.  Gene #887: 'CEL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CEL MUTATED 1 0 7
CEL WILD-TYPE 41 173 140

Figure S2560.  Get High-res Image Gene #887: 'CEL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CEL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 0.28

Table S9177.  Gene #887: 'CEL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CEL MUTATED 3 0 5
CEL WILD-TYPE 59 73 70
'CEL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.91

Table S9178.  Gene #887: 'CEL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CEL MUTATED 2 2 4
CEL WILD-TYPE 68 118 96
'CEL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S9179.  Gene #887: 'CEL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CEL MUTATED 0 0 0 1 1 4 1 1 0
CEL WILD-TYPE 41 26 30 28 38 65 19 13 22
'CEL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00705 (Fisher's exact test), Q value = 0.079

Table S9180.  Gene #887: 'CEL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CEL MUTATED 0 5 3 1
CEL WILD-TYPE 100 67 69 120

Figure S2561.  Get High-res Image Gene #887: 'CEL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CEL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00023 (Fisher's exact test), Q value = 0.0098

Table S9181.  Gene #887: 'CEL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CEL MUTATED 0 0 8 1 0
CEL WILD-TYPE 59 75 66 118 38

Figure S2562.  Get High-res Image Gene #887: 'CEL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CEL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S9182.  Gene #887: 'CEL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CEL MUTATED 0 8 0 1 0
CEL WILD-TYPE 51 68 61 70 95

Figure S2563.  Get High-res Image Gene #887: 'CEL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CEL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S9183.  Gene #887: 'CEL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CEL MUTATED 3 0 0 5 0 0 0 0 1
CEL WILD-TYPE 66 48 39 11 53 20 21 38 49

Figure S2564.  Get High-res Image Gene #887: 'CEL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00344 (Fisher's exact test), Q value = 0.052

Table S9184.  Gene #887: 'CEL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CEL MUTATED 0 0 1 0 4 0
CEL WILD-TYPE 13 16 13 11 7 9

Figure S2565.  Get High-res Image Gene #887: 'CEL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S9185.  Gene #887: 'CEL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CEL MUTATED 0 0 0 2 1 1 1 0 0
CEL WILD-TYPE 11 7 7 7 7 6 10 9 5
'OR10J1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S9186.  Gene #888: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OR10J1 MUTATED 2 0 0 2 0
OR10J1 WILD-TYPE 30 18 46 25 23
'OR10J1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S9187.  Gene #888: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OR10J1 MUTATED 2 1 1
OR10J1 WILD-TYPE 41 66 35
'OR10J1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.54

Table S9188.  Gene #888: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR10J1 MUTATED 0 5 8
OR10J1 WILD-TYPE 42 168 139
'OR10J1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S9189.  Gene #888: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR10J1 MUTATED 2 3 4
OR10J1 WILD-TYPE 60 70 71
'OR10J1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S9190.  Gene #888: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR10J1 MUTATED 1 3 5
OR10J1 WILD-TYPE 69 117 95
'OR10J1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S9191.  Gene #888: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR10J1 MUTATED 0 0 0 2 0 5 1 1 0
OR10J1 WILD-TYPE 41 26 30 27 39 64 19 13 22
'OR10J1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S9192.  Gene #888: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR10J1 MUTATED 2 4 3 4
OR10J1 WILD-TYPE 98 68 69 117
'OR10J1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.35

Table S9193.  Gene #888: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR10J1 MUTATED 0 4 5 2 2
OR10J1 WILD-TYPE 59 71 69 117 36
'OR10J1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S9194.  Gene #888: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR10J1 MUTATED 2 5 1 3 1
OR10J1 WILD-TYPE 49 71 60 68 94
'OR10J1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.79

Table S9195.  Gene #888: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR10J1 MUTATED 2 3 1 1 1 2 1 0 1
OR10J1 WILD-TYPE 67 45 38 15 52 18 20 38 49
'OR10J1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S9196.  Gene #888: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR10J1 MUTATED 2 1 0 0 2 0
OR10J1 WILD-TYPE 11 15 14 11 9 9
'OR10J1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9197.  Gene #888: 'OR10J1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR10J1 MUTATED 1 0 0 1 1 0 1 1 0
OR10J1 WILD-TYPE 10 7 7 8 7 7 10 8 5
'PRKCD MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.25

Table S9198.  Gene #889: 'PRKCD MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PRKCD MUTATED 3 0 0 0 0
PRKCD WILD-TYPE 29 18 46 27 23
'PRKCD MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S9199.  Gene #889: 'PRKCD MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PRKCD MUTATED 2 0 1
PRKCD WILD-TYPE 41 67 35
'PRKCD MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S9200.  Gene #889: 'PRKCD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRKCD MUTATED 0 0 12
PRKCD WILD-TYPE 42 173 135

Figure S2566.  Get High-res Image Gene #889: 'PRKCD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PRKCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0539 (Fisher's exact test), Q value = 0.25

Table S9201.  Gene #889: 'PRKCD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRKCD MUTATED 4 0 5
PRKCD WILD-TYPE 58 73 70
'PRKCD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S9202.  Gene #889: 'PRKCD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRKCD MUTATED 1 3 7
PRKCD WILD-TYPE 69 117 93
'PRKCD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S9203.  Gene #889: 'PRKCD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRKCD MUTATED 1 0 1 2 1 3 3 0 0
PRKCD WILD-TYPE 40 26 29 27 38 66 17 14 22
'PRKCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.19

Table S9204.  Gene #889: 'PRKCD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRKCD MUTATED 0 4 5 4
PRKCD WILD-TYPE 100 68 67 117

Figure S2567.  Get High-res Image Gene #889: 'PRKCD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PRKCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00384 (Fisher's exact test), Q value = 0.055

Table S9205.  Gene #889: 'PRKCD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRKCD MUTATED 0 2 7 1 3
PRKCD WILD-TYPE 59 73 67 118 35

Figure S2568.  Get High-res Image Gene #889: 'PRKCD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PRKCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S9206.  Gene #889: 'PRKCD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRKCD MUTATED 0 8 1 1 3
PRKCD WILD-TYPE 51 68 60 70 92

Figure S2569.  Get High-res Image Gene #889: 'PRKCD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PRKCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.63

Table S9207.  Gene #889: 'PRKCD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRKCD MUTATED 4 3 0 1 2 0 0 3 0
PRKCD WILD-TYPE 65 45 39 15 51 20 21 35 50
'SMC1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.18

Table S9208.  Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SMC1B MUTATED 4 0 0 1 0
SMC1B WILD-TYPE 28 18 46 26 23

Figure S2570.  Get High-res Image Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SMC1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S9209.  Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SMC1B MUTATED 3 1 1
SMC1B WILD-TYPE 40 66 35
'SMC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S9210.  Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SMC1B MUTATED 0 3 16
SMC1B WILD-TYPE 42 170 131

Figure S2571.  Get High-res Image Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SMC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.15

Table S9211.  Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SMC1B MUTATED 8 1 6
SMC1B WILD-TYPE 54 72 69

Figure S2572.  Get High-res Image Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SMC1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S9212.  Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SMC1B MUTATED 2 9 7
SMC1B WILD-TYPE 68 111 93
'SMC1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.96

Table S9213.  Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SMC1B MUTATED 1 3 1 1 3 7 0 1 1
SMC1B WILD-TYPE 40 23 29 28 36 62 20 13 21
'SMC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 0.24

Table S9214.  Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SMC1B MUTATED 1 7 5 6
SMC1B WILD-TYPE 99 65 67 115

Figure S2573.  Get High-res Image Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SMC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0361 (Fisher's exact test), Q value = 0.2

Table S9215.  Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SMC1B MUTATED 4 1 8 3 3
SMC1B WILD-TYPE 55 74 66 116 35

Figure S2574.  Get High-res Image Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S9216.  Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SMC1B MUTATED 0 7 3 2 7
SMC1B WILD-TYPE 51 69 58 69 88
'SMC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.54

Table S9217.  Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SMC1B MUTATED 3 5 0 2 2 1 0 4 2
SMC1B WILD-TYPE 66 43 39 14 51 19 21 34 48
'SMC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 0.28

Table S9218.  Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SMC1B MUTATED 0 2 1 0 4 1
SMC1B WILD-TYPE 13 14 13 11 7 8
'SMC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S9219.  Gene #890: 'SMC1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SMC1B MUTATED 0 2 0 2 0 0 3 1 0
SMC1B WILD-TYPE 11 5 7 7 8 7 8 8 5
'AP1M1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S9220.  Gene #891: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AP1M1 MUTATED 0 3 6
AP1M1 WILD-TYPE 42 170 141
'AP1M1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.73

Table S9221.  Gene #891: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AP1M1 MUTATED 2 1 4
AP1M1 WILD-TYPE 60 72 71
'AP1M1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S9222.  Gene #891: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AP1M1 MUTATED 1 4 3
AP1M1 WILD-TYPE 69 116 97
'AP1M1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0654 (Fisher's exact test), Q value = 0.28

Table S9223.  Gene #891: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AP1M1 MUTATED 0 0 1 1 0 2 2 2 0
AP1M1 WILD-TYPE 41 26 29 28 39 67 18 12 22
'AP1M1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S9224.  Gene #891: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AP1M1 MUTATED 1 4 2 2
AP1M1 WILD-TYPE 99 68 70 119
'AP1M1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S9225.  Gene #891: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AP1M1 MUTATED 1 1 5 1 1
AP1M1 WILD-TYPE 58 74 69 118 37
'AP1M1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.2

Table S9226.  Gene #891: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AP1M1 MUTATED 1 6 0 1 1
AP1M1 WILD-TYPE 50 70 61 70 94

Figure S2575.  Get High-res Image Gene #891: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'AP1M1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S9227.  Gene #891: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AP1M1 MUTATED 1 2 2 1 1 1 0 1 0
AP1M1 WILD-TYPE 68 46 37 15 52 19 21 37 50
'AP1M1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S9228.  Gene #891: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AP1M1 MUTATED 1 0 0 1 1 0
AP1M1 WILD-TYPE 12 16 14 10 10 9
'AP1M1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S9229.  Gene #891: 'AP1M1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AP1M1 MUTATED 0 0 0 0 0 0 2 1 0
AP1M1 WILD-TYPE 11 7 7 9 8 7 9 8 5
'CCDC55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 0.16

Table S9230.  Gene #892: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCDC55 MUTATED 1 2 10
CCDC55 WILD-TYPE 41 171 137

Figure S2576.  Get High-res Image Gene #892: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.32

Table S9231.  Gene #892: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCDC55 MUTATED 6 1 4
CCDC55 WILD-TYPE 56 72 71
'CCDC55 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S9232.  Gene #892: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCDC55 MUTATED 0 3 5
CCDC55 WILD-TYPE 70 117 95
'CCDC55 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S9233.  Gene #892: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCDC55 MUTATED 1 0 0 2 0 4 0 1 0
CCDC55 WILD-TYPE 40 26 30 27 39 65 20 13 22
'CCDC55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S9234.  Gene #892: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCDC55 MUTATED 3 6 2 2
CCDC55 WILD-TYPE 97 66 70 119
'CCDC55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S9235.  Gene #892: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCDC55 MUTATED 2 4 5 1 1
CCDC55 WILD-TYPE 57 71 69 118 37
'CCDC55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.19

Table S9236.  Gene #892: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCDC55 MUTATED 1 7 2 0 2
CCDC55 WILD-TYPE 50 69 59 71 93

Figure S2577.  Get High-res Image Gene #892: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CCDC55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S9237.  Gene #892: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCDC55 MUTATED 3 2 1 3 0 1 0 1 1
CCDC55 WILD-TYPE 66 46 38 13 53 19 21 37 49
'CCDC55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S9238.  Gene #892: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CCDC55 MUTATED 0 1 1 0 1 0
CCDC55 WILD-TYPE 13 15 13 11 10 9
'CCDC55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S9239.  Gene #892: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CCDC55 MUTATED 0 1 0 1 1 0 0 0 0
CCDC55 WILD-TYPE 11 6 7 8 7 7 11 9 5
'MOV10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S9240.  Gene #893: 'MOV10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MOV10 MUTATED 2 1 0 0 0
MOV10 WILD-TYPE 30 17 46 27 23
'MOV10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S9241.  Gene #893: 'MOV10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MOV10 MUTATED 2 0 1
MOV10 WILD-TYPE 41 67 35
'MOV10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.53

Table S9242.  Gene #893: 'MOV10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MOV10 MUTATED 0 5 8
MOV10 WILD-TYPE 42 168 139
'MOV10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9243.  Gene #893: 'MOV10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MOV10 MUTATED 3 3 4
MOV10 WILD-TYPE 59 70 71
'MOV10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S9244.  Gene #893: 'MOV10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MOV10 MUTATED 2 5 3
MOV10 WILD-TYPE 68 115 97
'MOV10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 0.97

Table S9245.  Gene #893: 'MOV10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MOV10 MUTATED 1 0 1 2 2 2 2 0 0
MOV10 WILD-TYPE 40 26 29 27 37 67 18 14 22
'MOV10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S9246.  Gene #893: 'MOV10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MOV10 MUTATED 4 4 2 3
MOV10 WILD-TYPE 96 68 70 118
'MOV10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S9247.  Gene #893: 'MOV10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MOV10 MUTATED 2 5 3 1 2
MOV10 WILD-TYPE 57 70 71 118 36
'MOV10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00812 (Fisher's exact test), Q value = 0.085

Table S9248.  Gene #893: 'MOV10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MOV10 MUTATED 3 7 0 1 1
MOV10 WILD-TYPE 48 69 61 70 94

Figure S2578.  Get High-res Image Gene #893: 'MOV10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MOV10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.96

Table S9249.  Gene #893: 'MOV10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MOV10 MUTATED 5 2 1 0 2 1 0 1 0
MOV10 WILD-TYPE 64 46 38 16 51 19 21 37 50
'GRINA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.14

Table S9250.  Gene #894: 'GRINA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GRINA MUTATED 2 0 2
GRINA WILD-TYPE 40 173 145

Figure S2579.  Get High-res Image Gene #894: 'GRINA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GRINA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S9251.  Gene #894: 'GRINA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GRINA MUTATED 1 2 1
GRINA WILD-TYPE 61 71 74
'GRINA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9252.  Gene #894: 'GRINA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GRINA MUTATED 1 2 1
GRINA WILD-TYPE 69 118 99
'GRINA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S9253.  Gene #894: 'GRINA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GRINA MUTATED 0 0 0 1 1 1 0 1 0
GRINA WILD-TYPE 41 26 30 28 38 68 20 13 22
'GRINA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S9254.  Gene #894: 'GRINA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GRINA MUTATED 1 2 0 1
GRINA WILD-TYPE 99 70 72 120
'GRINA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S9255.  Gene #894: 'GRINA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GRINA MUTATED 0 1 2 1 0
GRINA WILD-TYPE 59 74 72 118 38
'GRINA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S9256.  Gene #894: 'GRINA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GRINA MUTATED 0 2 0 2 0
GRINA WILD-TYPE 51 74 61 69 95
'GRINA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S9257.  Gene #894: 'GRINA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GRINA MUTATED 2 0 0 1 0 0 0 0 1
GRINA WILD-TYPE 67 48 39 15 53 20 21 38 49
'CAPRIN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S9258.  Gene #895: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CAPRIN1 MUTATED 2 0 1 0 0
CAPRIN1 WILD-TYPE 30 18 45 27 23
'CAPRIN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S9259.  Gene #895: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CAPRIN1 MUTATED 2 1 0
CAPRIN1 WILD-TYPE 41 66 36
'CAPRIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S9260.  Gene #895: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CAPRIN1 MUTATED 1 3 7
CAPRIN1 WILD-TYPE 41 170 140
'CAPRIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S9261.  Gene #895: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CAPRIN1 MUTATED 0 3 5
CAPRIN1 WILD-TYPE 62 70 70
'CAPRIN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.76

Table S9262.  Gene #895: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CAPRIN1 MUTATED 1 6 3
CAPRIN1 WILD-TYPE 69 114 97
'CAPRIN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S9263.  Gene #895: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CAPRIN1 MUTATED 0 1 2 0 3 3 0 0 1
CAPRIN1 WILD-TYPE 41 25 28 29 36 66 20 14 21
'CAPRIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.74

Table S9264.  Gene #895: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CAPRIN1 MUTATED 1 4 2 4
CAPRIN1 WILD-TYPE 99 68 70 117
'CAPRIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S9265.  Gene #895: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CAPRIN1 MUTATED 1 2 3 2 3
CAPRIN1 WILD-TYPE 58 73 71 117 35
'CAPRIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S9266.  Gene #895: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CAPRIN1 MUTATED 1 2 1 1 6
CAPRIN1 WILD-TYPE 50 74 60 70 89
'CAPRIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00084 (Fisher's exact test), Q value = 0.022

Table S9267.  Gene #895: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CAPRIN1 MUTATED 2 0 0 2 1 0 0 6 0
CAPRIN1 WILD-TYPE 67 48 39 14 52 20 21 32 50

Figure S2580.  Get High-res Image Gene #895: 'CAPRIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OR7C1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S9268.  Gene #896: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OR7C1 MUTATED 3 0 0 1 2
OR7C1 WILD-TYPE 29 18 46 26 21
'OR7C1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.16

Table S9269.  Gene #896: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OR7C1 MUTATED 4 0 2
OR7C1 WILD-TYPE 39 67 34

Figure S2581.  Get High-res Image Gene #896: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'OR7C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S9270.  Gene #896: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR7C1 MUTATED 0 3 6
OR7C1 WILD-TYPE 42 170 141
'OR7C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S9271.  Gene #896: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR7C1 MUTATED 0 1 2
OR7C1 WILD-TYPE 62 72 73
'OR7C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S9272.  Gene #896: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR7C1 MUTATED 2 3 0
OR7C1 WILD-TYPE 68 117 100
'OR7C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S9273.  Gene #896: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR7C1 MUTATED 1 0 1 0 3 0 0 0 0
OR7C1 WILD-TYPE 40 26 29 29 36 69 20 14 22
'OR7C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S9274.  Gene #896: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR7C1 MUTATED 1 1 1 6
OR7C1 WILD-TYPE 99 71 71 115
'OR7C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S9275.  Gene #896: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR7C1 MUTATED 1 0 2 2 4
OR7C1 WILD-TYPE 58 75 72 117 34

Figure S2582.  Get High-res Image Gene #896: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR7C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S9276.  Gene #896: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR7C1 MUTATED 0 1 1 2 5
OR7C1 WILD-TYPE 51 75 60 69 90
'OR7C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0306 (Fisher's exact test), Q value = 0.18

Table S9277.  Gene #896: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR7C1 MUTATED 0 2 0 0 0 1 0 4 2
OR7C1 WILD-TYPE 69 46 39 16 53 19 21 34 48

Figure S2583.  Get High-res Image Gene #896: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CBLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.19

Table S9278.  Gene #897: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CBLL1 MUTATED 0 0 5
CBLL1 WILD-TYPE 42 173 142

Figure S2584.  Get High-res Image Gene #897: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CBLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0815 (Fisher's exact test), Q value = 0.31

Table S9279.  Gene #897: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CBLL1 MUTATED 1 0 4
CBLL1 WILD-TYPE 61 73 71
'CBLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9280.  Gene #897: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CBLL1 MUTATED 1 2 1
CBLL1 WILD-TYPE 69 118 99
'CBLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0461 (Fisher's exact test), Q value = 0.23

Table S9281.  Gene #897: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CBLL1 MUTATED 0 0 0 0 0 1 2 1 0
CBLL1 WILD-TYPE 41 26 30 29 39 68 18 13 22

Figure S2585.  Get High-res Image Gene #897: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CBLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S9282.  Gene #897: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CBLL1 MUTATED 0 3 2 0
CBLL1 WILD-TYPE 100 69 70 121

Figure S2586.  Get High-res Image Gene #897: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CBLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S9283.  Gene #897: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CBLL1 MUTATED 1 0 4 0 0
CBLL1 WILD-TYPE 58 75 70 119 38

Figure S2587.  Get High-res Image Gene #897: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CBLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.37

Table S9284.  Gene #897: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CBLL1 MUTATED 1 3 1 0 0
CBLL1 WILD-TYPE 50 73 60 71 95
'CBLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S9285.  Gene #897: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CBLL1 MUTATED 0 1 0 2 1 1 0 0 0
CBLL1 WILD-TYPE 69 47 39 14 52 19 21 38 50

Figure S2588.  Get High-res Image Gene #897: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SNAPC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 0.24

Table S9286.  Gene #898: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SNAPC1 MUTATED 1 0 0 3 0
SNAPC1 WILD-TYPE 31 18 46 24 23
'SNAPC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.094

Table S9287.  Gene #898: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SNAPC1 MUTATED 4 0 0
SNAPC1 WILD-TYPE 39 67 36

Figure S2589.  Get High-res Image Gene #898: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SNAPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S9288.  Gene #898: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SNAPC1 MUTATED 1 0 6
SNAPC1 WILD-TYPE 41 173 141

Figure S2590.  Get High-res Image Gene #898: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SNAPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S9289.  Gene #898: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SNAPC1 MUTATED 1 0 2
SNAPC1 WILD-TYPE 61 73 73
'SNAPC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9290.  Gene #898: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SNAPC1 MUTATED 2 3 2
SNAPC1 WILD-TYPE 68 117 98
'SNAPC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.99

Table S9291.  Gene #898: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SNAPC1 MUTATED 1 1 0 2 1 1 1 0 0
SNAPC1 WILD-TYPE 40 25 30 27 38 68 19 14 22
'SNAPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S9292.  Gene #898: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SNAPC1 MUTATED 0 2 2 3
SNAPC1 WILD-TYPE 100 70 70 118
'SNAPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00102 (Fisher's exact test), Q value = 0.025

Table S9293.  Gene #898: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SNAPC1 MUTATED 1 0 2 0 4
SNAPC1 WILD-TYPE 58 75 72 119 34

Figure S2591.  Get High-res Image Gene #898: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S9294.  Gene #898: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SNAPC1 MUTATED 0 2 1 0 3
SNAPC1 WILD-TYPE 51 74 60 71 92
'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00355 (Fisher's exact test), Q value = 0.053

Table S9295.  Gene #898: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SNAPC1 MUTATED 0 1 0 2 0 0 0 3 0
SNAPC1 WILD-TYPE 69 47 39 14 53 20 21 35 50

Figure S2592.  Get High-res Image Gene #898: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CETN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.1

Table S9296.  Gene #899: 'CETN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CETN3 MUTATED 0 0 6
CETN3 WILD-TYPE 42 173 141

Figure S2593.  Get High-res Image Gene #899: 'CETN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CETN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0802 (Fisher's exact test), Q value = 0.31

Table S9297.  Gene #899: 'CETN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CETN3 MUTATED 4 0 2
CETN3 WILD-TYPE 58 73 73
'CETN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00175 (Fisher's exact test), Q value = 0.035

Table S9298.  Gene #899: 'CETN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CETN3 MUTATED 0 0 6
CETN3 WILD-TYPE 70 120 94

Figure S2594.  Get High-res Image Gene #899: 'CETN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CETN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.85

Table S9299.  Gene #899: 'CETN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CETN3 MUTATED 1 0 0 0 0 4 1 0 0
CETN3 WILD-TYPE 40 26 30 29 39 65 19 14 22
'CETN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0044 (Fisher's exact test), Q value = 0.061

Table S9300.  Gene #899: 'CETN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CETN3 MUTATED 0 2 4 0
CETN3 WILD-TYPE 100 70 68 121

Figure S2595.  Get High-res Image Gene #899: 'CETN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CETN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00353 (Fisher's exact test), Q value = 0.053

Table S9301.  Gene #899: 'CETN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CETN3 MUTATED 1 0 5 0 0
CETN3 WILD-TYPE 58 75 69 119 38

Figure S2596.  Get High-res Image Gene #899: 'CETN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CETN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0054 (Fisher's exact test), Q value = 0.069

Table S9302.  Gene #899: 'CETN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CETN3 MUTATED 0 5 1 0 0
CETN3 WILD-TYPE 51 71 60 71 95

Figure S2597.  Get High-res Image Gene #899: 'CETN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CETN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.55

Table S9303.  Gene #899: 'CETN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CETN3 MUTATED 3 2 0 1 0 0 0 0 0
CETN3 WILD-TYPE 66 46 39 15 53 20 21 38 50
'CXXC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S9304.  Gene #900: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CXXC5 MUTATED 1 1 4
CXXC5 WILD-TYPE 41 172 143
'CXXC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.081 (Fisher's exact test), Q value = 0.31

Table S9305.  Gene #900: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CXXC5 MUTATED 1 0 4
CXXC5 WILD-TYPE 61 73 71
'CXXC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S9306.  Gene #900: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CXXC5 MUTATED 0 3 2
CXXC5 WILD-TYPE 70 117 98
'CXXC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S9307.  Gene #900: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CXXC5 MUTATED 0 1 0 2 0 2 0 0 0
CXXC5 WILD-TYPE 41 25 30 27 39 67 20 14 22
'CXXC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0941 (Fisher's exact test), Q value = 0.33

Table S9308.  Gene #900: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CXXC5 MUTATED 0 3 2 1
CXXC5 WILD-TYPE 100 69 70 120
'CXXC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S9309.  Gene #900: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CXXC5 MUTATED 1 1 3 1 0
CXXC5 WILD-TYPE 58 74 71 118 38
'CXXC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0615 (Fisher's exact test), Q value = 0.27

Table S9310.  Gene #900: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CXXC5 MUTATED 1 4 0 1 0
CXXC5 WILD-TYPE 50 72 61 70 95
'CXXC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S9311.  Gene #900: 'CXXC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CXXC5 MUTATED 0 3 0 1 1 0 0 0 1
CXXC5 WILD-TYPE 69 45 39 15 52 20 21 38 49
'GMNN MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9312.  Gene #901: 'GMNN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GMNN MUTATED 0 2 1
GMNN WILD-TYPE 42 171 146
'GMNN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S9313.  Gene #901: 'GMNN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GMNN MUTATED 1 2 0
GMNN WILD-TYPE 69 118 100
'GMNN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S9314.  Gene #901: 'GMNN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GMNN MUTATED 0 0 1 1 0 0 0 0 1
GMNN WILD-TYPE 41 26 29 28 39 69 20 14 21
'GMNN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9315.  Gene #901: 'GMNN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GMNN MUTATED 1 0 1 1
GMNN WILD-TYPE 99 72 71 120
'GMNN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S9316.  Gene #901: 'GMNN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GMNN MUTATED 0 2 0 1 0
GMNN WILD-TYPE 59 73 74 118 38
'GMNN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0903 (Fisher's exact test), Q value = 0.33

Table S9317.  Gene #901: 'GMNN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GMNN MUTATED 2 0 0 0 1
GMNN WILD-TYPE 49 76 61 71 94
'GMNN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.58

Table S9318.  Gene #901: 'GMNN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GMNN MUTATED 0 0 1 0 1 1 0 0 0
GMNN WILD-TYPE 69 48 38 16 52 19 21 38 50
'POLD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00342 (Fisher's exact test), Q value = 0.052

Table S9319.  Gene #902: 'POLD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
POLD3 MUTATED 0 1 10
POLD3 WILD-TYPE 42 172 137

Figure S2598.  Get High-res Image Gene #902: 'POLD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'POLD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0398 (Fisher's exact test), Q value = 0.21

Table S9320.  Gene #902: 'POLD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
POLD3 MUTATED 5 0 4
POLD3 WILD-TYPE 57 73 71

Figure S2599.  Get High-res Image Gene #902: 'POLD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'POLD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 0.3

Table S9321.  Gene #902: 'POLD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
POLD3 MUTATED 1 2 7
POLD3 WILD-TYPE 69 118 93
'POLD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0373 (Fisher's exact test), Q value = 0.21

Table S9322.  Gene #902: 'POLD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
POLD3 MUTATED 0 0 0 2 0 7 0 1 0
POLD3 WILD-TYPE 41 26 30 27 39 62 20 13 22

Figure S2600.  Get High-res Image Gene #902: 'POLD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'POLD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0454 (Fisher's exact test), Q value = 0.23

Table S9323.  Gene #902: 'POLD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
POLD3 MUTATED 1 6 2 2
POLD3 WILD-TYPE 99 66 70 119

Figure S2601.  Get High-res Image Gene #902: 'POLD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'POLD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00987 (Fisher's exact test), Q value = 0.094

Table S9324.  Gene #902: 'POLD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
POLD3 MUTATED 0 2 7 1 1
POLD3 WILD-TYPE 59 73 67 118 37

Figure S2602.  Get High-res Image Gene #902: 'POLD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'POLD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S9325.  Gene #902: 'POLD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
POLD3 MUTATED 0 6 1 1 3
POLD3 WILD-TYPE 51 70 60 70 92
'POLD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0663 (Fisher's exact test), Q value = 0.28

Table S9326.  Gene #902: 'POLD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
POLD3 MUTATED 5 0 0 2 1 1 1 0 1
POLD3 WILD-TYPE 64 48 39 14 52 19 20 38 49
'POLD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S9327.  Gene #902: 'POLD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
POLD3 MUTATED 0 0 2 0 1 0
POLD3 WILD-TYPE 13 16 12 11 10 9
'POLD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 0.99

Table S9328.  Gene #902: 'POLD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
POLD3 MUTATED 0 0 0 0 1 1 1 0 0
POLD3 WILD-TYPE 11 7 7 9 7 6 10 9 5
'FAM155B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S9329.  Gene #903: 'FAM155B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM155B MUTATED 1 3 3
FAM155B WILD-TYPE 41 170 144
'FAM155B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S9330.  Gene #903: 'FAM155B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM155B MUTATED 3 1 2
FAM155B WILD-TYPE 59 72 73
'FAM155B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S9331.  Gene #903: 'FAM155B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM155B MUTATED 2 2 2
FAM155B WILD-TYPE 68 118 98
'FAM155B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S9332.  Gene #903: 'FAM155B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM155B MUTATED 0 1 1 0 1 1 1 1 0
FAM155B WILD-TYPE 41 25 29 29 38 68 19 13 22
'FAM155B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S9333.  Gene #903: 'FAM155B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM155B MUTATED 1 4 1 2
FAM155B WILD-TYPE 99 68 71 119
'FAM155B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.95

Table S9334.  Gene #903: 'FAM155B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM155B MUTATED 2 2 2 1 1
FAM155B WILD-TYPE 57 73 72 118 37
'FAM155B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S9335.  Gene #903: 'FAM155B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM155B MUTATED 1 2 2 1 2
FAM155B WILD-TYPE 50 74 59 70 93
'FAM155B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S9336.  Gene #903: 'FAM155B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM155B MUTATED 0 1 1 2 1 1 0 1 1
FAM155B WILD-TYPE 69 47 38 14 52 19 21 37 49
'CTTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 0.27

Table S9337.  Gene #904: 'CTTN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CTTN MUTATED 0 0 4
CTTN WILD-TYPE 42 173 143
'CTTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S9338.  Gene #904: 'CTTN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CTTN MUTATED 2 0 2
CTTN WILD-TYPE 60 73 73
'CTTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.14

Table S9339.  Gene #904: 'CTTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CTTN MUTATED 0 3 1 0
CTTN WILD-TYPE 100 69 71 121

Figure S2603.  Get High-res Image Gene #904: 'CTTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0848 (Fisher's exact test), Q value = 0.32

Table S9340.  Gene #904: 'CTTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CTTN MUTATED 0 1 3 0 0
CTTN WILD-TYPE 59 74 71 119 38
'CTTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S9341.  Gene #904: 'CTTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CTTN MUTATED 0 3 0 0 1
CTTN WILD-TYPE 51 73 61 71 94
'CTTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S9342.  Gene #904: 'CTTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CTTN MUTATED 1 1 0 1 0 0 0 0 1
CTTN WILD-TYPE 68 47 39 15 53 20 21 38 49
'PIGC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S9343.  Gene #905: 'PIGC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PIGC MUTATED 2 1 1
PIGC WILD-TYPE 40 172 146
'PIGC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9344.  Gene #905: 'PIGC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PIGC MUTATED 1 1 2
PIGC WILD-TYPE 61 72 73
'PIGC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S9345.  Gene #905: 'PIGC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PIGC MUTATED 0 3 1
PIGC WILD-TYPE 70 117 99
'PIGC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00916 (Fisher's exact test), Q value = 0.09

Table S9346.  Gene #905: 'PIGC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PIGC MUTATED 0 0 0 1 0 0 2 1 0
PIGC WILD-TYPE 41 26 30 28 39 69 18 13 22

Figure S2604.  Get High-res Image Gene #905: 'PIGC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PIGC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S9347.  Gene #905: 'PIGC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PIGC MUTATED 1 2 1 0
PIGC WILD-TYPE 99 70 71 121
'PIGC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S9348.  Gene #905: 'PIGC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PIGC MUTATED 1 1 2 0 0
PIGC WILD-TYPE 58 74 72 119 38
'PIGC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.28

Table S9349.  Gene #905: 'PIGC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PIGC MUTATED 2 2 0 0 0
PIGC WILD-TYPE 49 74 61 71 95
'PIGC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S9350.  Gene #905: 'PIGC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PIGC MUTATED 0 1 1 1 1 0 0 0 0
PIGC WILD-TYPE 69 47 38 15 52 20 21 38 50
'CSGALNACT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.54

Table S9351.  Gene #906: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CSGALNACT1 MUTATED 2 2 4
CSGALNACT1 WILD-TYPE 40 171 143
'CSGALNACT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.77

Table S9352.  Gene #906: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CSGALNACT1 MUTATED 3 1 4
CSGALNACT1 WILD-TYPE 59 72 71
'CSGALNACT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S9353.  Gene #906: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CSGALNACT1 MUTATED 0 2 5
CSGALNACT1 WILD-TYPE 70 118 95
'CSGALNACT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S9354.  Gene #906: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CSGALNACT1 MUTATED 1 1 0 0 1 3 0 1 0
CSGALNACT1 WILD-TYPE 40 25 30 29 38 66 20 13 22
'CSGALNACT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 0.24

Table S9355.  Gene #906: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CSGALNACT1 MUTATED 2 2 4 0
CSGALNACT1 WILD-TYPE 98 70 68 121

Figure S2605.  Get High-res Image Gene #906: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CSGALNACT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0618 (Fisher's exact test), Q value = 0.27

Table S9356.  Gene #906: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CSGALNACT1 MUTATED 3 2 3 0 0
CSGALNACT1 WILD-TYPE 56 73 71 119 38
'CSGALNACT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 0.21

Table S9357.  Gene #906: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CSGALNACT1 MUTATED 2 3 3 0 0
CSGALNACT1 WILD-TYPE 49 73 58 71 95

Figure S2606.  Get High-res Image Gene #906: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CSGALNACT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S9358.  Gene #906: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CSGALNACT1 MUTATED 4 2 1 1 0 0 0 0 0
CSGALNACT1 WILD-TYPE 65 46 38 15 53 20 21 38 50
'CACHD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0021 (Fisher's exact test), Q value = 0.039

Table S9359.  Gene #907: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CACHD1 MUTATED 6 0 0 3 0
CACHD1 WILD-TYPE 26 18 46 24 23

Figure S2607.  Get High-res Image Gene #907: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CACHD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0532 (Fisher's exact test), Q value = 0.25

Table S9360.  Gene #907: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CACHD1 MUTATED 6 2 1
CACHD1 WILD-TYPE 37 65 35
'CACHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S9361.  Gene #907: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CACHD1 MUTATED 1 5 15
CACHD1 WILD-TYPE 41 168 132

Figure S2608.  Get High-res Image Gene #907: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CACHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S9362.  Gene #907: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CACHD1 MUTATED 6 3 3
CACHD1 WILD-TYPE 56 70 72
'CACHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 0.23

Table S9363.  Gene #907: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CACHD1 MUTATED 1 5 10
CACHD1 WILD-TYPE 69 115 90

Figure S2609.  Get High-res Image Gene #907: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CACHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S9364.  Gene #907: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CACHD1 MUTATED 0 0 2 2 1 8 2 1 0
CACHD1 WILD-TYPE 41 26 28 27 38 61 18 13 22
'CACHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.988 (Fisher's exact test), Q value = 1

Table S9365.  Gene #907: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CACHD1 MUTATED 5 4 4 8
CACHD1 WILD-TYPE 95 68 68 113
'CACHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0393 (Fisher's exact test), Q value = 0.21

Table S9366.  Gene #907: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CACHD1 MUTATED 2 4 6 3 6
CACHD1 WILD-TYPE 57 71 68 116 32

Figure S2610.  Get High-res Image Gene #907: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CACHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S9367.  Gene #907: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CACHD1 MUTATED 3 7 1 1 7
CACHD1 WILD-TYPE 48 69 60 70 88
'CACHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S9368.  Gene #907: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CACHD1 MUTATED 6 3 1 0 2 1 0 5 1
CACHD1 WILD-TYPE 63 45 38 16 51 19 21 33 49
'CACHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S9369.  Gene #907: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CACHD1 MUTATED 0 0 1 0 2 0
CACHD1 WILD-TYPE 13 16 13 11 9 9
'CACHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.99

Table S9370.  Gene #907: 'CACHD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CACHD1 MUTATED 0 0 0 0 1 1 1 0 0
CACHD1 WILD-TYPE 11 7 7 9 7 6 10 9 5
'DBN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S9371.  Gene #908: 'DBN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DBN1 MUTATED 2 3 4
DBN1 WILD-TYPE 40 170 143
'DBN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.91

Table S9372.  Gene #908: 'DBN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DBN1 MUTATED 1 3 4
DBN1 WILD-TYPE 61 70 71
'DBN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.66

Table S9373.  Gene #908: 'DBN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DBN1 MUTATED 1 2 5
DBN1 WILD-TYPE 69 118 95
'DBN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S9374.  Gene #908: 'DBN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DBN1 MUTATED 1 0 0 1 1 3 0 1 1
DBN1 WILD-TYPE 40 26 30 28 38 66 20 13 21
'DBN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.53

Table S9375.  Gene #908: 'DBN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DBN1 MUTATED 2 4 2 1
DBN1 WILD-TYPE 98 68 70 120
'DBN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0228 (Fisher's exact test), Q value = 0.16

Table S9376.  Gene #908: 'DBN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DBN1 MUTATED 2 1 5 0 1
DBN1 WILD-TYPE 57 74 69 119 37

Figure S2611.  Get High-res Image Gene #908: 'DBN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DBN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.18

Table S9377.  Gene #908: 'DBN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DBN1 MUTATED 1 6 1 0 1
DBN1 WILD-TYPE 50 70 60 71 94

Figure S2612.  Get High-res Image Gene #908: 'DBN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DBN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S9378.  Gene #908: 'DBN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DBN1 MUTATED 2 2 2 2 0 0 0 1 0
DBN1 WILD-TYPE 67 46 37 14 53 20 21 37 50
'DBN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S9379.  Gene #908: 'DBN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DBN1 MUTATED 1 1 0 1 1 0
DBN1 WILD-TYPE 12 15 14 10 10 9
'DBN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.89

Table S9380.  Gene #908: 'DBN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DBN1 MUTATED 1 0 0 1 0 0 0 2 0
DBN1 WILD-TYPE 10 7 7 8 8 7 11 7 5
'CRTC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00744 (Fisher's exact test), Q value = 0.081

Table S9381.  Gene #909: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CRTC1 MUTATED 0 2 11
CRTC1 WILD-TYPE 42 171 136

Figure S2613.  Get High-res Image Gene #909: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CRTC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.33

Table S9382.  Gene #909: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CRTC1 MUTATED 4 1 7
CRTC1 WILD-TYPE 58 72 68
'CRTC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S9383.  Gene #909: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CRTC1 MUTATED 1 3 7
CRTC1 WILD-TYPE 69 117 93
'CRTC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S9384.  Gene #909: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CRTC1 MUTATED 0 0 0 2 1 6 2 0 0
CRTC1 WILD-TYPE 41 26 30 27 38 63 18 14 22
'CRTC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00369 (Fisher's exact test), Q value = 0.054

Table S9385.  Gene #909: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CRTC1 MUTATED 1 7 4 1
CRTC1 WILD-TYPE 99 65 68 120

Figure S2614.  Get High-res Image Gene #909: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CRTC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S9386.  Gene #909: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CRTC1 MUTATED 0 2 10 1 0
CRTC1 WILD-TYPE 59 73 64 118 38

Figure S2615.  Get High-res Image Gene #909: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CRTC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00104 (Fisher's exact test), Q value = 0.025

Table S9387.  Gene #909: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CRTC1 MUTATED 0 9 2 0 2
CRTC1 WILD-TYPE 51 67 59 71 93

Figure S2616.  Get High-res Image Gene #909: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CRTC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S9388.  Gene #909: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CRTC1 MUTATED 3 2 1 2 3 0 0 1 1
CRTC1 WILD-TYPE 66 46 38 14 50 20 21 37 49
'CRTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S9389.  Gene #909: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CRTC1 MUTATED 0 0 2 0 1 0
CRTC1 WILD-TYPE 13 16 12 11 10 9
'CRTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S9390.  Gene #909: 'CRTC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CRTC1 MUTATED 0 0 0 1 1 0 1 0 0
CRTC1 WILD-TYPE 11 7 7 8 7 7 10 9 5
'RRAGD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S9391.  Gene #910: 'RRAGD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RRAGD MUTATED 1 4 2
RRAGD WILD-TYPE 41 169 145
'RRAGD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S9392.  Gene #910: 'RRAGD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RRAGD MUTATED 1 2 3
RRAGD WILD-TYPE 61 71 72
'RRAGD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S9393.  Gene #910: 'RRAGD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RRAGD MUTATED 0 5 1
RRAGD WILD-TYPE 70 115 99
'RRAGD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 0.23

Table S9394.  Gene #910: 'RRAGD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RRAGD MUTATED 0 0 1 2 0 1 0 2 0
RRAGD WILD-TYPE 41 26 29 27 39 68 20 12 22

Figure S2617.  Get High-res Image Gene #910: 'RRAGD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'RRAGD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.2

Table S9395.  Gene #910: 'RRAGD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RRAGD MUTATED 3 3 0 0
RRAGD WILD-TYPE 97 69 72 121

Figure S2618.  Get High-res Image Gene #910: 'RRAGD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RRAGD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.056 (Fisher's exact test), Q value = 0.25

Table S9396.  Gene #910: 'RRAGD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RRAGD MUTATED 1 4 1 0 0
RRAGD WILD-TYPE 58 71 73 119 38
'RRAGD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S9397.  Gene #910: 'RRAGD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RRAGD MUTATED 3 1 1 0 2
RRAGD WILD-TYPE 48 75 60 71 93
'RRAGD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S9398.  Gene #910: 'RRAGD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RRAGD MUTATED 2 1 1 0 0 1 0 0 2
RRAGD WILD-TYPE 67 47 38 16 53 19 21 38 48
'CTNNA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.19

Table S9399.  Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CTNNA3 MUTATED 3 0 0 4 1
CTNNA3 WILD-TYPE 29 18 46 23 22

Figure S2619.  Get High-res Image Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CTNNA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S9400.  Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CTNNA3 MUTATED 5 2 1
CTNNA3 WILD-TYPE 38 65 35
'CTNNA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0065

Table S9401.  Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CTNNA3 MUTATED 1 4 21
CTNNA3 WILD-TYPE 41 169 126

Figure S2620.  Get High-res Image Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTNNA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S9402.  Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CTNNA3 MUTATED 4 3 10
CTNNA3 WILD-TYPE 58 70 65
'CTNNA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S9403.  Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CTNNA3 MUTATED 4 8 9
CTNNA3 WILD-TYPE 66 112 91
'CTNNA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0251 (Fisher's exact test), Q value = 0.16

Table S9404.  Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CTNNA3 MUTATED 0 0 3 0 2 10 2 2 2
CTNNA3 WILD-TYPE 41 26 27 29 37 59 18 12 20

Figure S2621.  Get High-res Image Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CTNNA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0334 (Fisher's exact test), Q value = 0.19

Table S9405.  Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CTNNA3 MUTATED 2 9 7 8
CTNNA3 WILD-TYPE 98 63 65 113

Figure S2622.  Get High-res Image Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTNNA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0026 (Fisher's exact test), Q value = 0.043

Table S9406.  Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CTNNA3 MUTATED 2 4 12 3 5
CTNNA3 WILD-TYPE 57 71 62 116 33

Figure S2623.  Get High-res Image Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTNNA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0688 (Fisher's exact test), Q value = 0.28

Table S9407.  Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CTNNA3 MUTATED 3 10 3 1 8
CTNNA3 WILD-TYPE 48 66 58 70 87
'CTNNA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0573 (Fisher's exact test), Q value = 0.26

Table S9408.  Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CTNNA3 MUTATED 4 3 1 5 4 2 0 4 2
CTNNA3 WILD-TYPE 65 45 38 11 49 18 21 34 48
'CTNNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0463 (Fisher's exact test), Q value = 0.23

Table S9409.  Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CTNNA3 MUTATED 0 0 1 0 3 1
CTNNA3 WILD-TYPE 13 16 13 11 8 8

Figure S2624.  Get High-res Image Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CTNNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S9410.  Gene #911: 'CTNNA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CTNNA3 MUTATED 0 0 0 1 2 0 1 1 0
CTNNA3 WILD-TYPE 11 7 7 8 6 7 10 8 5
'EML4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0544 (Fisher's exact test), Q value = 0.25

Table S9411.  Gene #912: 'EML4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EML4 MUTATED 3 0 0 0 0
EML4 WILD-TYPE 29 18 46 27 23
'EML4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S9412.  Gene #912: 'EML4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EML4 MUTATED 2 0 1
EML4 WILD-TYPE 41 67 35
'EML4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S9413.  Gene #912: 'EML4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EML4 MUTATED 1 3 6
EML4 WILD-TYPE 41 170 141
'EML4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S9414.  Gene #912: 'EML4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EML4 MUTATED 2 3 2
EML4 WILD-TYPE 60 70 73
'EML4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S9415.  Gene #912: 'EML4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EML4 MUTATED 1 2 4
EML4 WILD-TYPE 69 118 96
'EML4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S9416.  Gene #912: 'EML4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EML4 MUTATED 2 0 0 1 1 3 0 0 0
EML4 WILD-TYPE 39 26 30 28 38 66 20 14 22
'EML4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S9417.  Gene #912: 'EML4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EML4 MUTATED 3 3 1 3
EML4 WILD-TYPE 97 69 71 118
'EML4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S9418.  Gene #912: 'EML4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EML4 MUTATED 2 4 1 1 2
EML4 WILD-TYPE 57 71 73 118 36
'EML4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S9419.  Gene #912: 'EML4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EML4 MUTATED 2 2 2 1 3
EML4 WILD-TYPE 49 74 59 70 92
'EML4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S9420.  Gene #912: 'EML4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EML4 MUTATED 2 2 0 1 1 1 0 2 1
EML4 WILD-TYPE 67 46 39 15 52 19 21 36 49
'PLA2G15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S9421.  Gene #913: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PLA2G15 MUTATED 1 1 3
PLA2G15 WILD-TYPE 41 172 144
'PLA2G15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 0.29

Table S9422.  Gene #913: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PLA2G15 MUTATED 3 1 0
PLA2G15 WILD-TYPE 59 72 75
'PLA2G15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S9423.  Gene #913: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PLA2G15 MUTATED 0 2 3
PLA2G15 WILD-TYPE 70 118 97
'PLA2G15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.993 (Fisher's exact test), Q value = 1

Table S9424.  Gene #913: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PLA2G15 MUTATED 1 0 0 1 1 2 0 0 0
PLA2G15 WILD-TYPE 40 26 30 28 38 67 20 14 22
'PLA2G15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S9425.  Gene #913: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PLA2G15 MUTATED 1 1 2 1
PLA2G15 WILD-TYPE 99 71 70 120
'PLA2G15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.53

Table S9426.  Gene #913: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PLA2G15 MUTATED 1 1 2 0 1
PLA2G15 WILD-TYPE 58 74 72 119 37
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S9427.  Gene #913: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PLA2G15 MUTATED 0 2 1 2 0
PLA2G15 WILD-TYPE 51 74 60 69 95
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S9428.  Gene #913: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PLA2G15 MUTATED 1 2 0 1 1 0 0 0 0
PLA2G15 WILD-TYPE 68 46 39 15 52 20 21 38 50
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S9429.  Gene #913: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PLA2G15 MUTATED 0 1 0 0 1 1
PLA2G15 WILD-TYPE 13 15 14 11 10 8
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S9430.  Gene #913: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PLA2G15 MUTATED 0 0 0 0 0 1 1 1 0
PLA2G15 WILD-TYPE 11 7 7 9 8 6 10 8 5
'USP29 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00873 (Fisher's exact test), Q value = 0.088

Table S9431.  Gene #914: 'USP29 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
USP29 MUTATED 5 0 0 2 0
USP29 WILD-TYPE 27 18 46 25 23

Figure S2625.  Get High-res Image Gene #914: 'USP29 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'USP29 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0432 (Fisher's exact test), Q value = 0.22

Table S9432.  Gene #914: 'USP29 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
USP29 MUTATED 5 1 1
USP29 WILD-TYPE 38 66 35

Figure S2626.  Get High-res Image Gene #914: 'USP29 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'USP29 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0053

Table S9433.  Gene #914: 'USP29 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
USP29 MUTATED 1 1 16
USP29 WILD-TYPE 41 172 131

Figure S2627.  Get High-res Image Gene #914: 'USP29 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP29 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0937 (Fisher's exact test), Q value = 0.33

Table S9434.  Gene #914: 'USP29 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
USP29 MUTATED 3 1 7
USP29 WILD-TYPE 59 72 68
'USP29 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S9435.  Gene #914: 'USP29 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
USP29 MUTATED 3 3 7
USP29 WILD-TYPE 67 117 93
'USP29 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S9436.  Gene #914: 'USP29 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
USP29 MUTATED 1 0 2 1 2 6 1 0 0
USP29 WILD-TYPE 40 26 28 28 37 63 19 14 22
'USP29 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S9437.  Gene #914: 'USP29 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
USP29 MUTATED 2 5 4 7
USP29 WILD-TYPE 98 67 68 114
'USP29 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0199 (Fisher's exact test), Q value = 0.14

Table S9438.  Gene #914: 'USP29 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
USP29 MUTATED 0 4 7 3 4
USP29 WILD-TYPE 59 71 67 116 34

Figure S2628.  Get High-res Image Gene #914: 'USP29 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP29 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 0.32

Table S9439.  Gene #914: 'USP29 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
USP29 MUTATED 1 7 1 1 7
USP29 WILD-TYPE 50 69 60 70 88
'USP29 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S9440.  Gene #914: 'USP29 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
USP29 MUTATED 2 3 1 1 3 1 1 4 1
USP29 WILD-TYPE 67 45 38 15 50 19 20 34 49
'USP29 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S9441.  Gene #914: 'USP29 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
USP29 MUTATED 0 1 0 0 2 0
USP29 WILD-TYPE 13 15 14 11 9 9
'USP29 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S9442.  Gene #914: 'USP29 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
USP29 MUTATED 0 0 0 0 1 0 2 0 0
USP29 WILD-TYPE 11 7 7 9 7 7 9 9 5
'BAIAP2L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.011

Table S9443.  Gene #915: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BAIAP2L1 MUTATED 1 0 11
BAIAP2L1 WILD-TYPE 41 173 136

Figure S2629.  Get High-res Image Gene #915: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BAIAP2L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.2

Table S9444.  Gene #915: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BAIAP2L1 MUTATED 3 0 6
BAIAP2L1 WILD-TYPE 59 73 69

Figure S2630.  Get High-res Image Gene #915: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BAIAP2L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.91

Table S9445.  Gene #915: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BAIAP2L1 MUTATED 2 2 4
BAIAP2L1 WILD-TYPE 68 118 96
'BAIAP2L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S9446.  Gene #915: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BAIAP2L1 MUTATED 1 0 1 1 0 4 1 0 0
BAIAP2L1 WILD-TYPE 40 26 29 28 39 65 19 14 22
'BAIAP2L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.16

Table S9447.  Gene #915: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BAIAP2L1 MUTATED 0 5 4 3
BAIAP2L1 WILD-TYPE 100 67 68 118

Figure S2631.  Get High-res Image Gene #915: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BAIAP2L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0053

Table S9448.  Gene #915: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BAIAP2L1 MUTATED 0 1 8 0 3
BAIAP2L1 WILD-TYPE 59 74 66 119 35

Figure S2632.  Get High-res Image Gene #915: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BAIAP2L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S9449.  Gene #915: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BAIAP2L1 MUTATED 0 7 1 0 4
BAIAP2L1 WILD-TYPE 51 69 60 71 91

Figure S2633.  Get High-res Image Gene #915: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BAIAP2L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.006 (Fisher's exact test), Q value = 0.073

Table S9450.  Gene #915: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BAIAP2L1 MUTATED 1 2 0 4 1 0 0 3 1
BAIAP2L1 WILD-TYPE 68 46 39 12 52 20 21 35 49

Figure S2634.  Get High-res Image Gene #915: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BAIAP2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9451.  Gene #915: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BAIAP2L1 MUTATED 1 1 1 0 1 0
BAIAP2L1 WILD-TYPE 12 15 13 11 10 9
'BAIAP2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.74

Table S9452.  Gene #915: 'BAIAP2L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BAIAP2L1 MUTATED 0 0 0 1 2 0 1 0 0
BAIAP2L1 WILD-TYPE 11 7 7 8 6 7 10 9 5
'ZNF799 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9453.  Gene #916: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF799 MUTATED 0 3 3
ZNF799 WILD-TYPE 42 170 144
'ZNF799 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9454.  Gene #916: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF799 MUTATED 1 2 2
ZNF799 WILD-TYPE 61 71 73
'ZNF799 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S9455.  Gene #916: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF799 MUTATED 0 4 1
ZNF799 WILD-TYPE 70 116 99
'ZNF799 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S9456.  Gene #916: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF799 MUTATED 0 0 1 1 0 1 0 1 1
ZNF799 WILD-TYPE 41 26 29 28 39 68 20 13 21
'ZNF799 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S9457.  Gene #916: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF799 MUTATED 3 2 0 1
ZNF799 WILD-TYPE 97 70 72 120
'ZNF799 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S9458.  Gene #916: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF799 MUTATED 0 4 1 1 0
ZNF799 WILD-TYPE 59 71 73 118 38
'ZNF799 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00456 (Fisher's exact test), Q value = 0.062

Table S9459.  Gene #916: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF799 MUTATED 4 0 0 0 2
ZNF799 WILD-TYPE 47 76 61 71 93

Figure S2635.  Get High-res Image Gene #916: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ZNF799 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0328 (Fisher's exact test), Q value = 0.19

Table S9460.  Gene #916: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF799 MUTATED 1 0 0 0 1 3 0 0 1
ZNF799 WILD-TYPE 68 48 39 16 52 17 21 38 49

Figure S2636.  Get High-res Image Gene #916: 'ZNF799 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATIC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S9461.  Gene #917: 'ATIC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATIC MUTATED 2 0 0 1 0
ATIC WILD-TYPE 30 18 46 26 23
'ATIC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S9462.  Gene #917: 'ATIC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATIC MUTATED 3 0 0
ATIC WILD-TYPE 40 67 36

Figure S2637.  Get High-res Image Gene #917: 'ATIC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ATIC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.2

Table S9463.  Gene #917: 'ATIC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATIC MUTATED 0 3 10
ATIC WILD-TYPE 42 170 137

Figure S2638.  Get High-res Image Gene #917: 'ATIC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATIC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.49

Table S9464.  Gene #917: 'ATIC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATIC MUTATED 1 2 6
ATIC WILD-TYPE 61 71 69
'ATIC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9465.  Gene #917: 'ATIC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATIC MUTATED 2 4 4
ATIC WILD-TYPE 68 116 96
'ATIC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S9466.  Gene #917: 'ATIC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATIC MUTATED 1 1 1 2 0 4 1 0 0
ATIC WILD-TYPE 40 25 29 27 39 65 19 14 22
'ATIC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S9467.  Gene #917: 'ATIC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATIC MUTATED 3 4 2 4
ATIC WILD-TYPE 97 68 70 117
'ATIC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.19

Table S9468.  Gene #917: 'ATIC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATIC MUTATED 1 2 6 1 3
ATIC WILD-TYPE 58 73 68 118 35

Figure S2639.  Get High-res Image Gene #917: 'ATIC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATIC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S9469.  Gene #917: 'ATIC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATIC MUTATED 2 5 1 1 3
ATIC WILD-TYPE 49 71 60 70 92
'ATIC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S9470.  Gene #917: 'ATIC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATIC MUTATED 4 2 0 1 2 0 1 2 0
ATIC WILD-TYPE 65 46 39 15 51 20 20 36 50
'CPZ MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S9471.  Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CPZ MUTATED 2 0 0 1 0
CPZ WILD-TYPE 30 18 46 26 23
'CPZ MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9472.  Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CPZ MUTATED 1 1 1
CPZ WILD-TYPE 42 66 35
'CPZ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00058 (Fisher's exact test), Q value = 0.018

Table S9473.  Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CPZ MUTATED 1 1 13
CPZ WILD-TYPE 41 172 134

Figure S2640.  Get High-res Image Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CPZ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.099

Table S9474.  Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CPZ MUTATED 6 0 6
CPZ WILD-TYPE 56 73 69

Figure S2641.  Get High-res Image Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CPZ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S9475.  Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CPZ MUTATED 0 5 9
CPZ WILD-TYPE 70 115 91

Figure S2642.  Get High-res Image Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CPZ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S9476.  Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CPZ MUTATED 0 0 1 4 0 8 1 0 0
CPZ WILD-TYPE 41 26 29 25 39 61 19 14 22

Figure S2643.  Get High-res Image Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CPZ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00144 (Fisher's exact test), Q value = 0.031

Table S9477.  Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CPZ MUTATED 0 8 4 3
CPZ WILD-TYPE 100 64 68 118

Figure S2644.  Get High-res Image Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CPZ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.1

Table S9478.  Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CPZ MUTATED 1 2 9 2 1
CPZ WILD-TYPE 58 73 65 117 37

Figure S2645.  Get High-res Image Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CPZ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0829 (Fisher's exact test), Q value = 0.31

Table S9479.  Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CPZ MUTATED 1 8 2 1 3
CPZ WILD-TYPE 50 68 59 70 92
'CPZ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.57

Table S9480.  Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CPZ MUTATED 3 4 0 2 2 2 0 1 1
CPZ WILD-TYPE 66 44 39 14 51 18 21 37 49
'CPZ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S9481.  Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CPZ MUTATED 0 1 0 0 2 0
CPZ WILD-TYPE 13 15 14 11 9 9
'CPZ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S9482.  Gene #918: 'CPZ MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CPZ MUTATED 0 1 0 1 0 0 1 0 0
CPZ WILD-TYPE 11 6 7 8 8 7 10 9 5
'GRIA4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.99

Table S9483.  Gene #919: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GRIA4 MUTATED 3 1 1 1 1
GRIA4 WILD-TYPE 29 17 45 26 22
'GRIA4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.92

Table S9484.  Gene #919: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GRIA4 MUTATED 3 2 2
GRIA4 WILD-TYPE 40 65 34
'GRIA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S9485.  Gene #919: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GRIA4 MUTATED 2 15 13
GRIA4 WILD-TYPE 40 158 134
'GRIA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.47

Table S9486.  Gene #919: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GRIA4 MUTATED 8 10 4
GRIA4 WILD-TYPE 54 63 71
'GRIA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S9487.  Gene #919: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GRIA4 MUTATED 4 8 14
GRIA4 WILD-TYPE 66 112 86
'GRIA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 0.97

Table S9488.  Gene #919: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GRIA4 MUTATED 3 1 1 4 2 10 2 1 2
GRIA4 WILD-TYPE 38 25 29 25 37 59 18 13 20
'GRIA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S9489.  Gene #919: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GRIA4 MUTATED 10 8 6 6
GRIA4 WILD-TYPE 90 64 66 115
'GRIA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0757 (Fisher's exact test), Q value = 0.3

Table S9490.  Gene #919: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GRIA4 MUTATED 10 7 5 5 3
GRIA4 WILD-TYPE 49 68 69 114 35
'GRIA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S9491.  Gene #919: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GRIA4 MUTATED 3 7 7 6 7
GRIA4 WILD-TYPE 48 69 54 65 88
'GRIA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S9492.  Gene #919: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GRIA4 MUTATED 7 5 4 2 3 2 1 3 3
GRIA4 WILD-TYPE 62 43 35 14 50 18 20 35 47
'GRIA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.56

Table S9493.  Gene #919: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GRIA4 MUTATED 1 1 0 2 0 2
GRIA4 WILD-TYPE 12 15 14 9 11 7
'GRIA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S9494.  Gene #919: 'GRIA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GRIA4 MUTATED 1 1 0 0 0 0 1 2 1
GRIA4 WILD-TYPE 10 6 7 9 8 7 10 7 4
'NDUFAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.31

Table S9495.  Gene #920: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NDUFAF1 MUTATED 0 1 6
NDUFAF1 WILD-TYPE 42 172 141
'NDUFAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.93

Table S9496.  Gene #920: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NDUFAF1 MUTATED 1 2 4
NDUFAF1 WILD-TYPE 61 71 71
'NDUFAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.56

Table S9497.  Gene #920: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NDUFAF1 MUTATED 3 1 2
NDUFAF1 WILD-TYPE 67 119 98
'NDUFAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S9498.  Gene #920: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NDUFAF1 MUTATED 1 0 0 0 1 3 0 1 0
NDUFAF1 WILD-TYPE 40 26 30 29 38 66 20 13 22
'NDUFAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0944 (Fisher's exact test), Q value = 0.34

Table S9499.  Gene #920: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NDUFAF1 MUTATED 3 3 1 0
NDUFAF1 WILD-TYPE 97 69 71 121
'NDUFAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0909 (Fisher's exact test), Q value = 0.33

Table S9500.  Gene #920: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NDUFAF1 MUTATED 1 3 3 0 0
NDUFAF1 WILD-TYPE 58 72 71 119 38
'NDUFAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00141 (Fisher's exact test), Q value = 0.031

Table S9501.  Gene #920: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NDUFAF1 MUTATED 0 6 1 0 0
NDUFAF1 WILD-TYPE 51 70 60 71 95

Figure S2646.  Get High-res Image Gene #920: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NDUFAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S9502.  Gene #920: 'NDUFAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NDUFAF1 MUTATED 4 1 0 1 1 0 0 0 0
NDUFAF1 WILD-TYPE 65 47 39 15 52 20 21 38 50
'SKIL MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9503.  Gene #921: 'SKIL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SKIL MUTATED 0 4 3
SKIL WILD-TYPE 42 169 144
'SKIL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S9504.  Gene #921: 'SKIL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SKIL MUTATED 2 3 2
SKIL WILD-TYPE 60 70 73
'SKIL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S9505.  Gene #921: 'SKIL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SKIL MUTATED 0 3 3
SKIL WILD-TYPE 70 117 97
'SKIL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S9506.  Gene #921: 'SKIL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SKIL MUTATED 2 0 0 1 0 2 0 0 1
SKIL WILD-TYPE 39 26 30 28 39 67 20 14 21
'SKIL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.21

Table S9507.  Gene #921: 'SKIL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SKIL MUTATED 2 4 1 0
SKIL WILD-TYPE 98 68 71 121

Figure S2647.  Get High-res Image Gene #921: 'SKIL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SKIL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0421 (Fisher's exact test), Q value = 0.22

Table S9508.  Gene #921: 'SKIL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SKIL MUTATED 2 1 4 0 0
SKIL WILD-TYPE 57 74 70 119 38

Figure S2648.  Get High-res Image Gene #921: 'SKIL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SKIL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0853 (Fisher's exact test), Q value = 0.32

Table S9509.  Gene #921: 'SKIL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SKIL MUTATED 0 4 1 2 0
SKIL WILD-TYPE 51 72 60 69 95
'SKIL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.82

Table S9510.  Gene #921: 'SKIL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SKIL MUTATED 3 1 0 1 2 0 0 0 0
SKIL WILD-TYPE 66 47 39 15 51 20 21 38 50
'ATP10B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S9511.  Gene #922: 'ATP10B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATP10B MUTATED 1 4 10
ATP10B WILD-TYPE 41 169 137
'ATP10B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9512.  Gene #922: 'ATP10B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATP10B MUTATED 4 4 5
ATP10B WILD-TYPE 58 69 70
'ATP10B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.78

Table S9513.  Gene #922: 'ATP10B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATP10B MUTATED 2 5 7
ATP10B WILD-TYPE 68 115 93
'ATP10B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.993 (Fisher's exact test), Q value = 1

Table S9514.  Gene #922: 'ATP10B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATP10B MUTATED 3 1 1 1 3 3 1 0 1
ATP10B WILD-TYPE 38 25 29 28 36 66 19 14 21
'ATP10B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.37

Table S9515.  Gene #922: 'ATP10B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATP10B MUTATED 3 6 4 2
ATP10B WILD-TYPE 97 66 68 119
'ATP10B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0097 (Fisher's exact test), Q value = 0.093

Table S9516.  Gene #922: 'ATP10B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATP10B MUTATED 4 3 6 0 2
ATP10B WILD-TYPE 55 72 68 119 36

Figure S2649.  Get High-res Image Gene #922: 'ATP10B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATP10B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.2

Table S9517.  Gene #922: 'ATP10B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATP10B MUTATED 2 6 5 0 2
ATP10B WILD-TYPE 49 70 56 71 93

Figure S2650.  Get High-res Image Gene #922: 'ATP10B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ATP10B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S9518.  Gene #922: 'ATP10B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATP10B MUTATED 3 4 0 2 3 1 0 1 1
ATP10B WILD-TYPE 66 44 39 14 50 19 21 37 49
'ATP10B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00977 (Fisher's exact test), Q value = 0.093

Table S9519.  Gene #922: 'ATP10B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ATP10B MUTATED 0 0 0 0 3 1
ATP10B WILD-TYPE 13 16 14 11 8 8

Figure S2651.  Get High-res Image Gene #922: 'ATP10B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ATP10B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.58

Table S9520.  Gene #922: 'ATP10B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ATP10B MUTATED 0 0 0 1 0 2 1 0 0
ATP10B WILD-TYPE 11 7 7 8 8 5 10 9 5
'NUP205 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.97

Table S9521.  Gene #923: 'NUP205 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NUP205 MUTATED 3 1 2 1 0
NUP205 WILD-TYPE 29 17 44 26 23
'NUP205 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.92

Table S9522.  Gene #923: 'NUP205 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NUP205 MUTATED 3 2 2
NUP205 WILD-TYPE 40 65 34
'NUP205 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.012

Table S9523.  Gene #923: 'NUP205 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NUP205 MUTATED 0 5 19
NUP205 WILD-TYPE 42 168 128

Figure S2652.  Get High-res Image Gene #923: 'NUP205 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NUP205 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0375 (Fisher's exact test), Q value = 0.21

Table S9524.  Gene #923: 'NUP205 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NUP205 MUTATED 9 2 5
NUP205 WILD-TYPE 53 71 70

Figure S2653.  Get High-res Image Gene #923: 'NUP205 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NUP205 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S9525.  Gene #923: 'NUP205 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NUP205 MUTATED 5 4 8
NUP205 WILD-TYPE 65 116 92
'NUP205 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S9526.  Gene #923: 'NUP205 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NUP205 MUTATED 2 4 2 0 1 4 3 1 0
NUP205 WILD-TYPE 39 22 28 29 38 65 17 13 22
'NUP205 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0505 (Fisher's exact test), Q value = 0.24

Table S9527.  Gene #923: 'NUP205 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NUP205 MUTATED 2 7 8 7
NUP205 WILD-TYPE 98 65 64 114
'NUP205 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S9528.  Gene #923: 'NUP205 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NUP205 MUTATED 3 3 10 6 2
NUP205 WILD-TYPE 56 72 64 113 36
'NUP205 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S9529.  Gene #923: 'NUP205 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NUP205 MUTATED 1 8 4 3 8
NUP205 WILD-TYPE 50 68 57 68 87
'NUP205 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S9530.  Gene #923: 'NUP205 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NUP205 MUTATED 3 6 0 2 2 2 3 2 4
NUP205 WILD-TYPE 66 42 39 14 51 18 18 36 46
'NUP205 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S9531.  Gene #923: 'NUP205 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NUP205 MUTATED 0 2 1 0 1 1
NUP205 WILD-TYPE 13 14 13 11 10 8
'NUP205 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.88

Table S9532.  Gene #923: 'NUP205 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NUP205 MUTATED 2 0 0 0 1 0 2 0 0
NUP205 WILD-TYPE 9 7 7 9 7 7 9 9 5
'ALK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S9533.  Gene #924: 'ALK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ALK MUTATED 7 0 1 2 1
ALK WILD-TYPE 25 18 45 25 22

Figure S2654.  Get High-res Image Gene #924: 'ALK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ALK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00719 (Fisher's exact test), Q value = 0.079

Table S9534.  Gene #924: 'ALK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ALK MUTATED 8 2 1
ALK WILD-TYPE 35 65 35

Figure S2655.  Get High-res Image Gene #924: 'ALK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ALK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S9535.  Gene #924: 'ALK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ALK MUTATED 3 13 19
ALK WILD-TYPE 39 160 128
'ALK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S9536.  Gene #924: 'ALK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ALK MUTATED 9 8 6
ALK WILD-TYPE 53 65 69
'ALK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0447 (Fisher's exact test), Q value = 0.22

Table S9537.  Gene #924: 'ALK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ALK MUTATED 3 11 16
ALK WILD-TYPE 67 109 84

Figure S2656.  Get High-res Image Gene #924: 'ALK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ALK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 0.91

Table S9538.  Gene #924: 'ALK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ALK MUTATED 2 2 2 4 4 9 4 0 3
ALK WILD-TYPE 39 24 28 25 35 60 16 14 19
'ALK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.94

Table S9539.  Gene #924: 'ALK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ALK MUTATED 11 4 7 13
ALK WILD-TYPE 89 68 65 108
'ALK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.096

Table S9540.  Gene #924: 'ALK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ALK MUTATED 4 8 9 5 9
ALK WILD-TYPE 55 67 65 114 29

Figure S2657.  Get High-res Image Gene #924: 'ALK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ALK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S9541.  Gene #924: 'ALK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ALK MUTATED 5 9 6 4 10
ALK WILD-TYPE 46 67 55 67 85
'ALK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.46

Table S9542.  Gene #924: 'ALK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ALK MUTATED 7 6 1 2 7 3 1 6 1
ALK WILD-TYPE 62 42 38 14 46 17 20 32 49
'ALK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S9543.  Gene #924: 'ALK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ALK MUTATED 1 0 0 0 2 1
ALK WILD-TYPE 12 16 14 11 9 8
'ALK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.89

Table S9544.  Gene #924: 'ALK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ALK MUTATED 0 0 0 1 0 0 1 2 0
ALK WILD-TYPE 11 7 7 8 8 7 10 7 5
'GRB14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00852 (Fisher's exact test), Q value = 0.087

Table S9545.  Gene #925: 'GRB14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GRB14 MUTATED 4 0 0 0 0
GRB14 WILD-TYPE 28 18 46 27 23

Figure S2658.  Get High-res Image Gene #925: 'GRB14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GRB14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0522 (Fisher's exact test), Q value = 0.24

Table S9546.  Gene #925: 'GRB14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GRB14 MUTATED 3 0 1
GRB14 WILD-TYPE 40 67 35
'GRB14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S9547.  Gene #925: 'GRB14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GRB14 MUTATED 0 3 6
GRB14 WILD-TYPE 42 170 141
'GRB14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S9548.  Gene #925: 'GRB14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GRB14 MUTATED 2 1 2
GRB14 WILD-TYPE 60 72 73
'GRB14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S9549.  Gene #925: 'GRB14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GRB14 MUTATED 1 2 3
GRB14 WILD-TYPE 69 118 97
'GRB14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S9550.  Gene #925: 'GRB14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GRB14 MUTATED 1 0 0 0 2 1 2 0 0
GRB14 WILD-TYPE 40 26 30 29 37 68 18 14 22
'GRB14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.86

Table S9551.  Gene #925: 'GRB14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GRB14 MUTATED 1 3 1 4
GRB14 WILD-TYPE 99 69 71 117
'GRB14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S9552.  Gene #925: 'GRB14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GRB14 MUTATED 2 0 3 1 3
GRB14 WILD-TYPE 57 75 71 118 35

Figure S2659.  Get High-res Image Gene #925: 'GRB14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GRB14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9553.  Gene #925: 'GRB14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GRB14 MUTATED 1 2 1 2 3
GRB14 WILD-TYPE 50 74 60 69 92
'GRB14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 0.95

Table S9554.  Gene #925: 'GRB14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GRB14 MUTATED 3 1 0 0 2 0 1 2 0
GRB14 WILD-TYPE 66 47 39 16 51 20 20 36 50
'NSUN6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0059 (Fisher's exact test), Q value = 0.073

Table S9555.  Gene #926: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NSUN6 MUTATED 1 0 7
NSUN6 WILD-TYPE 41 173 140

Figure S2660.  Get High-res Image Gene #926: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NSUN6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S9556.  Gene #926: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NSUN6 MUTATED 3 0 4
NSUN6 WILD-TYPE 59 73 71
'NSUN6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S9557.  Gene #926: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NSUN6 MUTATED 2 4 2
NSUN6 WILD-TYPE 68 116 98
'NSUN6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.997 (Fisher's exact test), Q value = 1

Table S9558.  Gene #926: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NSUN6 MUTATED 2 1 1 1 1 2 0 0 0
NSUN6 WILD-TYPE 39 25 29 28 38 67 20 14 22
'NSUN6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S9559.  Gene #926: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NSUN6 MUTATED 0 3 3 2
NSUN6 WILD-TYPE 100 69 69 119
'NSUN6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00818 (Fisher's exact test), Q value = 0.085

Table S9560.  Gene #926: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NSUN6 MUTATED 0 0 6 2 0
NSUN6 WILD-TYPE 59 75 68 117 38

Figure S2661.  Get High-res Image Gene #926: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NSUN6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S9561.  Gene #926: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NSUN6 MUTATED 0 4 1 0 3
NSUN6 WILD-TYPE 51 72 60 71 92
'NSUN6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.61

Table S9562.  Gene #926: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NSUN6 MUTATED 1 3 0 1 0 1 0 1 1
NSUN6 WILD-TYPE 68 45 39 15 53 19 21 37 49
'NSUN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.75

Table S9563.  Gene #926: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NSUN6 MUTATED 0 2 0 0 1 0
NSUN6 WILD-TYPE 13 14 14 11 10 9
'NSUN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S9564.  Gene #926: 'NSUN6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NSUN6 MUTATED 0 0 0 0 0 2 1 0 0
NSUN6 WILD-TYPE 11 7 7 9 8 5 10 9 5
'SAMD9L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00571 (Fisher's exact test), Q value = 0.071

Table S9565.  Gene #927: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SAMD9L MUTATED 5 0 0 3 0
SAMD9L WILD-TYPE 27 18 46 24 23

Figure S2662.  Get High-res Image Gene #927: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SAMD9L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S9566.  Gene #927: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SAMD9L MUTATED 5 2 1
SAMD9L WILD-TYPE 38 65 35
'SAMD9L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.19

Table S9567.  Gene #927: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SAMD9L MUTATED 3 5 14
SAMD9L WILD-TYPE 39 168 133

Figure S2663.  Get High-res Image Gene #927: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SAMD9L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S9568.  Gene #927: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SAMD9L MUTATED 3 6 6
SAMD9L WILD-TYPE 59 67 69
'SAMD9L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.13

Table S9569.  Gene #927: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SAMD9L MUTATED 0 11 6
SAMD9L WILD-TYPE 70 109 94

Figure S2664.  Get High-res Image Gene #927: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SAMD9L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S9570.  Gene #927: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SAMD9L MUTATED 1 2 1 1 4 4 1 2 1
SAMD9L WILD-TYPE 40 24 29 28 35 65 19 12 21
'SAMD9L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S9571.  Gene #927: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SAMD9L MUTATED 5 6 3 8
SAMD9L WILD-TYPE 95 66 69 113
'SAMD9L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.54

Table S9572.  Gene #927: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SAMD9L MUTATED 3 4 6 4 5
SAMD9L WILD-TYPE 56 71 68 115 33
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S9573.  Gene #927: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SAMD9L MUTATED 2 5 2 5 7
SAMD9L WILD-TYPE 49 71 59 66 88
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.53

Table S9574.  Gene #927: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SAMD9L MUTATED 3 2 1 3 4 3 0 3 2
SAMD9L WILD-TYPE 66 46 38 13 49 17 21 35 48
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S9575.  Gene #927: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SAMD9L MUTATED 1 0 1 1 2 0
SAMD9L WILD-TYPE 12 16 13 10 9 9
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0955 (Fisher's exact test), Q value = 0.34

Table S9576.  Gene #927: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SAMD9L MUTATED 0 0 0 2 0 0 0 2 1
SAMD9L WILD-TYPE 11 7 7 7 8 7 11 7 4
'PPP2R5E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0022 (Fisher's exact test), Q value = 0.04

Table S9577.  Gene #928: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PPP2R5E MUTATED 0 0 8
PPP2R5E WILD-TYPE 42 173 139

Figure S2665.  Get High-res Image Gene #928: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PPP2R5E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S9578.  Gene #928: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PPP2R5E MUTATED 2 0 4
PPP2R5E WILD-TYPE 60 73 71
'PPP2R5E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S9579.  Gene #928: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PPP2R5E MUTATED 1 1 5
PPP2R5E WILD-TYPE 69 119 95
'PPP2R5E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.98

Table S9580.  Gene #928: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PPP2R5E MUTATED 2 1 0 0 0 3 1 0 0
PPP2R5E WILD-TYPE 39 25 30 29 39 66 19 14 22
'PPP2R5E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S9581.  Gene #928: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PPP2R5E MUTATED 0 3 3 2
PPP2R5E WILD-TYPE 100 69 69 119
'PPP2R5E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S9582.  Gene #928: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PPP2R5E MUTATED 1 1 3 1 2
PPP2R5E WILD-TYPE 58 74 71 118 36
'PPP2R5E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S9583.  Gene #928: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PPP2R5E MUTATED 0 3 2 0 2
PPP2R5E WILD-TYPE 51 73 59 71 93
'PPP2R5E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 0.24

Table S9584.  Gene #928: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PPP2R5E MUTATED 1 2 0 2 0 0 0 2 0
PPP2R5E WILD-TYPE 68 46 39 14 53 20 21 36 50

Figure S2666.  Get High-res Image Gene #928: 'PPP2R5E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LUM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9585.  Gene #929: 'LUM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LUM MUTATED 1 0 1 1 0
LUM WILD-TYPE 31 18 45 26 23
'LUM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S9586.  Gene #929: 'LUM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LUM MUTATED 1 2 0
LUM WILD-TYPE 42 65 36
'LUM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S9587.  Gene #929: 'LUM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LUM MUTATED 2 4 6
LUM WILD-TYPE 40 169 141
'LUM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.84

Table S9588.  Gene #929: 'LUM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LUM MUTATED 3 1 3
LUM WILD-TYPE 59 72 72
'LUM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.83

Table S9589.  Gene #929: 'LUM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LUM MUTATED 1 6 4
LUM WILD-TYPE 69 114 96
'LUM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.55

Table S9590.  Gene #929: 'LUM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LUM MUTATED 1 1 4 1 1 1 1 1 0
LUM WILD-TYPE 40 25 26 28 38 68 19 13 22
'LUM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S9591.  Gene #929: 'LUM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LUM MUTATED 3 2 1 6
LUM WILD-TYPE 97 70 71 115
'LUM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.85

Table S9592.  Gene #929: 'LUM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LUM MUTATED 1 3 2 3 3
LUM WILD-TYPE 58 72 72 116 35
'LUM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S9593.  Gene #929: 'LUM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LUM MUTATED 2 3 1 0 6
LUM WILD-TYPE 49 73 60 71 89
'LUM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.93

Table S9594.  Gene #929: 'LUM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LUM MUTATED 1 1 2 1 2 1 0 3 1
LUM WILD-TYPE 68 47 37 15 51 19 21 35 49
'LUM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S9595.  Gene #929: 'LUM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LUM MUTATED 0 1 0 1 0 1
LUM WILD-TYPE 13 15 14 10 11 8
'LUM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S9596.  Gene #929: 'LUM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LUM MUTATED 1 0 0 0 0 1 1 0 0
LUM WILD-TYPE 10 7 7 9 8 6 10 9 5
'MTTP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00764 (Fisher's exact test), Q value = 0.082

Table S9597.  Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MTTP MUTATED 5 0 0 1 0
MTTP WILD-TYPE 27 18 46 26 23

Figure S2667.  Get High-res Image Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MTTP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00693 (Fisher's exact test), Q value = 0.078

Table S9598.  Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MTTP MUTATED 5 0 1
MTTP WILD-TYPE 38 67 35

Figure S2668.  Get High-res Image Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MTTP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00116 (Fisher's exact test), Q value = 0.027

Table S9599.  Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MTTP MUTATED 3 3 16
MTTP WILD-TYPE 39 170 131

Figure S2669.  Get High-res Image Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MTTP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S9600.  Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MTTP MUTATED 6 3 7
MTTP WILD-TYPE 56 70 68
'MTTP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0197 (Fisher's exact test), Q value = 0.14

Table S9601.  Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MTTP MUTATED 4 3 12
MTTP WILD-TYPE 66 117 88

Figure S2670.  Get High-res Image Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MTTP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S9602.  Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MTTP MUTATED 5 0 0 2 2 7 2 0 1
MTTP WILD-TYPE 36 26 30 27 37 62 18 14 21
'MTTP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S9603.  Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MTTP MUTATED 3 7 6 7
MTTP WILD-TYPE 97 65 66 114
'MTTP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00381 (Fisher's exact test), Q value = 0.055

Table S9604.  Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MTTP MUTATED 5 2 9 2 5
MTTP WILD-TYPE 54 73 65 117 33

Figure S2671.  Get High-res Image Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MTTP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S9605.  Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MTTP MUTATED 1 8 5 3 5
MTTP WILD-TYPE 50 68 56 68 90
'MTTP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00616 (Fisher's exact test), Q value = 0.074

Table S9606.  Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MTTP MUTATED 4 7 0 3 4 0 0 4 0
MTTP WILD-TYPE 65 41 39 13 49 20 21 34 50

Figure S2672.  Get High-res Image Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MTTP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S9607.  Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MTTP MUTATED 0 3 1 1 2 0
MTTP WILD-TYPE 13 13 13 10 9 9
'MTTP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S9608.  Gene #930: 'MTTP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MTTP MUTATED 1 1 1 1 0 2 1 0 0
MTTP WILD-TYPE 10 6 6 8 8 5 10 9 5
'GAD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.28

Table S9609.  Gene #931: 'GAD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GAD2 MUTATED 4 0 1 0 0
GAD2 WILD-TYPE 28 18 45 27 23
'GAD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0675 (Fisher's exact test), Q value = 0.28

Table S9610.  Gene #931: 'GAD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GAD2 MUTATED 4 1 0
GAD2 WILD-TYPE 39 66 36
'GAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0679 (Fisher's exact test), Q value = 0.28

Table S9611.  Gene #931: 'GAD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GAD2 MUTATED 1 4 11
GAD2 WILD-TYPE 41 169 136
'GAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S9612.  Gene #931: 'GAD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GAD2 MUTATED 4 3 4
GAD2 WILD-TYPE 58 70 71
'GAD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S9613.  Gene #931: 'GAD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GAD2 MUTATED 1 6 7
GAD2 WILD-TYPE 69 114 93
'GAD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0913 (Fisher's exact test), Q value = 0.33

Table S9614.  Gene #931: 'GAD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GAD2 MUTATED 0 1 1 2 0 7 0 2 1
GAD2 WILD-TYPE 41 25 29 27 39 62 20 12 21
'GAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.97

Table S9615.  Gene #931: 'GAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GAD2 MUTATED 3 5 3 5
GAD2 WILD-TYPE 97 67 69 116
'GAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0524 (Fisher's exact test), Q value = 0.25

Table S9616.  Gene #931: 'GAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GAD2 MUTATED 4 1 6 2 3
GAD2 WILD-TYPE 55 74 68 117 35
'GAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0899 (Fisher's exact test), Q value = 0.33

Table S9617.  Gene #931: 'GAD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GAD2 MUTATED 1 6 4 0 4
GAD2 WILD-TYPE 50 70 57 71 91
'GAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S9618.  Gene #931: 'GAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GAD2 MUTATED 3 3 2 2 2 0 0 3 0
GAD2 WILD-TYPE 66 45 37 14 51 20 21 35 50
'GAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S9619.  Gene #931: 'GAD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GAD2 MUTATED 0 1 1 1 0 0
GAD2 WILD-TYPE 13 15 13 10 11 9
'GAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 0.99

Table S9620.  Gene #931: 'GAD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GAD2 MUTATED 0 1 0 0 1 0 1 0 0
GAD2 WILD-TYPE 11 6 7 9 7 7 10 9 5
'UBR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.2

Table S9621.  Gene #932: 'UBR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
UBR2 MUTATED 3 0 0 3 0
UBR2 WILD-TYPE 29 18 46 24 23

Figure S2673.  Get High-res Image Gene #932: 'UBR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'UBR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.88

Table S9622.  Gene #932: 'UBR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
UBR2 MUTATED 3 2 1
UBR2 WILD-TYPE 40 65 35
'UBR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S9623.  Gene #932: 'UBR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UBR2 MUTATED 2 5 8
UBR2 WILD-TYPE 40 168 139
'UBR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.99

Table S9624.  Gene #932: 'UBR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UBR2 MUTATED 3 4 2
UBR2 WILD-TYPE 59 69 73
'UBR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S9625.  Gene #932: 'UBR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UBR2 MUTATED 0 7 5
UBR2 WILD-TYPE 70 113 95
'UBR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S9626.  Gene #932: 'UBR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UBR2 MUTATED 2 0 1 4 1 4 0 0 0
UBR2 WILD-TYPE 39 26 29 25 38 65 20 14 22
'UBR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9627.  Gene #932: 'UBR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UBR2 MUTATED 4 2 3 5
UBR2 WILD-TYPE 96 70 69 116
'UBR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.55

Table S9628.  Gene #932: 'UBR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UBR2 MUTATED 2 5 2 2 3
UBR2 WILD-TYPE 57 70 72 117 35
'UBR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.97

Table S9629.  Gene #932: 'UBR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UBR2 MUTATED 1 2 4 2 5
UBR2 WILD-TYPE 50 74 57 69 90
'UBR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S9630.  Gene #932: 'UBR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UBR2 MUTATED 0 3 1 1 4 1 0 2 2
UBR2 WILD-TYPE 69 45 38 15 49 19 21 36 48
'UBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.53

Table S9631.  Gene #932: 'UBR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
UBR2 MUTATED 2 0 0 1 0 1
UBR2 WILD-TYPE 11 16 14 10 11 8
'UBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S9632.  Gene #932: 'UBR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
UBR2 MUTATED 0 0 1 2 0 1 0 0 0
UBR2 WILD-TYPE 11 7 6 7 8 6 11 9 5
'SMC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S9633.  Gene #933: 'SMC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SMC2 MUTATED 3 8 14
SMC2 WILD-TYPE 39 165 133
'SMC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S9634.  Gene #933: 'SMC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SMC2 MUTATED 5 8 9
SMC2 WILD-TYPE 57 65 66
'SMC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S9635.  Gene #933: 'SMC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SMC2 MUTATED 4 10 8
SMC2 WILD-TYPE 66 110 92
'SMC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S9636.  Gene #933: 'SMC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SMC2 MUTATED 2 2 1 2 1 9 2 3 0
SMC2 WILD-TYPE 39 24 29 27 38 60 18 11 22
'SMC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00121 (Fisher's exact test), Q value = 0.028

Table S9637.  Gene #933: 'SMC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SMC2 MUTATED 7 12 4 2
SMC2 WILD-TYPE 93 60 68 119

Figure S2674.  Get High-res Image Gene #933: 'SMC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SMC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0013 (Fisher's exact test), Q value = 0.03

Table S9638.  Gene #933: 'SMC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SMC2 MUTATED 4 10 9 2 0
SMC2 WILD-TYPE 55 65 65 117 38

Figure S2675.  Get High-res Image Gene #933: 'SMC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S9639.  Gene #933: 'SMC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SMC2 MUTATED 4 10 4 6 1
SMC2 WILD-TYPE 47 66 57 65 94

Figure S2676.  Get High-res Image Gene #933: 'SMC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SMC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00479 (Fisher's exact test), Q value = 0.064

Table S9640.  Gene #933: 'SMC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SMC2 MUTATED 7 2 3 6 3 2 0 1 1
SMC2 WILD-TYPE 62 46 36 10 50 18 21 37 49

Figure S2677.  Get High-res Image Gene #933: 'SMC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SMC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0847 (Fisher's exact test), Q value = 0.32

Table S9641.  Gene #933: 'SMC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SMC2 MUTATED 2 0 1 0 3 0
SMC2 WILD-TYPE 11 16 13 11 8 9
'SMC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.58

Table S9642.  Gene #933: 'SMC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SMC2 MUTATED 0 0 0 3 1 0 1 1 0
SMC2 WILD-TYPE 11 7 7 6 7 7 10 8 5
'PSD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.21

Table S9643.  Gene #934: 'PSD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PSD3 MUTATED 1 1 7
PSD3 WILD-TYPE 41 172 140

Figure S2678.  Get High-res Image Gene #934: 'PSD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PSD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.2

Table S9644.  Gene #934: 'PSD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PSD3 MUTATED 3 0 6
PSD3 WILD-TYPE 59 73 69

Figure S2679.  Get High-res Image Gene #934: 'PSD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PSD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S9645.  Gene #934: 'PSD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PSD3 MUTATED 1 3 5
PSD3 WILD-TYPE 69 117 95
'PSD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0427 (Fisher's exact test), Q value = 0.22

Table S9646.  Gene #934: 'PSD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PSD3 MUTATED 0 2 0 0 0 3 3 0 1
PSD3 WILD-TYPE 41 24 30 29 39 66 17 14 21

Figure S2680.  Get High-res Image Gene #934: 'PSD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PSD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S9647.  Gene #934: 'PSD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PSD3 MUTATED 1 5 2 2
PSD3 WILD-TYPE 99 67 70 119
'PSD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S9648.  Gene #934: 'PSD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PSD3 MUTATED 2 1 5 1 1
PSD3 WILD-TYPE 57 74 69 118 37
'PSD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S9649.  Gene #934: 'PSD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PSD3 MUTATED 2 5 1 0 2
PSD3 WILD-TYPE 49 71 60 71 93
'PSD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00848 (Fisher's exact test), Q value = 0.086

Table S9650.  Gene #934: 'PSD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PSD3 MUTATED 1 1 0 4 1 0 0 1 2
PSD3 WILD-TYPE 68 47 39 12 52 20 21 37 48

Figure S2681.  Get High-res Image Gene #934: 'PSD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PANK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S9651.  Gene #935: 'PANK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PANK1 MUTATED 1 0 0 2 0
PANK1 WILD-TYPE 31 18 46 25 23
'PANK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S9652.  Gene #935: 'PANK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PANK1 MUTATED 2 1 0
PANK1 WILD-TYPE 41 66 36
'PANK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00731 (Fisher's exact test), Q value = 0.08

Table S9653.  Gene #935: 'PANK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PANK1 MUTATED 0 0 7
PANK1 WILD-TYPE 42 173 140

Figure S2682.  Get High-res Image Gene #935: 'PANK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PANK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.083 (Fisher's exact test), Q value = 0.31

Table S9654.  Gene #935: 'PANK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PANK1 MUTATED 1 0 4
PANK1 WILD-TYPE 61 73 71
'PANK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S9655.  Gene #935: 'PANK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PANK1 MUTATED 1 2 4
PANK1 WILD-TYPE 69 118 96
'PANK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 0.99

Table S9656.  Gene #935: 'PANK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PANK1 MUTATED 0 0 1 0 2 3 1 0 0
PANK1 WILD-TYPE 41 26 29 29 37 66 19 14 22
'PANK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 0.18

Table S9657.  Gene #935: 'PANK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PANK1 MUTATED 0 4 0 3
PANK1 WILD-TYPE 100 68 72 118

Figure S2683.  Get High-res Image Gene #935: 'PANK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PANK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S9658.  Gene #935: 'PANK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PANK1 MUTATED 0 1 3 1 2
PANK1 WILD-TYPE 59 74 71 118 36
'PANK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.46

Table S9659.  Gene #935: 'PANK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PANK1 MUTATED 0 3 0 0 3
PANK1 WILD-TYPE 51 73 61 71 92
'PANK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0592 (Fisher's exact test), Q value = 0.26

Table S9660.  Gene #935: 'PANK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PANK1 MUTATED 1 0 0 2 0 1 0 1 1
PANK1 WILD-TYPE 68 48 39 14 53 19 21 37 49
'C4ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S9661.  Gene #936: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C4ORF49 MUTATED 0 2 3
C4ORF49 WILD-TYPE 42 171 144
'C4ORF49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S9662.  Gene #936: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C4ORF49 MUTATED 1 1 3
C4ORF49 WILD-TYPE 61 72 72
'C4ORF49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S9663.  Gene #936: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C4ORF49 MUTATED 0 3 2
C4ORF49 WILD-TYPE 70 117 98
'C4ORF49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.92

Table S9664.  Gene #936: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C4ORF49 MUTATED 0 1 0 1 0 2 1 0 0
C4ORF49 WILD-TYPE 41 25 30 28 39 67 19 14 22
'C4ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S9665.  Gene #936: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C4ORF49 MUTATED 1 3 0 1
C4ORF49 WILD-TYPE 99 69 72 120
'C4ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S9666.  Gene #936: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C4ORF49 MUTATED 0 2 2 1 0
C4ORF49 WILD-TYPE 59 73 72 118 38
'C4ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S9667.  Gene #936: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C4ORF49 MUTATED 1 2 1 0 1
C4ORF49 WILD-TYPE 50 74 60 71 94
'C4ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S9668.  Gene #936: 'C4ORF49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C4ORF49 MUTATED 0 1 1 1 0 1 0 0 1
C4ORF49 WILD-TYPE 69 47 38 15 53 19 21 38 49
'ADM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S9669.  Gene #937: 'ADM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ADM MUTATED 0 0 6
ADM WILD-TYPE 42 173 141

Figure S2684.  Get High-res Image Gene #937: 'ADM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S9670.  Gene #937: 'ADM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ADM MUTATED 2 0 2
ADM WILD-TYPE 60 73 73
'ADM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.79

Table S9671.  Gene #937: 'ADM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ADM MUTATED 1 1 3
ADM WILD-TYPE 69 119 97
'ADM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S9672.  Gene #937: 'ADM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ADM MUTATED 0 2 0 0 0 2 1 0 0
ADM WILD-TYPE 41 24 30 29 39 67 19 14 22
'ADM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0821 (Fisher's exact test), Q value = 0.31

Table S9673.  Gene #937: 'ADM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ADM MUTATED 0 3 0 3
ADM WILD-TYPE 100 69 72 118
'ADM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.57

Table S9674.  Gene #937: 'ADM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ADM MUTATED 0 0 3 2 1
ADM WILD-TYPE 59 75 71 117 37
'ADM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S9675.  Gene #937: 'ADM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ADM MUTATED 0 3 0 0 3
ADM WILD-TYPE 51 73 61 71 92
'ADM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 7e-04 (Fisher's exact test), Q value = 0.02

Table S9676.  Gene #937: 'ADM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ADM MUTATED 0 0 0 3 0 0 0 2 1
ADM WILD-TYPE 69 48 39 13 53 20 21 36 49

Figure S2685.  Get High-res Image Gene #937: 'ADM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DCAF12L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S9677.  Gene #938: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DCAF12L2 MUTATED 2 0 0 1 0
DCAF12L2 WILD-TYPE 30 18 46 26 23
'DCAF12L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S9678.  Gene #938: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DCAF12L2 MUTATED 2 1 0
DCAF12L2 WILD-TYPE 41 66 36
'DCAF12L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S9679.  Gene #938: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DCAF12L2 MUTATED 0 7 10
DCAF12L2 WILD-TYPE 42 166 137
'DCAF12L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.94

Table S9680.  Gene #938: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DCAF12L2 MUTATED 3 4 7
DCAF12L2 WILD-TYPE 59 69 68
'DCAF12L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.98

Table S9681.  Gene #938: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DCAF12L2 MUTATED 2 5 6
DCAF12L2 WILD-TYPE 68 115 94
'DCAF12L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S9682.  Gene #938: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DCAF12L2 MUTATED 2 1 1 2 1 4 1 1 0
DCAF12L2 WILD-TYPE 39 25 29 27 38 65 19 13 22
'DCAF12L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S9683.  Gene #938: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DCAF12L2 MUTATED 4 4 6 3
DCAF12L2 WILD-TYPE 96 68 66 118
'DCAF12L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S9684.  Gene #938: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DCAF12L2 MUTATED 5 2 7 1 2
DCAF12L2 WILD-TYPE 54 73 67 118 36

Figure S2686.  Get High-res Image Gene #938: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DCAF12L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0638 (Fisher's exact test), Q value = 0.27

Table S9685.  Gene #938: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DCAF12L2 MUTATED 2 8 4 1 2
DCAF12L2 WILD-TYPE 49 68 57 70 93
'DCAF12L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0602 (Fisher's exact test), Q value = 0.26

Table S9686.  Gene #938: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DCAF12L2 MUTATED 4 4 1 3 1 2 0 2 0
DCAF12L2 WILD-TYPE 65 44 38 13 52 18 21 36 50
'DCAF12L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S9687.  Gene #938: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DCAF12L2 MUTATED 0 1 0 1 2 2
DCAF12L2 WILD-TYPE 13 15 14 10 9 7
'DCAF12L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.97

Table S9688.  Gene #938: 'DCAF12L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DCAF12L2 MUTATED 2 1 0 0 1 0 2 0 0
DCAF12L2 WILD-TYPE 9 6 7 9 7 7 9 9 5
'DIAPH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 0.24

Table S9689.  Gene #939: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DIAPH2 MUTATED 4 0 0 1 2
DIAPH2 WILD-TYPE 28 18 46 26 21

Figure S2687.  Get High-res Image Gene #939: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DIAPH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S9690.  Gene #939: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DIAPH2 MUTATED 4 1 2
DIAPH2 WILD-TYPE 39 66 34
'DIAPH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S9691.  Gene #939: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DIAPH2 MUTATED 2 7 11
DIAPH2 WILD-TYPE 40 166 136
'DIAPH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S9692.  Gene #939: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DIAPH2 MUTATED 3 2 8
DIAPH2 WILD-TYPE 59 71 67
'DIAPH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S9693.  Gene #939: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DIAPH2 MUTATED 4 6 7
DIAPH2 WILD-TYPE 66 114 93
'DIAPH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S9694.  Gene #939: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DIAPH2 MUTATED 3 1 1 1 0 4 2 3 2
DIAPH2 WILD-TYPE 38 25 29 28 39 65 18 11 20
'DIAPH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S9695.  Gene #939: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DIAPH2 MUTATED 4 2 7 8
DIAPH2 WILD-TYPE 96 70 65 113
'DIAPH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0657 (Fisher's exact test), Q value = 0.28

Table S9696.  Gene #939: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DIAPH2 MUTATED 6 4 3 3 5
DIAPH2 WILD-TYPE 53 71 71 116 33
'DIAPH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S9697.  Gene #939: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DIAPH2 MUTATED 3 5 4 2 6
DIAPH2 WILD-TYPE 48 71 57 69 89
'DIAPH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S9698.  Gene #939: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DIAPH2 MUTATED 4 4 2 0 5 0 0 4 1
DIAPH2 WILD-TYPE 65 44 37 16 48 20 21 34 49
'DIAPH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.79

Table S9699.  Gene #939: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DIAPH2 MUTATED 1 1 0 1 2 2
DIAPH2 WILD-TYPE 12 15 14 10 9 7
'DIAPH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S9700.  Gene #939: 'DIAPH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DIAPH2 MUTATED 2 0 2 1 0 0 2 0 0
DIAPH2 WILD-TYPE 9 7 5 8 8 7 9 9 5
'FBXO34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 0.2

Table S9701.  Gene #940: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FBXO34 MUTATED 1 1 7
FBXO34 WILD-TYPE 41 172 140

Figure S2688.  Get High-res Image Gene #940: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FBXO34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S9702.  Gene #940: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FBXO34 MUTATED 2 1 5
FBXO34 WILD-TYPE 60 72 70
'FBXO34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S9703.  Gene #940: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FBXO34 MUTATED 0 4 4
FBXO34 WILD-TYPE 70 116 96
'FBXO34 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.53

Table S9704.  Gene #940: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FBXO34 MUTATED 0 1 0 2 0 5 0 0 0
FBXO34 WILD-TYPE 41 25 30 27 39 64 20 14 22
'FBXO34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.3

Table S9705.  Gene #940: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FBXO34 MUTATED 2 5 1 1
FBXO34 WILD-TYPE 98 67 71 120
'FBXO34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0587 (Fisher's exact test), Q value = 0.26

Table S9706.  Gene #940: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FBXO34 MUTATED 0 4 4 1 0
FBXO34 WILD-TYPE 59 71 70 118 38
'FBXO34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S9707.  Gene #940: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FBXO34 MUTATED 1 5 0 1 2
FBXO34 WILD-TYPE 50 71 61 70 93
'FBXO34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.14

Table S9708.  Gene #940: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FBXO34 MUTATED 3 1 0 3 0 0 1 0 1
FBXO34 WILD-TYPE 66 47 39 13 53 20 20 38 49

Figure S2689.  Get High-res Image Gene #940: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SCN4A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S9709.  Gene #941: 'SCN4A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SCN4A MUTATED 4 0 2 0 0
SCN4A WILD-TYPE 28 18 44 27 23
'SCN4A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0848 (Fisher's exact test), Q value = 0.32

Table S9710.  Gene #941: 'SCN4A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SCN4A MUTATED 4 2 0
SCN4A WILD-TYPE 39 65 36
'SCN4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.14

Table S9711.  Gene #941: 'SCN4A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SCN4A MUTATED 3 5 15
SCN4A WILD-TYPE 39 168 132

Figure S2690.  Get High-res Image Gene #941: 'SCN4A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SCN4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S9712.  Gene #941: 'SCN4A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SCN4A MUTATED 7 3 7
SCN4A WILD-TYPE 55 70 68
'SCN4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S9713.  Gene #941: 'SCN4A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SCN4A MUTATED 3 7 9
SCN4A WILD-TYPE 67 113 91
'SCN4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S9714.  Gene #941: 'SCN4A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SCN4A MUTATED 2 1 1 1 5 8 0 0 1
SCN4A WILD-TYPE 39 25 29 28 34 61 20 14 21
'SCN4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.88

Table S9715.  Gene #941: 'SCN4A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SCN4A MUTATED 4 6 6 7
SCN4A WILD-TYPE 96 66 66 114
'SCN4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00385 (Fisher's exact test), Q value = 0.055

Table S9716.  Gene #941: 'SCN4A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SCN4A MUTATED 2 4 10 2 5
SCN4A WILD-TYPE 57 71 64 117 33

Figure S2691.  Get High-res Image Gene #941: 'SCN4A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SCN4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S9717.  Gene #941: 'SCN4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SCN4A MUTATED 2 8 3 1 9
SCN4A WILD-TYPE 49 68 58 70 86
'SCN4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00663 (Fisher's exact test), Q value = 0.076

Table S9718.  Gene #941: 'SCN4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SCN4A MUTATED 2 7 2 1 0 1 0 7 3
SCN4A WILD-TYPE 67 41 37 15 53 19 21 31 47

Figure S2692.  Get High-res Image Gene #941: 'SCN4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SCN4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S9719.  Gene #941: 'SCN4A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SCN4A MUTATED 1 1 0 0 2 0
SCN4A WILD-TYPE 12 15 14 11 9 9
'SCN4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 0.99

Table S9720.  Gene #941: 'SCN4A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SCN4A MUTATED 0 0 0 1 0 0 2 1 0
SCN4A WILD-TYPE 11 7 7 8 8 7 9 8 5
'SATB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S9721.  Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SATB1 MUTATED 2 5 8
SATB1 WILD-TYPE 40 168 139
'SATB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9722.  Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SATB1 MUTATED 4 5 5
SATB1 WILD-TYPE 58 68 70
'SATB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.095

Table S9723.  Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SATB1 MUTATED 0 5 10
SATB1 WILD-TYPE 70 115 90

Figure S2693.  Get High-res Image Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SATB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S9724.  Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SATB1 MUTATED 0 2 0 3 0 9 1 0 0
SATB1 WILD-TYPE 41 24 30 26 39 60 19 14 22

Figure S2694.  Get High-res Image Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'SATB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 0.22

Table S9725.  Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SATB1 MUTATED 6 6 3 1
SATB1 WILD-TYPE 94 66 69 120

Figure S2695.  Get High-res Image Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SATB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00153 (Fisher's exact test), Q value = 0.032

Table S9726.  Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SATB1 MUTATED 0 6 8 1 1
SATB1 WILD-TYPE 59 69 66 118 37

Figure S2696.  Get High-res Image Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SATB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00045 (Fisher's exact test), Q value = 0.015

Table S9727.  Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SATB1 MUTATED 2 11 1 1 1
SATB1 WILD-TYPE 49 65 60 70 94

Figure S2697.  Get High-res Image Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SATB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S9728.  Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SATB1 MUTATED 5 2 1 4 1 1 1 1 0
SATB1 WILD-TYPE 64 46 38 12 52 19 20 37 50

Figure S2698.  Get High-res Image Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SATB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.16

Table S9729.  Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SATB1 MUTATED 0 0 1 0 3 0
SATB1 WILD-TYPE 13 16 13 11 8 9

Figure S2699.  Get High-res Image Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SATB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.53

Table S9730.  Gene #942: 'SATB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SATB1 MUTATED 0 0 0 2 0 0 2 0 0
SATB1 WILD-TYPE 11 7 7 7 8 7 9 9 5
'ZNF334 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S9731.  Gene #943: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF334 MUTATED 4 0 1 2 0
ZNF334 WILD-TYPE 28 18 45 25 23
'ZNF334 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S9732.  Gene #943: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF334 MUTATED 4 2 1
ZNF334 WILD-TYPE 39 65 35
'ZNF334 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0683 (Fisher's exact test), Q value = 0.28

Table S9733.  Gene #943: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF334 MUTATED 0 7 12
ZNF334 WILD-TYPE 42 166 135
'ZNF334 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 0.17

Table S9734.  Gene #943: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF334 MUTATED 8 2 2
ZNF334 WILD-TYPE 54 71 73

Figure S2700.  Get High-res Image Gene #943: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZNF334 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S9735.  Gene #943: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF334 MUTATED 1 6 8
ZNF334 WILD-TYPE 69 114 92
'ZNF334 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S9736.  Gene #943: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF334 MUTATED 2 2 1 2 2 4 2 0 0
ZNF334 WILD-TYPE 39 24 29 27 37 65 18 14 22
'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S9737.  Gene #943: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF334 MUTATED 2 3 6 8
ZNF334 WILD-TYPE 98 69 66 113
'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S9738.  Gene #943: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF334 MUTATED 4 3 3 5 4
ZNF334 WILD-TYPE 55 72 71 114 34
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.92

Table S9739.  Gene #943: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF334 MUTATED 1 4 3 3 8
ZNF334 WILD-TYPE 50 72 58 68 87
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S9740.  Gene #943: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF334 MUTATED 3 4 2 0 1 2 0 5 2
ZNF334 WILD-TYPE 66 44 37 16 52 18 21 33 48
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.98

Table S9741.  Gene #943: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF334 MUTATED 0 1 2 1 0 1
ZNF334 WILD-TYPE 13 15 12 10 11 8
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.94

Table S9742.  Gene #943: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF334 MUTATED 2 0 0 0 0 0 2 1 0
ZNF334 WILD-TYPE 9 7 7 9 8 7 9 8 5
'NCAPD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.98

Table S9743.  Gene #944: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NCAPD3 MUTATED 2 1 1 1 0
NCAPD3 WILD-TYPE 30 17 45 26 23
'NCAPD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S9744.  Gene #944: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NCAPD3 MUTATED 3 2 0
NCAPD3 WILD-TYPE 40 65 36
'NCAPD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00271 (Fisher's exact test), Q value = 0.044

Table S9745.  Gene #944: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NCAPD3 MUTATED 0 7 18
NCAPD3 WILD-TYPE 42 166 129

Figure S2701.  Get High-res Image Gene #944: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NCAPD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S9746.  Gene #944: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NCAPD3 MUTATED 7 4 10
NCAPD3 WILD-TYPE 55 69 65
'NCAPD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S9747.  Gene #944: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NCAPD3 MUTATED 4 11 8
NCAPD3 WILD-TYPE 66 109 92
'NCAPD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S9748.  Gene #944: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NCAPD3 MUTATED 3 2 3 2 3 6 3 0 1
NCAPD3 WILD-TYPE 38 24 27 27 36 63 17 14 21
'NCAPD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.53

Table S9749.  Gene #944: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NCAPD3 MUTATED 5 9 5 6
NCAPD3 WILD-TYPE 95 63 67 115
'NCAPD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S9750.  Gene #944: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NCAPD3 MUTATED 3 6 10 4 2
NCAPD3 WILD-TYPE 56 69 64 115 36
'NCAPD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.098

Table S9751.  Gene #944: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NCAPD3 MUTATED 4 12 2 1 6
NCAPD3 WILD-TYPE 47 64 59 70 89

Figure S2702.  Get High-res Image Gene #944: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NCAPD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S9752.  Gene #944: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NCAPD3 MUTATED 7 4 1 4 2 2 1 1 3
NCAPD3 WILD-TYPE 62 44 38 12 51 18 20 37 47
'NCAPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 0.31

Table S9753.  Gene #944: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NCAPD3 MUTATED 2 0 1 0 3 0
NCAPD3 WILD-TYPE 11 16 13 11 8 9
'NCAPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S9754.  Gene #944: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NCAPD3 MUTATED 0 0 0 1 2 0 1 1 1
NCAPD3 WILD-TYPE 11 7 7 8 6 7 10 8 4
'KLF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.89

Table S9755.  Gene #945: 'KLF5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KLF5 MUTATED 2 4 5
KLF5 WILD-TYPE 40 169 142
'KLF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S9756.  Gene #945: 'KLF5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KLF5 MUTATED 3 4 3
KLF5 WILD-TYPE 59 69 72
'KLF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.25

Table S9757.  Gene #945: 'KLF5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KLF5 MUTATED 0 4 7
KLF5 WILD-TYPE 70 116 93
'KLF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S9758.  Gene #945: 'KLF5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KLF5 MUTATED 0 0 1 1 0 7 1 1 0
KLF5 WILD-TYPE 41 26 29 28 39 62 19 13 22
'KLF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S9759.  Gene #945: 'KLF5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KLF5 MUTATED 5 3 2 1
KLF5 WILD-TYPE 95 69 70 120
'KLF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S9760.  Gene #945: 'KLF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KLF5 MUTATED 1 4 5 0 1
KLF5 WILD-TYPE 58 71 69 119 37

Figure S2703.  Get High-res Image Gene #945: 'KLF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KLF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S9761.  Gene #945: 'KLF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KLF5 MUTATED 3 2 3 2 0
KLF5 WILD-TYPE 48 74 58 69 95
'KLF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S9762.  Gene #945: 'KLF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KLF5 MUTATED 3 3 1 1 2 0 0 0 0
KLF5 WILD-TYPE 66 45 38 15 51 20 21 38 50
'DSC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.076 (Fisher's exact test), Q value = 0.3

Table S9763.  Gene #946: 'DSC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DSC2 MUTATED 3 3 8
DSC2 WILD-TYPE 39 170 139
'DSC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S9764.  Gene #946: 'DSC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DSC2 MUTATED 5 2 5
DSC2 WILD-TYPE 57 71 70
'DSC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.27

Table S9765.  Gene #946: 'DSC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DSC2 MUTATED 0 6 7
DSC2 WILD-TYPE 70 114 93
'DSC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S9766.  Gene #946: 'DSC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DSC2 MUTATED 1 1 0 3 1 6 0 1 0
DSC2 WILD-TYPE 40 25 30 26 38 63 20 13 22
'DSC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S9767.  Gene #946: 'DSC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DSC2 MUTATED 3 5 4 2
DSC2 WILD-TYPE 97 67 68 119
'DSC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S9768.  Gene #946: 'DSC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DSC2 MUTATED 2 5 4 1 2
DSC2 WILD-TYPE 57 70 70 118 36
'DSC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S9769.  Gene #946: 'DSC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DSC2 MUTATED 4 4 2 0 3
DSC2 WILD-TYPE 47 72 59 71 92
'DSC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S9770.  Gene #946: 'DSC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DSC2 MUTATED 0 3 1 2 3 1 0 2 1
DSC2 WILD-TYPE 69 45 38 14 50 19 21 36 49
'DSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.1

Table S9771.  Gene #946: 'DSC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DSC2 MUTATED 0 0 0 1 3 0
DSC2 WILD-TYPE 13 16 14 10 8 9

Figure S2704.  Get High-res Image Gene #946: 'DSC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S9772.  Gene #946: 'DSC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DSC2 MUTATED 0 0 0 1 0 1 2 0 0
DSC2 WILD-TYPE 11 7 7 8 8 6 9 9 5
'NUPL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S9773.  Gene #947: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NUPL2 MUTATED 2 0 0 2 0
NUPL2 WILD-TYPE 30 18 46 25 23
'NUPL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S9774.  Gene #947: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NUPL2 MUTATED 2 2 0
NUPL2 WILD-TYPE 41 65 36
'NUPL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S9775.  Gene #947: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NUPL2 MUTATED 1 2 7
NUPL2 WILD-TYPE 41 171 140
'NUPL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.62

Table S9776.  Gene #947: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NUPL2 MUTATED 4 1 2
NUPL2 WILD-TYPE 58 72 73
'NUPL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S9777.  Gene #947: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NUPL2 MUTATED 1 4 5
NUPL2 WILD-TYPE 69 116 95
'NUPL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S9778.  Gene #947: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NUPL2 MUTATED 2 1 3 0 0 2 1 0 1
NUPL2 WILD-TYPE 39 25 27 29 39 67 19 14 21
'NUPL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S9779.  Gene #947: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NUPL2 MUTATED 2 2 2 5
NUPL2 WILD-TYPE 98 70 70 116
'NUPL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S9780.  Gene #947: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NUPL2 MUTATED 1 1 4 3 2
NUPL2 WILD-TYPE 58 74 70 116 36
'NUPL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.98

Table S9781.  Gene #947: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NUPL2 MUTATED 0 3 2 1 3
NUPL2 WILD-TYPE 51 73 59 70 92
'NUPL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 0.78

Table S9782.  Gene #947: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NUPL2 MUTATED 1 3 1 1 0 1 0 1 1
NUPL2 WILD-TYPE 68 45 38 15 53 19 21 37 49
'NUPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S9783.  Gene #947: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NUPL2 MUTATED 1 1 0 0 1 1
NUPL2 WILD-TYPE 12 15 14 11 10 8
'NUPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S9784.  Gene #947: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NUPL2 MUTATED 1 0 1 0 0 0 1 1 0
NUPL2 WILD-TYPE 10 7 6 9 8 7 10 8 5
'ZSWIM3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.74

Table S9785.  Gene #948: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZSWIM3 MUTATED 3 0 1 1 0
ZSWIM3 WILD-TYPE 29 18 45 26 23
'ZSWIM3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S9786.  Gene #948: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZSWIM3 MUTATED 3 1 1
ZSWIM3 WILD-TYPE 40 66 35
'ZSWIM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0695 (Fisher's exact test), Q value = 0.28

Table S9787.  Gene #948: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZSWIM3 MUTATED 0 3 9
ZSWIM3 WILD-TYPE 42 170 138
'ZSWIM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S9788.  Gene #948: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZSWIM3 MUTATED 1 1 5
ZSWIM3 WILD-TYPE 61 72 70
'ZSWIM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.76

Table S9789.  Gene #948: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZSWIM3 MUTATED 2 2 5
ZSWIM3 WILD-TYPE 68 118 95
'ZSWIM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S9790.  Gene #948: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZSWIM3 MUTATED 1 0 1 1 1 5 0 0 0
ZSWIM3 WILD-TYPE 40 26 29 28 38 64 20 14 22
'ZSWIM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S9791.  Gene #948: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZSWIM3 MUTATED 2 4 1 5
ZSWIM3 WILD-TYPE 98 68 71 116
'ZSWIM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.95

Table S9792.  Gene #948: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZSWIM3 MUTATED 1 2 4 3 2
ZSWIM3 WILD-TYPE 58 73 70 116 36
'ZSWIM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.63

Table S9793.  Gene #948: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZSWIM3 MUTATED 0 4 1 1 5
ZSWIM3 WILD-TYPE 51 72 60 70 90
'ZSWIM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.094 (Fisher's exact test), Q value = 0.33

Table S9794.  Gene #948: 'ZSWIM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZSWIM3 MUTATED 3 1 0 2 1 2 0 2 0
ZSWIM3 WILD-TYPE 66 47 39 14 52 18 21 36 50
'C5ORF34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S9795.  Gene #949: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C5ORF34 MUTATED 1 2 6
C5ORF34 WILD-TYPE 41 171 141
'C5ORF34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S9796.  Gene #949: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C5ORF34 MUTATED 3 1 4
C5ORF34 WILD-TYPE 59 72 71
'C5ORF34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.1

Table S9797.  Gene #949: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C5ORF34 MUTATED 0 2 8
C5ORF34 WILD-TYPE 70 118 92

Figure S2705.  Get High-res Image Gene #949: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C5ORF34 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.55

Table S9798.  Gene #949: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C5ORF34 MUTATED 1 0 0 1 0 6 1 1 0
C5ORF34 WILD-TYPE 40 26 30 28 39 63 19 13 22
'C5ORF34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.5

Table S9799.  Gene #949: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C5ORF34 MUTATED 1 4 3 2
C5ORF34 WILD-TYPE 99 68 69 119
'C5ORF34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00454 (Fisher's exact test), Q value = 0.062

Table S9800.  Gene #949: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C5ORF34 MUTATED 1 1 6 0 2
C5ORF34 WILD-TYPE 58 74 68 119 36

Figure S2706.  Get High-res Image Gene #949: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C5ORF34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S9801.  Gene #949: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C5ORF34 MUTATED 1 4 3 0 1
C5ORF34 WILD-TYPE 50 72 58 71 94
'C5ORF34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S9802.  Gene #949: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C5ORF34 MUTATED 0 4 0 3 0 1 0 1 0
C5ORF34 WILD-TYPE 69 44 39 13 53 19 21 37 50

Figure S2707.  Get High-res Image Gene #949: 'C5ORF34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'YSK4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00822 (Fisher's exact test), Q value = 0.085

Table S9803.  Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
YSK4 MUTATED 5 0 0 2 0
YSK4 WILD-TYPE 27 18 46 25 23

Figure S2708.  Get High-res Image Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'YSK4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00521 (Fisher's exact test), Q value = 0.068

Table S9804.  Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
YSK4 MUTATED 6 1 0
YSK4 WILD-TYPE 37 66 36

Figure S2709.  Get High-res Image Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'YSK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00933 (Fisher's exact test), Q value = 0.091

Table S9805.  Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
YSK4 MUTATED 1 7 18
YSK4 WILD-TYPE 41 166 129

Figure S2710.  Get High-res Image Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'YSK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S9806.  Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
YSK4 MUTATED 6 6 7
YSK4 WILD-TYPE 56 67 68
'YSK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0408 (Fisher's exact test), Q value = 0.21

Table S9807.  Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
YSK4 MUTATED 1 11 11
YSK4 WILD-TYPE 69 109 89

Figure S2711.  Get High-res Image Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'YSK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.65

Table S9808.  Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
YSK4 MUTATED 2 0 3 2 3 11 1 0 1
YSK4 WILD-TYPE 39 26 27 27 36 58 19 14 21
'YSK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S9809.  Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
YSK4 MUTATED 6 6 6 8
YSK4 WILD-TYPE 94 66 66 113
'YSK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00314 (Fisher's exact test), Q value = 0.049

Table S9810.  Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
YSK4 MUTATED 2 9 7 2 6
YSK4 WILD-TYPE 57 66 67 117 32

Figure S2712.  Get High-res Image Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'YSK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S9811.  Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
YSK4 MUTATED 3 9 4 3 6
YSK4 WILD-TYPE 48 67 57 68 89
'YSK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0623 (Fisher's exact test), Q value = 0.27

Table S9812.  Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
YSK4 MUTATED 10 3 0 2 2 2 1 4 1
YSK4 WILD-TYPE 59 45 39 14 51 18 20 34 49
'YSK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S9813.  Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
YSK4 MUTATED 1 0 2 0 2 0
YSK4 WILD-TYPE 12 16 12 11 9 9
'YSK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S9814.  Gene #950: 'YSK4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
YSK4 MUTATED 0 0 0 1 1 0 2 1 0
YSK4 WILD-TYPE 11 7 7 8 7 7 9 8 5
'CBLN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S9815.  Gene #951: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CBLN3 MUTATED 0 1 5
CBLN3 WILD-TYPE 42 172 142
'CBLN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S9816.  Gene #951: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CBLN3 MUTATED 3 0 3
CBLN3 WILD-TYPE 59 73 72
'CBLN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S9817.  Gene #951: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CBLN3 MUTATED 1 0 5
CBLN3 WILD-TYPE 69 120 95

Figure S2713.  Get High-res Image Gene #951: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CBLN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S9818.  Gene #951: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CBLN3 MUTATED 1 0 0 0 1 3 1 0 0
CBLN3 WILD-TYPE 40 26 30 29 38 66 19 14 22
'CBLN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00482 (Fisher's exact test), Q value = 0.064

Table S9819.  Gene #951: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CBLN3 MUTATED 0 4 2 0
CBLN3 WILD-TYPE 100 68 70 121

Figure S2714.  Get High-res Image Gene #951: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CBLN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 0.1

Table S9820.  Gene #951: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CBLN3 MUTATED 2 0 4 0 0
CBLN3 WILD-TYPE 57 75 70 119 38

Figure S2715.  Get High-res Image Gene #951: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CBLN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.005 (Fisher's exact test), Q value = 0.066

Table S9821.  Gene #951: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CBLN3 MUTATED 0 5 1 0 0
CBLN3 WILD-TYPE 51 71 60 71 95

Figure S2716.  Get High-res Image Gene #951: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CBLN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.55

Table S9822.  Gene #951: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CBLN3 MUTATED 3 2 0 1 0 0 0 0 0
CBLN3 WILD-TYPE 66 46 39 15 53 20 21 38 50
'GGA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0554 (Fisher's exact test), Q value = 0.25

Table S9823.  Gene #952: 'GGA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GGA2 MUTATED 5 0 1 2 0
GGA2 WILD-TYPE 27 18 45 25 23
'GGA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0616 (Fisher's exact test), Q value = 0.27

Table S9824.  Gene #952: 'GGA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GGA2 MUTATED 5 1 2
GGA2 WILD-TYPE 38 66 34
'GGA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00645 (Fisher's exact test), Q value = 0.075

Table S9825.  Gene #952: 'GGA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GGA2 MUTATED 1 1 10
GGA2 WILD-TYPE 41 172 137

Figure S2717.  Get High-res Image Gene #952: 'GGA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GGA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S9826.  Gene #952: 'GGA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GGA2 MUTATED 2 0 2
GGA2 WILD-TYPE 60 73 73
'GGA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.99

Table S9827.  Gene #952: 'GGA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GGA2 MUTATED 1 4 4
GGA2 WILD-TYPE 69 116 96
'GGA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S9828.  Gene #952: 'GGA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GGA2 MUTATED 0 1 1 1 3 3 0 0 0
GGA2 WILD-TYPE 41 25 29 28 36 66 20 14 22
'GGA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.19

Table S9829.  Gene #952: 'GGA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GGA2 MUTATED 1 3 0 8
GGA2 WILD-TYPE 99 69 72 113

Figure S2718.  Get High-res Image Gene #952: 'GGA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GGA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 0.13

Table S9830.  Gene #952: 'GGA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GGA2 MUTATED 0 1 2 4 5
GGA2 WILD-TYPE 59 74 72 115 33

Figure S2719.  Get High-res Image Gene #952: 'GGA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GGA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S9831.  Gene #952: 'GGA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GGA2 MUTATED 0 2 0 3 6
GGA2 WILD-TYPE 51 74 61 68 89
'GGA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S9832.  Gene #952: 'GGA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GGA2 MUTATED 1 0 0 1 2 1 1 2 3
GGA2 WILD-TYPE 68 48 39 15 51 19 20 36 47
'ING1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S9833.  Gene #953: 'ING1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ING1 MUTATED 2 0 1 1 0
ING1 WILD-TYPE 30 18 45 26 23
'ING1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S9834.  Gene #953: 'ING1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ING1 MUTATED 2 2 0
ING1 WILD-TYPE 41 65 36
'ING1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00871 (Fisher's exact test), Q value = 0.088

Table S9835.  Gene #953: 'ING1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ING1 MUTATED 0 1 9
ING1 WILD-TYPE 42 172 138

Figure S2720.  Get High-res Image Gene #953: 'ING1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ING1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.1

Table S9836.  Gene #953: 'ING1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ING1 MUTATED 0 0 5
ING1 WILD-TYPE 62 73 70

Figure S2721.  Get High-res Image Gene #953: 'ING1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ING1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9837.  Gene #953: 'ING1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ING1 MUTATED 2 3 2
ING1 WILD-TYPE 68 117 98
'ING1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S9838.  Gene #953: 'ING1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ING1 MUTATED 1 0 2 0 1 2 1 0 0
ING1 WILD-TYPE 40 26 28 29 38 67 19 14 22
'ING1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.19

Table S9839.  Gene #953: 'ING1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ING1 MUTATED 0 5 1 4
ING1 WILD-TYPE 100 67 71 117

Figure S2722.  Get High-res Image Gene #953: 'ING1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ING1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.041 (Fisher's exact test), Q value = 0.21

Table S9840.  Gene #953: 'ING1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ING1 MUTATED 0 0 5 3 2
ING1 WILD-TYPE 59 75 69 116 36

Figure S2723.  Get High-res Image Gene #953: 'ING1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ING1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S9841.  Gene #953: 'ING1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ING1 MUTATED 0 4 0 1 5
ING1 WILD-TYPE 51 72 61 70 90
'ING1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0241 (Fisher's exact test), Q value = 0.16

Table S9842.  Gene #953: 'ING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ING1 MUTATED 2 0 0 1 0 3 1 2 1
ING1 WILD-TYPE 67 48 39 15 53 17 20 36 49

Figure S2724.  Get High-res Image Gene #953: 'ING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LYG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S9843.  Gene #954: 'LYG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LYG1 MUTATED 0 1 5
LYG1 WILD-TYPE 42 172 142
'LYG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S9844.  Gene #954: 'LYG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LYG1 MUTATED 2 0 1
LYG1 WILD-TYPE 60 73 74
'LYG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S9845.  Gene #954: 'LYG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LYG1 MUTATED 0 2 1
LYG1 WILD-TYPE 70 118 99
'LYG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.98

Table S9846.  Gene #954: 'LYG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LYG1 MUTATED 0 1 1 0 0 1 0 0 0
LYG1 WILD-TYPE 41 25 29 29 39 68 20 14 22
'LYG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S9847.  Gene #954: 'LYG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LYG1 MUTATED 0 1 1 4
LYG1 WILD-TYPE 100 71 71 117
'LYG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S9848.  Gene #954: 'LYG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LYG1 MUTATED 0 0 2 2 2
LYG1 WILD-TYPE 59 75 72 117 36
'LYG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S9849.  Gene #954: 'LYG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LYG1 MUTATED 0 2 0 1 3
LYG1 WILD-TYPE 51 74 61 70 92
'LYG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S9850.  Gene #954: 'LYG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LYG1 MUTATED 0 1 0 1 0 0 0 2 2
LYG1 WILD-TYPE 69 47 39 15 53 20 21 36 48
'PRPF4B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9851.  Gene #955: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PRPF4B MUTATED 1 0 1 1 0
PRPF4B WILD-TYPE 31 18 45 26 23
'PRPF4B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9852.  Gene #955: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PRPF4B MUTATED 1 1 1
PRPF4B WILD-TYPE 42 66 35
'PRPF4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0923 (Fisher's exact test), Q value = 0.33

Table S9853.  Gene #955: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRPF4B MUTATED 0 5 10
PRPF4B WILD-TYPE 42 168 137
'PRPF4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S9854.  Gene #955: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRPF4B MUTATED 4 3 5
PRPF4B WILD-TYPE 58 70 70
'PRPF4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.65

Table S9855.  Gene #955: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRPF4B MUTATED 1 4 6
PRPF4B WILD-TYPE 69 116 94
'PRPF4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S9856.  Gene #955: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRPF4B MUTATED 2 1 1 0 2 5 0 0 0
PRPF4B WILD-TYPE 39 25 29 29 37 64 20 14 22
'PRPF4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S9857.  Gene #955: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRPF4B MUTATED 5 3 5 2
PRPF4B WILD-TYPE 95 69 67 119
'PRPF4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S9858.  Gene #955: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRPF4B MUTATED 1 4 6 4 0
PRPF4B WILD-TYPE 58 71 68 115 38
'PRPF4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 0.24

Table S9859.  Gene #955: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRPF4B MUTATED 1 8 2 1 2
PRPF4B WILD-TYPE 50 68 59 70 93
'PRPF4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.77

Table S9860.  Gene #955: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRPF4B MUTATED 2 4 2 2 1 1 0 1 1
PRPF4B WILD-TYPE 67 44 37 14 52 19 21 37 49
'PRPF4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S9861.  Gene #955: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PRPF4B MUTATED 1 0 1 0 2 0
PRPF4B WILD-TYPE 12 16 13 11 9 9
'PRPF4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S9862.  Gene #955: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PRPF4B MUTATED 0 0 0 0 0 2 1 1 0
PRPF4B WILD-TYPE 11 7 7 9 8 5 10 8 5
'TDRD7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 0.25

Table S9863.  Gene #956: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TDRD7 MUTATED 1 0 0 3 0
TDRD7 WILD-TYPE 31 18 46 24 23
'TDRD7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S9864.  Gene #956: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TDRD7 MUTATED 2 2 0
TDRD7 WILD-TYPE 41 65 36
'TDRD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S9865.  Gene #956: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TDRD7 MUTATED 1 4 10
TDRD7 WILD-TYPE 41 169 137
'TDRD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S9866.  Gene #956: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TDRD7 MUTATED 4 3 4
TDRD7 WILD-TYPE 58 70 71
'TDRD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S9867.  Gene #956: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TDRD7 MUTATED 3 4 8
TDRD7 WILD-TYPE 67 116 92
'TDRD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S9868.  Gene #956: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TDRD7 MUTATED 2 0 1 3 2 5 1 1 0
TDRD7 WILD-TYPE 39 26 29 26 37 64 19 13 22
'TDRD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.94

Table S9869.  Gene #956: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TDRD7 MUTATED 4 5 2 4
TDRD7 WILD-TYPE 96 67 70 117
'TDRD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0922 (Fisher's exact test), Q value = 0.33

Table S9870.  Gene #956: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TDRD7 MUTATED 3 3 5 1 3
TDRD7 WILD-TYPE 56 72 69 118 35
'TDRD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S9871.  Gene #956: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TDRD7 MUTATED 4 3 2 0 5
TDRD7 WILD-TYPE 47 73 59 71 90
'TDRD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S9872.  Gene #956: 'TDRD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TDRD7 MUTATED 4 3 0 1 1 1 0 3 1
TDRD7 WILD-TYPE 65 45 39 15 52 19 21 35 49
'ADAMTS19 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S9873.  Gene #957: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ADAMTS19 MUTATED 2 0 0 2 0
ADAMTS19 WILD-TYPE 30 18 46 25 23
'ADAMTS19 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S9874.  Gene #957: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ADAMTS19 MUTATED 3 1 0
ADAMTS19 WILD-TYPE 40 66 36
'ADAMTS19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0025 (Fisher's exact test), Q value = 0.043

Table S9875.  Gene #957: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ADAMTS19 MUTATED 0 4 15
ADAMTS19 WILD-TYPE 42 169 132

Figure S2725.  Get High-res Image Gene #957: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADAMTS19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S9876.  Gene #957: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ADAMTS19 MUTATED 6 3 5
ADAMTS19 WILD-TYPE 56 70 70
'ADAMTS19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S9877.  Gene #957: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ADAMTS19 MUTATED 2 6 10
ADAMTS19 WILD-TYPE 68 114 90
'ADAMTS19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0333 (Fisher's exact test), Q value = 0.19

Table S9878.  Gene #957: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ADAMTS19 MUTATED 2 1 1 1 0 9 4 0 0
ADAMTS19 WILD-TYPE 39 25 29 28 39 60 16 14 22

Figure S2726.  Get High-res Image Gene #957: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ADAMTS19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S9879.  Gene #957: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ADAMTS19 MUTATED 3 7 5 4
ADAMTS19 WILD-TYPE 97 65 67 117
'ADAMTS19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.22

Table S9880.  Gene #957: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ADAMTS19 MUTATED 4 5 6 1 3
ADAMTS19 WILD-TYPE 55 70 68 118 35

Figure S2727.  Get High-res Image Gene #957: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ADAMTS19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.96

Table S9881.  Gene #957: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ADAMTS19 MUTATED 3 6 2 2 5
ADAMTS19 WILD-TYPE 48 70 59 69 90
'ADAMTS19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S9882.  Gene #957: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ADAMTS19 MUTATED 3 3 0 2 4 2 1 2 1
ADAMTS19 WILD-TYPE 66 45 39 14 49 18 20 36 49
'ADAMTS19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9883.  Gene #957: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ADAMTS19 MUTATED 1 1 1 1 0 0
ADAMTS19 WILD-TYPE 12 15 13 10 11 9
'ADAMTS19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S9884.  Gene #957: 'ADAMTS19 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ADAMTS19 MUTATED 1 0 0 1 0 1 1 0 0
ADAMTS19 WILD-TYPE 10 7 7 8 8 6 10 9 5
'MALT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S9885.  Gene #958: 'MALT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MALT1 MUTATED 4 0 0 2 0
MALT1 WILD-TYPE 28 18 46 25 23

Figure S2728.  Get High-res Image Gene #958: 'MALT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MALT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S9886.  Gene #958: 'MALT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MALT1 MUTATED 5 1 0
MALT1 WILD-TYPE 38 66 36

Figure S2729.  Get High-res Image Gene #958: 'MALT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MALT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S9887.  Gene #958: 'MALT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MALT1 MUTATED 0 3 7
MALT1 WILD-TYPE 42 170 140
'MALT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.93

Table S9888.  Gene #958: 'MALT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MALT1 MUTATED 1 1 3
MALT1 WILD-TYPE 61 72 72
'MALT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.96

Table S9889.  Gene #958: 'MALT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MALT1 MUTATED 2 3 1
MALT1 WILD-TYPE 68 117 99
'MALT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 0.75

Table S9890.  Gene #958: 'MALT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MALT1 MUTATED 1 0 1 1 2 0 1 0 0
MALT1 WILD-TYPE 40 26 29 28 37 69 19 14 22
'MALT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.77

Table S9891.  Gene #958: 'MALT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MALT1 MUTATED 1 2 2 6
MALT1 WILD-TYPE 99 70 70 115
'MALT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00791 (Fisher's exact test), Q value = 0.084

Table S9892.  Gene #958: 'MALT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MALT1 MUTATED 2 1 2 1 5
MALT1 WILD-TYPE 57 74 72 118 33

Figure S2730.  Get High-res Image Gene #958: 'MALT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MALT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S9893.  Gene #958: 'MALT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MALT1 MUTATED 1 1 1 1 7
MALT1 WILD-TYPE 50 75 60 70 88
'MALT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 0.16

Table S9894.  Gene #958: 'MALT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MALT1 MUTATED 3 0 0 0 1 1 1 5 0
MALT1 WILD-TYPE 66 48 39 16 52 19 20 33 50

Figure S2731.  Get High-res Image Gene #958: 'MALT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'JMJD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.32

Table S9895.  Gene #959: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
JMJD6 MUTATED 1 1 6
JMJD6 WILD-TYPE 41 172 141
'JMJD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S9896.  Gene #959: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
JMJD6 MUTATED 2 0 4
JMJD6 WILD-TYPE 60 73 71
'JMJD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9897.  Gene #959: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
JMJD6 MUTATED 2 3 2
JMJD6 WILD-TYPE 68 117 98
'JMJD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S9898.  Gene #959: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
JMJD6 MUTATED 1 0 2 0 1 2 1 0 0
JMJD6 WILD-TYPE 40 26 28 29 38 67 19 14 22
'JMJD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S9899.  Gene #959: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
JMJD6 MUTATED 0 3 3 2
JMJD6 WILD-TYPE 100 69 69 119
'JMJD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S9900.  Gene #959: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
JMJD6 MUTATED 2 1 3 1 1
JMJD6 WILD-TYPE 57 74 71 118 37
'JMJD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S9901.  Gene #959: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
JMJD6 MUTATED 1 3 2 0 2
JMJD6 WILD-TYPE 50 73 59 71 93
'JMJD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S9902.  Gene #959: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
JMJD6 MUTATED 0 1 0 2 2 2 0 1 0
JMJD6 WILD-TYPE 69 47 39 14 51 18 21 37 50

Figure S2732.  Get High-res Image Gene #959: 'JMJD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'THUMPD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 0.33

Table S9903.  Gene #960: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
THUMPD3 MUTATED 2 2 7
THUMPD3 WILD-TYPE 40 171 140
'THUMPD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0729 (Fisher's exact test), Q value = 0.29

Table S9904.  Gene #960: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
THUMPD3 MUTATED 6 1 2
THUMPD3 WILD-TYPE 56 72 73
'THUMPD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.14

Table S9905.  Gene #960: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
THUMPD3 MUTATED 0 3 8
THUMPD3 WILD-TYPE 70 117 92

Figure S2733.  Get High-res Image Gene #960: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'THUMPD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.76

Table S9906.  Gene #960: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
THUMPD3 MUTATED 4 0 2 1 0 3 1 0 0
THUMPD3 WILD-TYPE 37 26 28 28 39 66 19 14 22
'THUMPD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.11

Table S9907.  Gene #960: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
THUMPD3 MUTATED 0 5 4 2
THUMPD3 WILD-TYPE 100 67 68 119

Figure S2734.  Get High-res Image Gene #960: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'THUMPD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.34

Table S9908.  Gene #960: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
THUMPD3 MUTATED 3 1 5 1 1
THUMPD3 WILD-TYPE 56 74 69 118 37
'THUMPD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S9909.  Gene #960: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
THUMPD3 MUTATED 1 4 3 0 2
THUMPD3 WILD-TYPE 50 72 58 71 93
'THUMPD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0575 (Fisher's exact test), Q value = 0.26

Table S9910.  Gene #960: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
THUMPD3 MUTATED 2 4 0 1 0 2 0 0 1
THUMPD3 WILD-TYPE 67 44 39 15 53 18 21 38 49
'THUMPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S9911.  Gene #960: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
THUMPD3 MUTATED 0 2 0 1 0 0
THUMPD3 WILD-TYPE 13 14 14 10 11 9
'THUMPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S9912.  Gene #960: 'THUMPD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
THUMPD3 MUTATED 2 0 1 0 0 0 0 0 0
THUMPD3 WILD-TYPE 9 7 6 9 8 7 11 9 5
'STAU2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0533 (Fisher's exact test), Q value = 0.25

Table S9913.  Gene #961: 'STAU2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
STAU2 MUTATED 3 0 0 0 0
STAU2 WILD-TYPE 29 18 46 27 23
'STAU2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S9914.  Gene #961: 'STAU2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
STAU2 MUTATED 2 0 1
STAU2 WILD-TYPE 41 67 35
'STAU2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00816 (Fisher's exact test), Q value = 0.085

Table S9915.  Gene #961: 'STAU2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STAU2 MUTATED 0 1 9
STAU2 WILD-TYPE 42 172 138

Figure S2735.  Get High-res Image Gene #961: 'STAU2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STAU2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S9916.  Gene #961: 'STAU2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STAU2 MUTATED 3 0 4
STAU2 WILD-TYPE 59 73 71
'STAU2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S9917.  Gene #961: 'STAU2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STAU2 MUTATED 1 1 5
STAU2 WILD-TYPE 69 119 95
'STAU2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S9918.  Gene #961: 'STAU2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STAU2 MUTATED 2 0 0 0 0 4 0 1 0
STAU2 WILD-TYPE 39 26 30 29 39 65 20 13 22
'STAU2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.84

Table S9919.  Gene #961: 'STAU2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STAU2 MUTATED 1 3 3 3
STAU2 WILD-TYPE 99 69 69 118
'STAU2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.84

Table S9920.  Gene #961: 'STAU2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STAU2 MUTATED 2 1 4 2 1
STAU2 WILD-TYPE 57 74 70 117 37
'STAU2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S9921.  Gene #961: 'STAU2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STAU2 MUTATED 0 4 2 2 1
STAU2 WILD-TYPE 51 72 59 69 94
'STAU2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S9922.  Gene #961: 'STAU2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STAU2 MUTATED 1 3 1 1 1 0 0 1 1
STAU2 WILD-TYPE 68 45 38 15 52 20 21 37 49
'STAU2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S9923.  Gene #961: 'STAU2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
STAU2 MUTATED 0 1 0 1 1 0
STAU2 WILD-TYPE 13 15 14 10 10 9
'STAU2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.21

Table S9924.  Gene #961: 'STAU2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
STAU2 MUTATED 0 0 0 0 0 0 3 0 0
STAU2 WILD-TYPE 11 7 7 9 8 7 8 9 5

Figure S2736.  Get High-res Image Gene #961: 'STAU2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA1797 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.95

Table S9925.  Gene #962: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIAA1797 MUTATED 1 0 1 2 0
KIAA1797 WILD-TYPE 31 18 45 25 23
'KIAA1797 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S9926.  Gene #962: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIAA1797 MUTATED 3 1 0
KIAA1797 WILD-TYPE 40 66 36
'KIAA1797 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S9927.  Gene #962: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA1797 MUTATED 2 4 14
KIAA1797 WILD-TYPE 40 169 133

Figure S2737.  Get High-res Image Gene #962: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA1797 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S9928.  Gene #962: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA1797 MUTATED 4 3 9
KIAA1797 WILD-TYPE 58 70 66
'KIAA1797 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.98

Table S9929.  Gene #962: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA1797 MUTATED 3 8 8
KIAA1797 WILD-TYPE 67 112 92
'KIAA1797 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S9930.  Gene #962: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA1797 MUTATED 3 0 1 3 2 6 2 2 0
KIAA1797 WILD-TYPE 38 26 29 26 37 63 18 12 22
'KIAA1797 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00965 (Fisher's exact test), Q value = 0.093

Table S9931.  Gene #962: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA1797 MUTATED 3 10 4 3
KIAA1797 WILD-TYPE 97 62 68 118

Figure S2738.  Get High-res Image Gene #962: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIAA1797 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.094

Table S9932.  Gene #962: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA1797 MUTATED 2 6 8 1 3
KIAA1797 WILD-TYPE 57 69 66 118 35

Figure S2739.  Get High-res Image Gene #962: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA1797 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.55

Table S9933.  Gene #962: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA1797 MUTATED 4 6 4 1 3
KIAA1797 WILD-TYPE 47 70 57 70 92
'KIAA1797 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.54

Table S9934.  Gene #962: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA1797 MUTATED 5 4 0 2 1 2 1 2 1
KIAA1797 WILD-TYPE 64 44 39 14 52 18 20 36 49
'KIAA1797 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S9935.  Gene #962: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIAA1797 MUTATED 0 1 1 0 1 0
KIAA1797 WILD-TYPE 13 15 13 11 10 9
'KIAA1797 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S9936.  Gene #962: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIAA1797 MUTATED 0 0 0 1 1 0 1 0 0
KIAA1797 WILD-TYPE 11 7 7 8 7 7 10 9 5
'MKI67 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S9937.  Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MKI67 MUTATED 14 0 0 2 0
MKI67 WILD-TYPE 18 18 46 25 23

Figure S2740.  Get High-res Image Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MKI67 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S9938.  Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MKI67 MUTATED 14 1 1
MKI67 WILD-TYPE 29 66 35

Figure S2741.  Get High-res Image Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MKI67 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0072

Table S9939.  Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MKI67 MUTATED 1 8 26
MKI67 WILD-TYPE 41 165 121

Figure S2742.  Get High-res Image Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MKI67 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S9940.  Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MKI67 MUTATED 8 6 7
MKI67 WILD-TYPE 54 67 68
'MKI67 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0037 (Fisher's exact test), Q value = 0.054

Table S9941.  Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MKI67 MUTATED 1 12 16
MKI67 WILD-TYPE 69 108 84

Figure S2743.  Get High-res Image Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MKI67 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0629 (Fisher's exact test), Q value = 0.27

Table S9942.  Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MKI67 MUTATED 0 2 2 3 5 10 5 0 2
MKI67 WILD-TYPE 41 24 28 26 34 59 15 14 20
'MKI67 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S9943.  Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MKI67 MUTATED 5 6 9 16
MKI67 WILD-TYPE 95 66 63 105
'MKI67 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S9944.  Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MKI67 MUTATED 3 6 10 4 13
MKI67 WILD-TYPE 56 69 64 115 25

Figure S2744.  Get High-res Image Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MKI67 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00282 (Fisher's exact test), Q value = 0.046

Table S9945.  Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MKI67 MUTATED 4 13 2 1 12
MKI67 WILD-TYPE 47 63 59 70 83

Figure S2745.  Get High-res Image Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MKI67 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S9946.  Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MKI67 MUTATED 3 6 3 4 3 3 1 8 1
MKI67 WILD-TYPE 66 42 36 12 50 17 20 30 49

Figure S2746.  Get High-res Image Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MKI67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.25

Table S9947.  Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MKI67 MUTATED 0 1 1 1 4 0
MKI67 WILD-TYPE 13 15 13 10 7 9
'MKI67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S9948.  Gene #963: 'MKI67 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MKI67 MUTATED 0 1 0 2 1 0 2 1 0
MKI67 WILD-TYPE 11 6 7 7 7 7 9 8 5
'HAUS6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.65

Table S9949.  Gene #964: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HAUS6 MUTATED 2 0 0 1 1
HAUS6 WILD-TYPE 30 18 46 26 22
'HAUS6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0514 (Fisher's exact test), Q value = 0.24

Table S9950.  Gene #964: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HAUS6 MUTATED 3 0 1
HAUS6 WILD-TYPE 40 67 35
'HAUS6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.45

Table S9951.  Gene #964: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HAUS6 MUTATED 1 3 8
HAUS6 WILD-TYPE 41 170 139
'HAUS6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S9952.  Gene #964: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HAUS6 MUTATED 2 2 4
HAUS6 WILD-TYPE 60 71 71
'HAUS6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.99

Table S9953.  Gene #964: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HAUS6 MUTATED 1 4 4
HAUS6 WILD-TYPE 69 116 96
'HAUS6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S9954.  Gene #964: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HAUS6 MUTATED 0 0 0 3 2 3 0 0 1
HAUS6 WILD-TYPE 41 26 30 26 37 66 20 14 21
'HAUS6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S9955.  Gene #964: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HAUS6 MUTATED 3 3 1 5
HAUS6 WILD-TYPE 97 69 71 116
'HAUS6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S9956.  Gene #964: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HAUS6 MUTATED 0 4 3 3 2
HAUS6 WILD-TYPE 59 71 71 116 36
'HAUS6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.75

Table S9957.  Gene #964: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HAUS6 MUTATED 1 3 0 4 4
HAUS6 WILD-TYPE 50 73 61 67 91
'HAUS6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.95

Table S9958.  Gene #964: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HAUS6 MUTATED 2 1 1 2 1 0 1 2 2
HAUS6 WILD-TYPE 67 47 38 14 52 20 20 36 48
'DNAH6 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S9959.  Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DNAH6 MUTATED 2 1 17
DNAH6 WILD-TYPE 40 172 130

Figure S2747.  Get High-res Image Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNAH6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S9960.  Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DNAH6 MUTATED 10 0 9
DNAH6 WILD-TYPE 52 73 66

Figure S2748.  Get High-res Image Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DNAH6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.24

Table S9961.  Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DNAH6 MUTATED 5 3 10
DNAH6 WILD-TYPE 65 117 90
'DNAH6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.88

Table S9962.  Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DNAH6 MUTATED 3 2 0 1 1 8 1 1 1
DNAH6 WILD-TYPE 38 24 30 28 38 61 19 13 21
'DNAH6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00171 (Fisher's exact test), Q value = 0.034

Table S9963.  Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DNAH6 MUTATED 2 8 8 2
DNAH6 WILD-TYPE 98 64 64 119

Figure S2749.  Get High-res Image Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DNAH6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S9964.  Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DNAH6 MUTATED 3 1 14 1 1
DNAH6 WILD-TYPE 56 74 60 118 37

Figure S2750.  Get High-res Image Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DNAH6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00372 (Fisher's exact test), Q value = 0.054

Table S9965.  Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DNAH6 MUTATED 1 10 5 0 4
DNAH6 WILD-TYPE 50 66 56 71 91

Figure S2751.  Get High-res Image Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DNAH6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S9966.  Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DNAH6 MUTATED 2 8 0 5 0 0 0 2 3
DNAH6 WILD-TYPE 67 40 39 11 53 20 21 36 47

Figure S2752.  Get High-res Image Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DNAH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S9967.  Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DNAH6 MUTATED 0 1 2 0 4 0
DNAH6 WILD-TYPE 13 15 12 11 7 9

Figure S2753.  Get High-res Image Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DNAH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.58

Table S9968.  Gene #965: 'DNAH6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DNAH6 MUTATED 0 0 0 2 1 2 2 0 0
DNAH6 WILD-TYPE 11 7 7 7 7 5 9 9 5
'TRYX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S9969.  Gene #966: 'TRYX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRYX3 MUTATED 0 2 4
TRYX3 WILD-TYPE 42 171 143
'TRYX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S9970.  Gene #966: 'TRYX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRYX3 MUTATED 2 2 1
TRYX3 WILD-TYPE 60 71 74
'TRYX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S9971.  Gene #966: 'TRYX3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRYX3 MUTATED 1 1 2
TRYX3 WILD-TYPE 69 119 98
'TRYX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S9972.  Gene #966: 'TRYX3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRYX3 MUTATED 1 0 0 1 1 1 0 0 0
TRYX3 WILD-TYPE 40 26 30 28 38 68 20 14 22
'TRYX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S9973.  Gene #966: 'TRYX3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRYX3 MUTATED 1 1 3 1
TRYX3 WILD-TYPE 99 71 69 120
'TRYX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.42

Table S9974.  Gene #966: 'TRYX3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRYX3 MUTATED 1 1 3 0 1
TRYX3 WILD-TYPE 58 74 71 119 37
'TRYX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.89

Table S9975.  Gene #966: 'TRYX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRYX3 MUTATED 1 2 2 0 1
TRYX3 WILD-TYPE 50 74 59 71 94
'TRYX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S9976.  Gene #966: 'TRYX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRYX3 MUTATED 1 2 0 0 2 1 0 0 0
TRYX3 WILD-TYPE 68 46 39 16 51 19 21 38 50
'PER3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 0.3

Table S9977.  Gene #967: 'PER3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PER3 MUTATED 3 0 0 3 1
PER3 WILD-TYPE 29 18 46 24 22
'PER3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S9978.  Gene #967: 'PER3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PER3 MUTATED 3 3 1
PER3 WILD-TYPE 40 64 35
'PER3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.004 (Fisher's exact test), Q value = 0.057

Table S9979.  Gene #967: 'PER3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PER3 MUTATED 2 2 13
PER3 WILD-TYPE 40 171 134

Figure S2754.  Get High-res Image Gene #967: 'PER3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PER3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S9980.  Gene #967: 'PER3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PER3 MUTATED 3 1 6
PER3 WILD-TYPE 59 72 69
'PER3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S9981.  Gene #967: 'PER3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PER3 MUTATED 1 5 5
PER3 WILD-TYPE 69 115 95
'PER3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S9982.  Gene #967: 'PER3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PER3 MUTATED 2 2 1 2 0 3 1 0 0
PER3 WILD-TYPE 39 24 29 27 39 66 19 14 22
'PER3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0585 (Fisher's exact test), Q value = 0.26

Table S9983.  Gene #967: 'PER3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PER3 MUTATED 1 7 3 6
PER3 WILD-TYPE 99 65 69 115
'PER3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S9984.  Gene #967: 'PER3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PER3 MUTATED 1 3 5 5 3
PER3 WILD-TYPE 58 72 69 114 35
'PER3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.83

Table S9985.  Gene #967: 'PER3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PER3 MUTATED 2 6 1 2 4
PER3 WILD-TYPE 49 70 60 69 91
'PER3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.8

Table S9986.  Gene #967: 'PER3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PER3 MUTATED 3 2 0 2 3 0 2 1 2
PER3 WILD-TYPE 66 46 39 14 50 20 19 37 48
'PER3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 0.24

Table S9987.  Gene #967: 'PER3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PER3 MUTATED 0 0 0 0 2 1
PER3 WILD-TYPE 13 16 14 11 9 8
'PER3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9988.  Gene #967: 'PER3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PER3 MUTATED 1 0 0 1 0 0 1 0 0
PER3 WILD-TYPE 10 7 7 8 8 7 10 9 5
'ZNF443 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S9989.  Gene #968: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF443 MUTATED 1 0 1 3 0
ZNF443 WILD-TYPE 31 18 45 24 23
'ZNF443 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S9990.  Gene #968: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF443 MUTATED 2 3 0
ZNF443 WILD-TYPE 41 64 36
'ZNF443 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.21

Table S9991.  Gene #968: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF443 MUTATED 0 1 7
ZNF443 WILD-TYPE 42 172 140

Figure S2755.  Get High-res Image Gene #968: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF443 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S9992.  Gene #968: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF443 MUTATED 2 0 1
ZNF443 WILD-TYPE 60 73 74
'ZNF443 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S9993.  Gene #968: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF443 MUTATED 0 3 4
ZNF443 WILD-TYPE 70 117 96
'ZNF443 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S9994.  Gene #968: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF443 MUTATED 1 0 2 1 1 2 0 0 0
ZNF443 WILD-TYPE 40 26 28 28 38 67 20 14 22
'ZNF443 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S9995.  Gene #968: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF443 MUTATED 0 1 2 5
ZNF443 WILD-TYPE 100 71 70 116
'ZNF443 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.72

Table S9996.  Gene #968: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF443 MUTATED 1 0 2 3 2
ZNF443 WILD-TYPE 58 75 72 116 36
'ZNF443 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S9997.  Gene #968: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF443 MUTATED 0 2 1 0 4
ZNF443 WILD-TYPE 51 74 60 71 91
'ZNF443 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S9998.  Gene #968: 'ZNF443 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF443 MUTATED 1 2 1 0 1 1 1 0 0
ZNF443 WILD-TYPE 68 46 38 16 52 19 20 38 50
'ACAT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S9999.  Gene #969: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ACAT2 MUTATED 0 2 6
ACAT2 WILD-TYPE 42 171 141
'ACAT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10000.  Gene #969: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ACAT2 MUTATED 2 2 2
ACAT2 WILD-TYPE 60 71 73
'ACAT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S10001.  Gene #969: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ACAT2 MUTATED 0 5 2
ACAT2 WILD-TYPE 70 115 98
'ACAT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.94

Table S10002.  Gene #969: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ACAT2 MUTATED 0 2 1 0 1 3 0 0 0
ACAT2 WILD-TYPE 41 24 29 29 38 66 20 14 22
'ACAT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S10003.  Gene #969: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ACAT2 MUTATED 3 2 1 2
ACAT2 WILD-TYPE 97 70 71 119
'ACAT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.91

Table S10004.  Gene #969: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ACAT2 MUTATED 1 3 2 1 1
ACAT2 WILD-TYPE 58 72 72 118 37
'ACAT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S10005.  Gene #969: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ACAT2 MUTATED 2 4 0 0 2
ACAT2 WILD-TYPE 49 72 61 71 93
'ACAT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.92

Table S10006.  Gene #969: 'ACAT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ACAT2 MUTATED 2 1 0 1 2 1 0 1 0
ACAT2 WILD-TYPE 67 47 39 15 51 19 21 37 50
'TRIM46 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00172 (Fisher's exact test), Q value = 0.034

Table S10007.  Gene #970: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRIM46 MUTATED 2 1 12
TRIM46 WILD-TYPE 40 172 135

Figure S2756.  Get High-res Image Gene #970: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRIM46 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.099

Table S10008.  Gene #970: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRIM46 MUTATED 6 0 6
TRIM46 WILD-TYPE 56 73 69

Figure S2757.  Get High-res Image Gene #970: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TRIM46 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S10009.  Gene #970: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRIM46 MUTATED 1 7 6
TRIM46 WILD-TYPE 69 113 94
'TRIM46 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S10010.  Gene #970: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRIM46 MUTATED 0 2 1 2 3 5 1 0 0
TRIM46 WILD-TYPE 41 24 29 27 36 64 19 14 22
'TRIM46 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.11

Table S10011.  Gene #970: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRIM46 MUTATED 1 8 3 3
TRIM46 WILD-TYPE 99 64 69 118

Figure S2758.  Get High-res Image Gene #970: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TRIM46 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00562 (Fisher's exact test), Q value = 0.071

Table S10012.  Gene #970: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRIM46 MUTATED 1 2 8 1 3
TRIM46 WILD-TYPE 58 73 66 118 35

Figure S2759.  Get High-res Image Gene #970: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRIM46 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S10013.  Gene #970: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRIM46 MUTATED 1 8 1 0 5
TRIM46 WILD-TYPE 50 68 60 71 90

Figure S2760.  Get High-res Image Gene #970: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TRIM46 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S10014.  Gene #970: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRIM46 MUTATED 1 4 0 2 3 1 0 3 1
TRIM46 WILD-TYPE 68 44 39 14 50 19 21 35 49
'TRIM46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.17

Table S10015.  Gene #970: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TRIM46 MUTATED 0 0 1 0 3 0
TRIM46 WILD-TYPE 13 16 13 11 8 9

Figure S2761.  Get High-res Image Gene #970: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TRIM46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S10016.  Gene #970: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TRIM46 MUTATED 0 0 0 1 1 0 2 0 0
TRIM46 WILD-TYPE 11 7 7 8 7 7 9 9 5
'C16ORF45 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10017.  Gene #971: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C16ORF45 MUTATED 0 3 2
C16ORF45 WILD-TYPE 42 170 145
'C16ORF45 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S10018.  Gene #971: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C16ORF45 MUTATED 2 1 0
C16ORF45 WILD-TYPE 60 72 75
'C16ORF45 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S10019.  Gene #971: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C16ORF45 MUTATED 1 1 2
C16ORF45 WILD-TYPE 69 119 98
'C16ORF45 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S10020.  Gene #971: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C16ORF45 MUTATED 0 0 0 0 1 2 0 1 0
C16ORF45 WILD-TYPE 41 26 30 29 38 67 20 13 22
'C16ORF45 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10021.  Gene #971: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C16ORF45 MUTATED 1 1 1 2
C16ORF45 WILD-TYPE 99 71 71 119
'C16ORF45 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S10022.  Gene #971: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C16ORF45 MUTATED 0 1 2 2 0
C16ORF45 WILD-TYPE 59 74 72 117 38
'C16ORF45 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S10023.  Gene #971: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C16ORF45 MUTATED 0 0 2 2 1
C16ORF45 WILD-TYPE 51 76 59 69 94
'C16ORF45 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S10024.  Gene #971: 'C16ORF45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C16ORF45 MUTATED 2 1 0 0 0 0 0 0 2
C16ORF45 WILD-TYPE 67 47 39 16 53 20 21 38 48
'APBB1IP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S10025.  Gene #972: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
APBB1IP MUTATED 1 1 0 2 0
APBB1IP WILD-TYPE 31 17 46 25 23
'APBB1IP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0521 (Fisher's exact test), Q value = 0.24

Table S10026.  Gene #972: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
APBB1IP MUTATED 3 0 1
APBB1IP WILD-TYPE 40 67 35
'APBB1IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S10027.  Gene #972: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
APBB1IP MUTATED 0 7 11
APBB1IP WILD-TYPE 42 166 136
'APBB1IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S10028.  Gene #972: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
APBB1IP MUTATED 6 2 6
APBB1IP WILD-TYPE 56 71 69
'APBB1IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S10029.  Gene #972: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
APBB1IP MUTATED 1 8 4
APBB1IP WILD-TYPE 69 112 96
'APBB1IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S10030.  Gene #972: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
APBB1IP MUTATED 1 1 2 1 2 3 2 1 0
APBB1IP WILD-TYPE 40 25 28 28 37 66 18 13 22
'APBB1IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S10031.  Gene #972: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
APBB1IP MUTATED 5 2 6 5
APBB1IP WILD-TYPE 95 70 66 116
'APBB1IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S10032.  Gene #972: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
APBB1IP MUTATED 3 4 6 2 3
APBB1IP WILD-TYPE 56 71 68 117 35
'APBB1IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.65

Table S10033.  Gene #972: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
APBB1IP MUTATED 3 5 5 2 2
APBB1IP WILD-TYPE 48 71 56 69 93
'APBB1IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S10034.  Gene #972: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
APBB1IP MUTATED 4 3 0 1 4 1 3 0 1
APBB1IP WILD-TYPE 65 45 39 15 49 19 18 38 49
'APBB1IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S10035.  Gene #972: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
APBB1IP MUTATED 1 2 2 0 1 0
APBB1IP WILD-TYPE 12 14 12 11 10 9
'APBB1IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.64

Table S10036.  Gene #972: 'APBB1IP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
APBB1IP MUTATED 0 1 0 0 2 1 1 0 1
APBB1IP WILD-TYPE 11 6 7 9 6 6 10 9 4
'HSD17B11 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10037.  Gene #973: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HSD17B11 MUTATED 0 2 2
HSD17B11 WILD-TYPE 42 171 145
'HSD17B11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S10038.  Gene #973: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HSD17B11 MUTATED 1 2 1
HSD17B11 WILD-TYPE 61 71 74
'HSD17B11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.25

Table S10039.  Gene #973: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HSD17B11 MUTATED 0 0 3
HSD17B11 WILD-TYPE 70 120 97
'HSD17B11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S10040.  Gene #973: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HSD17B11 MUTATED 1 0 0 0 0 2 0 0 0
HSD17B11 WILD-TYPE 40 26 30 29 39 67 20 14 22
'HSD17B11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.76

Table S10041.  Gene #973: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HSD17B11 MUTATED 2 1 1 0
HSD17B11 WILD-TYPE 98 71 71 121
'HSD17B11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.62

Table S10042.  Gene #973: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HSD17B11 MUTATED 1 2 1 0 0
HSD17B11 WILD-TYPE 58 73 73 119 38
'HSD17B11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.61

Table S10043.  Gene #973: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HSD17B11 MUTATED 1 2 1 0 0
HSD17B11 WILD-TYPE 50 74 60 71 95
'HSD17B11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.5

Table S10044.  Gene #973: 'HSD17B11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HSD17B11 MUTATED 1 1 0 1 0 1 0 0 0
HSD17B11 WILD-TYPE 68 47 39 15 53 19 21 38 50
'DPCR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.29

Table S10045.  Gene #974: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DPCR1 MUTATED 0 3 9
DPCR1 WILD-TYPE 42 170 138
'DPCR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S10046.  Gene #974: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DPCR1 MUTATED 6 2 3
DPCR1 WILD-TYPE 56 71 72
'DPCR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S10047.  Gene #974: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DPCR1 MUTATED 2 4 5
DPCR1 WILD-TYPE 68 116 95
'DPCR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S10048.  Gene #974: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DPCR1 MUTATED 2 1 1 1 0 3 1 1 1
DPCR1 WILD-TYPE 39 25 29 28 39 66 19 13 21
'DPCR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.57

Table S10049.  Gene #974: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DPCR1 MUTATED 2 4 4 2
DPCR1 WILD-TYPE 98 68 68 119
'DPCR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.56

Table S10050.  Gene #974: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DPCR1 MUTATED 3 2 5 2 0
DPCR1 WILD-TYPE 56 73 69 117 38
'DPCR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.069 (Fisher's exact test), Q value = 0.28

Table S10051.  Gene #974: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DPCR1 MUTATED 1 6 3 0 2
DPCR1 WILD-TYPE 50 70 58 71 93
'DPCR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S10052.  Gene #974: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DPCR1 MUTATED 4 3 0 1 2 1 0 0 1
DPCR1 WILD-TYPE 65 45 39 15 51 19 21 38 49
'DPCR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S10053.  Gene #974: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DPCR1 MUTATED 0 1 2 0 2 0
DPCR1 WILD-TYPE 13 15 12 11 9 9
'DPCR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0037 (Fisher's exact test), Q value = 0.054

Table S10054.  Gene #974: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DPCR1 MUTATED 0 0 0 0 3 2 0 0 0
DPCR1 WILD-TYPE 11 7 7 9 5 5 11 9 5

Figure S2762.  Get High-res Image Gene #974: 'DPCR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DCLRE1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S10055.  Gene #975: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DCLRE1A MUTATED 2 0 0 1 0
DCLRE1A WILD-TYPE 30 18 46 26 23
'DCLRE1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S10056.  Gene #975: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DCLRE1A MUTATED 3 0 0
DCLRE1A WILD-TYPE 40 67 36

Figure S2763.  Get High-res Image Gene #975: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DCLRE1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0533 (Fisher's exact test), Q value = 0.25

Table S10057.  Gene #975: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DCLRE1A MUTATED 0 2 8
DCLRE1A WILD-TYPE 42 171 139
'DCLRE1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10058.  Gene #975: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DCLRE1A MUTATED 1 2 2
DCLRE1A WILD-TYPE 61 71 73
'DCLRE1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10059.  Gene #975: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DCLRE1A MUTATED 2 4 3
DCLRE1A WILD-TYPE 68 116 97
'DCLRE1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S10060.  Gene #975: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DCLRE1A MUTATED 0 3 2 0 1 2 0 1 0
DCLRE1A WILD-TYPE 41 23 28 29 38 67 20 13 22
'DCLRE1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S10061.  Gene #975: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DCLRE1A MUTATED 2 2 2 4
DCLRE1A WILD-TYPE 98 70 70 117
'DCLRE1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00284 (Fisher's exact test), Q value = 0.046

Table S10062.  Gene #975: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DCLRE1A MUTATED 1 1 4 0 4
DCLRE1A WILD-TYPE 58 74 70 119 34

Figure S2764.  Get High-res Image Gene #975: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DCLRE1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S10063.  Gene #975: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DCLRE1A MUTATED 0 3 0 2 4
DCLRE1A WILD-TYPE 51 73 61 69 91
'DCLRE1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S10064.  Gene #975: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DCLRE1A MUTATED 3 1 0 1 0 0 1 3 0
DCLRE1A WILD-TYPE 66 47 39 15 53 20 20 35 50
'DCLRE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.96

Table S10065.  Gene #975: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DCLRE1A MUTATED 0 0 1 1 1 0
DCLRE1A WILD-TYPE 13 16 13 10 10 9
'DCLRE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S10066.  Gene #975: 'DCLRE1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DCLRE1A MUTATED 0 0 0 1 0 0 1 1 0
DCLRE1A WILD-TYPE 11 7 7 8 8 7 10 8 5
'C7ORF50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S10067.  Gene #976: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C7ORF50 MUTATED 1 1 3
C7ORF50 WILD-TYPE 41 172 144
'C7ORF50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.2

Table S10068.  Gene #976: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C7ORF50 MUTATED 0 0 4
C7ORF50 WILD-TYPE 62 73 71

Figure S2765.  Get High-res Image Gene #976: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C7ORF50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.98

Table S10069.  Gene #976: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C7ORF50 MUTATED 0 2 2
C7ORF50 WILD-TYPE 70 118 98
'C7ORF50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S10070.  Gene #976: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C7ORF50 MUTATED 0 0 0 2 0 2 0 0 0
C7ORF50 WILD-TYPE 41 26 30 27 39 67 20 14 22
'C7ORF50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S10071.  Gene #976: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C7ORF50 MUTATED 0 4 0 1
C7ORF50 WILD-TYPE 100 68 72 120

Figure S2766.  Get High-res Image Gene #976: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C7ORF50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0438 (Fisher's exact test), Q value = 0.22

Table S10072.  Gene #976: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C7ORF50 MUTATED 0 0 4 1 0
C7ORF50 WILD-TYPE 59 75 70 118 38

Figure S2767.  Get High-res Image Gene #976: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S10073.  Gene #976: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C7ORF50 MUTATED 0 4 0 0 1
C7ORF50 WILD-TYPE 51 72 61 71 94

Figure S2768.  Get High-res Image Gene #976: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00271 (Fisher's exact test), Q value = 0.044

Table S10074.  Gene #976: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C7ORF50 MUTATED 1 0 0 3 0 0 0 0 1
C7ORF50 WILD-TYPE 68 48 39 13 53 20 21 38 49

Figure S2769.  Get High-res Image Gene #976: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'WDR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S10075.  Gene #977: 'WDR5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WDR5 MUTATED 0 2 4
WDR5 WILD-TYPE 42 171 143
'WDR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S10076.  Gene #977: 'WDR5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WDR5 MUTATED 3 0 2
WDR5 WILD-TYPE 59 73 73
'WDR5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10077.  Gene #977: 'WDR5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WDR5 MUTATED 1 3 2
WDR5 WILD-TYPE 69 117 98
'WDR5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.9

Table S10078.  Gene #977: 'WDR5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WDR5 MUTATED 0 0 0 1 1 2 0 1 1
WDR5 WILD-TYPE 41 26 30 28 38 67 20 13 21
'WDR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S10079.  Gene #977: 'WDR5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WDR5 MUTATED 1 2 2 1
WDR5 WILD-TYPE 99 70 70 120
'WDR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S10080.  Gene #977: 'WDR5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WDR5 MUTATED 1 1 3 0 1
WDR5 WILD-TYPE 58 74 71 119 37
'WDR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S10081.  Gene #977: 'WDR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WDR5 MUTATED 1 3 1 0 1
WDR5 WILD-TYPE 50 73 60 71 94
'WDR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S10082.  Gene #977: 'WDR5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WDR5 MUTATED 1 2 1 1 0 0 0 1 0
WDR5 WILD-TYPE 68 46 38 15 53 20 21 37 50
'MAGI1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S10083.  Gene #978: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MAGI1 MUTATED 4 0 1 2 1
MAGI1 WILD-TYPE 28 18 45 25 22
'MAGI1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S10084.  Gene #978: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MAGI1 MUTATED 4 2 2
MAGI1 WILD-TYPE 39 65 34
'MAGI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-04 (Fisher's exact test), Q value = 0.022

Table S10085.  Gene #978: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAGI1 MUTATED 1 4 18
MAGI1 WILD-TYPE 41 169 129

Figure S2770.  Get High-res Image Gene #978: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAGI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S10086.  Gene #978: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAGI1 MUTATED 4 3 7
MAGI1 WILD-TYPE 58 70 68
'MAGI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S10087.  Gene #978: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAGI1 MUTATED 4 11 5
MAGI1 WILD-TYPE 66 109 95
'MAGI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S10088.  Gene #978: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAGI1 MUTATED 2 1 2 2 4 4 2 2 1
MAGI1 WILD-TYPE 39 25 28 27 35 65 18 12 21
'MAGI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S10089.  Gene #978: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAGI1 MUTATED 3 8 3 9
MAGI1 WILD-TYPE 97 64 69 112
'MAGI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.57

Table S10090.  Gene #978: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAGI1 MUTATED 2 3 8 6 4
MAGI1 WILD-TYPE 57 72 66 113 34
'MAGI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S10091.  Gene #978: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAGI1 MUTATED 1 7 3 2 9
MAGI1 WILD-TYPE 50 69 58 69 86
'MAGI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.096

Table S10092.  Gene #978: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAGI1 MUTATED 1 2 2 4 3 3 1 5 1
MAGI1 WILD-TYPE 68 46 37 12 50 17 20 33 49

Figure S2771.  Get High-res Image Gene #978: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAGI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.16

Table S10093.  Gene #978: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAGI1 MUTATED 0 0 1 0 3 0
MAGI1 WILD-TYPE 13 16 13 11 8 9

Figure S2772.  Get High-res Image Gene #978: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MAGI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S10094.  Gene #978: 'MAGI1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAGI1 MUTATED 0 0 0 2 1 0 1 0 0
MAGI1 WILD-TYPE 11 7 7 7 7 7 10 9 5
'PARG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.17

Table S10095.  Gene #979: 'PARG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PARG MUTATED 0 2 9
PARG WILD-TYPE 42 171 138

Figure S2773.  Get High-res Image Gene #979: 'PARG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PARG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S10096.  Gene #979: 'PARG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PARG MUTATED 5 1 5
PARG WILD-TYPE 57 72 70
'PARG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S10097.  Gene #979: 'PARG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PARG MUTATED 2 2 6
PARG WILD-TYPE 68 118 94
'PARG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S10098.  Gene #979: 'PARG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PARG MUTATED 2 1 0 1 1 5 0 0 0
PARG WILD-TYPE 39 25 30 28 38 64 20 14 22
'PARG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S10099.  Gene #979: 'PARG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PARG MUTATED 2 4 4 1
PARG WILD-TYPE 98 68 68 120
'PARG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0554 (Fisher's exact test), Q value = 0.25

Table S10100.  Gene #979: 'PARG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PARG MUTATED 2 2 6 1 0
PARG WILD-TYPE 57 73 68 118 38
'PARG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S10101.  Gene #979: 'PARG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PARG MUTATED 1 5 3 0 2
PARG WILD-TYPE 50 71 58 71 93
'PARG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.54

Table S10102.  Gene #979: 'PARG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PARG MUTATED 2 4 0 2 1 0 0 1 1
PARG WILD-TYPE 67 44 39 14 52 20 21 37 49
'VPS52 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.37

Table S10103.  Gene #980: 'VPS52 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
VPS52 MUTATED 3 1 0 1 0
VPS52 WILD-TYPE 29 17 46 26 23
'VPS52 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.16

Table S10104.  Gene #980: 'VPS52 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
VPS52 MUTATED 4 0 1
VPS52 WILD-TYPE 39 67 35

Figure S2774.  Get High-res Image Gene #980: 'VPS52 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'VPS52 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S10105.  Gene #980: 'VPS52 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
VPS52 MUTATED 1 1 8
VPS52 WILD-TYPE 41 172 139

Figure S2775.  Get High-res Image Gene #980: 'VPS52 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VPS52 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S10106.  Gene #980: 'VPS52 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
VPS52 MUTATED 3 1 2
VPS52 WILD-TYPE 59 72 73
'VPS52 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0876 (Fisher's exact test), Q value = 0.32

Table S10107.  Gene #980: 'VPS52 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
VPS52 MUTATED 2 1 6
VPS52 WILD-TYPE 68 119 94
'VPS52 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S10108.  Gene #980: 'VPS52 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
VPS52 MUTATED 1 1 0 1 1 4 1 0 0
VPS52 WILD-TYPE 40 25 30 28 38 65 19 14 22
'VPS52 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S10109.  Gene #980: 'VPS52 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
VPS52 MUTATED 1 3 2 5
VPS52 WILD-TYPE 99 69 70 116
'VPS52 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S10110.  Gene #980: 'VPS52 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
VPS52 MUTATED 2 1 3 2 3
VPS52 WILD-TYPE 57 74 71 117 35
'VPS52 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S10111.  Gene #980: 'VPS52 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
VPS52 MUTATED 0 2 2 2 4
VPS52 WILD-TYPE 51 74 59 69 91
'VPS52 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S10112.  Gene #980: 'VPS52 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
VPS52 MUTATED 2 2 0 1 1 0 1 3 0
VPS52 WILD-TYPE 67 46 39 15 52 20 20 35 50
'RRM2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.56

Table S10113.  Gene #981: 'RRM2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RRM2B MUTATED 0 1 4
RRM2B WILD-TYPE 42 172 143
'RRM2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S10114.  Gene #981: 'RRM2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RRM2B MUTATED 2 2 1
RRM2B WILD-TYPE 60 71 74
'RRM2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S10115.  Gene #981: 'RRM2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RRM2B MUTATED 0 4 1
RRM2B WILD-TYPE 70 116 99
'RRM2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S10116.  Gene #981: 'RRM2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RRM2B MUTATED 0 1 0 0 0 2 1 0 1
RRM2B WILD-TYPE 41 25 30 29 39 67 19 14 21
'RRM2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S10117.  Gene #981: 'RRM2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RRM2B MUTATED 2 1 1 1
RRM2B WILD-TYPE 98 71 71 120
'RRM2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S10118.  Gene #981: 'RRM2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RRM2B MUTATED 0 2 2 1 0
RRM2B WILD-TYPE 59 73 72 118 38
'RRM2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S10119.  Gene #981: 'RRM2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RRM2B MUTATED 1 3 0 0 1
RRM2B WILD-TYPE 50 73 61 71 94
'RRM2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S10120.  Gene #981: 'RRM2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RRM2B MUTATED 1 1 0 0 1 1 0 0 1
RRM2B WILD-TYPE 68 47 39 16 52 19 21 38 49
'OR4C15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 0.2

Table S10121.  Gene #982: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR4C15 MUTATED 0 3 10
OR4C15 WILD-TYPE 42 170 137

Figure S2776.  Get High-res Image Gene #982: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OR4C15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0859 (Fisher's exact test), Q value = 0.32

Table S10122.  Gene #982: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR4C15 MUTATED 6 1 4
OR4C15 WILD-TYPE 56 72 71
'OR4C15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S10123.  Gene #982: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR4C15 MUTATED 2 6 5
OR4C15 WILD-TYPE 68 114 95
'OR4C15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.63

Table S10124.  Gene #982: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR4C15 MUTATED 0 3 3 1 1 4 1 0 0
OR4C15 WILD-TYPE 41 23 27 28 38 65 19 14 22
'OR4C15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 0.99

Table S10125.  Gene #982: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR4C15 MUTATED 3 4 3 3
OR4C15 WILD-TYPE 97 68 69 118
'OR4C15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S10126.  Gene #982: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR4C15 MUTATED 1 4 5 1 2
OR4C15 WILD-TYPE 58 71 69 118 36
'OR4C15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.94

Table S10127.  Gene #982: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR4C15 MUTATED 1 5 1 2 3
OR4C15 WILD-TYPE 50 71 60 69 92
'OR4C15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.77

Table S10128.  Gene #982: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR4C15 MUTATED 6 2 1 0 0 0 0 1 2
OR4C15 WILD-TYPE 63 46 38 16 53 20 21 37 48
'OR4C15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S10129.  Gene #982: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR4C15 MUTATED 1 0 1 0 1 0
OR4C15 WILD-TYPE 12 16 13 11 10 9
'OR4C15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10130.  Gene #982: 'OR4C15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR4C15 MUTATED 1 0 0 0 0 0 1 1 0
OR4C15 WILD-TYPE 10 7 7 9 8 7 10 8 5
'MANBA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00754 (Fisher's exact test), Q value = 0.081

Table S10131.  Gene #983: 'MANBA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MANBA MUTATED 5 0 0 1 0
MANBA WILD-TYPE 27 18 46 26 23

Figure S2777.  Get High-res Image Gene #983: 'MANBA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MANBA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00058 (Fisher's exact test), Q value = 0.018

Table S10132.  Gene #983: 'MANBA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MANBA MUTATED 6 0 0
MANBA WILD-TYPE 37 67 36

Figure S2778.  Get High-res Image Gene #983: 'MANBA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MANBA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S10133.  Gene #983: 'MANBA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MANBA MUTATED 0 2 10
MANBA WILD-TYPE 42 171 137

Figure S2779.  Get High-res Image Gene #983: 'MANBA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MANBA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.78

Table S10134.  Gene #983: 'MANBA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MANBA MUTATED 3 2 1
MANBA WILD-TYPE 59 71 74
'MANBA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 0.21

Table S10135.  Gene #983: 'MANBA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MANBA MUTATED 0 3 7
MANBA WILD-TYPE 70 117 93

Figure S2780.  Get High-res Image Gene #983: 'MANBA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MANBA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0878 (Fisher's exact test), Q value = 0.32

Table S10136.  Gene #983: 'MANBA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MANBA MUTATED 0 0 0 1 0 7 1 0 1
MANBA WILD-TYPE 41 26 30 28 39 62 19 14 21
'MANBA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S10137.  Gene #983: 'MANBA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MANBA MUTATED 2 3 2 5
MANBA WILD-TYPE 98 69 70 116
'MANBA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00528 (Fisher's exact test), Q value = 0.068

Table S10138.  Gene #983: 'MANBA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MANBA MUTATED 1 4 1 1 5
MANBA WILD-TYPE 58 71 73 118 33

Figure S2781.  Get High-res Image Gene #983: 'MANBA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MANBA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.46

Table S10139.  Gene #983: 'MANBA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MANBA MUTATED 0 3 2 0 5
MANBA WILD-TYPE 51 73 59 71 90
'MANBA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.95

Table S10140.  Gene #983: 'MANBA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MANBA MUTATED 1 1 2 0 1 0 1 3 1
MANBA WILD-TYPE 68 47 37 16 52 20 20 35 49
'IKBKB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S10141.  Gene #984: 'IKBKB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IKBKB MUTATED 1 3 3
IKBKB WILD-TYPE 41 170 144
'IKBKB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10142.  Gene #984: 'IKBKB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IKBKB MUTATED 1 2 2
IKBKB WILD-TYPE 61 71 73
'IKBKB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.72

Table S10143.  Gene #984: 'IKBKB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IKBKB MUTATED 1 5 1
IKBKB WILD-TYPE 69 115 99
'IKBKB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S10144.  Gene #984: 'IKBKB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IKBKB MUTATED 1 1 1 2 0 0 1 1 0
IKBKB WILD-TYPE 40 25 29 27 39 69 19 13 22
'IKBKB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S10145.  Gene #984: 'IKBKB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IKBKB MUTATED 3 1 1 2
IKBKB WILD-TYPE 97 71 71 119
'IKBKB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S10146.  Gene #984: 'IKBKB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IKBKB MUTATED 1 3 1 2 0
IKBKB WILD-TYPE 58 72 73 117 38
'IKBKB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S10147.  Gene #984: 'IKBKB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IKBKB MUTATED 3 0 2 1 1
IKBKB WILD-TYPE 48 76 59 70 94
'IKBKB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S10148.  Gene #984: 'IKBKB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IKBKB MUTATED 1 1 1 0 2 1 0 0 1
IKBKB WILD-TYPE 68 47 38 16 51 19 21 38 49
'PIK3C2G MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S10149.  Gene #985: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PIK3C2G MUTATED 3 0 0 1 1
PIK3C2G WILD-TYPE 29 18 46 26 22
'PIK3C2G MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S10150.  Gene #985: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PIK3C2G MUTATED 2 1 2
PIK3C2G WILD-TYPE 41 66 34
'PIK3C2G MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00637 (Fisher's exact test), Q value = 0.075

Table S10151.  Gene #985: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PIK3C2G MUTATED 1 4 15
PIK3C2G WILD-TYPE 41 169 132

Figure S2782.  Get High-res Image Gene #985: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIK3C2G MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S10152.  Gene #985: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PIK3C2G MUTATED 7 4 4
PIK3C2G WILD-TYPE 55 69 71
'PIK3C2G MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 0.24

Table S10153.  Gene #985: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PIK3C2G MUTATED 1 5 10
PIK3C2G WILD-TYPE 69 115 90

Figure S2783.  Get High-res Image Gene #985: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PIK3C2G MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0319 (Fisher's exact test), Q value = 0.19

Table S10154.  Gene #985: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PIK3C2G MUTATED 2 0 1 1 0 6 3 3 0
PIK3C2G WILD-TYPE 39 26 29 28 39 63 17 11 22

Figure S2784.  Get High-res Image Gene #985: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PIK3C2G MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.82

Table S10155.  Gene #985: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PIK3C2G MUTATED 4 6 5 5
PIK3C2G WILD-TYPE 96 66 67 116
'PIK3C2G MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S10156.  Gene #985: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PIK3C2G MUTATED 3 4 8 3 2
PIK3C2G WILD-TYPE 56 71 66 116 36
'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S10157.  Gene #985: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PIK3C2G MUTATED 3 7 3 5 2
PIK3C2G WILD-TYPE 48 69 58 66 93
'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S10158.  Gene #985: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PIK3C2G MUTATED 5 5 2 2 2 2 0 2 0
PIK3C2G WILD-TYPE 64 43 37 14 51 18 21 36 50
'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10159.  Gene #985: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PIK3C2G MUTATED 1 1 1 0 1 0
PIK3C2G WILD-TYPE 12 15 13 11 10 9
'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0379 (Fisher's exact test), Q value = 0.21

Table S10160.  Gene #985: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PIK3C2G MUTATED 0 0 0 2 0 2 0 0 0
PIK3C2G WILD-TYPE 11 7 7 7 8 5 11 9 5

Figure S2785.  Get High-res Image Gene #985: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RTN4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S10161.  Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RTN4 MUTATED 5 1 0 1 0
RTN4 WILD-TYPE 27 17 46 26 23

Figure S2786.  Get High-res Image Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RTN4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00539 (Fisher's exact test), Q value = 0.069

Table S10162.  Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RTN4 MUTATED 6 1 0
RTN4 WILD-TYPE 37 66 36

Figure S2787.  Get High-res Image Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RTN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S10163.  Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RTN4 MUTATED 1 0 18
RTN4 WILD-TYPE 41 173 129

Figure S2788.  Get High-res Image Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RTN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00906 (Fisher's exact test), Q value = 0.089

Table S10164.  Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RTN4 MUTATED 5 0 8
RTN4 WILD-TYPE 57 73 67

Figure S2789.  Get High-res Image Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RTN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S10165.  Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RTN4 MUTATED 4 6 7
RTN4 WILD-TYPE 66 114 93
'RTN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S10166.  Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RTN4 MUTATED 3 1 1 0 4 6 0 1 1
RTN4 WILD-TYPE 38 25 29 29 35 63 20 13 21
'RTN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.09 (Fisher's exact test), Q value = 0.33

Table S10167.  Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RTN4 MUTATED 1 6 4 8
RTN4 WILD-TYPE 99 66 68 113
'RTN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00985 (Fisher's exact test), Q value = 0.093

Table S10168.  Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RTN4 MUTATED 1 2 8 3 5
RTN4 WILD-TYPE 58 73 66 116 33

Figure S2790.  Get High-res Image Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RTN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00868 (Fisher's exact test), Q value = 0.088

Table S10169.  Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RTN4 MUTATED 0 7 3 0 8
RTN4 WILD-TYPE 51 69 58 71 87

Figure S2791.  Get High-res Image Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RTN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S10170.  Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RTN4 MUTATED 3 3 1 2 0 2 1 4 2
RTN4 WILD-TYPE 66 45 38 14 53 18 20 34 48
'RTN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S10171.  Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RTN4 MUTATED 0 1 1 0 1 0
RTN4 WILD-TYPE 13 15 13 11 10 9
'RTN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.21

Table S10172.  Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RTN4 MUTATED 0 0 0 0 0 0 3 0 0
RTN4 WILD-TYPE 11 7 7 9 8 7 8 9 5

Figure S2792.  Get High-res Image Gene #986: 'RTN4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C7ORF58 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 0.3

Table S10173.  Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C7ORF58 MUTATED 3 0 0 2 0
C7ORF58 WILD-TYPE 29 18 46 25 23
'C7ORF58 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0668 (Fisher's exact test), Q value = 0.28

Table S10174.  Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C7ORF58 MUTATED 4 1 0
C7ORF58 WILD-TYPE 39 66 36
'C7ORF58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00415 (Fisher's exact test), Q value = 0.058

Table S10175.  Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C7ORF58 MUTATED 1 4 16
C7ORF58 WILD-TYPE 41 169 131

Figure S2793.  Get High-res Image Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C7ORF58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.26

Table S10176.  Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C7ORF58 MUTATED 9 4 3
C7ORF58 WILD-TYPE 53 69 72
'C7ORF58 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.2

Table S10177.  Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C7ORF58 MUTATED 1 7 11
C7ORF58 WILD-TYPE 69 113 89

Figure S2794.  Get High-res Image Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C7ORF58 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S10178.  Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C7ORF58 MUTATED 3 1 1 2 1 9 0 2 0
C7ORF58 WILD-TYPE 38 25 29 27 38 60 20 12 22
'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S10179.  Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C7ORF58 MUTATED 4 6 6 5
C7ORF58 WILD-TYPE 96 66 66 116
'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0681 (Fisher's exact test), Q value = 0.28

Table S10180.  Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C7ORF58 MUTATED 3 5 8 2 3
C7ORF58 WILD-TYPE 56 70 66 117 35
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00134 (Fisher's exact test), Q value = 0.03

Table S10181.  Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C7ORF58 MUTATED 0 10 5 0 5
C7ORF58 WILD-TYPE 51 66 56 71 90

Figure S2795.  Get High-res Image Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0344 (Fisher's exact test), Q value = 0.2

Table S10182.  Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C7ORF58 MUTATED 3 8 0 1 2 2 2 1 1
C7ORF58 WILD-TYPE 66 40 39 15 51 18 19 37 49

Figure S2796.  Get High-res Image Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00907 (Fisher's exact test), Q value = 0.089

Table S10183.  Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C7ORF58 MUTATED 0 0 0 2 3 0
C7ORF58 WILD-TYPE 13 16 14 9 8 9

Figure S2797.  Get High-res Image Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S10184.  Gene #987: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C7ORF58 MUTATED 0 0 1 1 0 0 3 0 0
C7ORF58 WILD-TYPE 11 7 6 8 8 7 8 9 5
'WDR75 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S10185.  Gene #988: 'WDR75 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
WDR75 MUTATED 3 0 0 1 1
WDR75 WILD-TYPE 29 18 46 26 22
'WDR75 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 0.24

Table S10186.  Gene #988: 'WDR75 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
WDR75 MUTATED 3 0 2
WDR75 WILD-TYPE 40 67 34
'WDR75 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 0.26

Table S10187.  Gene #988: 'WDR75 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WDR75 MUTATED 2 1 5
WDR75 WILD-TYPE 40 172 142
'WDR75 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S10188.  Gene #988: 'WDR75 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WDR75 MUTATED 0 0 3
WDR75 WILD-TYPE 62 73 72
'WDR75 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S10189.  Gene #988: 'WDR75 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WDR75 MUTATED 3 2 1
WDR75 WILD-TYPE 67 118 99
'WDR75 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.95

Table S10190.  Gene #988: 'WDR75 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WDR75 MUTATED 0 1 1 0 1 1 1 0 1
WDR75 WILD-TYPE 41 25 29 29 38 68 19 14 21
'WDR75 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S10191.  Gene #988: 'WDR75 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WDR75 MUTATED 1 0 2 5
WDR75 WILD-TYPE 99 72 70 116
'WDR75 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 0.3

Table S10192.  Gene #988: 'WDR75 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WDR75 MUTATED 2 0 1 2 3
WDR75 WILD-TYPE 57 75 73 117 35
'WDR75 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S10193.  Gene #988: 'WDR75 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WDR75 MUTATED 1 1 1 2 1
WDR75 WILD-TYPE 50 75 60 69 94
'WDR75 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S10194.  Gene #988: 'WDR75 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WDR75 MUTATED 0 1 0 1 1 0 0 1 2
WDR75 WILD-TYPE 69 47 39 15 52 20 21 37 48
'FAM20B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S10195.  Gene #989: 'FAM20B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM20B MUTATED 0 3 7
FAM20B WILD-TYPE 42 170 140
'FAM20B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.1

Table S10196.  Gene #989: 'FAM20B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM20B MUTATED 6 0 2
FAM20B WILD-TYPE 56 73 73

Figure S2798.  Get High-res Image Gene #989: 'FAM20B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FAM20B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S10197.  Gene #989: 'FAM20B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM20B MUTATED 0 5 3
FAM20B WILD-TYPE 70 115 97
'FAM20B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.77

Table S10198.  Gene #989: 'FAM20B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM20B MUTATED 0 2 0 1 1 2 1 1 0
FAM20B WILD-TYPE 41 24 30 28 38 67 19 13 22
'FAM20B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S10199.  Gene #989: 'FAM20B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM20B MUTATED 2 3 2 3
FAM20B WILD-TYPE 98 69 70 118
'FAM20B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S10200.  Gene #989: 'FAM20B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM20B MUTATED 2 1 4 1 2
FAM20B WILD-TYPE 57 74 70 118 36
'FAM20B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.15

Table S10201.  Gene #989: 'FAM20B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM20B MUTATED 1 6 0 0 2
FAM20B WILD-TYPE 50 70 61 71 93

Figure S2799.  Get High-res Image Gene #989: 'FAM20B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FAM20B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.72

Table S10202.  Gene #989: 'FAM20B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM20B MUTATED 2 2 1 2 0 0 0 1 1
FAM20B WILD-TYPE 67 46 38 14 53 20 21 37 49
'FAM20B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S10203.  Gene #989: 'FAM20B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FAM20B MUTATED 0 0 0 1 3 0
FAM20B WILD-TYPE 13 16 14 10 8 9

Figure S2800.  Get High-res Image Gene #989: 'FAM20B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FAM20B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.74

Table S10204.  Gene #989: 'FAM20B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FAM20B MUTATED 0 0 0 2 0 1 1 0 0
FAM20B WILD-TYPE 11 7 7 7 8 6 10 9 5
'CEP164 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00845 (Fisher's exact test), Q value = 0.086

Table S10205.  Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CEP164 MUTATED 5 0 0 2 0
CEP164 WILD-TYPE 27 18 46 25 23

Figure S2801.  Get High-res Image Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CEP164 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00506 (Fisher's exact test), Q value = 0.067

Table S10206.  Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CEP164 MUTATED 6 1 0
CEP164 WILD-TYPE 37 66 36

Figure S2802.  Get High-res Image Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CEP164 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00075 (Fisher's exact test), Q value = 0.021

Table S10207.  Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CEP164 MUTATED 1 4 18
CEP164 WILD-TYPE 41 169 129

Figure S2803.  Get High-res Image Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CEP164 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.12

Table S10208.  Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CEP164 MUTATED 4 1 10
CEP164 WILD-TYPE 58 72 65

Figure S2804.  Get High-res Image Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CEP164 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S10209.  Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CEP164 MUTATED 1 9 7
CEP164 WILD-TYPE 69 111 93
'CEP164 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S10210.  Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CEP164 MUTATED 1 2 3 3 2 5 0 0 1
CEP164 WILD-TYPE 40 24 27 26 37 64 20 14 21
'CEP164 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 0.32

Table S10211.  Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CEP164 MUTATED 2 8 5 8
CEP164 WILD-TYPE 98 64 67 113
'CEP164 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0084

Table S10212.  Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CEP164 MUTATED 2 4 9 1 7
CEP164 WILD-TYPE 57 71 65 118 31

Figure S2805.  Get High-res Image Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CEP164 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00261 (Fisher's exact test), Q value = 0.044

Table S10213.  Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CEP164 MUTATED 1 11 5 0 6
CEP164 WILD-TYPE 50 65 56 71 89

Figure S2806.  Get High-res Image Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CEP164 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00484 (Fisher's exact test), Q value = 0.065

Table S10214.  Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CEP164 MUTATED 6 4 0 4 1 2 2 4 0
CEP164 WILD-TYPE 63 44 39 12 52 18 19 34 50

Figure S2807.  Get High-res Image Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CEP164 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.19

Table S10215.  Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CEP164 MUTATED 0 1 0 0 3 0
CEP164 WILD-TYPE 13 15 14 11 8 9

Figure S2808.  Get High-res Image Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CEP164 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S10216.  Gene #990: 'CEP164 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CEP164 MUTATED 0 1 0 2 0 1 0 0 0
CEP164 WILD-TYPE 11 6 7 7 8 6 11 9 5
'SF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0555 (Fisher's exact test), Q value = 0.25

Table S10217.  Gene #991: 'SF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SF1 MUTATED 3 0 0 0 0
SF1 WILD-TYPE 29 18 46 27 23
'SF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.21

Table S10218.  Gene #991: 'SF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SF1 MUTATED 3 0 0
SF1 WILD-TYPE 40 67 36

Figure S2809.  Get High-res Image Gene #991: 'SF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.25

Table S10219.  Gene #991: 'SF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SF1 MUTATED 0 4 10
SF1 WILD-TYPE 42 169 137
'SF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S10220.  Gene #991: 'SF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SF1 MUTATED 4 3 2
SF1 WILD-TYPE 58 70 73
'SF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.19

Table S10221.  Gene #991: 'SF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SF1 MUTATED 1 2 8
SF1 WILD-TYPE 69 118 92

Figure S2810.  Get High-res Image Gene #991: 'SF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S10222.  Gene #991: 'SF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SF1 MUTATED 1 0 3 0 1 6 0 0 0
SF1 WILD-TYPE 40 26 27 29 38 63 20 14 22
'SF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S10223.  Gene #991: 'SF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SF1 MUTATED 3 3 4 4
SF1 WILD-TYPE 97 69 68 117
'SF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00414 (Fisher's exact test), Q value = 0.058

Table S10224.  Gene #991: 'SF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SF1 MUTATED 4 2 4 0 4
SF1 WILD-TYPE 55 73 70 119 34

Figure S2811.  Get High-res Image Gene #991: 'SF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.72

Table S10225.  Gene #991: 'SF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SF1 MUTATED 1 3 5 1 4
SF1 WILD-TYPE 50 73 56 70 91
'SF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S10226.  Gene #991: 'SF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SF1 MUTATED 0 5 1 2 1 0 0 4 1
SF1 WILD-TYPE 69 43 38 14 52 20 21 34 49

Figure S2812.  Get High-res Image Gene #991: 'SF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S10227.  Gene #991: 'SF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SF1 MUTATED 1 1 0 1 1 0
SF1 WILD-TYPE 12 15 14 10 10 9
'SF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S10228.  Gene #991: 'SF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SF1 MUTATED 0 1 1 0 0 1 1 0 0
SF1 WILD-TYPE 11 6 6 9 8 6 10 9 5
'KIF16B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00243 (Fisher's exact test), Q value = 0.042

Table S10229.  Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIF16B MUTATED 6 0 0 2 0
KIF16B WILD-TYPE 26 18 46 25 23

Figure S2813.  Get High-res Image Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIF16B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0048

Table S10230.  Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIF16B MUTATED 8 0 0
KIF16B WILD-TYPE 35 67 36

Figure S2814.  Get High-res Image Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KIF16B MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S10231.  Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIF16B MUTATED 3 2 20
KIF16B WILD-TYPE 39 171 127

Figure S2815.  Get High-res Image Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIF16B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S10232.  Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIF16B MUTATED 5 5 7
KIF16B WILD-TYPE 57 68 68
'KIF16B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.94

Table S10233.  Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIF16B MUTATED 4 7 9
KIF16B WILD-TYPE 66 113 91
'KIF16B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S10234.  Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIF16B MUTATED 2 0 2 3 1 8 2 1 1
KIF16B WILD-TYPE 39 26 28 26 38 61 18 13 21
'KIF16B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S10235.  Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIF16B MUTATED 5 6 6 9
KIF16B WILD-TYPE 95 66 66 112
'KIF16B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S10236.  Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIF16B MUTATED 3 7 7 0 9
KIF16B WILD-TYPE 56 68 67 119 29

Figure S2816.  Get High-res Image Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIF16B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00757 (Fisher's exact test), Q value = 0.081

Table S10237.  Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIF16B MUTATED 4 10 2 0 8
KIF16B WILD-TYPE 47 66 59 71 87

Figure S2817.  Get High-res Image Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIF16B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0638 (Fisher's exact test), Q value = 0.27

Table S10238.  Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIF16B MUTATED 4 3 2 4 3 0 1 6 1
KIF16B WILD-TYPE 65 45 37 12 50 20 20 32 49
'KIF16B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.19

Table S10239.  Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIF16B MUTATED 0 1 0 0 3 0
KIF16B WILD-TYPE 13 15 14 11 8 9

Figure S2818.  Get High-res Image Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KIF16B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S10240.  Gene #992: 'KIF16B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIF16B MUTATED 1 0 1 1 1 0 0 0 0
KIF16B WILD-TYPE 10 7 6 8 7 7 11 9 5
'COL6A5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.74

Table S10241.  Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
COL6A5 MUTATED 3 0 1 1 0
COL6A5 WILD-TYPE 29 18 45 26 23
'COL6A5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0513 (Fisher's exact test), Q value = 0.24

Table S10242.  Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
COL6A5 MUTATED 3 0 2
COL6A5 WILD-TYPE 40 67 34
'COL6A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 0.19

Table S10243.  Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
COL6A5 MUTATED 2 10 20
COL6A5 WILD-TYPE 40 163 127

Figure S2819.  Get High-res Image Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'COL6A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.52

Table S10244.  Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
COL6A5 MUTATED 12 7 8
COL6A5 WILD-TYPE 50 66 67
'COL6A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00984 (Fisher's exact test), Q value = 0.093

Table S10245.  Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
COL6A5 MUTATED 2 11 17
COL6A5 WILD-TYPE 68 109 83

Figure S2820.  Get High-res Image Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'COL6A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.24

Table S10246.  Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
COL6A5 MUTATED 1 1 2 5 1 11 2 3 4
COL6A5 WILD-TYPE 40 25 28 24 38 58 18 11 18

Figure S2821.  Get High-res Image Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'COL6A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S10247.  Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
COL6A5 MUTATED 9 10 8 6
COL6A5 WILD-TYPE 91 62 64 115
'COL6A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00656 (Fisher's exact test), Q value = 0.076

Table S10248.  Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
COL6A5 MUTATED 8 6 12 3 4
COL6A5 WILD-TYPE 51 69 62 116 34

Figure S2822.  Get High-res Image Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'COL6A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S10249.  Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
COL6A5 MUTATED 5 11 6 5 5
COL6A5 WILD-TYPE 46 65 55 66 90
'COL6A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00571 (Fisher's exact test), Q value = 0.071

Table S10250.  Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
COL6A5 MUTATED 8 5 2 7 4 0 0 3 3
COL6A5 WILD-TYPE 61 43 37 9 49 20 21 35 47

Figure S2823.  Get High-res Image Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COL6A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S10251.  Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
COL6A5 MUTATED 1 1 2 3 3 0
COL6A5 WILD-TYPE 12 15 12 8 8 9
'COL6A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S10252.  Gene #993: 'COL6A5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
COL6A5 MUTATED 0 1 0 2 1 0 3 2 1
COL6A5 WILD-TYPE 11 6 7 7 7 7 8 7 4
'CYP2C18 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10253.  Gene #994: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CYP2C18 MUTATED 0 3 2
CYP2C18 WILD-TYPE 42 170 145
'CYP2C18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S10254.  Gene #994: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CYP2C18 MUTATED 2 1 2
CYP2C18 WILD-TYPE 60 72 73
'CYP2C18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S10255.  Gene #994: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CYP2C18 MUTATED 1 1 2
CYP2C18 WILD-TYPE 69 119 98
'CYP2C18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.94

Table S10256.  Gene #994: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CYP2C18 MUTATED 2 1 0 0 0 1 0 0 0
CYP2C18 WILD-TYPE 39 25 30 29 39 68 20 14 22
'CYP2C18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S10257.  Gene #994: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CYP2C18 MUTATED 2 2 1 0
CYP2C18 WILD-TYPE 98 70 71 121
'CYP2C18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.16

Table S10258.  Gene #994: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CYP2C18 MUTATED 3 0 2 0 0
CYP2C18 WILD-TYPE 56 75 72 119 38

Figure S2824.  Get High-res Image Gene #994: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CYP2C18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S10259.  Gene #994: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CYP2C18 MUTATED 1 2 2 0 0
CYP2C18 WILD-TYPE 50 74 59 71 95
'CYP2C18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.62

Table S10260.  Gene #994: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CYP2C18 MUTATED 2 2 0 1 0 0 0 0 0
CYP2C18 WILD-TYPE 67 46 39 15 53 20 21 38 50
'CYP2C18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S10261.  Gene #994: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CYP2C18 MUTATED 0 1 0 0 1 1
CYP2C18 WILD-TYPE 13 15 14 11 10 8
'CYP2C18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S10262.  Gene #994: 'CYP2C18 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CYP2C18 MUTATED 2 0 0 1 0 0 0 0 0
CYP2C18 WILD-TYPE 9 7 7 8 8 7 11 9 5
'ITGA5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.78

Table S10263.  Gene #995: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ITGA5 MUTATED 3 1 1 1 0
ITGA5 WILD-TYPE 29 17 45 26 23
'ITGA5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S10264.  Gene #995: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ITGA5 MUTATED 3 3 0
ITGA5 WILD-TYPE 40 64 36
'ITGA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.13

Table S10265.  Gene #995: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ITGA5 MUTATED 0 4 12
ITGA5 WILD-TYPE 42 169 135

Figure S2825.  Get High-res Image Gene #995: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ITGA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.92

Table S10266.  Gene #995: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ITGA5 MUTATED 4 2 4
ITGA5 WILD-TYPE 58 71 71
'ITGA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S10267.  Gene #995: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ITGA5 MUTATED 2 8 5
ITGA5 WILD-TYPE 68 112 95
'ITGA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S10268.  Gene #995: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ITGA5 MUTATED 1 1 3 2 0 6 1 0 1
ITGA5 WILD-TYPE 40 25 27 27 39 63 19 14 21
'ITGA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S10269.  Gene #995: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ITGA5 MUTATED 3 6 3 4
ITGA5 WILD-TYPE 97 66 69 117
'ITGA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S10270.  Gene #995: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ITGA5 MUTATED 1 3 5 4 3
ITGA5 WILD-TYPE 58 72 69 115 35
'ITGA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S10271.  Gene #995: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ITGA5 MUTATED 1 4 3 2 4
ITGA5 WILD-TYPE 50 72 58 69 91
'ITGA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S10272.  Gene #995: 'ITGA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ITGA5 MUTATED 3 3 2 0 1 2 1 1 1
ITGA5 WILD-TYPE 66 45 37 16 52 18 20 37 49
'KRTAP5-3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10273.  Gene #996: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KRTAP5-3 MUTATED 0 2 2
KRTAP5-3 WILD-TYPE 42 171 145
'KRTAP5-3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10274.  Gene #996: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KRTAP5-3 MUTATED 1 1 1
KRTAP5-3 WILD-TYPE 61 72 74
'KRTAP5-3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S10275.  Gene #996: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KRTAP5-3 MUTATED 1 0 2
KRTAP5-3 WILD-TYPE 69 120 98
'KRTAP5-3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 0.3

Table S10276.  Gene #996: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KRTAP5-3 MUTATED 3 0 0 0 0 0 0 0 0
KRTAP5-3 WILD-TYPE 38 26 30 29 39 69 20 14 22
'KRTAP5-3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S10277.  Gene #996: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KRTAP5-3 MUTATED 1 0 2 1
KRTAP5-3 WILD-TYPE 99 72 70 120
'KRTAP5-3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.097

Table S10278.  Gene #996: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KRTAP5-3 MUTATED 3 0 0 0 1
KRTAP5-3 WILD-TYPE 56 75 74 119 37

Figure S2826.  Get High-res Image Gene #996: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KRTAP5-3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S10279.  Gene #996: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KRTAP5-3 MUTATED 1 0 2 0 1
KRTAP5-3 WILD-TYPE 50 76 59 71 94
'KRTAP5-3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0936 (Fisher's exact test), Q value = 0.33

Table S10280.  Gene #996: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KRTAP5-3 MUTATED 0 3 0 0 0 0 0 1 0
KRTAP5-3 WILD-TYPE 69 45 39 16 53 20 21 37 50
'NOL9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.95

Table S10281.  Gene #997: 'NOL9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NOL9 MUTATED 0 3 4
NOL9 WILD-TYPE 42 170 143
'NOL9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0808 (Fisher's exact test), Q value = 0.31

Table S10282.  Gene #997: 'NOL9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NOL9 MUTATED 1 0 4
NOL9 WILD-TYPE 61 73 71
'NOL9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.58

Table S10283.  Gene #997: 'NOL9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NOL9 MUTATED 0 3 4
NOL9 WILD-TYPE 70 117 96
'NOL9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S10284.  Gene #997: 'NOL9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NOL9 MUTATED 1 0 1 0 1 4 0 0 0
NOL9 WILD-TYPE 40 26 29 29 38 65 20 14 22
'NOL9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.63

Table S10285.  Gene #997: 'NOL9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NOL9 MUTATED 1 3 2 1
NOL9 WILD-TYPE 99 69 70 120
'NOL9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.47

Table S10286.  Gene #997: 'NOL9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NOL9 MUTATED 1 0 4 2 0
NOL9 WILD-TYPE 58 75 70 117 38
'NOL9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S10287.  Gene #997: 'NOL9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NOL9 MUTATED 1 4 0 1 1
NOL9 WILD-TYPE 50 72 61 70 94
'NOL9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S10288.  Gene #997: 'NOL9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NOL9 MUTATED 2 1 0 2 0 0 0 0 2
NOL9 WILD-TYPE 67 47 39 14 53 20 21 38 48
'RAPGEF6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S10289.  Gene #998: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RAPGEF6 MUTATED 2 0 2 1 0
RAPGEF6 WILD-TYPE 30 18 44 26 23
'RAPGEF6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S10290.  Gene #998: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RAPGEF6 MUTATED 2 3 0
RAPGEF6 WILD-TYPE 41 64 36
'RAPGEF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 0.21

Table S10291.  Gene #998: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RAPGEF6 MUTATED 1 4 12
RAPGEF6 WILD-TYPE 41 169 135

Figure S2827.  Get High-res Image Gene #998: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAPGEF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S10292.  Gene #998: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RAPGEF6 MUTATED 7 2 3
RAPGEF6 WILD-TYPE 55 71 72
'RAPGEF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10293.  Gene #998: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RAPGEF6 MUTATED 3 5 5
RAPGEF6 WILD-TYPE 67 115 95
'RAPGEF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S10294.  Gene #998: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RAPGEF6 MUTATED 2 1 3 0 1 4 1 1 0
RAPGEF6 WILD-TYPE 39 25 27 29 38 65 19 13 22
'RAPGEF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0515 (Fisher's exact test), Q value = 0.24

Table S10295.  Gene #998: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RAPGEF6 MUTATED 2 2 8 5
RAPGEF6 WILD-TYPE 98 70 64 116
'RAPGEF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 0.34

Table S10296.  Gene #998: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RAPGEF6 MUTATED 4 1 7 3 2
RAPGEF6 WILD-TYPE 55 74 67 116 36
'RAPGEF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.47

Table S10297.  Gene #998: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RAPGEF6 MUTATED 1 5 6 1 4
RAPGEF6 WILD-TYPE 50 71 55 70 91
'RAPGEF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0271 (Fisher's exact test), Q value = 0.17

Table S10298.  Gene #998: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RAPGEF6 MUTATED 1 5 1 3 1 2 0 3 1
RAPGEF6 WILD-TYPE 68 43 38 13 52 18 21 35 49

Figure S2828.  Get High-res Image Gene #998: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RAPGEF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S10299.  Gene #998: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RAPGEF6 MUTATED 0 0 0 1 3 0
RAPGEF6 WILD-TYPE 13 16 14 10 8 9

Figure S2829.  Get High-res Image Gene #998: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RAPGEF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.88

Table S10300.  Gene #998: 'RAPGEF6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RAPGEF6 MUTATED 0 0 1 1 1 1 0 0 0
RAPGEF6 WILD-TYPE 11 7 6 8 7 6 11 9 5
'ERCC3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.044 (Fisher's exact test), Q value = 0.22

Table S10301.  Gene #999: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ERCC3 MUTATED 4 1 0 1 0
ERCC3 WILD-TYPE 28 17 46 26 23

Figure S2830.  Get High-res Image Gene #999: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ERCC3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.88

Table S10302.  Gene #999: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ERCC3 MUTATED 3 2 1
ERCC3 WILD-TYPE 40 65 35
'ERCC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.095

Table S10303.  Gene #999: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ERCC3 MUTATED 2 3 13
ERCC3 WILD-TYPE 40 170 134

Figure S2831.  Get High-res Image Gene #999: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ERCC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.29

Table S10304.  Gene #999: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ERCC3 MUTATED 6 1 6
ERCC3 WILD-TYPE 56 72 69
'ERCC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S10305.  Gene #999: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ERCC3 MUTATED 3 5 8
ERCC3 WILD-TYPE 67 115 92
'ERCC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S10306.  Gene #999: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ERCC3 MUTATED 1 1 2 2 3 4 2 0 1
ERCC3 WILD-TYPE 40 25 28 27 36 65 18 14 21
'ERCC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S10307.  Gene #999: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ERCC3 MUTATED 2 5 6 6
ERCC3 WILD-TYPE 98 67 66 115
'ERCC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S10308.  Gene #999: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ERCC3 MUTATED 4 2 7 3 3
ERCC3 WILD-TYPE 55 73 67 116 35
'ERCC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.62

Table S10309.  Gene #999: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ERCC3 MUTATED 0 5 5 3 5
ERCC3 WILD-TYPE 51 71 56 68 90
'ERCC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S10310.  Gene #999: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ERCC3 MUTATED 6 3 0 2 3 1 0 3 0
ERCC3 WILD-TYPE 63 45 39 14 50 19 21 35 50
'ERCC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10311.  Gene #999: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ERCC3 MUTATED 1 1 1 0 1 0
ERCC3 WILD-TYPE 12 15 13 11 10 9
'ERCC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S10312.  Gene #999: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ERCC3 MUTATED 1 1 0 0 1 0 0 1 0
ERCC3 WILD-TYPE 10 6 7 9 7 7 11 8 5
'GABPA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S10313.  Gene #1000: 'GABPA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GABPA MUTATED 2 0 0 2 0
GABPA WILD-TYPE 30 18 46 25 23
'GABPA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S10314.  Gene #1000: 'GABPA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GABPA MUTATED 3 1 0
GABPA WILD-TYPE 40 66 36
'GABPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0787 (Fisher's exact test), Q value = 0.3

Table S10315.  Gene #1000: 'GABPA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GABPA MUTATED 1 2 8
GABPA WILD-TYPE 41 171 139
'GABPA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.93

Table S10316.  Gene #1000: 'GABPA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GABPA MUTATED 1 2 4
GABPA WILD-TYPE 61 71 71
'GABPA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0688 (Fisher's exact test), Q value = 0.28

Table S10317.  Gene #1000: 'GABPA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GABPA MUTATED 0 3 6
GABPA WILD-TYPE 70 117 94
'GABPA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S10318.  Gene #1000: 'GABPA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GABPA MUTATED 0 1 1 0 0 6 0 1 0
GABPA WILD-TYPE 41 25 29 29 39 63 20 13 22
'GABPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S10319.  Gene #1000: 'GABPA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GABPA MUTATED 2 3 2 4
GABPA WILD-TYPE 98 69 70 117
'GABPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S10320.  Gene #1000: 'GABPA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GABPA MUTATED 1 2 4 2 2
GABPA WILD-TYPE 58 73 70 117 36
'GABPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S10321.  Gene #1000: 'GABPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GABPA MUTATED 1 3 2 1 3
GABPA WILD-TYPE 50 73 59 70 92
'GABPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0257 (Fisher's exact test), Q value = 0.17

Table S10322.  Gene #1000: 'GABPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GABPA MUTATED 0 1 2 2 1 2 1 1 0
GABPA WILD-TYPE 69 47 37 14 52 18 20 37 50

Figure S2832.  Get High-res Image Gene #1000: 'GABPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GABPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S10323.  Gene #1000: 'GABPA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GABPA MUTATED 1 0 1 1 1 0
GABPA WILD-TYPE 12 16 13 10 10 9
'GABPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.74

Table S10324.  Gene #1000: 'GABPA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GABPA MUTATED 0 0 0 1 0 1 0 1 1
GABPA WILD-TYPE 11 7 7 8 8 6 11 8 4
'NXF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.96

Table S10325.  Gene #1001: 'NXF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NXF3 MUTATED 0 6 4
NXF3 WILD-TYPE 42 167 143
'NXF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S10326.  Gene #1001: 'NXF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NXF3 MUTATED 2 6 1
NXF3 WILD-TYPE 60 67 74
'NXF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.5

Table S10327.  Gene #1001: 'NXF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NXF3 MUTATED 0 2 4
NXF3 WILD-TYPE 70 118 96
'NXF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S10328.  Gene #1001: 'NXF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NXF3 MUTATED 1 0 1 0 0 3 0 0 1
NXF3 WILD-TYPE 40 26 29 29 39 66 20 14 21
'NXF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S10329.  Gene #1001: 'NXF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NXF3 MUTATED 6 1 2 1
NXF3 WILD-TYPE 94 71 70 120
'NXF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 0.21

Table S10330.  Gene #1001: 'NXF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NXF3 MUTATED 2 5 2 0 1
NXF3 WILD-TYPE 57 70 72 119 37

Figure S2833.  Get High-res Image Gene #1001: 'NXF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NXF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S10331.  Gene #1001: 'NXF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NXF3 MUTATED 5 2 1 2 0
NXF3 WILD-TYPE 46 74 60 69 95

Figure S2834.  Get High-res Image Gene #1001: 'NXF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NXF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.51

Table S10332.  Gene #1001: 'NXF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NXF3 MUTATED 4 1 0 1 1 2 0 1 0
NXF3 WILD-TYPE 65 47 39 15 52 18 21 37 50
'LRIG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00104 (Fisher's exact test), Q value = 0.025

Table S10333.  Gene #1002: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LRIG2 MUTATED 0 0 9
LRIG2 WILD-TYPE 42 173 138

Figure S2835.  Get High-res Image Gene #1002: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LRIG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 0.24

Table S10334.  Gene #1002: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LRIG2 MUTATED 2 0 5
LRIG2 WILD-TYPE 60 73 70

Figure S2836.  Get High-res Image Gene #1002: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LRIG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S10335.  Gene #1002: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LRIG2 MUTATED 1 4 3
LRIG2 WILD-TYPE 69 116 97
'LRIG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0836 (Fisher's exact test), Q value = 0.31

Table S10336.  Gene #1002: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LRIG2 MUTATED 0 1 0 1 2 1 3 0 0
LRIG2 WILD-TYPE 41 25 30 28 37 68 17 14 22
'LRIG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.37

Table S10337.  Gene #1002: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LRIG2 MUTATED 0 4 2 3
LRIG2 WILD-TYPE 100 68 70 118
'LRIG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0989 (Fisher's exact test), Q value = 0.34

Table S10338.  Gene #1002: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LRIG2 MUTATED 0 2 4 1 2
LRIG2 WILD-TYPE 59 73 70 118 36
'LRIG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0663 (Fisher's exact test), Q value = 0.28

Table S10339.  Gene #1002: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LRIG2 MUTATED 1 5 0 0 3
LRIG2 WILD-TYPE 50 71 61 71 92
'LRIG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S10340.  Gene #1002: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LRIG2 MUTATED 3 0 0 1 3 0 0 1 1
LRIG2 WILD-TYPE 66 48 39 15 50 20 21 37 49
'BRSK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00094 (Fisher's exact test), Q value = 0.024

Table S10341.  Gene #1003: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BRSK1 MUTATED 7 0 1 0 0
BRSK1 WILD-TYPE 25 18 45 27 23

Figure S2837.  Get High-res Image Gene #1003: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BRSK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00164 (Fisher's exact test), Q value = 0.034

Table S10342.  Gene #1003: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BRSK1 MUTATED 7 1 0
BRSK1 WILD-TYPE 36 66 36

Figure S2838.  Get High-res Image Gene #1003: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BRSK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.55

Table S10343.  Gene #1003: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BRSK1 MUTATED 2 5 10
BRSK1 WILD-TYPE 40 168 137
'BRSK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.49

Table S10344.  Gene #1003: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BRSK1 MUTATED 1 2 6
BRSK1 WILD-TYPE 61 71 69
'BRSK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S10345.  Gene #1003: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BRSK1 MUTATED 2 7 4
BRSK1 WILD-TYPE 68 113 96
'BRSK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S10346.  Gene #1003: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BRSK1 MUTATED 1 0 1 2 4 2 2 1 0
BRSK1 WILD-TYPE 40 26 29 27 35 67 18 13 22
'BRSK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.55

Table S10347.  Gene #1003: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BRSK1 MUTATED 3 5 1 8
BRSK1 WILD-TYPE 97 67 71 113
'BRSK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00053 (Fisher's exact test), Q value = 0.017

Table S10348.  Gene #1003: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BRSK1 MUTATED 2 2 5 1 7
BRSK1 WILD-TYPE 57 73 69 118 31

Figure S2839.  Get High-res Image Gene #1003: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BRSK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S10349.  Gene #1003: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BRSK1 MUTATED 2 5 0 3 7
BRSK1 WILD-TYPE 49 71 61 68 88
'BRSK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S10350.  Gene #1003: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BRSK1 MUTATED 1 1 0 3 4 0 0 8 0
BRSK1 WILD-TYPE 68 47 39 13 49 20 21 30 50

Figure S2840.  Get High-res Image Gene #1003: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BRSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 0.34

Table S10351.  Gene #1003: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BRSK1 MUTATED 0 0 0 2 1 0
BRSK1 WILD-TYPE 13 16 14 9 10 9
'BRSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S10352.  Gene #1003: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BRSK1 MUTATED 0 0 0 1 0 0 1 1 0
BRSK1 WILD-TYPE 11 7 7 8 8 7 10 8 5
'E2F5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.79

Table S10353.  Gene #1004: 'E2F5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
E2F5 MUTATED 1 2 4
E2F5 WILD-TYPE 41 171 143
'E2F5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 0.21

Table S10354.  Gene #1004: 'E2F5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
E2F5 MUTATED 4 0 1
E2F5 WILD-TYPE 58 73 74

Figure S2841.  Get High-res Image Gene #1004: 'E2F5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'E2F5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0523 (Fisher's exact test), Q value = 0.25

Table S10355.  Gene #1004: 'E2F5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
E2F5 MUTATED 0 1 5
E2F5 WILD-TYPE 70 119 95
'E2F5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S10356.  Gene #1004: 'E2F5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
E2F5 MUTATED 1 0 0 0 1 2 1 1 0
E2F5 WILD-TYPE 40 26 30 29 38 67 19 13 22
'E2F5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S10357.  Gene #1004: 'E2F5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
E2F5 MUTATED 2 2 2 1
E2F5 WILD-TYPE 98 70 70 120
'E2F5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S10358.  Gene #1004: 'E2F5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
E2F5 MUTATED 2 2 1 1 1
E2F5 WILD-TYPE 57 73 73 118 37
'E2F5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.97

Table S10359.  Gene #1004: 'E2F5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
E2F5 MUTATED 1 2 2 0 2
E2F5 WILD-TYPE 50 74 59 71 93
'E2F5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S10360.  Gene #1004: 'E2F5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
E2F5 MUTATED 1 2 1 0 0 0 1 1 1
E2F5 WILD-TYPE 68 46 38 16 53 20 20 37 49
'SEC31A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S10361.  Gene #1005: 'SEC31A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SEC31A MUTATED 2 0 0 0 1
SEC31A WILD-TYPE 30 18 46 27 22
'SEC31A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S10362.  Gene #1005: 'SEC31A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SEC31A MUTATED 2 0 1
SEC31A WILD-TYPE 41 67 35
'SEC31A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S10363.  Gene #1005: 'SEC31A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SEC31A MUTATED 1 2 10
SEC31A WILD-TYPE 41 171 137

Figure S2842.  Get High-res Image Gene #1005: 'SEC31A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SEC31A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S10364.  Gene #1005: 'SEC31A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SEC31A MUTATED 4 1 5
SEC31A WILD-TYPE 58 72 70
'SEC31A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S10365.  Gene #1005: 'SEC31A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SEC31A MUTATED 3 3 4
SEC31A WILD-TYPE 67 117 96
'SEC31A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S10366.  Gene #1005: 'SEC31A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SEC31A MUTATED 2 1 0 1 1 2 1 2 0
SEC31A WILD-TYPE 39 25 30 28 38 67 19 12 22
'SEC31A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.77

Table S10367.  Gene #1005: 'SEC31A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SEC31A MUTATED 2 4 4 3
SEC31A WILD-TYPE 98 68 68 118
'SEC31A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 0.3

Table S10368.  Gene #1005: 'SEC31A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SEC31A MUTATED 2 2 6 1 2
SEC31A WILD-TYPE 57 73 68 118 36
'SEC31A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S10369.  Gene #1005: 'SEC31A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SEC31A MUTATED 1 5 3 2 2
SEC31A WILD-TYPE 50 71 58 69 93
'SEC31A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0994 (Fisher's exact test), Q value = 0.34

Table S10370.  Gene #1005: 'SEC31A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SEC31A MUTATED 3 3 1 3 1 0 0 2 0
SEC31A WILD-TYPE 66 45 38 13 52 20 21 36 50
'SEC31A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.19

Table S10371.  Gene #1005: 'SEC31A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SEC31A MUTATED 0 1 0 0 3 0
SEC31A WILD-TYPE 13 15 14 11 8 9

Figure S2843.  Get High-res Image Gene #1005: 'SEC31A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SEC31A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.55

Table S10372.  Gene #1005: 'SEC31A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SEC31A MUTATED 0 1 0 2 1 0 0 0 0
SEC31A WILD-TYPE 11 6 7 7 7 7 11 9 5
'CTSZ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S10373.  Gene #1006: 'CTSZ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CTSZ MUTATED 1 3 2
CTSZ WILD-TYPE 41 170 145
'CTSZ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S10374.  Gene #1006: 'CTSZ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CTSZ MUTATED 1 3 0
CTSZ WILD-TYPE 61 70 75
'CTSZ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S10375.  Gene #1006: 'CTSZ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CTSZ MUTATED 1 2 3
CTSZ WILD-TYPE 69 118 97
'CTSZ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S10376.  Gene #1006: 'CTSZ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CTSZ MUTATED 1 0 0 1 2 1 0 0 1
CTSZ WILD-TYPE 40 26 30 28 37 68 20 14 21
'CTSZ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S10377.  Gene #1006: 'CTSZ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CTSZ MUTATED 1 1 2 2
CTSZ WILD-TYPE 99 71 70 119
'CTSZ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S10378.  Gene #1006: 'CTSZ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CTSZ MUTATED 2 1 1 1 1
CTSZ WILD-TYPE 57 74 73 118 37
'CTSZ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.73

Table S10379.  Gene #1006: 'CTSZ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CTSZ MUTATED 0 1 3 1 1
CTSZ WILD-TYPE 51 75 58 70 94
'CTSZ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S10380.  Gene #1006: 'CTSZ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CTSZ MUTATED 2 2 0 0 0 0 0 1 1
CTSZ WILD-TYPE 67 46 39 16 53 20 21 37 49
'NUFIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00211 (Fisher's exact test), Q value = 0.039

Table S10381.  Gene #1007: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NUFIP1 MUTATED 0 0 8
NUFIP1 WILD-TYPE 42 173 139

Figure S2844.  Get High-res Image Gene #1007: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NUFIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S10382.  Gene #1007: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NUFIP1 MUTATED 3 0 3
NUFIP1 WILD-TYPE 59 73 72
'NUFIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S10383.  Gene #1007: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NUFIP1 MUTATED 1 2 3
NUFIP1 WILD-TYPE 69 118 97
'NUFIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S10384.  Gene #1007: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NUFIP1 MUTATED 1 1 2 0 0 2 0 0 0
NUFIP1 WILD-TYPE 40 25 28 29 39 67 20 14 22
'NUFIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0814 (Fisher's exact test), Q value = 0.31

Table S10385.  Gene #1007: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NUFIP1 MUTATED 0 4 1 3
NUFIP1 WILD-TYPE 100 68 71 118
'NUFIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S10386.  Gene #1007: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NUFIP1 MUTATED 1 2 2 2 1
NUFIP1 WILD-TYPE 58 73 72 117 37
'NUFIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S10387.  Gene #1007: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NUFIP1 MUTATED 0 3 1 0 4
NUFIP1 WILD-TYPE 51 73 60 71 91
'NUFIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S10388.  Gene #1007: 'NUFIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NUFIP1 MUTATED 0 1 0 2 1 1 0 1 2
NUFIP1 WILD-TYPE 69 47 39 14 52 19 21 37 48
'OR5H15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.96

Table S10389.  Gene #1008: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR5H15 MUTATED 1 2 2
OR5H15 WILD-TYPE 41 171 145
'OR5H15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S10390.  Gene #1008: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR5H15 MUTATED 2 0 3
OR5H15 WILD-TYPE 60 73 72
'OR5H15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S10391.  Gene #1008: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR5H15 MUTATED 1 1 3
OR5H15 WILD-TYPE 69 119 97
'OR5H15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S10392.  Gene #1008: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR5H15 MUTATED 1 0 0 1 0 2 1 0 0
OR5H15 WILD-TYPE 40 26 30 28 39 67 19 14 22
'OR5H15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S10393.  Gene #1008: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR5H15 MUTATED 1 2 2 0
OR5H15 WILD-TYPE 99 70 70 121
'OR5H15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0354 (Fisher's exact test), Q value = 0.2

Table S10394.  Gene #1008: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR5H15 MUTATED 2 0 3 0 0
OR5H15 WILD-TYPE 57 75 71 119 38

Figure S2845.  Get High-res Image Gene #1008: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR5H15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S10395.  Gene #1008: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR5H15 MUTATED 1 2 1 0 1
OR5H15 WILD-TYPE 50 74 60 71 94
'OR5H15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0228 (Fisher's exact test), Q value = 0.16

Table S10396.  Gene #1008: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR5H15 MUTATED 0 4 0 0 0 0 0 1 0
OR5H15 WILD-TYPE 69 44 39 16 53 20 21 37 50

Figure S2846.  Get High-res Image Gene #1008: 'OR5H15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TPR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S10397.  Gene #1009: 'TPR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TPR MUTATED 5 0 1 4 0
TPR WILD-TYPE 27 18 45 23 23

Figure S2847.  Get High-res Image Gene #1009: 'TPR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TPR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0811 (Fisher's exact test), Q value = 0.31

Table S10398.  Gene #1009: 'TPR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TPR MUTATED 6 2 2
TPR WILD-TYPE 37 65 34
'TPR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00739 (Fisher's exact test), Q value = 0.08

Table S10399.  Gene #1009: 'TPR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TPR MUTATED 2 5 17
TPR WILD-TYPE 40 168 130

Figure S2848.  Get High-res Image Gene #1009: 'TPR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TPR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.97

Table S10400.  Gene #1009: 'TPR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TPR MUTATED 4 3 6
TPR WILD-TYPE 58 70 69
'TPR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S10401.  Gene #1009: 'TPR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TPR MUTATED 2 10 5
TPR WILD-TYPE 68 110 95
'TPR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.54

Table S10402.  Gene #1009: 'TPR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TPR MUTATED 1 1 2 4 4 2 0 2 1
TPR WILD-TYPE 40 25 28 25 35 67 20 12 21
'TPR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.31

Table S10403.  Gene #1009: 'TPR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TPR MUTATED 2 6 4 12
TPR WILD-TYPE 98 66 68 109
'TPR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.14

Table S10404.  Gene #1009: 'TPR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TPR MUTATED 1 3 7 6 7
TPR WILD-TYPE 58 72 67 113 31

Figure S2849.  Get High-res Image Gene #1009: 'TPR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TPR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.92

Table S10405.  Gene #1009: 'TPR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TPR MUTATED 2 5 2 5 9
TPR WILD-TYPE 49 71 59 66 86
'TPR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0584 (Fisher's exact test), Q value = 0.26

Table S10406.  Gene #1009: 'TPR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TPR MUTATED 3 2 0 1 6 1 0 7 3
TPR WILD-TYPE 66 46 39 15 47 19 21 31 47
'TPR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0916 (Fisher's exact test), Q value = 0.33

Table S10407.  Gene #1009: 'TPR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TPR MUTATED 0 0 2 0 2 0
TPR WILD-TYPE 13 16 12 11 9 9
'TPR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S10408.  Gene #1009: 'TPR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TPR MUTATED 0 0 0 1 2 1 0 0 0
TPR WILD-TYPE 11 7 7 8 6 6 11 9 5
'BAZ2B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0982 (Fisher's exact test), Q value = 0.34

Table S10409.  Gene #1010: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BAZ2B MUTATED 3 0 0 1 0
BAZ2B WILD-TYPE 29 18 46 26 23
'BAZ2B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S10410.  Gene #1010: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BAZ2B MUTATED 3 1 0
BAZ2B WILD-TYPE 40 66 36
'BAZ2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 0.19

Table S10411.  Gene #1010: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BAZ2B MUTATED 0 4 11
BAZ2B WILD-TYPE 42 169 136

Figure S2850.  Get High-res Image Gene #1010: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BAZ2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S10412.  Gene #1010: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BAZ2B MUTATED 4 4 3
BAZ2B WILD-TYPE 58 69 72
'BAZ2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0638 (Fisher's exact test), Q value = 0.27

Table S10413.  Gene #1010: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BAZ2B MUTATED 0 6 7
BAZ2B WILD-TYPE 70 114 93
'BAZ2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.994 (Fisher's exact test), Q value = 1

Table S10414.  Gene #1010: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BAZ2B MUTATED 2 1 1 1 2 5 0 0 1
BAZ2B WILD-TYPE 39 25 29 28 37 64 20 14 21
'BAZ2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S10415.  Gene #1010: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BAZ2B MUTATED 2 4 4 5
BAZ2B WILD-TYPE 98 68 68 116
'BAZ2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S10416.  Gene #1010: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BAZ2B MUTATED 2 3 5 2 3
BAZ2B WILD-TYPE 57 72 69 117 35
'BAZ2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S10417.  Gene #1010: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BAZ2B MUTATED 3 5 2 0 5
BAZ2B WILD-TYPE 48 71 59 71 90
'BAZ2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0585 (Fisher's exact test), Q value = 0.26

Table S10418.  Gene #1010: 'BAZ2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BAZ2B MUTATED 1 3 1 3 1 2 0 3 1
BAZ2B WILD-TYPE 68 45 38 13 52 18 21 35 49
'USP44 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00534 (Fisher's exact test), Q value = 0.069

Table S10419.  Gene #1011: 'USP44 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
USP44 MUTATED 5 0 0 3 0
USP44 WILD-TYPE 27 18 46 24 23

Figure S2851.  Get High-res Image Gene #1011: 'USP44 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'USP44 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 0.13

Table S10420.  Gene #1011: 'USP44 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
USP44 MUTATED 6 1 1
USP44 WILD-TYPE 37 66 35

Figure S2852.  Get High-res Image Gene #1011: 'USP44 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'USP44 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S10421.  Gene #1011: 'USP44 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
USP44 MUTATED 1 3 12
USP44 WILD-TYPE 41 170 135

Figure S2853.  Get High-res Image Gene #1011: 'USP44 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP44 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.73

Table S10422.  Gene #1011: 'USP44 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
USP44 MUTATED 2 1 4
USP44 WILD-TYPE 60 72 71
'USP44 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.98

Table S10423.  Gene #1011: 'USP44 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
USP44 MUTATED 2 5 6
USP44 WILD-TYPE 68 115 94
'USP44 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.98

Table S10424.  Gene #1011: 'USP44 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
USP44 MUTATED 0 1 2 1 3 5 0 0 1
USP44 WILD-TYPE 41 25 28 28 36 64 20 14 21
'USP44 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S10425.  Gene #1011: 'USP44 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
USP44 MUTATED 2 4 1 9
USP44 WILD-TYPE 98 68 71 112
'USP44 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0839 (Fisher's exact test), Q value = 0.31

Table S10426.  Gene #1011: 'USP44 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
USP44 MUTATED 2 1 4 4 5
USP44 WILD-TYPE 57 74 70 115 33
'USP44 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S10427.  Gene #1011: 'USP44 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
USP44 MUTATED 1 5 1 1 6
USP44 WILD-TYPE 50 71 60 70 89
'USP44 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.097

Table S10428.  Gene #1011: 'USP44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
USP44 MUTATED 1 1 0 3 3 1 1 4 0
USP44 WILD-TYPE 68 47 39 13 50 19 20 34 50

Figure S2854.  Get High-res Image Gene #1011: 'USP44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'USP44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S10429.  Gene #1011: 'USP44 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
USP44 MUTATED 2 1 0 0 1 0
USP44 WILD-TYPE 11 15 14 11 10 9
'USP44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.34

Table S10430.  Gene #1011: 'USP44 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
USP44 MUTATED 0 1 0 2 0 0 0 0 1
USP44 WILD-TYPE 11 6 7 7 8 7 11 9 4
'EIF4G2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.18

Table S10431.  Gene #1012: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EIF4G2 MUTATED 4 0 0 2 0
EIF4G2 WILD-TYPE 28 18 46 25 23

Figure S2855.  Get High-res Image Gene #1012: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EIF4G2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S10432.  Gene #1012: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EIF4G2 MUTATED 4 1 1
EIF4G2 WILD-TYPE 39 66 35
'EIF4G2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00212 (Fisher's exact test), Q value = 0.039

Table S10433.  Gene #1012: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EIF4G2 MUTATED 3 1 11
EIF4G2 WILD-TYPE 39 172 136

Figure S2856.  Get High-res Image Gene #1012: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EIF4G2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S10434.  Gene #1012: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EIF4G2 MUTATED 3 1 5
EIF4G2 WILD-TYPE 59 72 70
'EIF4G2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S10435.  Gene #1012: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EIF4G2 MUTATED 0 4 8
EIF4G2 WILD-TYPE 70 116 92

Figure S2857.  Get High-res Image Gene #1012: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'EIF4G2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S10436.  Gene #1012: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EIF4G2 MUTATED 1 0 1 1 2 6 1 0 0
EIF4G2 WILD-TYPE 40 26 29 28 37 63 19 14 22
'EIF4G2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S10437.  Gene #1012: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EIF4G2 MUTATED 3 4 2 6
EIF4G2 WILD-TYPE 97 68 70 115
'EIF4G2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S10438.  Gene #1012: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EIF4G2 MUTATED 3 2 4 2 4
EIF4G2 WILD-TYPE 56 73 70 117 34
'EIF4G2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S10439.  Gene #1012: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EIF4G2 MUTATED 2 4 1 3 4
EIF4G2 WILD-TYPE 49 72 60 68 91
'EIF4G2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S10440.  Gene #1012: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EIF4G2 MUTATED 1 2 0 2 4 2 1 1 1
EIF4G2 WILD-TYPE 68 46 39 14 49 18 20 37 49
'EIF4G2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S10441.  Gene #1012: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EIF4G2 MUTATED 1 1 0 0 1 0
EIF4G2 WILD-TYPE 12 15 14 11 10 9
'EIF4G2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S10442.  Gene #1012: 'EIF4G2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EIF4G2 MUTATED 0 1 0 0 0 0 1 1 0
EIF4G2 WILD-TYPE 11 6 7 9 8 7 10 8 5
'EYS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00208 (Fisher's exact test), Q value = 0.039

Table S10443.  Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EYS MUTATED 7 0 0 3 1
EYS WILD-TYPE 25 18 46 24 22

Figure S2858.  Get High-res Image Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EYS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00064 (Fisher's exact test), Q value = 0.019

Table S10444.  Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EYS MUTATED 9 1 1
EYS WILD-TYPE 34 66 35

Figure S2859.  Get High-res Image Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EYS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00137 (Fisher's exact test), Q value = 0.03

Table S10445.  Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EYS MUTATED 2 9 25
EYS WILD-TYPE 40 164 122

Figure S2860.  Get High-res Image Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EYS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S10446.  Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EYS MUTATED 11 7 10
EYS WILD-TYPE 51 66 65
'EYS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S10447.  Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EYS MUTATED 5 14 13
EYS WILD-TYPE 65 106 87
'EYS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0418 (Fisher's exact test), Q value = 0.22

Table S10448.  Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EYS MUTATED 2 1 0 6 3 12 4 2 2
EYS WILD-TYPE 39 25 30 23 36 57 16 12 20

Figure S2861.  Get High-res Image Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'EYS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0952 (Fisher's exact test), Q value = 0.34

Table S10449.  Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EYS MUTATED 6 11 11 10
EYS WILD-TYPE 94 61 61 111
'EYS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0072

Table S10450.  Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EYS MUTATED 7 5 15 3 8
EYS WILD-TYPE 52 70 59 116 30

Figure S2862.  Get High-res Image Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EYS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0785 (Fisher's exact test), Q value = 0.3

Table S10451.  Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EYS MUTATED 2 14 7 6 7
EYS WILD-TYPE 49 62 54 65 88
'EYS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0525 (Fisher's exact test), Q value = 0.25

Table S10452.  Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EYS MUTATED 9 6 2 5 5 1 1 6 1
EYS WILD-TYPE 60 42 37 11 48 19 20 32 49
'EYS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S10453.  Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EYS MUTATED 2 0 4 2 2 2
EYS WILD-TYPE 11 16 10 9 9 7
'EYS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0724 (Fisher's exact test), Q value = 0.29

Table S10454.  Gene #1013: 'EYS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EYS MUTATED 1 0 0 1 4 0 3 3 0
EYS WILD-TYPE 10 7 7 8 4 7 8 6 5
'ST8SIA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00042 (Fisher's exact test), Q value = 0.014

Table S10455.  Gene #1014: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ST8SIA6 MUTATED 0 0 10
ST8SIA6 WILD-TYPE 42 173 137

Figure S2863.  Get High-res Image Gene #1014: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ST8SIA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 0.28

Table S10456.  Gene #1014: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ST8SIA6 MUTATED 3 0 5
ST8SIA6 WILD-TYPE 59 73 70
'ST8SIA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S10457.  Gene #1014: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ST8SIA6 MUTATED 1 3 3
ST8SIA6 WILD-TYPE 69 117 97
'ST8SIA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S10458.  Gene #1014: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ST8SIA6 MUTATED 1 0 2 1 1 2 0 0 0
ST8SIA6 WILD-TYPE 40 26 28 28 38 67 20 14 22
'ST8SIA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.15

Table S10459.  Gene #1014: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ST8SIA6 MUTATED 0 5 3 2
ST8SIA6 WILD-TYPE 100 67 69 119

Figure S2864.  Get High-res Image Gene #1014: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ST8SIA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0503 (Fisher's exact test), Q value = 0.24

Table S10460.  Gene #1014: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ST8SIA6 MUTATED 1 1 6 1 1
ST8SIA6 WILD-TYPE 58 74 68 118 37
'ST8SIA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S10461.  Gene #1014: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ST8SIA6 MUTATED 0 3 3 0 3
ST8SIA6 WILD-TYPE 51 73 58 71 92
'ST8SIA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S10462.  Gene #1014: 'ST8SIA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ST8SIA6 MUTATED 1 2 0 2 1 1 0 1 1
ST8SIA6 WILD-TYPE 68 46 39 14 52 19 21 37 49
'C6ORF222 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S10463.  Gene #1015: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C6ORF222 MUTATED 1 0 0 2 0
C6ORF222 WILD-TYPE 31 18 46 25 23
'C6ORF222 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S10464.  Gene #1015: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C6ORF222 MUTATED 2 1 0
C6ORF222 WILD-TYPE 41 66 36
'C6ORF222 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.1

Table S10465.  Gene #1015: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C6ORF222 MUTATED 0 0 6
C6ORF222 WILD-TYPE 42 173 141

Figure S2865.  Get High-res Image Gene #1015: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C6ORF222 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S10466.  Gene #1015: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C6ORF222 MUTATED 0 0 3
C6ORF222 WILD-TYPE 62 73 72
'C6ORF222 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S10467.  Gene #1015: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C6ORF222 MUTATED 0 2 3
C6ORF222 WILD-TYPE 70 118 97
'C6ORF222 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S10468.  Gene #1015: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C6ORF222 MUTATED 0 0 1 1 1 2 0 0 0
C6ORF222 WILD-TYPE 41 26 29 28 38 67 20 14 22
'C6ORF222 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 0.31

Table S10469.  Gene #1015: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C6ORF222 MUTATED 0 3 0 3
C6ORF222 WILD-TYPE 100 69 72 118
'C6ORF222 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0581 (Fisher's exact test), Q value = 0.26

Table S10470.  Gene #1015: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C6ORF222 MUTATED 0 0 3 1 2
C6ORF222 WILD-TYPE 59 75 71 118 36
'C6ORF222 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S10471.  Gene #1015: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C6ORF222 MUTATED 0 3 0 0 2
C6ORF222 WILD-TYPE 51 73 61 71 93
'C6ORF222 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.14

Table S10472.  Gene #1015: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C6ORF222 MUTATED 1 0 0 2 0 1 0 1 0
C6ORF222 WILD-TYPE 68 48 39 14 53 19 21 37 50

Figure S2866.  Get High-res Image Gene #1015: 'C6ORF222 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TPK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.96

Table S10473.  Gene #1016: 'TPK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TPK1 MUTATED 1 2 2
TPK1 WILD-TYPE 41 171 145
'TPK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S10474.  Gene #1016: 'TPK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TPK1 MUTATED 0 2 3
TPK1 WILD-TYPE 62 71 72
'TPK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.92

Table S10475.  Gene #1016: 'TPK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TPK1 MUTATED 0 1 2
TPK1 WILD-TYPE 70 119 98
'TPK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S10476.  Gene #1016: 'TPK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TPK1 MUTATED 1 0 0 0 0 2 0 0 0
TPK1 WILD-TYPE 40 26 30 29 39 67 20 14 22
'TPK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S10477.  Gene #1016: 'TPK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TPK1 MUTATED 1 2 2 0
TPK1 WILD-TYPE 99 70 70 121
'TPK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S10478.  Gene #1016: 'TPK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TPK1 MUTATED 2 2 1 0 0
TPK1 WILD-TYPE 57 73 73 119 38
'TPK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S10479.  Gene #1016: 'TPK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TPK1 MUTATED 0 2 2 1 0
TPK1 WILD-TYPE 51 74 59 70 95
'TPK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S10480.  Gene #1016: 'TPK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TPK1 MUTATED 3 0 0 0 1 1 0 0 0
TPK1 WILD-TYPE 66 48 39 16 52 19 21 38 50
'ZNF555 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00941 (Fisher's exact test), Q value = 0.091

Table S10481.  Gene #1017: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF555 MUTATED 4 0 0 0 0
ZNF555 WILD-TYPE 28 18 46 27 23

Figure S2867.  Get High-res Image Gene #1017: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF555 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00976 (Fisher's exact test), Q value = 0.093

Table S10482.  Gene #1017: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF555 MUTATED 4 0 0
ZNF555 WILD-TYPE 39 67 36

Figure S2868.  Get High-res Image Gene #1017: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZNF555 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.21

Table S10483.  Gene #1017: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF555 MUTATED 0 1 7
ZNF555 WILD-TYPE 42 172 140

Figure S2869.  Get High-res Image Gene #1017: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF555 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S10484.  Gene #1017: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF555 MUTATED 1 0 3
ZNF555 WILD-TYPE 61 73 72
'ZNF555 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S10485.  Gene #1017: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF555 MUTATED 0 5 2
ZNF555 WILD-TYPE 70 115 98
'ZNF555 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S10486.  Gene #1017: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF555 MUTATED 0 2 0 0 1 2 1 0 1
ZNF555 WILD-TYPE 41 24 30 29 38 67 19 14 21
'ZNF555 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S10487.  Gene #1017: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF555 MUTATED 0 3 0 5
ZNF555 WILD-TYPE 100 69 72 116

Figure S2870.  Get High-res Image Gene #1017: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF555 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S10488.  Gene #1017: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF555 MUTATED 0 2 1 1 4
ZNF555 WILD-TYPE 59 73 73 118 34

Figure S2871.  Get High-res Image Gene #1017: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF555 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S10489.  Gene #1017: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF555 MUTATED 2 0 2 0 4
ZNF555 WILD-TYPE 49 76 59 71 91
'ZNF555 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S10490.  Gene #1017: 'ZNF555 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF555 MUTATED 1 1 0 0 0 2 1 2 1
ZNF555 WILD-TYPE 68 47 39 16 53 18 20 36 49
'CASP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.19

Table S10491.  Gene #1018: 'CASP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CASP1 MUTATED 1 0 5
CASP1 WILD-TYPE 41 173 142

Figure S2872.  Get High-res Image Gene #1018: 'CASP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CASP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S10492.  Gene #1018: 'CASP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CASP1 MUTATED 1 0 3
CASP1 WILD-TYPE 61 73 72
'CASP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S10493.  Gene #1018: 'CASP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CASP1 MUTATED 0 2 1
CASP1 WILD-TYPE 70 118 99
'CASP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S10494.  Gene #1018: 'CASP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CASP1 MUTATED 0 0 0 1 1 1 0 0 0
CASP1 WILD-TYPE 41 26 30 28 38 68 20 14 22
'CASP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S10495.  Gene #1018: 'CASP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CASP1 MUTATED 0 3 1 2
CASP1 WILD-TYPE 100 69 71 119
'CASP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00323 (Fisher's exact test), Q value = 0.05

Table S10496.  Gene #1018: 'CASP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CASP1 MUTATED 0 0 4 0 2
CASP1 WILD-TYPE 59 75 70 119 36

Figure S2873.  Get High-res Image Gene #1018: 'CASP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CASP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S10497.  Gene #1018: 'CASP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CASP1 MUTATED 0 4 0 1 1
CASP1 WILD-TYPE 51 72 61 70 94
'CASP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00694 (Fisher's exact test), Q value = 0.078

Table S10498.  Gene #1018: 'CASP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CASP1 MUTATED 1 0 0 3 1 0 0 1 0
CASP1 WILD-TYPE 68 48 39 13 52 20 21 37 50

Figure S2874.  Get High-res Image Gene #1018: 'CASP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IFNA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S10499.  Gene #1019: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IFNA2 MUTATED 2 0 0 1 0
IFNA2 WILD-TYPE 30 18 46 26 23
'IFNA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0379 (Fisher's exact test), Q value = 0.21

Table S10500.  Gene #1019: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IFNA2 MUTATED 3 0 0
IFNA2 WILD-TYPE 40 67 36

Figure S2875.  Get High-res Image Gene #1019: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IFNA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.2

Table S10501.  Gene #1019: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IFNA2 MUTATED 1 1 7
IFNA2 WILD-TYPE 41 172 140

Figure S2876.  Get High-res Image Gene #1019: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IFNA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10502.  Gene #1019: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IFNA2 MUTATED 2 2 2
IFNA2 WILD-TYPE 60 71 73
'IFNA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S10503.  Gene #1019: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IFNA2 MUTATED 0 3 5
IFNA2 WILD-TYPE 70 117 95
'IFNA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.54

Table S10504.  Gene #1019: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IFNA2 MUTATED 0 1 0 1 0 5 0 1 0
IFNA2 WILD-TYPE 41 25 30 28 39 64 20 13 22
'IFNA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S10505.  Gene #1019: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IFNA2 MUTATED 2 3 1 3
IFNA2 WILD-TYPE 98 69 71 118
'IFNA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.098 (Fisher's exact test), Q value = 0.34

Table S10506.  Gene #1019: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IFNA2 MUTATED 0 2 4 1 2
IFNA2 WILD-TYPE 59 73 70 118 36
'IFNA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S10507.  Gene #1019: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IFNA2 MUTATED 2 2 1 1 2
IFNA2 WILD-TYPE 49 74 60 70 93
'IFNA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S10508.  Gene #1019: 'IFNA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IFNA2 MUTATED 3 1 1 1 0 0 1 1 0
IFNA2 WILD-TYPE 66 47 38 15 53 20 20 37 50
'IL1RL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S10509.  Gene #1020: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IL1RL1 MUTATED 2 3 9
IL1RL1 WILD-TYPE 40 170 138
'IL1RL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S10510.  Gene #1020: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IL1RL1 MUTATED 7 2 3
IL1RL1 WILD-TYPE 55 71 72
'IL1RL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S10511.  Gene #1020: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IL1RL1 MUTATED 2 4 7
IL1RL1 WILD-TYPE 68 116 93
'IL1RL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S10512.  Gene #1020: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IL1RL1 MUTATED 2 0 1 1 1 5 1 1 1
IL1RL1 WILD-TYPE 39 26 29 28 38 64 19 13 21
'IL1RL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.2

Table S10513.  Gene #1020: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IL1RL1 MUTATED 2 3 7 2
IL1RL1 WILD-TYPE 98 69 65 119

Figure S2877.  Get High-res Image Gene #1020: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IL1RL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00603 (Fisher's exact test), Q value = 0.073

Table S10514.  Gene #1020: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IL1RL1 MUTATED 2 3 7 0 2
IL1RL1 WILD-TYPE 57 72 67 119 36

Figure S2878.  Get High-res Image Gene #1020: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IL1RL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S10515.  Gene #1020: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IL1RL1 MUTATED 1 5 5 2 1
IL1RL1 WILD-TYPE 50 71 56 69 94
'IL1RL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S10516.  Gene #1020: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IL1RL1 MUTATED 3 5 0 1 4 0 0 1 0
IL1RL1 WILD-TYPE 66 43 39 15 49 20 21 37 50
'IL1RL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.62

Table S10517.  Gene #1020: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IL1RL1 MUTATED 0 1 2 0 2 2
IL1RL1 WILD-TYPE 13 15 12 11 9 7
'IL1RL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S10518.  Gene #1020: 'IL1RL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IL1RL1 MUTATED 3 0 0 1 0 2 1 0 0
IL1RL1 WILD-TYPE 8 7 7 8 8 5 10 9 5
'UGT1A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S10519.  Gene #1021: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
UGT1A1 MUTATED 2 0 1 0 0
UGT1A1 WILD-TYPE 30 18 45 27 23
'UGT1A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.79

Table S10520.  Gene #1021: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
UGT1A1 MUTATED 2 1 0
UGT1A1 WILD-TYPE 41 66 36
'UGT1A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0884 (Fisher's exact test), Q value = 0.32

Table S10521.  Gene #1021: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UGT1A1 MUTATED 2 2 7
UGT1A1 WILD-TYPE 40 171 140
'UGT1A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10522.  Gene #1021: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UGT1A1 MUTATED 2 2 3
UGT1A1 WILD-TYPE 60 71 72
'UGT1A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S10523.  Gene #1021: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UGT1A1 MUTATED 1 4 3
UGT1A1 WILD-TYPE 69 116 97
'UGT1A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S10524.  Gene #1021: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UGT1A1 MUTATED 0 1 0 1 2 3 0 1 0
UGT1A1 WILD-TYPE 41 25 30 28 37 66 20 13 22
'UGT1A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S10525.  Gene #1021: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UGT1A1 MUTATED 3 2 3 3
UGT1A1 WILD-TYPE 97 70 69 118
'UGT1A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0451 (Fisher's exact test), Q value = 0.23

Table S10526.  Gene #1021: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UGT1A1 MUTATED 0 3 5 1 2
UGT1A1 WILD-TYPE 59 72 69 118 36

Figure S2879.  Get High-res Image Gene #1021: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UGT1A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 0.28

Table S10527.  Gene #1021: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UGT1A1 MUTATED 2 5 0 0 4
UGT1A1 WILD-TYPE 49 71 61 71 91
'UGT1A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S10528.  Gene #1021: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UGT1A1 MUTATED 3 1 1 2 1 0 1 2 0
UGT1A1 WILD-TYPE 66 47 38 14 52 20 20 36 50
'UGT1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S10529.  Gene #1021: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
UGT1A1 MUTATED 1 0 1 0 2 0
UGT1A1 WILD-TYPE 12 16 13 11 9 9
'UGT1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.63

Table S10530.  Gene #1021: 'UGT1A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
UGT1A1 MUTATED 0 0 0 1 0 0 2 0 1
UGT1A1 WILD-TYPE 11 7 7 8 8 7 9 9 4
'PTPRR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00833 (Fisher's exact test), Q value = 0.086

Table S10531.  Gene #1022: 'PTPRR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTPRR MUTATED 0 1 9
PTPRR WILD-TYPE 42 172 138

Figure S2880.  Get High-res Image Gene #1022: 'PTPRR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPRR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.21

Table S10532.  Gene #1022: 'PTPRR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTPRR MUTATED 5 0 4
PTPRR WILD-TYPE 57 73 71

Figure S2881.  Get High-res Image Gene #1022: 'PTPRR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PTPRR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S10533.  Gene #1022: 'PTPRR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTPRR MUTATED 1 2 6
PTPRR WILD-TYPE 69 118 94
'PTPRR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.59

Table S10534.  Gene #1022: 'PTPRR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTPRR MUTATED 0 0 0 1 1 4 2 1 0
PTPRR WILD-TYPE 41 26 30 28 38 65 18 13 22
'PTPRR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S10535.  Gene #1022: 'PTPRR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTPRR MUTATED 1 6 2 1
PTPRR WILD-TYPE 99 66 70 120

Figure S2882.  Get High-res Image Gene #1022: 'PTPRR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTPRR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0011 (Fisher's exact test), Q value = 0.026

Table S10536.  Gene #1022: 'PTPRR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTPRR MUTATED 0 2 7 0 1
PTPRR WILD-TYPE 59 73 67 119 37

Figure S2883.  Get High-res Image Gene #1022: 'PTPRR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPRR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S10537.  Gene #1022: 'PTPRR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTPRR MUTATED 2 5 1 0 2
PTPRR WILD-TYPE 49 71 60 71 93
'PTPRR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0998 (Fisher's exact test), Q value = 0.34

Table S10538.  Gene #1022: 'PTPRR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTPRR MUTATED 1 2 1 3 2 0 0 0 1
PTPRR WILD-TYPE 68 46 38 13 51 20 21 38 49
'STK11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S10539.  Gene #1023: 'STK11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STK11 MUTATED 3 17 11
STK11 WILD-TYPE 39 156 136
'STK11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.92

Table S10540.  Gene #1023: 'STK11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STK11 MUTATED 7 11 13
STK11 WILD-TYPE 55 62 62
'STK11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.8

Table S10541.  Gene #1023: 'STK11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STK11 MUTATED 3 11 9
STK11 WILD-TYPE 67 109 91
'STK11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S10542.  Gene #1023: 'STK11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STK11 MUTATED 2 1 1 2 3 7 3 1 3
STK11 WILD-TYPE 39 25 29 27 36 62 17 13 19
'STK11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0098

Table S10543.  Gene #1023: 'STK11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STK11 MUTATED 13 10 7 1
STK11 WILD-TYPE 87 62 65 120

Figure S2884.  Get High-res Image Gene #1023: 'STK11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'STK11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S10544.  Gene #1023: 'STK11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STK11 MUTATED 6 14 10 1 0
STK11 WILD-TYPE 53 61 64 118 38

Figure S2885.  Get High-res Image Gene #1023: 'STK11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STK11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S10545.  Gene #1023: 'STK11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STK11 MUTATED 12 12 4 3 0
STK11 WILD-TYPE 39 64 57 68 95

Figure S2886.  Get High-res Image Gene #1023: 'STK11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'STK11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0043 (Fisher's exact test), Q value = 0.06

Table S10546.  Gene #1023: 'STK11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STK11 MUTATED 9 7 5 1 5 4 0 0 0
STK11 WILD-TYPE 60 41 34 15 48 16 21 38 50

Figure S2887.  Get High-res Image Gene #1023: 'STK11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'STK11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S10547.  Gene #1023: 'STK11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
STK11 MUTATED 3 1 0 0 1 1
STK11 WILD-TYPE 10 15 14 11 10 8
'STK11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S10548.  Gene #1023: 'STK11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
STK11 MUTATED 0 0 1 0 0 0 1 3 1
STK11 WILD-TYPE 11 7 6 9 8 7 10 6 4
'AGFG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0544 (Fisher's exact test), Q value = 0.25

Table S10549.  Gene #1024: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AGFG2 MUTATED 3 0 0 0 0
AGFG2 WILD-TYPE 29 18 46 27 23
'AGFG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.21

Table S10550.  Gene #1024: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AGFG2 MUTATED 3 0 0
AGFG2 WILD-TYPE 40 67 36

Figure S2888.  Get High-res Image Gene #1024: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'AGFG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00075 (Fisher's exact test), Q value = 0.021

Table S10551.  Gene #1024: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AGFG2 MUTATED 0 0 9
AGFG2 WILD-TYPE 42 173 138

Figure S2889.  Get High-res Image Gene #1024: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AGFG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S10552.  Gene #1024: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AGFG2 MUTATED 2 0 4
AGFG2 WILD-TYPE 60 73 71
'AGFG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.62

Table S10553.  Gene #1024: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AGFG2 MUTATED 2 1 4
AGFG2 WILD-TYPE 68 119 96
'AGFG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S10554.  Gene #1024: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AGFG2 MUTATED 1 0 0 0 4 2 0 0 0
AGFG2 WILD-TYPE 40 26 30 29 35 67 20 14 22
'AGFG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S10555.  Gene #1024: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AGFG2 MUTATED 0 4 2 3
AGFG2 WILD-TYPE 100 68 70 118
'AGFG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0012 (Fisher's exact test), Q value = 0.028

Table S10556.  Gene #1024: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AGFG2 MUTATED 1 0 5 0 3
AGFG2 WILD-TYPE 58 75 69 119 35

Figure S2890.  Get High-res Image Gene #1024: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AGFG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S10557.  Gene #1024: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AGFG2 MUTATED 0 4 1 0 4
AGFG2 WILD-TYPE 51 72 60 71 91
'AGFG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S10558.  Gene #1024: 'AGFG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AGFG2 MUTATED 2 2 0 1 0 1 0 3 0
AGFG2 WILD-TYPE 67 46 39 15 53 19 21 35 50
'MFSD9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S10559.  Gene #1025: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MFSD9 MUTATED 2 0 0 1 0
MFSD9 WILD-TYPE 30 18 46 26 23
'MFSD9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10560.  Gene #1025: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MFSD9 MUTATED 1 1 1
MFSD9 WILD-TYPE 42 66 35
'MFSD9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00212 (Fisher's exact test), Q value = 0.039

Table S10561.  Gene #1025: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MFSD9 MUTATED 0 1 11
MFSD9 WILD-TYPE 42 172 136

Figure S2891.  Get High-res Image Gene #1025: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MFSD9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S10562.  Gene #1025: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MFSD9 MUTATED 3 1 5
MFSD9 WILD-TYPE 59 72 70
'MFSD9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S10563.  Gene #1025: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MFSD9 MUTATED 1 3 5
MFSD9 WILD-TYPE 69 117 95
'MFSD9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S10564.  Gene #1025: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MFSD9 MUTATED 0 2 0 1 1 5 0 0 0
MFSD9 WILD-TYPE 41 24 30 28 38 64 20 14 22
'MFSD9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S10565.  Gene #1025: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MFSD9 MUTATED 2 5 3 2
MFSD9 WILD-TYPE 98 67 69 119
'MFSD9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0761 (Fisher's exact test), Q value = 0.3

Table S10566.  Gene #1025: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MFSD9 MUTATED 0 3 6 2 1
MFSD9 WILD-TYPE 59 72 68 117 37
'MFSD9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S10567.  Gene #1025: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MFSD9 MUTATED 1 5 0 3 3
MFSD9 WILD-TYPE 50 71 61 68 92
'MFSD9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S10568.  Gene #1025: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MFSD9 MUTATED 2 1 0 2 4 1 0 1 1
MFSD9 WILD-TYPE 67 47 39 14 49 19 21 37 49
'MFSD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S10569.  Gene #1025: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MFSD9 MUTATED 1 0 1 0 1 0
MFSD9 WILD-TYPE 12 16 13 11 10 9
'MFSD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S10570.  Gene #1025: 'MFSD9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MFSD9 MUTATED 0 0 0 1 1 1 0 0 0
MFSD9 WILD-TYPE 11 7 7 8 7 6 11 9 5
'C7ORF66 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S10571.  Gene #1026: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C7ORF66 MUTATED 1 1 5
C7ORF66 WILD-TYPE 41 172 142
'C7ORF66 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.98

Table S10572.  Gene #1026: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C7ORF66 MUTATED 2 1 3
C7ORF66 WILD-TYPE 60 72 72
'C7ORF66 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S10573.  Gene #1026: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C7ORF66 MUTATED 1 1 3
C7ORF66 WILD-TYPE 69 119 97
'C7ORF66 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S10574.  Gene #1026: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C7ORF66 MUTATED 3 0 0 0 0 2 0 0 0
C7ORF66 WILD-TYPE 38 26 30 29 39 67 20 14 22
'C7ORF66 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S10575.  Gene #1026: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C7ORF66 MUTATED 1 1 4 1
C7ORF66 WILD-TYPE 99 71 68 120
'C7ORF66 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S10576.  Gene #1026: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C7ORF66 MUTATED 1 2 3 1 0
C7ORF66 WILD-TYPE 58 73 71 118 38
'C7ORF66 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S10577.  Gene #1026: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C7ORF66 MUTATED 1 3 1 2 0
C7ORF66 WILD-TYPE 50 73 60 69 95
'C7ORF66 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.97

Table S10578.  Gene #1026: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C7ORF66 MUTATED 2 2 1 1 1 0 0 0 0
C7ORF66 WILD-TYPE 67 46 38 15 52 20 21 38 50
'C7ORF66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S10579.  Gene #1026: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C7ORF66 MUTATED 0 1 1 0 1 0
C7ORF66 WILD-TYPE 13 15 13 11 10 9
'C7ORF66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 0.9

Table S10580.  Gene #1026: 'C7ORF66 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C7ORF66 MUTATED 1 1 0 0 0 1 0 0 0
C7ORF66 WILD-TYPE 10 6 7 9 8 6 11 9 5
'MCART1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00714 (Fisher's exact test), Q value = 0.079

Table S10581.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MCART1 MUTATED 3 1 8
MCART1 WILD-TYPE 39 172 139

Figure S2892.  Get High-res Image Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MCART1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.21

Table S10582.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MCART1 MUTATED 4 0 6
MCART1 WILD-TYPE 58 73 69

Figure S2893.  Get High-res Image Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MCART1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S10583.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MCART1 MUTATED 1 4 5
MCART1 WILD-TYPE 69 116 95
'MCART1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.92

Table S10584.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MCART1 MUTATED 0 1 1 1 3 2 1 1 0
MCART1 WILD-TYPE 41 25 29 28 36 67 19 13 22
'MCART1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S10585.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MCART1 MUTATED 1 7 2 2
MCART1 WILD-TYPE 99 65 70 119

Figure S2894.  Get High-res Image Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MCART1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S10586.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MCART1 MUTATED 2 3 4 1 2
MCART1 WILD-TYPE 57 72 70 118 36
'MCART1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S10587.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MCART1 MUTATED 1 4 2 1 4
MCART1 WILD-TYPE 50 72 59 70 91
'MCART1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0537 (Fisher's exact test), Q value = 0.25

Table S10588.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MCART1 MUTATED 3 0 0 3 1 1 1 2 1
MCART1 WILD-TYPE 66 48 39 13 52 19 20 36 49
'MCART1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S10589.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MCART1 MUTATED 1 1 0 0 1 0
MCART1 WILD-TYPE 12 15 14 11 10 9
'MCART1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S10590.  Gene #1027: 'MCART1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MCART1 MUTATED 1 0 0 1 0 0 0 1 0
MCART1 WILD-TYPE 10 7 7 8 8 7 11 8 5
'P2RX7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.82

Table S10591.  Gene #1028: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
P2RX7 MUTATED 1 4 7
P2RX7 WILD-TYPE 41 169 140
'P2RX7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 0.29

Table S10592.  Gene #1028: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
P2RX7 MUTATED 2 1 7
P2RX7 WILD-TYPE 60 72 68
'P2RX7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10593.  Gene #1028: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
P2RX7 MUTATED 2 3 3
P2RX7 WILD-TYPE 68 117 97
'P2RX7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S10594.  Gene #1028: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
P2RX7 MUTATED 0 1 1 1 0 2 0 0 3
P2RX7 WILD-TYPE 41 25 29 28 39 67 20 14 19
'P2RX7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S10595.  Gene #1028: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
P2RX7 MUTATED 4 3 4 1
P2RX7 WILD-TYPE 96 69 68 120
'P2RX7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S10596.  Gene #1028: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
P2RX7 MUTATED 1 4 5 1 1
P2RX7 WILD-TYPE 58 71 69 118 37
'P2RX7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S10597.  Gene #1028: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
P2RX7 MUTATED 3 5 2 1 1
P2RX7 WILD-TYPE 48 71 59 70 94
'P2RX7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.95

Table S10598.  Gene #1028: 'P2RX7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
P2RX7 MUTATED 3 3 1 1 3 0 0 1 0
P2RX7 WILD-TYPE 66 45 38 15 50 20 21 37 50
'SSX2IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S10599.  Gene #1029: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SSX2IP MUTATED 1 3 4
SSX2IP WILD-TYPE 41 170 143
'SSX2IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S10600.  Gene #1029: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SSX2IP MUTATED 2 0 3
SSX2IP WILD-TYPE 60 73 72
'SSX2IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.99

Table S10601.  Gene #1029: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SSX2IP MUTATED 2 2 3
SSX2IP WILD-TYPE 68 118 97
'SSX2IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S10602.  Gene #1029: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SSX2IP MUTATED 1 0 2 1 1 1 1 0 0
SSX2IP WILD-TYPE 40 26 28 28 38 68 19 14 22
'SSX2IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S10603.  Gene #1029: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SSX2IP MUTATED 1 2 2 2
SSX2IP WILD-TYPE 99 70 70 119
'SSX2IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S10604.  Gene #1029: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SSX2IP MUTATED 2 0 3 1 1
SSX2IP WILD-TYPE 57 75 71 118 37
'SSX2IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.75

Table S10605.  Gene #1029: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SSX2IP MUTATED 1 1 2 0 4
SSX2IP WILD-TYPE 50 75 59 71 91
'SSX2IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S10606.  Gene #1029: 'SSX2IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SSX2IP MUTATED 1 3 0 0 0 1 0 2 1
SSX2IP WILD-TYPE 68 45 39 16 53 19 21 36 49
'MRPS5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.13

Table S10607.  Gene #1030: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MRPS5 MUTATED 2 1 8
MRPS5 WILD-TYPE 40 172 139

Figure S2895.  Get High-res Image Gene #1030: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MRPS5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S10608.  Gene #1030: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MRPS5 MUTATED 2 4 3
MRPS5 WILD-TYPE 60 69 72
'MRPS5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S10609.  Gene #1030: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MRPS5 MUTATED 1 4 5
MRPS5 WILD-TYPE 69 116 95
'MRPS5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.56

Table S10610.  Gene #1030: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MRPS5 MUTATED 1 1 0 1 0 3 3 0 1
MRPS5 WILD-TYPE 40 25 30 28 39 66 17 14 21
'MRPS5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S10611.  Gene #1030: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MRPS5 MUTATED 3 5 1 2
MRPS5 WILD-TYPE 97 67 71 119
'MRPS5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S10612.  Gene #1030: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MRPS5 MUTATED 1 3 5 1 1
MRPS5 WILD-TYPE 58 72 69 118 37
'MRPS5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.22

Table S10613.  Gene #1030: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MRPS5 MUTATED 3 5 1 0 1
MRPS5 WILD-TYPE 48 71 60 71 94

Figure S2896.  Get High-res Image Gene #1030: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MRPS5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.57

Table S10614.  Gene #1030: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MRPS5 MUTATED 5 1 0 0 2 1 1 0 0
MRPS5 WILD-TYPE 64 47 39 16 51 19 20 38 50
'DUSP19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.99

Table S10615.  Gene #1031: 'DUSP19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DUSP19 MUTATED 0 4 5
DUSP19 WILD-TYPE 42 169 142
'DUSP19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S10616.  Gene #1031: 'DUSP19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DUSP19 MUTATED 3 2 3
DUSP19 WILD-TYPE 59 71 72
'DUSP19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.99

Table S10617.  Gene #1031: 'DUSP19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DUSP19 MUTATED 1 4 4
DUSP19 WILD-TYPE 69 116 96
'DUSP19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S10618.  Gene #1031: 'DUSP19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DUSP19 MUTATED 1 0 0 1 0 5 0 0 2
DUSP19 WILD-TYPE 40 26 30 28 39 64 20 14 20
'DUSP19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S10619.  Gene #1031: 'DUSP19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DUSP19 MUTATED 1 2 4 2
DUSP19 WILD-TYPE 99 70 68 119
'DUSP19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S10620.  Gene #1031: 'DUSP19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DUSP19 MUTATED 2 3 2 1 1
DUSP19 WILD-TYPE 57 72 72 118 37
'DUSP19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 0.25

Table S10621.  Gene #1031: 'DUSP19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DUSP19 MUTATED 4 2 1 0 1
DUSP19 WILD-TYPE 47 74 60 71 94
'DUSP19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S10622.  Gene #1031: 'DUSP19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DUSP19 MUTATED 3 2 0 0 2 0 0 0 1
DUSP19 WILD-TYPE 66 46 39 16 51 20 21 38 49
'STK35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.1

Table S10623.  Gene #1032: 'STK35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STK35 MUTATED 0 0 6
STK35 WILD-TYPE 42 173 141

Figure S2897.  Get High-res Image Gene #1032: 'STK35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STK35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S10624.  Gene #1032: 'STK35 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STK35 MUTATED 2 0 3
STK35 WILD-TYPE 60 73 72
'STK35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 0.32

Table S10625.  Gene #1032: 'STK35 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STK35 MUTATED 2 0 3
STK35 WILD-TYPE 68 120 97
'STK35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S10626.  Gene #1032: 'STK35 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STK35 MUTATED 1 0 0 0 0 2 1 1 0
STK35 WILD-TYPE 40 26 30 29 39 67 19 13 22
'STK35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0928 (Fisher's exact test), Q value = 0.33

Table S10627.  Gene #1032: 'STK35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STK35 MUTATED 0 2 3 1
STK35 WILD-TYPE 100 70 69 120
'STK35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S10628.  Gene #1032: 'STK35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STK35 MUTATED 1 1 3 0 1
STK35 WILD-TYPE 58 74 71 119 37
'STK35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S10629.  Gene #1032: 'STK35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STK35 MUTATED 0 4 1 0 1
STK35 WILD-TYPE 51 72 60 71 94
'STK35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S10630.  Gene #1032: 'STK35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STK35 MUTATED 1 1 1 2 0 0 0 1 0
STK35 WILD-TYPE 68 47 38 14 53 20 21 37 50
'CCDC110 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S10631.  Gene #1033: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CCDC110 MUTATED 2 0 0 2 0
CCDC110 WILD-TYPE 30 18 46 25 23
'CCDC110 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10632.  Gene #1033: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CCDC110 MUTATED 1 2 1
CCDC110 WILD-TYPE 42 65 35
'CCDC110 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00303 (Fisher's exact test), Q value = 0.048

Table S10633.  Gene #1033: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCDC110 MUTATED 1 1 11
CCDC110 WILD-TYPE 41 172 136

Figure S2898.  Get High-res Image Gene #1033: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC110 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S10634.  Gene #1033: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCDC110 MUTATED 3 1 5
CCDC110 WILD-TYPE 59 72 70
'CCDC110 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.76

Table S10635.  Gene #1033: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCDC110 MUTATED 1 6 3
CCDC110 WILD-TYPE 69 114 97
'CCDC110 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S10636.  Gene #1033: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCDC110 MUTATED 2 1 1 4 0 1 1 0 0
CCDC110 WILD-TYPE 39 25 29 25 39 68 19 14 22
'CCDC110 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.19

Table S10637.  Gene #1033: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCDC110 MUTATED 0 5 4 4
CCDC110 WILD-TYPE 100 67 68 117

Figure S2899.  Get High-res Image Gene #1033: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CCDC110 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0992 (Fisher's exact test), Q value = 0.34

Table S10638.  Gene #1033: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCDC110 MUTATED 2 0 6 4 1
CCDC110 WILD-TYPE 57 75 68 115 37
'CCDC110 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S10639.  Gene #1033: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCDC110 MUTATED 0 6 2 1 4
CCDC110 WILD-TYPE 51 70 59 70 91
'CCDC110 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0536 (Fisher's exact test), Q value = 0.25

Table S10640.  Gene #1033: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCDC110 MUTATED 1 4 0 3 2 1 0 1 1
CCDC110 WILD-TYPE 68 44 39 13 51 19 21 37 49
'CCDC110 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00648 (Fisher's exact test), Q value = 0.075

Table S10641.  Gene #1033: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CCDC110 MUTATED 0 0 0 0 3 0
CCDC110 WILD-TYPE 13 16 14 11 8 9

Figure S2900.  Get High-res Image Gene #1033: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CCDC110 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S10642.  Gene #1033: 'CCDC110 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CCDC110 MUTATED 0 0 0 1 1 0 1 0 0
CCDC110 WILD-TYPE 11 7 7 8 7 7 10 9 5
'RC3H2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S10643.  Gene #1034: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RC3H2 MUTATED 0 3 6
RC3H2 WILD-TYPE 42 170 141
'RC3H2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S10644.  Gene #1034: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RC3H2 MUTATED 4 1 3
RC3H2 WILD-TYPE 58 72 72
'RC3H2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S10645.  Gene #1034: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RC3H2 MUTATED 1 3 5
RC3H2 WILD-TYPE 69 117 95
'RC3H2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S10646.  Gene #1034: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RC3H2 MUTATED 2 1 0 0 1 4 0 1 0
RC3H2 WILD-TYPE 39 25 30 29 38 65 20 13 22
'RC3H2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S10647.  Gene #1034: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RC3H2 MUTATED 1 3 4 1
RC3H2 WILD-TYPE 99 69 68 120
'RC3H2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 0.21

Table S10648.  Gene #1034: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RC3H2 MUTATED 3 1 4 0 1
RC3H2 WILD-TYPE 56 74 70 119 37

Figure S2901.  Get High-res Image Gene #1034: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RC3H2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S10649.  Gene #1034: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RC3H2 MUTATED 2 4 1 1 1
RC3H2 WILD-TYPE 49 72 60 70 94
'RC3H2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S10650.  Gene #1034: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RC3H2 MUTATED 3 3 1 1 0 0 0 1 0
RC3H2 WILD-TYPE 66 45 38 15 53 20 21 37 50
'RC3H2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S10651.  Gene #1034: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RC3H2 MUTATED 0 0 1 2 0 0
RC3H2 WILD-TYPE 13 16 13 9 11 9
'RC3H2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 0.9

Table S10652.  Gene #1034: 'RC3H2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RC3H2 MUTATED 0 0 1 0 0 1 1 0 0
RC3H2 WILD-TYPE 11 7 6 9 8 6 10 9 5
'LEO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S10653.  Gene #1035: 'LEO1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LEO1 MUTATED 1 2 7
LEO1 WILD-TYPE 41 171 140
'LEO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S10654.  Gene #1035: 'LEO1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LEO1 MUTATED 4 1 3
LEO1 WILD-TYPE 58 72 72
'LEO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.99

Table S10655.  Gene #1035: 'LEO1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LEO1 MUTATED 1 4 4
LEO1 WILD-TYPE 69 116 96
'LEO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S10656.  Gene #1035: 'LEO1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LEO1 MUTATED 1 2 0 1 1 3 0 0 1
LEO1 WILD-TYPE 40 24 30 28 38 66 20 14 21
'LEO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 0.3

Table S10657.  Gene #1035: 'LEO1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LEO1 MUTATED 0 3 4 3
LEO1 WILD-TYPE 100 69 68 118
'LEO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.61

Table S10658.  Gene #1035: 'LEO1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LEO1 MUTATED 3 2 2 1 2
LEO1 WILD-TYPE 56 73 72 118 36
'LEO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S10659.  Gene #1035: 'LEO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LEO1 MUTATED 0 2 4 0 3
LEO1 WILD-TYPE 51 74 57 71 92
'LEO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 0.93

Table S10660.  Gene #1035: 'LEO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LEO1 MUTATED 1 3 0 1 1 0 0 1 2
LEO1 WILD-TYPE 68 45 39 15 52 20 21 37 48
'LEO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S10661.  Gene #1035: 'LEO1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LEO1 MUTATED 0 1 0 0 1 1
LEO1 WILD-TYPE 13 15 14 11 10 8
'LEO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S10662.  Gene #1035: 'LEO1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LEO1 MUTATED 1 1 0 1 0 0 0 0 0
LEO1 WILD-TYPE 10 6 7 8 8 7 11 9 5
'ANKRD23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0642 (Fisher's exact test), Q value = 0.27

Table S10663.  Gene #1036: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ANKRD23 MUTATED 0 0 4
ANKRD23 WILD-TYPE 42 173 143
'ANKRD23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S10664.  Gene #1036: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ANKRD23 MUTATED 2 0 2
ANKRD23 WILD-TYPE 60 73 73
'ANKRD23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S10665.  Gene #1036: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ANKRD23 MUTATED 1 0 3
ANKRD23 WILD-TYPE 69 120 97
'ANKRD23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S10666.  Gene #1036: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ANKRD23 MUTATED 0 0 0 0 1 3 0 0 0
ANKRD23 WILD-TYPE 41 26 30 29 38 66 20 14 22
'ANKRD23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.14

Table S10667.  Gene #1036: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ANKRD23 MUTATED 0 3 1 0
ANKRD23 WILD-TYPE 100 69 71 121

Figure S2902.  Get High-res Image Gene #1036: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ANKRD23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00621 (Fisher's exact test), Q value = 0.074

Table S10668.  Gene #1036: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ANKRD23 MUTATED 0 0 4 0 0
ANKRD23 WILD-TYPE 59 75 70 119 38

Figure S2903.  Get High-res Image Gene #1036: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S10669.  Gene #1036: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ANKRD23 MUTATED 0 3 0 0 1
ANKRD23 WILD-TYPE 51 73 61 71 94
'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0281 (Fisher's exact test), Q value = 0.18

Table S10670.  Gene #1036: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ANKRD23 MUTATED 1 0 0 2 0 0 0 1 0
ANKRD23 WILD-TYPE 68 48 39 14 53 20 21 37 50

Figure S2904.  Get High-res Image Gene #1036: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FBXL19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S10671.  Gene #1037: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FBXL19 MUTATED 0 3 4
FBXL19 WILD-TYPE 42 170 143
'FBXL19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10672.  Gene #1037: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FBXL19 MUTATED 2 2 2
FBXL19 WILD-TYPE 60 71 73
'FBXL19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 0.34

Table S10673.  Gene #1037: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FBXL19 MUTATED 1 5 0
FBXL19 WILD-TYPE 69 115 100
'FBXL19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.18

Table S10674.  Gene #1037: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FBXL19 MUTATED 0 2 0 1 0 0 1 1 1
FBXL19 WILD-TYPE 41 24 30 28 39 69 19 13 21

Figure S2905.  Get High-res Image Gene #1037: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'FBXL19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.78

Table S10675.  Gene #1037: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FBXL19 MUTATED 2 3 1 1
FBXL19 WILD-TYPE 98 69 71 120
'FBXL19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 0.91

Table S10676.  Gene #1037: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FBXL19 MUTATED 1 3 1 1 1
FBXL19 WILD-TYPE 58 72 73 118 37
'FBXL19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.91

Table S10677.  Gene #1037: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FBXL19 MUTATED 2 2 1 0 2
FBXL19 WILD-TYPE 49 74 60 71 93
'FBXL19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0644 (Fisher's exact test), Q value = 0.27

Table S10678.  Gene #1037: 'FBXL19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FBXL19 MUTATED 1 1 0 1 0 2 1 1 0
FBXL19 WILD-TYPE 68 47 39 15 53 18 20 37 50
'BFSP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.78

Table S10679.  Gene #1038: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BFSP1 MUTATED 2 3 3
BFSP1 WILD-TYPE 40 170 144
'BFSP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S10680.  Gene #1038: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BFSP1 MUTATED 3 0 4
BFSP1 WILD-TYPE 59 73 71
'BFSP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S10681.  Gene #1038: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BFSP1 MUTATED 3 2 1
BFSP1 WILD-TYPE 67 118 99
'BFSP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S10682.  Gene #1038: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BFSP1 MUTATED 1 1 0 1 0 1 1 1 0
BFSP1 WILD-TYPE 40 25 30 28 39 68 19 13 22
'BFSP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S10683.  Gene #1038: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BFSP1 MUTATED 2 2 3 1
BFSP1 WILD-TYPE 98 70 69 120
'BFSP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S10684.  Gene #1038: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BFSP1 MUTATED 2 1 4 1 0
BFSP1 WILD-TYPE 57 74 70 118 38
'BFSP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S10685.  Gene #1038: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BFSP1 MUTATED 1 3 3 1 0
BFSP1 WILD-TYPE 50 73 58 70 95
'BFSP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S10686.  Gene #1038: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BFSP1 MUTATED 3 2 0 1 2 0 0 0 0
BFSP1 WILD-TYPE 66 46 39 15 51 20 21 38 50
'BFSP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.98

Table S10687.  Gene #1038: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BFSP1 MUTATED 0 1 2 0 1 1
BFSP1 WILD-TYPE 13 15 12 11 10 8
'BFSP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0213 (Fisher's exact test), Q value = 0.15

Table S10688.  Gene #1038: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BFSP1 MUTATED 0 1 0 0 3 1 0 0 0
BFSP1 WILD-TYPE 11 6 7 9 5 6 11 9 5

Figure S2906.  Get High-res Image Gene #1038: 'BFSP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C18ORF19 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0539 (Fisher's exact test), Q value = 0.25

Table S10689.  Gene #1039: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C18ORF19 MUTATED 3 0 0 0 0
C18ORF19 WILD-TYPE 29 18 46 27 23
'C18ORF19 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0379 (Fisher's exact test), Q value = 0.21

Table S10690.  Gene #1039: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C18ORF19 MUTATED 3 0 0
C18ORF19 WILD-TYPE 40 67 36

Figure S2907.  Get High-res Image Gene #1039: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'C18ORF19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S10691.  Gene #1039: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C18ORF19 MUTATED 0 3 5
C18ORF19 WILD-TYPE 42 170 142
'C18ORF19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.78

Table S10692.  Gene #1039: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C18ORF19 MUTATED 3 1 1
C18ORF19 WILD-TYPE 59 72 74
'C18ORF19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S10693.  Gene #1039: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C18ORF19 MUTATED 1 3 3
C18ORF19 WILD-TYPE 69 117 97
'C18ORF19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.97

Table S10694.  Gene #1039: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C18ORF19 MUTATED 1 2 1 0 1 1 1 0 0
C18ORF19 WILD-TYPE 40 24 29 29 38 68 19 14 22
'C18ORF19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S10695.  Gene #1039: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C18ORF19 MUTATED 0 2 3 3
C18ORF19 WILD-TYPE 100 70 69 118
'C18ORF19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 0.16

Table S10696.  Gene #1039: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C18ORF19 MUTATED 2 1 2 0 3
C18ORF19 WILD-TYPE 57 74 72 119 35

Figure S2908.  Get High-res Image Gene #1039: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C18ORF19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S10697.  Gene #1039: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C18ORF19 MUTATED 1 2 2 1 2
C18ORF19 WILD-TYPE 50 74 59 70 93
'C18ORF19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.099

Table S10698.  Gene #1039: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C18ORF19 MUTATED 0 3 0 1 0 1 0 3 0
C18ORF19 WILD-TYPE 69 45 39 15 53 19 21 35 50

Figure S2909.  Get High-res Image Gene #1039: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RNF20 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S10699.  Gene #1040: 'RNF20 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RNF20 MUTATED 2 0 0 2 1
RNF20 WILD-TYPE 30 18 46 25 22
'RNF20 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S10700.  Gene #1040: 'RNF20 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RNF20 MUTATED 2 2 1
RNF20 WILD-TYPE 41 65 35
'RNF20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00253 (Fisher's exact test), Q value = 0.043

Table S10701.  Gene #1040: 'RNF20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RNF20 MUTATED 3 2 13
RNF20 WILD-TYPE 39 171 134

Figure S2910.  Get High-res Image Gene #1040: 'RNF20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNF20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00589 (Fisher's exact test), Q value = 0.073

Table S10702.  Gene #1040: 'RNF20 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RNF20 MUTATED 7 0 6
RNF20 WILD-TYPE 55 73 69

Figure S2911.  Get High-res Image Gene #1040: 'RNF20 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RNF20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.19

Table S10703.  Gene #1040: 'RNF20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RNF20 MUTATED 0 5 8
RNF20 WILD-TYPE 70 115 92

Figure S2912.  Get High-res Image Gene #1040: 'RNF20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RNF20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S10704.  Gene #1040: 'RNF20 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RNF20 MUTATED 1 2 1 1 1 5 2 0 0
RNF20 WILD-TYPE 40 24 29 28 38 64 18 14 22
'RNF20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.14

Table S10705.  Gene #1040: 'RNF20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RNF20 MUTATED 3 5 8 2
RNF20 WILD-TYPE 97 67 64 119

Figure S2913.  Get High-res Image Gene #1040: 'RNF20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RNF20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0982 (Fisher's exact test), Q value = 0.34

Table S10706.  Gene #1040: 'RNF20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RNF20 MUTATED 1 4 8 3 2
RNF20 WILD-TYPE 58 71 66 116 36
'RNF20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0852 (Fisher's exact test), Q value = 0.32

Table S10707.  Gene #1040: 'RNF20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RNF20 MUTATED 0 8 3 2 4
RNF20 WILD-TYPE 51 68 58 69 91
'RNF20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S10708.  Gene #1040: 'RNF20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RNF20 MUTATED 3 4 0 1 5 0 0 3 1
RNF20 WILD-TYPE 66 44 39 15 48 20 21 35 49
'RNF20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.47

Table S10709.  Gene #1040: 'RNF20 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RNF20 MUTATED 0 1 3 0 2 0
RNF20 WILD-TYPE 13 15 11 11 9 9
'RNF20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.983 (Fisher's exact test), Q value = 1

Table S10710.  Gene #1040: 'RNF20 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RNF20 MUTATED 1 1 0 1 1 1 1 0 0
RNF20 WILD-TYPE 10 6 7 8 7 6 10 9 5
'TRIM24 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S10711.  Gene #1041: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TRIM24 MUTATED 3 0 1 1 0
TRIM24 WILD-TYPE 29 18 45 26 23
'TRIM24 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S10712.  Gene #1041: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TRIM24 MUTATED 3 1 1
TRIM24 WILD-TYPE 40 66 35
'TRIM24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S10713.  Gene #1041: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRIM24 MUTATED 4 5 8
TRIM24 WILD-TYPE 38 168 139
'TRIM24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S10714.  Gene #1041: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRIM24 MUTATED 4 2 6
TRIM24 WILD-TYPE 58 71 69
'TRIM24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S10715.  Gene #1041: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRIM24 MUTATED 3 7 5
TRIM24 WILD-TYPE 67 113 95
'TRIM24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S10716.  Gene #1041: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRIM24 MUTATED 2 0 2 1 1 4 3 0 2
TRIM24 WILD-TYPE 39 26 28 28 38 65 17 14 20
'TRIM24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.92

Table S10717.  Gene #1041: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRIM24 MUTATED 4 5 4 4
TRIM24 WILD-TYPE 96 67 68 117
'TRIM24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.47

Table S10718.  Gene #1041: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRIM24 MUTATED 3 3 6 2 3
TRIM24 WILD-TYPE 56 72 68 117 35
'TRIM24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0398 (Fisher's exact test), Q value = 0.21

Table S10719.  Gene #1041: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRIM24 MUTATED 2 6 4 3 0
TRIM24 WILD-TYPE 49 70 57 68 95

Figure S2914.  Get High-res Image Gene #1041: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TRIM24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S10720.  Gene #1041: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRIM24 MUTATED 5 4 0 1 3 1 1 0 0
TRIM24 WILD-TYPE 64 44 39 15 50 19 20 38 50
'TRIM24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S10721.  Gene #1041: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TRIM24 MUTATED 3 3 1 0 1 1
TRIM24 WILD-TYPE 10 13 13 11 10 8
'TRIM24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 0.85

Table S10722.  Gene #1041: 'TRIM24 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TRIM24 MUTATED 3 0 1 1 0 0 3 1 0
TRIM24 WILD-TYPE 8 7 6 8 8 7 8 8 5
'ODAM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.97

Table S10723.  Gene #1042: 'ODAM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ODAM MUTATED 1 2 2
ODAM WILD-TYPE 41 171 145
'ODAM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10724.  Gene #1042: 'ODAM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ODAM MUTATED 1 1 2
ODAM WILD-TYPE 61 72 73
'ODAM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10725.  Gene #1042: 'ODAM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ODAM MUTATED 1 1 1
ODAM WILD-TYPE 69 119 99
'ODAM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S10726.  Gene #1042: 'ODAM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ODAM MUTATED 0 0 0 1 1 1 0 0 0
ODAM WILD-TYPE 41 26 30 28 38 68 20 14 22
'ODAM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.76

Table S10727.  Gene #1042: 'ODAM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ODAM MUTATED 3 0 1 1
ODAM WILD-TYPE 97 72 71 120
'ODAM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0655 (Fisher's exact test), Q value = 0.28

Table S10728.  Gene #1042: 'ODAM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ODAM MUTATED 1 3 0 0 1
ODAM WILD-TYPE 58 72 74 119 37
'ODAM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S10729.  Gene #1042: 'ODAM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ODAM MUTATED 0 1 1 2 1
ODAM WILD-TYPE 51 75 60 69 94
'ODAM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S10730.  Gene #1042: 'ODAM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ODAM MUTATED 2 0 0 0 2 0 0 1 0
ODAM WILD-TYPE 67 48 39 16 51 20 21 37 50
'CDKL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0976 (Fisher's exact test), Q value = 0.34

Table S10731.  Gene #1043: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CDKL2 MUTATED 3 0 0 1 0
CDKL2 WILD-TYPE 29 18 46 26 23
'CDKL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S10732.  Gene #1043: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CDKL2 MUTATED 2 1 1
CDKL2 WILD-TYPE 41 66 35
'CDKL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.17

Table S10733.  Gene #1043: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CDKL2 MUTATED 0 2 9
CDKL2 WILD-TYPE 42 171 138

Figure S2915.  Get High-res Image Gene #1043: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDKL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10734.  Gene #1043: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CDKL2 MUTATED 2 2 3
CDKL2 WILD-TYPE 60 71 72
'CDKL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S10735.  Gene #1043: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CDKL2 MUTATED 2 4 1
CDKL2 WILD-TYPE 68 116 99
'CDKL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0566 (Fisher's exact test), Q value = 0.25

Table S10736.  Gene #1043: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CDKL2 MUTATED 3 1 2 0 0 0 0 1 0
CDKL2 WILD-TYPE 38 25 28 29 39 69 20 13 22
'CDKL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.74

Table S10737.  Gene #1043: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CDKL2 MUTATED 1 4 2 4
CDKL2 WILD-TYPE 99 68 70 117
'CDKL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.98

Table S10738.  Gene #1043: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CDKL2 MUTATED 2 3 2 2 2
CDKL2 WILD-TYPE 57 72 72 117 36
'CDKL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S10739.  Gene #1043: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CDKL2 MUTATED 3 2 2 1 3
CDKL2 WILD-TYPE 48 74 59 70 92
'CDKL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00114 (Fisher's exact test), Q value = 0.027

Table S10740.  Gene #1043: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CDKL2 MUTATED 0 2 1 2 1 4 0 1 0
CDKL2 WILD-TYPE 69 46 38 14 52 16 21 37 50

Figure S2916.  Get High-res Image Gene #1043: 'CDKL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LRP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0069

Table S10741.  Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LRP2 MUTATED 14 2 2 3 2
LRP2 WILD-TYPE 18 16 44 24 21

Figure S2917.  Get High-res Image Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LRP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00027 (Fisher's exact test), Q value = 0.011

Table S10742.  Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LRP2 MUTATED 15 4 4
LRP2 WILD-TYPE 28 63 32

Figure S2918.  Get High-res Image Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LRP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.012

Table S10743.  Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LRP2 MUTATED 6 24 47
LRP2 WILD-TYPE 36 149 100

Figure S2919.  Get High-res Image Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LRP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.31

Table S10744.  Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LRP2 MUTATED 17 11 22
LRP2 WILD-TYPE 45 62 53
'LRP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 0.16

Table S10745.  Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LRP2 MUTATED 9 23 30
LRP2 WILD-TYPE 61 97 70

Figure S2920.  Get High-res Image Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LRP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.93

Table S10746.  Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LRP2 MUTATED 9 5 4 8 8 20 2 3 3
LRP2 WILD-TYPE 32 21 26 21 31 49 18 11 19
'LRP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.94

Table S10747.  Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LRP2 MUTATED 18 17 18 24
LRP2 WILD-TYPE 82 55 54 97
'LRP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00036 (Fisher's exact test), Q value = 0.013

Table S10748.  Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LRP2 MUTATED 12 15 23 12 15
LRP2 WILD-TYPE 47 60 51 107 23

Figure S2921.  Get High-res Image Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LRP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0562 (Fisher's exact test), Q value = 0.25

Table S10749.  Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LRP2 MUTATED 11 23 15 8 17
LRP2 WILD-TYPE 40 53 46 63 78
'LRP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 0.18

Table S10750.  Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LRP2 MUTATED 11 13 5 7 11 6 8 8 5
LRP2 WILD-TYPE 58 35 34 9 42 14 13 30 45

Figure S2922.  Get High-res Image Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S10751.  Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LRP2 MUTATED 1 4 4 2 5 2
LRP2 WILD-TYPE 12 12 10 9 6 7
'LRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.987 (Fisher's exact test), Q value = 1

Table S10752.  Gene #1044: 'LRP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LRP2 MUTATED 2 2 2 2 1 2 4 2 1
LRP2 WILD-TYPE 9 5 5 7 7 5 7 7 4
'KCNG4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.96

Table S10753.  Gene #1045: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KCNG4 MUTATED 0 6 4
KCNG4 WILD-TYPE 42 167 143
'KCNG4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.53

Table S10754.  Gene #1045: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KCNG4 MUTATED 2 1 5
KCNG4 WILD-TYPE 60 72 70
'KCNG4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S10755.  Gene #1045: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KCNG4 MUTATED 1 6 1
KCNG4 WILD-TYPE 69 114 99
'KCNG4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S10756.  Gene #1045: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KCNG4 MUTATED 0 1 2 3 0 1 1 0 0
KCNG4 WILD-TYPE 41 25 28 26 39 68 19 14 22
'KCNG4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S10757.  Gene #1045: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KCNG4 MUTATED 4 2 2 2
KCNG4 WILD-TYPE 96 70 70 119
'KCNG4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.78

Table S10758.  Gene #1045: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KCNG4 MUTATED 1 4 3 2 0
KCNG4 WILD-TYPE 58 71 71 117 38
'KCNG4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S10759.  Gene #1045: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KCNG4 MUTATED 1 4 1 3 1
KCNG4 WILD-TYPE 50 72 60 68 94
'KCNG4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 0.89

Table S10760.  Gene #1045: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KCNG4 MUTATED 4 1 0 1 2 1 0 0 1
KCNG4 WILD-TYPE 65 47 39 15 51 19 21 38 49
'KCNG4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S10761.  Gene #1045: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KCNG4 MUTATED 1 1 0 1 1 2
KCNG4 WILD-TYPE 12 15 14 10 10 7
'KCNG4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S10762.  Gene #1045: 'KCNG4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KCNG4 MUTATED 1 0 0 1 0 1 1 1 1
KCNG4 WILD-TYPE 10 7 7 8 8 6 10 8 4
'PAK7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.094

Table S10763.  Gene #1046: 'PAK7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PAK7 MUTATED 1 0 0 4 0
PAK7 WILD-TYPE 31 18 46 23 23

Figure S2923.  Get High-res Image Gene #1046: 'PAK7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PAK7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.91

Table S10764.  Gene #1046: 'PAK7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PAK7 MUTATED 2 3 0
PAK7 WILD-TYPE 41 64 36
'PAK7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.093 (Fisher's exact test), Q value = 0.33

Table S10765.  Gene #1046: 'PAK7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PAK7 MUTATED 2 5 12
PAK7 WILD-TYPE 40 168 135
'PAK7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S10766.  Gene #1046: 'PAK7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PAK7 MUTATED 6 3 6
PAK7 WILD-TYPE 56 70 69
'PAK7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S10767.  Gene #1046: 'PAK7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PAK7 MUTATED 2 5 10
PAK7 WILD-TYPE 68 115 90
'PAK7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S10768.  Gene #1046: 'PAK7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PAK7 MUTATED 2 2 2 0 1 7 2 1 0
PAK7 WILD-TYPE 39 24 28 29 38 62 18 13 22
'PAK7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S10769.  Gene #1046: 'PAK7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PAK7 MUTATED 6 6 4 4
PAK7 WILD-TYPE 94 66 68 117
'PAK7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S10770.  Gene #1046: 'PAK7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PAK7 MUTATED 2 6 7 3 2
PAK7 WILD-TYPE 57 69 67 116 36
'PAK7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0986 (Fisher's exact test), Q value = 0.34

Table S10771.  Gene #1046: 'PAK7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PAK7 MUTATED 3 6 5 0 5
PAK7 WILD-TYPE 48 70 56 71 90
'PAK7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S10772.  Gene #1046: 'PAK7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PAK7 MUTATED 3 3 0 3 5 2 0 1 2
PAK7 WILD-TYPE 66 45 39 13 48 18 21 37 48
'PAK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S10773.  Gene #1046: 'PAK7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PAK7 MUTATED 1 1 1 0 2 1
PAK7 WILD-TYPE 12 15 13 11 9 8
'PAK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S10774.  Gene #1046: 'PAK7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PAK7 MUTATED 0 0 1 1 2 2 0 0 0
PAK7 WILD-TYPE 11 7 6 8 6 5 11 9 5
'CHD7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.1

Table S10775.  Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CHD7 MUTATED 7 1 1 3 0
CHD7 WILD-TYPE 25 17 45 24 23

Figure S2924.  Get High-res Image Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CHD7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S10776.  Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CHD7 MUTATED 6 5 1
CHD7 WILD-TYPE 37 62 35
'CHD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-04 (Fisher's exact test), Q value = 0.02

Table S10777.  Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CHD7 MUTATED 4 7 24
CHD7 WILD-TYPE 38 166 123

Figure S2925.  Get High-res Image Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CHD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0612 (Fisher's exact test), Q value = 0.27

Table S10778.  Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CHD7 MUTATED 11 4 11
CHD7 WILD-TYPE 51 69 64
'CHD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S10779.  Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CHD7 MUTATED 5 12 15
CHD7 WILD-TYPE 65 108 85
'CHD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.89

Table S10780.  Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CHD7 MUTATED 1 3 2 3 5 11 2 2 3
CHD7 WILD-TYPE 40 23 28 26 34 58 18 12 19
'CHD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0915 (Fisher's exact test), Q value = 0.33

Table S10781.  Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CHD7 MUTATED 5 12 8 12
CHD7 WILD-TYPE 95 60 64 109
'CHD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00993 (Fisher's exact test), Q value = 0.094

Table S10782.  Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CHD7 MUTATED 3 6 15 7 6
CHD7 WILD-TYPE 56 69 59 112 32

Figure S2926.  Get High-res Image Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.19

Table S10783.  Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CHD7 MUTATED 3 13 5 2 12
CHD7 WILD-TYPE 48 63 56 69 83

Figure S2927.  Get High-res Image Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CHD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00048 (Fisher's exact test), Q value = 0.016

Table S10784.  Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CHD7 MUTATED 4 5 3 8 2 3 2 6 2
CHD7 WILD-TYPE 65 43 36 8 51 17 19 32 48

Figure S2928.  Get High-res Image Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CHD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.19

Table S10785.  Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CHD7 MUTATED 0 0 2 0 3 2
CHD7 WILD-TYPE 13 16 12 11 8 7

Figure S2929.  Get High-res Image Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CHD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S10786.  Gene #1047: 'CHD7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CHD7 MUTATED 1 0 0 3 0 1 1 1 0
CHD7 WILD-TYPE 10 7 7 6 8 6 10 8 5
'ZNF585B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S10787.  Gene #1048: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF585B MUTATED 0 2 5
ZNF585B WILD-TYPE 42 171 142
'ZNF585B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.93

Table S10788.  Gene #1048: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF585B MUTATED 1 1 3
ZNF585B WILD-TYPE 61 72 72
'ZNF585B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0965 (Fisher's exact test), Q value = 0.34

Table S10789.  Gene #1048: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF585B MUTATED 1 5 0
ZNF585B WILD-TYPE 69 115 100
'ZNF585B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S10790.  Gene #1048: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF585B MUTATED 0 1 1 0 1 0 1 1 1
ZNF585B WILD-TYPE 41 25 29 29 38 69 19 13 21
'ZNF585B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S10791.  Gene #1048: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF585B MUTATED 1 1 3 2
ZNF585B WILD-TYPE 99 71 69 119
'ZNF585B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.94

Table S10792.  Gene #1048: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF585B MUTATED 2 1 2 1 1
ZNF585B WILD-TYPE 57 74 72 118 37
'ZNF585B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S10793.  Gene #1048: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF585B MUTATED 2 1 2 0 2
ZNF585B WILD-TYPE 49 75 59 71 93
'ZNF585B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S10794.  Gene #1048: 'ZNF585B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF585B MUTATED 2 1 1 1 0 1 0 1 0
ZNF585B WILD-TYPE 67 47 38 15 53 19 21 37 50
'NSUN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S10795.  Gene #1049: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NSUN2 MUTATED 2 0 0 0 1
NSUN2 WILD-TYPE 30 18 46 27 22
'NSUN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S10796.  Gene #1049: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NSUN2 MUTATED 2 0 1
NSUN2 WILD-TYPE 41 67 35
'NSUN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S10797.  Gene #1049: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NSUN2 MUTATED 0 4 7
NSUN2 WILD-TYPE 42 169 140
'NSUN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.098

Table S10798.  Gene #1049: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NSUN2 MUTATED 6 0 2
NSUN2 WILD-TYPE 56 73 73

Figure S2930.  Get High-res Image Gene #1049: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NSUN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S10799.  Gene #1049: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NSUN2 MUTATED 1 1 7
NSUN2 WILD-TYPE 69 119 93

Figure S2931.  Get High-res Image Gene #1049: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NSUN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S10800.  Gene #1049: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NSUN2 MUTATED 1 0 0 1 0 6 1 0 0
NSUN2 WILD-TYPE 40 26 30 28 39 63 19 14 22
'NSUN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.73

Table S10801.  Gene #1049: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NSUN2 MUTATED 2 4 3 2
NSUN2 WILD-TYPE 98 68 69 119
'NSUN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.45

Table S10802.  Gene #1049: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NSUN2 MUTATED 1 3 5 1 1
NSUN2 WILD-TYPE 58 72 69 118 37
'NSUN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S10803.  Gene #1049: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NSUN2 MUTATED 1 4 3 2 1
NSUN2 WILD-TYPE 50 72 58 69 94
'NSUN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S10804.  Gene #1049: 'NSUN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NSUN2 MUTATED 2 3 0 0 1 1 1 1 2
NSUN2 WILD-TYPE 67 45 39 16 52 19 20 37 48
'CCNH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S10805.  Gene #1050: 'CCNH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCNH MUTATED 1 1 5
CCNH WILD-TYPE 41 172 142
'CCNH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.17

Table S10806.  Gene #1050: 'CCNH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCNH MUTATED 4 1 0
CCNH WILD-TYPE 58 72 75

Figure S2932.  Get High-res Image Gene #1050: 'CCNH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CCNH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0016 (Fisher's exact test), Q value = 0.033

Table S10807.  Gene #1050: 'CCNH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCNH MUTATED 0 0 6
CCNH WILD-TYPE 70 120 94

Figure S2933.  Get High-res Image Gene #1050: 'CCNH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CCNH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S10808.  Gene #1050: 'CCNH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCNH MUTATED 0 0 0 0 0 5 1 0 0
CCNH WILD-TYPE 41 26 30 29 39 64 19 14 22
'CCNH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S10809.  Gene #1050: 'CCNH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCNH MUTATED 1 0 4 2
CCNH WILD-TYPE 99 72 68 119
'CCNH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0774 (Fisher's exact test), Q value = 0.3

Table S10810.  Gene #1050: 'CCNH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCNH MUTATED 2 1 2 0 2
CCNH WILD-TYPE 57 74 72 119 36
'CCNH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S10811.  Gene #1050: 'CCNH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCNH MUTATED 0 2 2 1 1
CCNH WILD-TYPE 51 74 59 70 94
'CCNH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S10812.  Gene #1050: 'CCNH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCNH MUTATED 2 3 0 0 0 0 0 1 0
CCNH WILD-TYPE 67 45 39 16 53 20 21 37 50
'CCNH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S10813.  Gene #1050: 'CCNH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CCNH MUTATED 0 1 1 1 0 0
CCNH WILD-TYPE 13 15 13 10 11 9
'CCNH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.94

Table S10814.  Gene #1050: 'CCNH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CCNH MUTATED 1 0 0 0 0 0 2 0 0
CCNH WILD-TYPE 10 7 7 9 8 7 9 9 5
'IVD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.15

Table S10815.  Gene #1051: 'IVD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IVD MUTATED 2 0 3
IVD WILD-TYPE 40 173 144

Figure S2934.  Get High-res Image Gene #1051: 'IVD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IVD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 0.2

Table S10816.  Gene #1051: 'IVD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IVD MUTATED 4 0 1
IVD WILD-TYPE 58 73 74

Figure S2935.  Get High-res Image Gene #1051: 'IVD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'IVD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S10817.  Gene #1051: 'IVD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IVD MUTATED 0 1 4
IVD WILD-TYPE 70 119 96
'IVD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S10818.  Gene #1051: 'IVD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IVD MUTATED 0 0 0 0 0 4 0 1 0
IVD WILD-TYPE 41 26 30 29 39 65 20 13 22
'IVD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.3

Table S10819.  Gene #1051: 'IVD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IVD MUTATED 1 1 3 0
IVD WILD-TYPE 99 71 69 121
'IVD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0199 (Fisher's exact test), Q value = 0.14

Table S10820.  Gene #1051: 'IVD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IVD MUTATED 0 1 4 0 0
IVD WILD-TYPE 59 74 70 119 38

Figure S2936.  Get High-res Image Gene #1051: 'IVD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IVD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0499 (Fisher's exact test), Q value = 0.24

Table S10821.  Gene #1051: 'IVD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IVD MUTATED 0 3 2 0 0
IVD WILD-TYPE 51 73 59 71 95

Figure S2937.  Get High-res Image Gene #1051: 'IVD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IVD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S10822.  Gene #1051: 'IVD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IVD MUTATED 2 2 1 0 0 0 0 0 0
IVD WILD-TYPE 67 46 38 16 53 20 21 38 50
'PSMA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S10823.  Gene #1052: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PSMA2 MUTATED 0 0 6
PSMA2 WILD-TYPE 42 173 141

Figure S2938.  Get High-res Image Gene #1052: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PSMA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.1

Table S10824.  Gene #1052: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PSMA2 MUTATED 0 0 5
PSMA2 WILD-TYPE 62 73 70

Figure S2939.  Get High-res Image Gene #1052: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PSMA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S10825.  Gene #1052: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PSMA2 MUTATED 2 0 2
PSMA2 WILD-TYPE 68 120 98
'PSMA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S10826.  Gene #1052: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PSMA2 MUTATED 0 0 0 0 1 2 1 0 0
PSMA2 WILD-TYPE 41 26 30 29 38 67 19 14 22
'PSMA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 0.33

Table S10827.  Gene #1052: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PSMA2 MUTATED 0 3 2 1
PSMA2 WILD-TYPE 100 69 70 120
'PSMA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.1

Table S10828.  Gene #1052: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PSMA2 MUTATED 0 0 5 1 0
PSMA2 WILD-TYPE 59 75 69 118 38

Figure S2940.  Get High-res Image Gene #1052: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PSMA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S10829.  Gene #1052: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PSMA2 MUTATED 0 3 1 0 1
PSMA2 WILD-TYPE 51 73 60 71 94
'PSMA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S10830.  Gene #1052: 'PSMA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PSMA2 MUTATED 2 1 0 1 0 0 0 1 0
PSMA2 WILD-TYPE 67 47 39 15 53 20 21 37 50
'TUT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S10831.  Gene #1053: 'TUT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TUT1 MUTATED 2 0 0 1 0
TUT1 WILD-TYPE 30 18 46 26 23
'TUT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S10832.  Gene #1053: 'TUT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TUT1 MUTATED 2 1 0
TUT1 WILD-TYPE 41 66 36
'TUT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.14

Table S10833.  Gene #1053: 'TUT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TUT1 MUTATED 0 1 8
TUT1 WILD-TYPE 42 172 139

Figure S2941.  Get High-res Image Gene #1053: 'TUT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TUT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S10834.  Gene #1053: 'TUT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TUT1 MUTATED 3 0 3
TUT1 WILD-TYPE 59 73 72
'TUT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.013

Table S10835.  Gene #1053: 'TUT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TUT1 MUTATED 0 0 8
TUT1 WILD-TYPE 70 120 92

Figure S2942.  Get High-res Image Gene #1053: 'TUT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TUT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S10836.  Gene #1053: 'TUT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TUT1 MUTATED 1 0 0 0 1 5 1 0 0
TUT1 WILD-TYPE 40 26 30 29 38 64 19 14 22
'TUT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S10837.  Gene #1053: 'TUT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TUT1 MUTATED 0 2 4 3
TUT1 WILD-TYPE 100 70 68 118
'TUT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S10838.  Gene #1053: 'TUT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TUT1 MUTATED 1 2 3 1 2
TUT1 WILD-TYPE 58 73 71 118 36
'TUT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0671 (Fisher's exact test), Q value = 0.28

Table S10839.  Gene #1053: 'TUT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TUT1 MUTATED 1 5 0 0 3
TUT1 WILD-TYPE 50 71 61 71 92
'TUT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.9

Table S10840.  Gene #1053: 'TUT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TUT1 MUTATED 3 1 0 1 2 1 0 1 0
TUT1 WILD-TYPE 66 47 39 15 51 19 21 37 50
'AFF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10841.  Gene #1054: 'AFF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AFF1 MUTATED 1 0 1 1 0
AFF1 WILD-TYPE 31 18 45 26 23
'AFF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.79

Table S10842.  Gene #1054: 'AFF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AFF1 MUTATED 2 1 0
AFF1 WILD-TYPE 41 66 36
'AFF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S10843.  Gene #1054: 'AFF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AFF1 MUTATED 1 4 7
AFF1 WILD-TYPE 41 169 140
'AFF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.85

Table S10844.  Gene #1054: 'AFF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AFF1 MUTATED 2 2 5
AFF1 WILD-TYPE 60 71 70
'AFF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.21

Table S10845.  Gene #1054: 'AFF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AFF1 MUTATED 0 3 7
AFF1 WILD-TYPE 70 117 93

Figure S2943.  Get High-res Image Gene #1054: 'AFF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'AFF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.54

Table S10846.  Gene #1054: 'AFF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AFF1 MUTATED 2 0 0 0 0 5 2 0 1
AFF1 WILD-TYPE 39 26 30 29 39 64 18 14 21
'AFF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 0.99

Table S10847.  Gene #1054: 'AFF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AFF1 MUTATED 3 2 4 3
AFF1 WILD-TYPE 97 70 68 118
'AFF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S10848.  Gene #1054: 'AFF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AFF1 MUTATED 2 3 4 1 2
AFF1 WILD-TYPE 57 72 70 118 36
'AFF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.98

Table S10849.  Gene #1054: 'AFF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AFF1 MUTATED 2 4 2 1 2
AFF1 WILD-TYPE 49 72 59 70 93
'AFF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 0.94

Table S10850.  Gene #1054: 'AFF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AFF1 MUTATED 4 3 0 1 1 0 0 1 1
AFF1 WILD-TYPE 65 45 39 15 52 20 21 37 49
'AFF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S10851.  Gene #1054: 'AFF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AFF1 MUTATED 1 0 1 0 2 0
AFF1 WILD-TYPE 12 16 13 11 9 9
'AFF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 0.75

Table S10852.  Gene #1054: 'AFF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AFF1 MUTATED 1 0 0 0 0 0 2 0 1
AFF1 WILD-TYPE 10 7 7 9 8 7 9 9 4
'KRTAP10-11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S10853.  Gene #1055: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KRTAP10-11 MUTATED 0 2 3
KRTAP10-11 WILD-TYPE 42 171 144
'KRTAP10-11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.98

Table S10854.  Gene #1055: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KRTAP10-11 MUTATED 2 1 1
KRTAP10-11 WILD-TYPE 60 72 74
'KRTAP10-11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S10855.  Gene #1055: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KRTAP10-11 MUTATED 0 1 4
KRTAP10-11 WILD-TYPE 70 119 96
'KRTAP10-11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S10856.  Gene #1055: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KRTAP10-11 MUTATED 0 0 1 0 0 3 0 0 1
KRTAP10-11 WILD-TYPE 41 26 29 29 39 66 20 14 21
'KRTAP10-11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S10857.  Gene #1055: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KRTAP10-11 MUTATED 2 1 1 1
KRTAP10-11 WILD-TYPE 98 71 71 120
'KRTAP10-11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S10858.  Gene #1055: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KRTAP10-11 MUTATED 0 2 2 1 0
KRTAP10-11 WILD-TYPE 59 73 72 118 38
'KRTAP10-11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S10859.  Gene #1055: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KRTAP10-11 MUTATED 1 2 0 1 1
KRTAP10-11 WILD-TYPE 50 74 61 70 94
'KRTAP10-11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0858 (Fisher's exact test), Q value = 0.32

Table S10860.  Gene #1055: 'KRTAP10-11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KRTAP10-11 MUTATED 1 0 2 1 0 1 0 0 0
KRTAP10-11 WILD-TYPE 68 48 37 15 53 19 21 38 50
'CTCF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0508 (Fisher's exact test), Q value = 0.24

Table S10861.  Gene #1056: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CTCF MUTATED 5 0 1 1 0
CTCF WILD-TYPE 27 18 45 26 23
'CTCF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S10862.  Gene #1056: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CTCF MUTATED 4 2 1
CTCF WILD-TYPE 39 65 35
'CTCF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00443 (Fisher's exact test), Q value = 0.061

Table S10863.  Gene #1056: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CTCF MUTATED 4 2 11
CTCF WILD-TYPE 38 171 136

Figure S2944.  Get High-res Image Gene #1056: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTCF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0972 (Fisher's exact test), Q value = 0.34

Table S10864.  Gene #1056: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CTCF MUTATED 6 1 3
CTCF WILD-TYPE 56 72 72
'CTCF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S10865.  Gene #1056: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CTCF MUTATED 1 9 4
CTCF WILD-TYPE 69 111 96
'CTCF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S10866.  Gene #1056: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CTCF MUTATED 1 1 1 4 3 2 1 1 0
CTCF WILD-TYPE 40 25 29 25 36 67 19 13 22
'CTCF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.21

Table S10867.  Gene #1056: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CTCF MUTATED 1 7 2 7
CTCF WILD-TYPE 99 65 70 114

Figure S2945.  Get High-res Image Gene #1056: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00993 (Fisher's exact test), Q value = 0.094

Table S10868.  Gene #1056: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CTCF MUTATED 1 1 8 3 4
CTCF WILD-TYPE 58 74 66 116 34

Figure S2946.  Get High-res Image Gene #1056: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0092 (Fisher's exact test), Q value = 0.09

Table S10869.  Gene #1056: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CTCF MUTATED 1 8 1 0 7
CTCF WILD-TYPE 50 68 60 71 88

Figure S2947.  Get High-res Image Gene #1056: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S10870.  Gene #1056: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CTCF MUTATED 4 1 0 2 5 2 0 2 1
CTCF WILD-TYPE 65 47 39 14 48 18 21 36 49
'STYK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.95

Table S10871.  Gene #1057: 'STYK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STYK1 MUTATED 0 3 4
STYK1 WILD-TYPE 42 170 143
'STYK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S10872.  Gene #1057: 'STYK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STYK1 MUTATED 1 3 2
STYK1 WILD-TYPE 61 70 73
'STYK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.72

Table S10873.  Gene #1057: 'STYK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STYK1 MUTATED 0 4 2
STYK1 WILD-TYPE 70 116 98
'STYK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 0.83

Table S10874.  Gene #1057: 'STYK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STYK1 MUTATED 0 0 2 1 0 3 0 0 0
STYK1 WILD-TYPE 41 26 28 28 39 66 20 14 22
'STYK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.75

Table S10875.  Gene #1057: 'STYK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STYK1 MUTATED 4 1 1 1
STYK1 WILD-TYPE 96 71 71 120
'STYK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0318 (Fisher's exact test), Q value = 0.19

Table S10876.  Gene #1057: 'STYK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STYK1 MUTATED 0 4 2 0 1
STYK1 WILD-TYPE 59 71 72 119 37

Figure S2948.  Get High-res Image Gene #1057: 'STYK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STYK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S10877.  Gene #1057: 'STYK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STYK1 MUTATED 1 3 1 1 1
STYK1 WILD-TYPE 50 73 60 70 94
'STYK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.93

Table S10878.  Gene #1057: 'STYK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STYK1 MUTATED 2 0 1 1 2 0 0 1 0
STYK1 WILD-TYPE 67 48 38 15 51 20 21 37 50
'BCAP29 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0814 (Fisher's exact test), Q value = 0.31

Table S10879.  Gene #1058: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BCAP29 MUTATED 0 1 6
BCAP29 WILD-TYPE 42 172 141
'BCAP29 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S10880.  Gene #1058: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BCAP29 MUTATED 2 0 4
BCAP29 WILD-TYPE 60 73 71
'BCAP29 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S10881.  Gene #1058: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BCAP29 MUTATED 2 1 1
BCAP29 WILD-TYPE 68 119 99
'BCAP29 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.78

Table S10882.  Gene #1058: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BCAP29 MUTATED 2 0 0 1 1 0 0 0 0
BCAP29 WILD-TYPE 39 26 30 28 38 69 20 14 22
'BCAP29 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.63

Table S10883.  Gene #1058: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BCAP29 MUTATED 1 3 2 1
BCAP29 WILD-TYPE 99 69 70 120
'BCAP29 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0578 (Fisher's exact test), Q value = 0.26

Table S10884.  Gene #1058: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BCAP29 MUTATED 1 1 4 0 1
BCAP29 WILD-TYPE 58 74 70 119 37
'BCAP29 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0375 (Fisher's exact test), Q value = 0.21

Table S10885.  Gene #1058: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BCAP29 MUTATED 0 5 1 0 1
BCAP29 WILD-TYPE 51 71 60 71 94

Figure S2949.  Get High-res Image Gene #1058: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BCAP29 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S10886.  Gene #1058: 'BCAP29 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BCAP29 MUTATED 2 2 0 0 1 1 0 1 0
BCAP29 WILD-TYPE 67 46 39 16 52 19 21 37 50
'SERPINB7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S10887.  Gene #1059: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SERPINB7 MUTATED 1 2 5
SERPINB7 WILD-TYPE 41 171 142
'SERPINB7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0784 (Fisher's exact test), Q value = 0.3

Table S10888.  Gene #1059: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SERPINB7 MUTATED 4 0 2
SERPINB7 WILD-TYPE 58 73 73
'SERPINB7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S10889.  Gene #1059: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SERPINB7 MUTATED 0 6 2
SERPINB7 WILD-TYPE 70 114 98
'SERPINB7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.74

Table S10890.  Gene #1059: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SERPINB7 MUTATED 0 1 1 2 0 2 0 1 1
SERPINB7 WILD-TYPE 41 25 29 27 39 67 20 13 21
'SERPINB7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S10891.  Gene #1059: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SERPINB7 MUTATED 1 3 2 2
SERPINB7 WILD-TYPE 99 69 70 119
'SERPINB7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S10892.  Gene #1059: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SERPINB7 MUTATED 2 1 3 1 1
SERPINB7 WILD-TYPE 57 74 71 118 37
'SERPINB7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S10893.  Gene #1059: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SERPINB7 MUTATED 0 3 2 0 3
SERPINB7 WILD-TYPE 51 73 59 71 92
'SERPINB7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S10894.  Gene #1059: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SERPINB7 MUTATED 2 1 1 1 0 1 0 1 1
SERPINB7 WILD-TYPE 67 47 38 15 53 19 21 37 49
'SERPINB7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S10895.  Gene #1059: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SERPINB7 MUTATED 0 1 1 1 1 0
SERPINB7 WILD-TYPE 13 15 13 10 10 9
'SERPINB7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S10896.  Gene #1059: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SERPINB7 MUTATED 0 1 0 1 0 0 2 0 0
SERPINB7 WILD-TYPE 11 6 7 8 8 7 9 9 5
'SPAST MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0988 (Fisher's exact test), Q value = 0.34

Table S10897.  Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SPAST MUTATED 3 0 0 1 0
SPAST WILD-TYPE 29 18 46 26 23
'SPAST MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00955 (Fisher's exact test), Q value = 0.092

Table S10898.  Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SPAST MUTATED 4 0 0
SPAST WILD-TYPE 39 67 36

Figure S2950.  Get High-res Image Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SPAST MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.14

Table S10899.  Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SPAST MUTATED 0 1 8
SPAST WILD-TYPE 42 172 139

Figure S2951.  Get High-res Image Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SPAST MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 0.16

Table S10900.  Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SPAST MUTATED 4 1 0
SPAST WILD-TYPE 58 72 75

Figure S2952.  Get High-res Image Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SPAST MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S10901.  Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SPAST MUTATED 0 4 4
SPAST WILD-TYPE 70 116 96
'SPAST MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S10902.  Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SPAST MUTATED 0 0 1 0 3 3 0 1 0
SPAST WILD-TYPE 41 26 29 29 36 66 20 13 22
'SPAST MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S10903.  Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SPAST MUTATED 1 2 2 4
SPAST WILD-TYPE 99 70 70 117
'SPAST MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00468 (Fisher's exact test), Q value = 0.063

Table S10904.  Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SPAST MUTATED 1 1 3 0 4
SPAST WILD-TYPE 58 74 71 119 34

Figure S2953.  Get High-res Image Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SPAST MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S10905.  Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SPAST MUTATED 0 3 1 0 5
SPAST WILD-TYPE 51 73 60 71 90
'SPAST MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S10906.  Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SPAST MUTATED 0 3 0 1 0 0 0 4 1
SPAST WILD-TYPE 69 45 39 15 53 20 21 34 49

Figure S2954.  Get High-res Image Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SPAST MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.15

Table S10907.  Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SPAST MUTATED 1 0 0 0 3 0
SPAST WILD-TYPE 12 16 14 11 8 9

Figure S2955.  Get High-res Image Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SPAST MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S10908.  Gene #1060: 'SPAST MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SPAST MUTATED 0 0 1 1 0 0 2 0 0
SPAST WILD-TYPE 11 7 6 8 8 7 9 9 5
'NFKBIB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S10909.  Gene #1061: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NFKBIB MUTATED 0 4 1
NFKBIB WILD-TYPE 42 169 146
'NFKBIB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S10910.  Gene #1061: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NFKBIB MUTATED 1 2 1
NFKBIB WILD-TYPE 61 71 74
'NFKBIB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S10911.  Gene #1061: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NFKBIB MUTATED 0 1 3
NFKBIB WILD-TYPE 70 119 97
'NFKBIB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S10912.  Gene #1061: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NFKBIB MUTATED 1 0 0 1 0 2 0 0 0
NFKBIB WILD-TYPE 40 26 30 28 39 67 20 14 22
'NFKBIB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S10913.  Gene #1061: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NFKBIB MUTATED 1 1 2 1
NFKBIB WILD-TYPE 99 71 70 120
'NFKBIB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.95

Table S10914.  Gene #1061: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NFKBIB MUTATED 2 1 1 1 0
NFKBIB WILD-TYPE 57 74 73 118 38
'NFKBIB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S10915.  Gene #1061: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NFKBIB MUTATED 0 1 2 1 1
NFKBIB WILD-TYPE 51 75 59 70 94
'NFKBIB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S10916.  Gene #1061: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NFKBIB MUTATED 2 1 1 1 0 0 0 0 0
NFKBIB WILD-TYPE 67 47 38 15 53 20 21 38 50
'NFKBIB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S10917.  Gene #1061: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NFKBIB MUTATED 0 0 1 1 0 1
NFKBIB WILD-TYPE 13 16 13 10 11 8
'NFKBIB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S10918.  Gene #1061: 'NFKBIB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NFKBIB MUTATED 1 0 1 0 0 0 0 1 0
NFKBIB WILD-TYPE 10 7 6 9 8 7 11 8 5
'ARID5A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.21

Table S10919.  Gene #1062: 'ARID5A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARID5A MUTATED 0 1 7
ARID5A WILD-TYPE 42 172 140

Figure S2956.  Get High-res Image Gene #1062: 'ARID5A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARID5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S10920.  Gene #1062: 'ARID5A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARID5A MUTATED 3 1 3
ARID5A WILD-TYPE 59 72 72
'ARID5A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S10921.  Gene #1062: 'ARID5A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARID5A MUTATED 2 2 3
ARID5A WILD-TYPE 68 118 97
'ARID5A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S10922.  Gene #1062: 'ARID5A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARID5A MUTATED 2 0 0 2 0 3 0 0 0
ARID5A WILD-TYPE 39 26 30 27 39 66 20 14 22
'ARID5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.49

Table S10923.  Gene #1062: 'ARID5A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARID5A MUTATED 1 3 3 1
ARID5A WILD-TYPE 99 69 69 120
'ARID5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S10924.  Gene #1062: 'ARID5A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARID5A MUTATED 0 1 6 1 0
ARID5A WILD-TYPE 59 74 68 118 38

Figure S2957.  Get High-res Image Gene #1062: 'ARID5A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARID5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S10925.  Gene #1062: 'ARID5A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARID5A MUTATED 0 6 0 1 1
ARID5A WILD-TYPE 51 70 61 70 94

Figure S2958.  Get High-res Image Gene #1062: 'ARID5A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ARID5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S10926.  Gene #1062: 'ARID5A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARID5A MUTATED 1 3 1 1 1 1 0 0 0
ARID5A WILD-TYPE 68 45 38 15 52 19 21 38 50
'ARID5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S10927.  Gene #1062: 'ARID5A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ARID5A MUTATED 0 1 1 0 1 0
ARID5A WILD-TYPE 13 15 13 11 10 9
'ARID5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0412 (Fisher's exact test), Q value = 0.21

Table S10928.  Gene #1062: 'ARID5A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ARID5A MUTATED 0 0 0 0 0 0 3 0 0
ARID5A WILD-TYPE 11 7 7 9 8 7 8 9 5

Figure S2959.  Get High-res Image Gene #1062: 'ARID5A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CSNK2A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.95

Table S10929.  Gene #1063: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CSNK2A2 MUTATED 0 3 4
CSNK2A2 WILD-TYPE 42 170 143
'CSNK2A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S10930.  Gene #1063: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CSNK2A2 MUTATED 1 1 4
CSNK2A2 WILD-TYPE 61 72 71
'CSNK2A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S10931.  Gene #1063: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CSNK2A2 MUTATED 1 2 3
CSNK2A2 WILD-TYPE 69 118 97
'CSNK2A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S10932.  Gene #1063: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CSNK2A2 MUTATED 1 0 1 0 0 2 2 0 0
CSNK2A2 WILD-TYPE 40 26 29 29 39 67 18 14 22
'CSNK2A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S10933.  Gene #1063: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CSNK2A2 MUTATED 2 3 2 0
CSNK2A2 WILD-TYPE 98 69 70 121
'CSNK2A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.54

Table S10934.  Gene #1063: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CSNK2A2 MUTATED 1 1 4 1 0
CSNK2A2 WILD-TYPE 58 74 70 118 38
'CSNK2A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.19

Table S10935.  Gene #1063: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CSNK2A2 MUTATED 2 4 1 0 0
CSNK2A2 WILD-TYPE 49 72 60 71 95

Figure S2960.  Get High-res Image Gene #1063: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CSNK2A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0906 (Fisher's exact test), Q value = 0.33

Table S10936.  Gene #1063: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CSNK2A2 MUTATED 1 2 0 2 1 0 1 0 0
CSNK2A2 WILD-TYPE 68 46 39 14 52 20 20 38 50
'AK3L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S10937.  Gene #1064: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AK3L1 MUTATED 0 0 3
AK3L1 WILD-TYPE 42 173 144
'AK3L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S10938.  Gene #1064: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AK3L1 MUTATED 2 0 1
AK3L1 WILD-TYPE 60 73 74
'AK3L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0531 (Fisher's exact test), Q value = 0.25

Table S10939.  Gene #1064: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AK3L1 MUTATED 0 0 3
AK3L1 WILD-TYPE 70 120 97
'AK3L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 0.96

Table S10940.  Gene #1064: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AK3L1 MUTATED 0 0 0 0 0 3 0 0 0
AK3L1 WILD-TYPE 41 26 30 29 39 66 20 14 22
'AK3L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0801 (Fisher's exact test), Q value = 0.31

Table S10941.  Gene #1064: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AK3L1 MUTATED 0 1 2 0
AK3L1 WILD-TYPE 100 71 70 121
'AK3L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S10942.  Gene #1064: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AK3L1 MUTATED 1 0 2 0 0
AK3L1 WILD-TYPE 58 75 72 119 38
'AK3L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S10943.  Gene #1064: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AK3L1 MUTATED 0 2 1 0 0
AK3L1 WILD-TYPE 51 74 60 71 95
'AK3L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S10944.  Gene #1064: 'AK3L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AK3L1 MUTATED 2 1 0 0 0 0 0 0 0
AK3L1 WILD-TYPE 67 47 39 16 53 20 21 38 50
'IFITM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S10945.  Gene #1065: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IFITM3 MUTATED 1 3 2
IFITM3 WILD-TYPE 41 170 145
'IFITM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S10946.  Gene #1065: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IFITM3 MUTATED 2 3 1
IFITM3 WILD-TYPE 60 70 74
'IFITM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S10947.  Gene #1065: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IFITM3 MUTATED 0 2 4
IFITM3 WILD-TYPE 70 118 96
'IFITM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0705 (Fisher's exact test), Q value = 0.29

Table S10948.  Gene #1065: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IFITM3 MUTATED 0 0 0 0 0 2 2 0 2
IFITM3 WILD-TYPE 41 26 30 29 39 67 18 14 20
'IFITM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S10949.  Gene #1065: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IFITM3 MUTATED 2 1 3 0
IFITM3 WILD-TYPE 98 71 69 121
'IFITM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.071 (Fisher's exact test), Q value = 0.29

Table S10950.  Gene #1065: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IFITM3 MUTATED 3 2 1 0 0
IFITM3 WILD-TYPE 56 73 73 119 38
'IFITM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0732 (Fisher's exact test), Q value = 0.29

Table S10951.  Gene #1065: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IFITM3 MUTATED 2 3 1 0 0
IFITM3 WILD-TYPE 49 73 60 71 95
'IFITM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S10952.  Gene #1065: 'IFITM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IFITM3 MUTATED 2 2 1 0 1 0 0 0 0
IFITM3 WILD-TYPE 67 46 38 16 52 20 21 38 50
'ACTN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0876 (Fisher's exact test), Q value = 0.32

Table S10953.  Gene #1066: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ACTN1 MUTATED 0 2 7
ACTN1 WILD-TYPE 42 171 140
'ACTN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00826 (Fisher's exact test), Q value = 0.085

Table S10954.  Gene #1066: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ACTN1 MUTATED 5 1 0
ACTN1 WILD-TYPE 57 72 75

Figure S2961.  Get High-res Image Gene #1066: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ACTN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S10955.  Gene #1066: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ACTN1 MUTATED 1 4 3
ACTN1 WILD-TYPE 69 116 97
'ACTN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S10956.  Gene #1066: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ACTN1 MUTATED 1 1 2 0 1 3 0 0 0
ACTN1 WILD-TYPE 40 25 28 29 38 66 20 14 22
'ACTN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S10957.  Gene #1066: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ACTN1 MUTATED 2 0 3 4
ACTN1 WILD-TYPE 98 72 69 117
'ACTN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 0.99

Table S10958.  Gene #1066: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ACTN1 MUTATED 1 2 2 2 2
ACTN1 WILD-TYPE 58 73 72 117 36
'ACTN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.78

Table S10959.  Gene #1066: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ACTN1 MUTATED 2 2 1 0 4
ACTN1 WILD-TYPE 49 74 60 71 91
'ACTN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.79

Table S10960.  Gene #1066: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ACTN1 MUTATED 2 1 1 0 0 2 0 2 1
ACTN1 WILD-TYPE 67 47 38 16 53 18 21 36 49
'ACTN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S10961.  Gene #1066: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ACTN1 MUTATED 1 1 0 0 1 0
ACTN1 WILD-TYPE 12 15 14 11 10 9
'ACTN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S10962.  Gene #1066: 'ACTN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ACTN1 MUTATED 1 0 0 0 0 1 0 0 1
ACTN1 WILD-TYPE 10 7 7 9 8 6 11 9 4
'FAM193A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.001 (Fisher's exact test), Q value = 0.025

Table S10963.  Gene #1067: 'FAM193A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM193A MUTATED 1 2 14
FAM193A WILD-TYPE 41 171 133

Figure S2962.  Get High-res Image Gene #1067: 'FAM193A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM193A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00739 (Fisher's exact test), Q value = 0.08

Table S10964.  Gene #1067: 'FAM193A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM193A MUTATED 4 1 11
FAM193A WILD-TYPE 58 72 64

Figure S2963.  Get High-res Image Gene #1067: 'FAM193A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FAM193A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S10965.  Gene #1067: 'FAM193A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM193A MUTATED 1 3 7
FAM193A WILD-TYPE 69 117 93
'FAM193A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S10966.  Gene #1067: 'FAM193A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM193A MUTATED 2 0 0 3 1 4 1 0 0
FAM193A WILD-TYPE 39 26 30 26 38 65 19 14 22
'FAM193A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0093

Table S10967.  Gene #1067: 'FAM193A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM193A MUTATED 1 8 7 1
FAM193A WILD-TYPE 99 64 65 120

Figure S2964.  Get High-res Image Gene #1067: 'FAM193A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FAM193A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S10968.  Gene #1067: 'FAM193A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM193A MUTATED 1 2 13 0 1
FAM193A WILD-TYPE 58 73 61 119 37

Figure S2965.  Get High-res Image Gene #1067: 'FAM193A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM193A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S10969.  Gene #1067: 'FAM193A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM193A MUTATED 2 12 2 0 1
FAM193A WILD-TYPE 49 64 59 71 94

Figure S2966.  Get High-res Image Gene #1067: 'FAM193A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FAM193A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0084

Table S10970.  Gene #1067: 'FAM193A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM193A MUTATED 1 7 0 4 2 2 0 1 0
FAM193A WILD-TYPE 68 41 39 12 51 18 21 37 50

Figure S2967.  Get High-res Image Gene #1067: 'FAM193A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM193A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S10971.  Gene #1067: 'FAM193A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FAM193A MUTATED 0 1 1 0 2 0
FAM193A WILD-TYPE 13 15 13 11 9 9
'FAM193A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.92

Table S10972.  Gene #1067: 'FAM193A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FAM193A MUTATED 0 0 0 1 1 0 2 0 0
FAM193A WILD-TYPE 11 7 7 8 7 7 9 9 5
'TAF6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S10973.  Gene #1068: 'TAF6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TAF6 MUTATED 2 0 0 1 0
TAF6 WILD-TYPE 30 18 46 26 23
'TAF6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 0.21

Table S10974.  Gene #1068: 'TAF6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TAF6 MUTATED 3 0 0
TAF6 WILD-TYPE 40 67 36

Figure S2968.  Get High-res Image Gene #1068: 'TAF6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TAF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.94

Table S10975.  Gene #1068: 'TAF6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TAF6 MUTATED 1 3 5
TAF6 WILD-TYPE 41 170 142
'TAF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S10976.  Gene #1068: 'TAF6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TAF6 MUTATED 1 3 2
TAF6 WILD-TYPE 61 70 73
'TAF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S10977.  Gene #1068: 'TAF6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TAF6 MUTATED 1 2 4
TAF6 WILD-TYPE 69 118 96
'TAF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S10978.  Gene #1068: 'TAF6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TAF6 MUTATED 1 0 0 0 0 4 0 2 0
TAF6 WILD-TYPE 40 26 30 29 39 65 20 12 22
'TAF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S10979.  Gene #1068: 'TAF6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TAF6 MUTATED 4 1 1 3
TAF6 WILD-TYPE 96 71 71 118
'TAF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0293 (Fisher's exact test), Q value = 0.18

Table S10980.  Gene #1068: 'TAF6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TAF6 MUTATED 1 3 2 0 3
TAF6 WILD-TYPE 58 72 72 119 35

Figure S2969.  Get High-res Image Gene #1068: 'TAF6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TAF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S10981.  Gene #1068: 'TAF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TAF6 MUTATED 2 3 1 0 2
TAF6 WILD-TYPE 49 73 60 71 93
'TAF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S10982.  Gene #1068: 'TAF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TAF6 MUTATED 1 1 2 1 1 1 0 1 0
TAF6 WILD-TYPE 68 47 37 15 52 19 21 37 50
'CYP4F11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.098

Table S10983.  Gene #1069: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CYP4F11 MUTATED 0 0 6
CYP4F11 WILD-TYPE 42 173 141

Figure S2970.  Get High-res Image Gene #1069: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CYP4F11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S10984.  Gene #1069: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CYP4F11 MUTATED 2 0 3
CYP4F11 WILD-TYPE 60 73 72
'CYP4F11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0435 (Fisher's exact test), Q value = 0.22

Table S10985.  Gene #1069: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CYP4F11 MUTATED 3 0 3
CYP4F11 WILD-TYPE 67 120 97

Figure S2971.  Get High-res Image Gene #1069: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CYP4F11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S10986.  Gene #1069: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CYP4F11 MUTATED 1 0 0 0 1 4 0 0 0
CYP4F11 WILD-TYPE 40 26 30 29 38 65 20 14 22
'CYP4F11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0946 (Fisher's exact test), Q value = 0.34

Table S10987.  Gene #1069: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CYP4F11 MUTATED 0 2 3 1
CYP4F11 WILD-TYPE 100 70 69 120
'CYP4F11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00207 (Fisher's exact test), Q value = 0.039

Table S10988.  Gene #1069: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CYP4F11 MUTATED 0 0 5 0 1
CYP4F11 WILD-TYPE 59 75 69 119 37

Figure S2972.  Get High-res Image Gene #1069: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CYP4F11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00153 (Fisher's exact test), Q value = 0.032

Table S10989.  Gene #1069: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CYP4F11 MUTATED 0 5 0 0 0
CYP4F11 WILD-TYPE 51 71 61 71 95

Figure S2973.  Get High-res Image Gene #1069: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CYP4F11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.62

Table S10990.  Gene #1069: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CYP4F11 MUTATED 2 2 0 1 0 0 0 0 0
CYP4F11 WILD-TYPE 67 46 39 15 53 20 21 38 50
'CYP4F11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.75

Table S10991.  Gene #1069: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CYP4F11 MUTATED 0 2 0 0 1 0
CYP4F11 WILD-TYPE 13 14 14 11 10 9
'CYP4F11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.94

Table S10992.  Gene #1069: 'CYP4F11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CYP4F11 MUTATED 1 0 0 0 0 0 2 0 0
CYP4F11 WILD-TYPE 10 7 7 9 8 7 9 9 5
'MED13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0531 (Fisher's exact test), Q value = 0.25

Table S10993.  Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MED13 MUTATED 2 0 0 3 0
MED13 WILD-TYPE 30 18 46 24 23
'MED13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0688 (Fisher's exact test), Q value = 0.28

Table S10994.  Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MED13 MUTATED 4 1 0
MED13 WILD-TYPE 39 66 36
'MED13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00049 (Fisher's exact test), Q value = 0.016

Table S10995.  Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MED13 MUTATED 2 2 16
MED13 WILD-TYPE 40 171 131

Figure S2974.  Get High-res Image Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MED13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S10996.  Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MED13 MUTATED 4 4 7
MED13 WILD-TYPE 58 69 68
'MED13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S10997.  Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MED13 MUTATED 2 5 10
MED13 WILD-TYPE 68 115 90
'MED13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S10998.  Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MED13 MUTATED 1 1 2 2 3 7 1 0 0
MED13 WILD-TYPE 40 25 28 27 36 62 19 14 22
'MED13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.19

Table S10999.  Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MED13 MUTATED 1 7 6 6
MED13 WILD-TYPE 99 65 66 115

Figure S2975.  Get High-res Image Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MED13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S11000.  Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MED13 MUTATED 2 2 9 3 4
MED13 WILD-TYPE 57 73 65 116 34

Figure S2976.  Get High-res Image Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MED13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.73

Table S11001.  Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MED13 MUTATED 1 7 4 2 5
MED13 WILD-TYPE 50 69 57 69 90
'MED13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00109 (Fisher's exact test), Q value = 0.026

Table S11002.  Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MED13 MUTATED 3 4 0 5 0 2 1 3 1
MED13 WILD-TYPE 66 44 39 11 53 18 20 35 49

Figure S2977.  Get High-res Image Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MED13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00621 (Fisher's exact test), Q value = 0.074

Table S11003.  Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MED13 MUTATED 0 0 0 0 3 0
MED13 WILD-TYPE 13 16 14 11 8 9

Figure S2978.  Get High-res Image Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MED13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S11004.  Gene #1070: 'MED13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MED13 MUTATED 0 0 0 1 1 1 0 0 0
MED13 WILD-TYPE 11 7 7 8 7 6 11 9 5
'DACT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S11005.  Gene #1071: 'DACT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DACT1 MUTATED 2 0 0 1 0
DACT1 WILD-TYPE 30 18 46 26 23
'DACT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S11006.  Gene #1071: 'DACT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DACT1 MUTATED 2 0 1
DACT1 WILD-TYPE 41 67 35
'DACT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.0087

Table S11007.  Gene #1071: 'DACT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DACT1 MUTATED 2 0 12
DACT1 WILD-TYPE 40 173 135

Figure S2979.  Get High-res Image Gene #1071: 'DACT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DACT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 0.21

Table S11008.  Gene #1071: 'DACT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DACT1 MUTATED 4 0 6
DACT1 WILD-TYPE 58 73 69

Figure S2980.  Get High-res Image Gene #1071: 'DACT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DACT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S11009.  Gene #1071: 'DACT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DACT1 MUTATED 4 2 7
DACT1 WILD-TYPE 66 118 93
'DACT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S11010.  Gene #1071: 'DACT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DACT1 MUTATED 1 1 1 2 2 5 1 0 0
DACT1 WILD-TYPE 40 25 29 27 37 64 19 14 22
'DACT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S11011.  Gene #1071: 'DACT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DACT1 MUTATED 0 6 5 4
DACT1 WILD-TYPE 100 66 67 117

Figure S2981.  Get High-res Image Gene #1071: 'DACT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DACT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00386 (Fisher's exact test), Q value = 0.055

Table S11012.  Gene #1071: 'DACT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DACT1 MUTATED 2 1 8 1 3
DACT1 WILD-TYPE 57 74 66 118 35

Figure S2982.  Get High-res Image Gene #1071: 'DACT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DACT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.18

Table S11013.  Gene #1071: 'DACT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DACT1 MUTATED 0 8 2 1 3
DACT1 WILD-TYPE 51 68 59 70 92

Figure S2983.  Get High-res Image Gene #1071: 'DACT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DACT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0832 (Fisher's exact test), Q value = 0.31

Table S11014.  Gene #1071: 'DACT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DACT1 MUTATED 2 2 0 3 3 1 1 2 0
DACT1 WILD-TYPE 67 46 39 13 50 19 20 36 50
'PTTG1IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S11015.  Gene #1072: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTTG1IP MUTATED 1 1 5
PTTG1IP WILD-TYPE 41 172 142
'PTTG1IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0726 (Fisher's exact test), Q value = 0.29

Table S11016.  Gene #1072: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTTG1IP MUTATED 5 1 1
PTTG1IP WILD-TYPE 57 72 74
'PTTG1IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S11017.  Gene #1072: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTTG1IP MUTATED 0 3 4
PTTG1IP WILD-TYPE 70 117 96
'PTTG1IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.99

Table S11018.  Gene #1072: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTTG1IP MUTATED 0 1 0 0 1 3 1 0 1
PTTG1IP WILD-TYPE 41 25 30 29 38 66 19 14 21
'PTTG1IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S11019.  Gene #1072: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTTG1IP MUTATED 1 4 1 1
PTTG1IP WILD-TYPE 99 68 71 120
'PTTG1IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0404 (Fisher's exact test), Q value = 0.21

Table S11020.  Gene #1072: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTTG1IP MUTATED 0 1 5 1 0
PTTG1IP WILD-TYPE 59 74 69 118 38

Figure S2984.  Get High-res Image Gene #1072: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTTG1IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.18

Table S11021.  Gene #1072: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTTG1IP MUTATED 1 5 0 0 1
PTTG1IP WILD-TYPE 50 71 61 71 94

Figure S2985.  Get High-res Image Gene #1072: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PTTG1IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0631 (Fisher's exact test), Q value = 0.27

Table S11022.  Gene #1072: 'PTTG1IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTTG1IP MUTATED 3 0 0 1 0 2 0 0 1
PTTG1IP WILD-TYPE 66 48 39 15 53 18 21 38 49
'ATP12A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S11023.  Gene #1073: 'ATP12A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATP12A MUTATED 4 0 1 3 1
ATP12A WILD-TYPE 28 18 45 24 22
'ATP12A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0532 (Fisher's exact test), Q value = 0.25

Table S11024.  Gene #1073: 'ATP12A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATP12A MUTATED 6 2 1
ATP12A WILD-TYPE 37 65 35
'ATP12A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00592 (Fisher's exact test), Q value = 0.073

Table S11025.  Gene #1073: 'ATP12A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATP12A MUTATED 4 5 17
ATP12A WILD-TYPE 38 168 130

Figure S2986.  Get High-res Image Gene #1073: 'ATP12A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP12A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S11026.  Gene #1073: 'ATP12A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATP12A MUTATED 6 5 5
ATP12A WILD-TYPE 56 68 70
'ATP12A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S11027.  Gene #1073: 'ATP12A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATP12A MUTATED 3 7 10
ATP12A WILD-TYPE 67 113 90
'ATP12A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S11028.  Gene #1073: 'ATP12A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATP12A MUTATED 3 0 2 2 4 7 1 1 0
ATP12A WILD-TYPE 38 26 28 27 35 62 19 13 22
'ATP12A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S11029.  Gene #1073: 'ATP12A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATP12A MUTATED 6 7 4 9
ATP12A WILD-TYPE 94 65 68 112
'ATP12A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00128 (Fisher's exact test), Q value = 0.029

Table S11030.  Gene #1073: 'ATP12A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATP12A MUTATED 0 6 10 4 6
ATP12A WILD-TYPE 59 69 64 115 32

Figure S2987.  Get High-res Image Gene #1073: 'ATP12A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATP12A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.22

Table S11031.  Gene #1073: 'ATP12A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATP12A MUTATED 3 10 1 2 9
ATP12A WILD-TYPE 48 66 60 69 86

Figure S2988.  Get High-res Image Gene #1073: 'ATP12A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ATP12A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0145 (Fisher's exact test), Q value = 0.12

Table S11032.  Gene #1073: 'ATP12A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATP12A MUTATED 7 1 3 4 1 1 1 6 1
ATP12A WILD-TYPE 62 47 36 12 52 19 20 32 49

Figure S2989.  Get High-res Image Gene #1073: 'ATP12A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATP12A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.88

Table S11033.  Gene #1073: 'ATP12A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ATP12A MUTATED 1 0 2 0 1 1
ATP12A WILD-TYPE 12 16 12 11 10 8
'ATP12A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S11034.  Gene #1073: 'ATP12A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ATP12A MUTATED 0 0 0 1 1 2 1 0 0
ATP12A WILD-TYPE 11 7 7 8 7 5 10 9 5
'DHX32 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S11035.  Gene #1074: 'DHX32 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DHX32 MUTATED 1 4 5
DHX32 WILD-TYPE 41 169 142
'DHX32 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S11036.  Gene #1074: 'DHX32 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DHX32 MUTATED 2 2 4
DHX32 WILD-TYPE 60 71 71
'DHX32 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S11037.  Gene #1074: 'DHX32 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DHX32 MUTATED 2 3 4
DHX32 WILD-TYPE 68 117 96
'DHX32 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S11038.  Gene #1074: 'DHX32 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DHX32 MUTATED 4 0 1 1 1 1 0 0 1
DHX32 WILD-TYPE 37 26 29 28 38 68 20 14 21
'DHX32 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.17

Table S11039.  Gene #1074: 'DHX32 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DHX32 MUTATED 0 4 4 2
DHX32 WILD-TYPE 100 68 68 119

Figure S2990.  Get High-res Image Gene #1074: 'DHX32 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DHX32 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0753 (Fisher's exact test), Q value = 0.3

Table S11040.  Gene #1074: 'DHX32 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DHX32 MUTATED 2 3 3 0 2
DHX32 WILD-TYPE 57 72 71 119 36
'DHX32 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.987 (Fisher's exact test), Q value = 1

Table S11041.  Gene #1074: 'DHX32 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DHX32 MUTATED 2 2 1 2 3
DHX32 WILD-TYPE 49 74 60 69 92
'DHX32 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S11042.  Gene #1074: 'DHX32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DHX32 MUTATED 2 3 0 0 1 1 0 2 1
DHX32 WILD-TYPE 67 45 39 16 52 19 21 36 49
'DHX32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S11043.  Gene #1074: 'DHX32 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DHX32 MUTATED 0 2 1 0 0 0
DHX32 WILD-TYPE 13 14 13 11 11 9
'DHX32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S11044.  Gene #1074: 'DHX32 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DHX32 MUTATED 1 1 0 0 0 0 1 0 0
DHX32 WILD-TYPE 10 6 7 9 8 7 10 9 5
'SLITRK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S11045.  Gene #1075: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLITRK2 MUTATED 4 0 0 3 0
SLITRK2 WILD-TYPE 28 18 46 24 23

Figure S2991.  Get High-res Image Gene #1075: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SLITRK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0349 (Fisher's exact test), Q value = 0.2

Table S11046.  Gene #1075: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLITRK2 MUTATED 5 2 0
SLITRK2 WILD-TYPE 38 65 36

Figure S2992.  Get High-res Image Gene #1075: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SLITRK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 0.2

Table S11047.  Gene #1075: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLITRK2 MUTATED 2 5 14
SLITRK2 WILD-TYPE 40 168 133

Figure S2993.  Get High-res Image Gene #1075: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLITRK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S11048.  Gene #1075: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLITRK2 MUTATED 7 5 2
SLITRK2 WILD-TYPE 55 68 73
'SLITRK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 0.94

Table S11049.  Gene #1075: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLITRK2 MUTATED 3 7 8
SLITRK2 WILD-TYPE 67 113 92
'SLITRK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S11050.  Gene #1075: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLITRK2 MUTATED 1 1 3 2 4 6 0 0 1
SLITRK2 WILD-TYPE 40 25 27 27 35 63 20 14 21
'SLITRK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S11051.  Gene #1075: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLITRK2 MUTATED 5 2 6 8
SLITRK2 WILD-TYPE 95 70 66 113
'SLITRK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.65

Table S11052.  Gene #1075: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLITRK2 MUTATED 2 5 6 4 4
SLITRK2 WILD-TYPE 57 70 68 115 34
'SLITRK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.55

Table S11053.  Gene #1075: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLITRK2 MUTATED 4 4 3 1 9
SLITRK2 WILD-TYPE 47 72 58 70 86
'SLITRK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S11054.  Gene #1075: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLITRK2 MUTATED 2 5 1 1 3 2 1 5 1
SLITRK2 WILD-TYPE 67 43 38 15 50 18 20 33 49
'SLITRK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S11055.  Gene #1075: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLITRK2 MUTATED 1 0 0 0 2 0
SLITRK2 WILD-TYPE 12 16 14 11 9 9
'SLITRK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S11056.  Gene #1075: 'SLITRK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLITRK2 MUTATED 0 0 0 0 0 0 2 0 1
SLITRK2 WILD-TYPE 11 7 7 9 8 7 9 9 4
'TMC8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00764 (Fisher's exact test), Q value = 0.082

Table S11057.  Gene #1076: 'TMC8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMC8 MUTATED 0 0 7
TMC8 WILD-TYPE 42 173 140

Figure S2994.  Get High-res Image Gene #1076: 'TMC8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TMC8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S11058.  Gene #1076: 'TMC8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TMC8 MUTATED 3 0 3
TMC8 WILD-TYPE 59 73 72
'TMC8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S11059.  Gene #1076: 'TMC8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TMC8 MUTATED 2 1 2
TMC8 WILD-TYPE 68 119 98
'TMC8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S11060.  Gene #1076: 'TMC8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TMC8 MUTATED 1 1 0 0 1 1 1 0 0
TMC8 WILD-TYPE 40 25 30 29 38 68 19 14 22
'TMC8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S11061.  Gene #1076: 'TMC8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMC8 MUTATED 0 2 3 2
TMC8 WILD-TYPE 100 70 69 119
'TMC8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S11062.  Gene #1076: 'TMC8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMC8 MUTATED 0 0 5 1 1
TMC8 WILD-TYPE 59 75 69 118 37

Figure S2995.  Get High-res Image Gene #1076: 'TMC8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TMC8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0777 (Fisher's exact test), Q value = 0.3

Table S11063.  Gene #1076: 'TMC8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMC8 MUTATED 0 4 0 0 3
TMC8 WILD-TYPE 51 72 61 71 92
'TMC8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0813 (Fisher's exact test), Q value = 0.31

Table S11064.  Gene #1076: 'TMC8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMC8 MUTATED 0 3 0 1 0 0 0 2 1
TMC8 WILD-TYPE 69 45 39 15 53 20 21 36 49
'EMR3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S11065.  Gene #1077: 'EMR3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EMR3 MUTATED 2 1 0 2 0
EMR3 WILD-TYPE 30 17 46 25 23
'EMR3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0665 (Fisher's exact test), Q value = 0.28

Table S11066.  Gene #1077: 'EMR3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EMR3 MUTATED 4 1 0
EMR3 WILD-TYPE 39 66 36
'EMR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S11067.  Gene #1077: 'EMR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EMR3 MUTATED 0 4 12
EMR3 WILD-TYPE 42 169 135

Figure S2996.  Get High-res Image Gene #1077: 'EMR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EMR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S11068.  Gene #1077: 'EMR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EMR3 MUTATED 3 3 5
EMR3 WILD-TYPE 59 70 70
'EMR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S11069.  Gene #1077: 'EMR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EMR3 MUTATED 3 6 4
EMR3 WILD-TYPE 67 114 96
'EMR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S11070.  Gene #1077: 'EMR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EMR3 MUTATED 2 1 1 1 1 5 1 1 0
EMR3 WILD-TYPE 39 25 29 28 38 64 19 13 22
'EMR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S11071.  Gene #1077: 'EMR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EMR3 MUTATED 2 6 3 5
EMR3 WILD-TYPE 98 66 69 116
'EMR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S11072.  Gene #1077: 'EMR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EMR3 MUTATED 0 3 6 4 3
EMR3 WILD-TYPE 59 72 68 115 35
'EMR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0734 (Fisher's exact test), Q value = 0.29

Table S11073.  Gene #1077: 'EMR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EMR3 MUTATED 2 6 1 0 6
EMR3 WILD-TYPE 49 70 60 71 89
'EMR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0231 (Fisher's exact test), Q value = 0.16

Table S11074.  Gene #1077: 'EMR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EMR3 MUTATED 4 1 0 2 0 3 2 2 1
EMR3 WILD-TYPE 65 47 39 14 53 17 19 36 49

Figure S2997.  Get High-res Image Gene #1077: 'EMR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'VPS33A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00855 (Fisher's exact test), Q value = 0.087

Table S11075.  Gene #1078: 'VPS33A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
VPS33A MUTATED 4 0 0 0 0
VPS33A WILD-TYPE 28 18 46 27 23

Figure S2998.  Get High-res Image Gene #1078: 'VPS33A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'VPS33A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.095

Table S11076.  Gene #1078: 'VPS33A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
VPS33A MUTATED 4 0 0
VPS33A WILD-TYPE 39 67 36

Figure S2999.  Get High-res Image Gene #1078: 'VPS33A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'VPS33A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00203 (Fisher's exact test), Q value = 0.038

Table S11077.  Gene #1078: 'VPS33A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
VPS33A MUTATED 0 0 8
VPS33A WILD-TYPE 42 173 139

Figure S3000.  Get High-res Image Gene #1078: 'VPS33A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VPS33A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.2

Table S11078.  Gene #1078: 'VPS33A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
VPS33A MUTATED 0 0 4
VPS33A WILD-TYPE 62 73 71

Figure S3001.  Get High-res Image Gene #1078: 'VPS33A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'VPS33A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S11079.  Gene #1078: 'VPS33A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
VPS33A MUTATED 1 2 4
VPS33A WILD-TYPE 69 118 96
'VPS33A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S11080.  Gene #1078: 'VPS33A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
VPS33A MUTATED 1 0 0 1 1 3 1 0 0
VPS33A WILD-TYPE 40 26 30 28 38 66 19 14 22
'VPS33A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S11081.  Gene #1078: 'VPS33A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
VPS33A MUTATED 0 3 2 3
VPS33A WILD-TYPE 100 69 70 118
'VPS33A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0072

Table S11082.  Gene #1078: 'VPS33A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
VPS33A MUTATED 0 0 4 0 4
VPS33A WILD-TYPE 59 75 70 119 34

Figure S3002.  Get High-res Image Gene #1078: 'VPS33A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VPS33A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S11083.  Gene #1078: 'VPS33A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
VPS33A MUTATED 0 3 2 0 3
VPS33A WILD-TYPE 51 73 59 71 92
'VPS33A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S11084.  Gene #1078: 'VPS33A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
VPS33A MUTATED 0 2 0 2 1 0 1 2 0
VPS33A WILD-TYPE 69 46 39 14 52 20 20 36 50

Figure S3003.  Get High-res Image Gene #1078: 'VPS33A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BRE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S11085.  Gene #1079: 'BRE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BRE MUTATED 2 2 5
BRE WILD-TYPE 40 171 142
'BRE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00557 (Fisher's exact test), Q value = 0.07

Table S11086.  Gene #1079: 'BRE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BRE MUTATED 1 0 7
BRE WILD-TYPE 61 73 68

Figure S3004.  Get High-res Image Gene #1079: 'BRE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BRE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S11087.  Gene #1079: 'BRE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BRE MUTATED 1 6 3
BRE WILD-TYPE 69 114 97
'BRE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 0.31

Table S11088.  Gene #1079: 'BRE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BRE MUTATED 1 1 0 4 1 1 2 0 0
BRE WILD-TYPE 40 25 30 25 38 68 18 14 22
'BRE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00813 (Fisher's exact test), Q value = 0.085

Table S11089.  Gene #1079: 'BRE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BRE MUTATED 0 6 1 3
BRE WILD-TYPE 100 66 71 118

Figure S3005.  Get High-res Image Gene #1079: 'BRE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BRE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S11090.  Gene #1079: 'BRE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BRE MUTATED 0 2 4 2 2
BRE WILD-TYPE 59 73 70 117 36
'BRE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S11091.  Gene #1079: 'BRE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BRE MUTATED 3 2 0 1 4
BRE WILD-TYPE 48 74 61 70 91
'BRE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0195 (Fisher's exact test), Q value = 0.14

Table S11092.  Gene #1079: 'BRE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BRE MUTATED 2 0 0 1 1 2 0 4 0
BRE WILD-TYPE 67 48 39 15 52 18 21 34 50

Figure S3006.  Get High-res Image Gene #1079: 'BRE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NKTR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S11093.  Gene #1080: 'NKTR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NKTR MUTATED 2 0 1 1 0
NKTR WILD-TYPE 30 18 45 26 23
'NKTR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S11094.  Gene #1080: 'NKTR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NKTR MUTATED 3 1 0
NKTR WILD-TYPE 40 66 36
'NKTR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.044 (Fisher's exact test), Q value = 0.22

Table S11095.  Gene #1080: 'NKTR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NKTR MUTATED 3 2 7
NKTR WILD-TYPE 39 171 140

Figure S3007.  Get High-res Image Gene #1080: 'NKTR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NKTR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S11096.  Gene #1080: 'NKTR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NKTR MUTATED 2 3 4
NKTR WILD-TYPE 60 70 71
'NKTR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S11097.  Gene #1080: 'NKTR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NKTR MUTATED 2 7 3
NKTR WILD-TYPE 68 113 97
'NKTR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S11098.  Gene #1080: 'NKTR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NKTR MUTATED 0 3 1 1 2 3 2 0 0
NKTR WILD-TYPE 41 23 29 28 37 66 18 14 22
'NKTR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.94

Table S11099.  Gene #1080: 'NKTR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NKTR MUTATED 5 3 1 4
NKTR WILD-TYPE 95 69 71 117
'NKTR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0899 (Fisher's exact test), Q value = 0.33

Table S11100.  Gene #1080: 'NKTR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NKTR MUTATED 0 4 4 2 3
NKTR WILD-TYPE 59 71 70 117 35
'NKTR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.86

Table S11101.  Gene #1080: 'NKTR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NKTR MUTATED 1 3 0 3 4
NKTR WILD-TYPE 50 73 61 68 91
'NKTR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S11102.  Gene #1080: 'NKTR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NKTR MUTATED 3 1 0 2 1 0 0 3 1
NKTR WILD-TYPE 66 47 39 14 52 20 21 35 49
'NKTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 0.28

Table S11103.  Gene #1080: 'NKTR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NKTR MUTATED 2 0 0 0 2 0
NKTR WILD-TYPE 11 16 14 11 9 9
'NKTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.89

Table S11104.  Gene #1080: 'NKTR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NKTR MUTATED 0 0 0 2 0 0 1 1 0
NKTR WILD-TYPE 11 7 7 7 8 7 10 8 5
'ICA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S11105.  Gene #1081: 'ICA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ICA1 MUTATED 0 2 4
ICA1 WILD-TYPE 42 171 143
'ICA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11106.  Gene #1081: 'ICA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ICA1 MUTATED 1 1 2
ICA1 WILD-TYPE 61 72 73
'ICA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S11107.  Gene #1081: 'ICA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ICA1 MUTATED 0 1 3
ICA1 WILD-TYPE 70 119 97
'ICA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.89

Table S11108.  Gene #1081: 'ICA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ICA1 MUTATED 2 0 0 0 0 1 0 0 1
ICA1 WILD-TYPE 39 26 30 29 39 68 20 14 21
'ICA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S11109.  Gene #1081: 'ICA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ICA1 MUTATED 1 0 3 2
ICA1 WILD-TYPE 99 72 69 119
'ICA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00872 (Fisher's exact test), Q value = 0.088

Table S11110.  Gene #1081: 'ICA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ICA1 MUTATED 3 0 1 0 2
ICA1 WILD-TYPE 56 75 73 119 36

Figure S3008.  Get High-res Image Gene #1081: 'ICA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ICA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.49

Table S11111.  Gene #1081: 'ICA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ICA1 MUTATED 2 0 2 0 2
ICA1 WILD-TYPE 49 76 59 71 93
'ICA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S11112.  Gene #1081: 'ICA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ICA1 MUTATED 1 2 1 0 0 0 1 1 0
ICA1 WILD-TYPE 68 46 38 16 53 20 20 37 50
'ZFYVE16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S11113.  Gene #1082: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZFYVE16 MUTATED 3 0 1 2 0
ZFYVE16 WILD-TYPE 29 18 45 25 23
'ZFYVE16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S11114.  Gene #1082: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZFYVE16 MUTATED 3 1 2
ZFYVE16 WILD-TYPE 40 66 34
'ZFYVE16 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0048

Table S11115.  Gene #1082: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZFYVE16 MUTATED 1 1 15
ZFYVE16 WILD-TYPE 41 172 132

Figure S3009.  Get High-res Image Gene #1082: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZFYVE16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 0.34

Table S11116.  Gene #1082: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZFYVE16 MUTATED 3 1 7
ZFYVE16 WILD-TYPE 59 72 68
'ZFYVE16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.5

Table S11117.  Gene #1082: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZFYVE16 MUTATED 1 5 7
ZFYVE16 WILD-TYPE 69 115 93
'ZFYVE16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S11118.  Gene #1082: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZFYVE16 MUTATED 2 0 2 3 0 4 1 0 1
ZFYVE16 WILD-TYPE 39 26 28 26 39 65 19 14 21
'ZFYVE16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S11119.  Gene #1082: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZFYVE16 MUTATED 0 6 5 6
ZFYVE16 WILD-TYPE 100 66 67 115

Figure S3010.  Get High-res Image Gene #1082: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZFYVE16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0364 (Fisher's exact test), Q value = 0.2

Table S11120.  Gene #1082: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZFYVE16 MUTATED 2 1 8 3 3
ZFYVE16 WILD-TYPE 57 74 66 116 35

Figure S3011.  Get High-res Image Gene #1082: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZFYVE16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S11121.  Gene #1082: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZFYVE16 MUTATED 0 6 4 1 4
ZFYVE16 WILD-TYPE 51 70 57 70 91
'ZFYVE16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0117 (Fisher's exact test), Q value = 0.1

Table S11122.  Gene #1082: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZFYVE16 MUTATED 1 6 0 3 1 1 0 1 2
ZFYVE16 WILD-TYPE 68 42 39 13 52 19 21 37 48

Figure S3012.  Get High-res Image Gene #1082: 'ZFYVE16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RDBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S11123.  Gene #1083: 'RDBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RDBP MUTATED 0 0 6
RDBP WILD-TYPE 42 173 141

Figure S3013.  Get High-res Image Gene #1083: 'RDBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RDBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.18

Table S11124.  Gene #1083: 'RDBP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RDBP MUTATED 1 0 5
RDBP WILD-TYPE 61 73 70

Figure S3014.  Get High-res Image Gene #1083: 'RDBP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RDBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.98

Table S11125.  Gene #1083: 'RDBP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RDBP MUTATED 0 2 2
RDBP WILD-TYPE 70 118 98
'RDBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.54

Table S11126.  Gene #1083: 'RDBP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RDBP MUTATED 0 0 0 0 1 1 2 0 0
RDBP WILD-TYPE 41 26 30 29 38 68 18 14 22
'RDBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.18

Table S11127.  Gene #1083: 'RDBP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RDBP MUTATED 0 4 1 1
RDBP WILD-TYPE 100 68 71 120

Figure S3015.  Get High-res Image Gene #1083: 'RDBP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RDBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00211 (Fisher's exact test), Q value = 0.039

Table S11128.  Gene #1083: 'RDBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RDBP MUTATED 0 0 5 0 1
RDBP WILD-TYPE 59 75 69 119 37

Figure S3016.  Get High-res Image Gene #1083: 'RDBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RDBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.1

Table S11129.  Gene #1083: 'RDBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RDBP MUTATED 0 5 0 0 1
RDBP WILD-TYPE 51 71 61 71 94

Figure S3017.  Get High-res Image Gene #1083: 'RDBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RDBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00454 (Fisher's exact test), Q value = 0.062

Table S11130.  Gene #1083: 'RDBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RDBP MUTATED 0 1 0 3 1 0 0 1 0
RDBP WILD-TYPE 69 47 39 13 52 20 21 37 50

Figure S3018.  Get High-res Image Gene #1083: 'RDBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LMOD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S11131.  Gene #1084: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LMOD1 MUTATED 0 4 8
LMOD1 WILD-TYPE 42 169 139
'LMOD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11132.  Gene #1084: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LMOD1 MUTATED 3 3 4
LMOD1 WILD-TYPE 59 70 71
'LMOD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S11133.  Gene #1084: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LMOD1 MUTATED 2 3 7
LMOD1 WILD-TYPE 68 117 93
'LMOD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S11134.  Gene #1084: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LMOD1 MUTATED 3 1 0 1 2 3 1 0 1
LMOD1 WILD-TYPE 38 25 30 28 37 66 19 14 21
'LMOD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S11135.  Gene #1084: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LMOD1 MUTATED 2 4 3 3
LMOD1 WILD-TYPE 98 68 69 118
'LMOD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S11136.  Gene #1084: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LMOD1 MUTATED 3 3 3 2 1
LMOD1 WILD-TYPE 56 72 71 117 37
'LMOD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S11137.  Gene #1084: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LMOD1 MUTATED 3 2 2 0 5
LMOD1 WILD-TYPE 48 74 59 71 90
'LMOD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S11138.  Gene #1084: 'LMOD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LMOD1 MUTATED 1 3 1 1 1 0 1 2 2
LMOD1 WILD-TYPE 68 45 38 15 52 20 20 36 48
'AP1G1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S11139.  Gene #1085: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AP1G1 MUTATED 2 0 0 1 0
AP1G1 WILD-TYPE 30 18 46 26 23
'AP1G1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S11140.  Gene #1085: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AP1G1 MUTATED 2 0 1
AP1G1 WILD-TYPE 41 67 35
'AP1G1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S11141.  Gene #1085: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AP1G1 MUTATED 0 4 7
AP1G1 WILD-TYPE 42 169 140
'AP1G1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S11142.  Gene #1085: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AP1G1 MUTATED 4 1 3
AP1G1 WILD-TYPE 58 72 72
'AP1G1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S11143.  Gene #1085: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AP1G1 MUTATED 0 3 5
AP1G1 WILD-TYPE 70 117 95
'AP1G1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 0.98

Table S11144.  Gene #1085: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AP1G1 MUTATED 1 0 0 2 1 3 0 1 0
AP1G1 WILD-TYPE 40 26 30 27 38 66 20 13 22
'AP1G1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S11145.  Gene #1085: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AP1G1 MUTATED 4 3 1 3
AP1G1 WILD-TYPE 96 69 71 118
'AP1G1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S11146.  Gene #1085: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AP1G1 MUTATED 2 4 2 1 2
AP1G1 WILD-TYPE 57 71 72 118 36
'AP1G1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S11147.  Gene #1085: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AP1G1 MUTATED 1 4 2 1 2
AP1G1 WILD-TYPE 50 72 59 70 93
'AP1G1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S11148.  Gene #1085: 'AP1G1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AP1G1 MUTATED 2 1 3 1 1 0 0 1 1
AP1G1 WILD-TYPE 67 47 36 15 52 20 21 37 49
'TRPV2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00183 (Fisher's exact test), Q value = 0.036

Table S11149.  Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TRPV2 MUTATED 5 0 0 0 0
TRPV2 WILD-TYPE 27 18 46 27 23

Figure S3019.  Get High-res Image Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRPV2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00272 (Fisher's exact test), Q value = 0.044

Table S11150.  Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TRPV2 MUTATED 5 0 0
TRPV2 WILD-TYPE 38 67 36

Figure S3020.  Get High-res Image Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TRPV2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00052 (Fisher's exact test), Q value = 0.016

Table S11151.  Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRPV2 MUTATED 1 0 10
TRPV2 WILD-TYPE 41 173 137

Figure S3021.  Get High-res Image Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRPV2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.45

Table S11152.  Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRPV2 MUTATED 3 0 3
TRPV2 WILD-TYPE 59 73 72
'TRPV2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0387 (Fisher's exact test), Q value = 0.21

Table S11153.  Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRPV2 MUTATED 0 3 7
TRPV2 WILD-TYPE 70 117 93

Figure S3022.  Get High-res Image Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TRPV2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.62

Table S11154.  Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRPV2 MUTATED 0 0 0 1 2 6 1 0 0
TRPV2 WILD-TYPE 41 26 30 28 37 63 19 14 22
'TRPV2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 0.31

Table S11155.  Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRPV2 MUTATED 0 4 3 4
TRPV2 WILD-TYPE 100 68 69 117
'TRPV2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0039 (Fisher's exact test), Q value = 0.056

Table S11156.  Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRPV2 MUTATED 0 1 5 1 4
TRPV2 WILD-TYPE 59 74 69 118 34

Figure S3023.  Get High-res Image Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRPV2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00698 (Fisher's exact test), Q value = 0.078

Table S11157.  Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRPV2 MUTATED 0 6 0 0 5
TRPV2 WILD-TYPE 51 70 61 71 90

Figure S3024.  Get High-res Image Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TRPV2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 0.31

Table S11158.  Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRPV2 MUTATED 1 2 0 2 2 0 2 2 0
TRPV2 WILD-TYPE 68 46 39 14 51 20 19 36 50
'TRPV2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S11159.  Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TRPV2 MUTATED 0 0 1 0 2 0
TRPV2 WILD-TYPE 13 16 13 11 9 9
'TRPV2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S11160.  Gene #1086: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TRPV2 MUTATED 0 0 0 1 0 0 2 0 0
TRPV2 WILD-TYPE 11 7 7 8 8 7 9 9 5
'ABLIM3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00768 (Fisher's exact test), Q value = 0.082

Table S11161.  Gene #1087: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ABLIM3 MUTATED 5 0 0 1 0
ABLIM3 WILD-TYPE 27 18 46 26 23

Figure S3025.  Get High-res Image Gene #1087: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ABLIM3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00701 (Fisher's exact test), Q value = 0.078

Table S11162.  Gene #1087: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ABLIM3 MUTATED 5 0 1
ABLIM3 WILD-TYPE 38 67 35

Figure S3026.  Get High-res Image Gene #1087: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ABLIM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.28

Table S11163.  Gene #1087: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ABLIM3 MUTATED 1 4 11
ABLIM3 WILD-TYPE 41 169 136
'ABLIM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S11164.  Gene #1087: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ABLIM3 MUTATED 2 4 4
ABLIM3 WILD-TYPE 60 69 71
'ABLIM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.65

Table S11165.  Gene #1087: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ABLIM3 MUTATED 1 4 6
ABLIM3 WILD-TYPE 69 116 94
'ABLIM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.95

Table S11166.  Gene #1087: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ABLIM3 MUTATED 2 0 0 2 3 4 0 0 0
ABLIM3 WILD-TYPE 39 26 30 27 36 65 20 14 22
'ABLIM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S11167.  Gene #1087: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ABLIM3 MUTATED 4 2 5 5
ABLIM3 WILD-TYPE 96 70 67 116
'ABLIM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 0.21

Table S11168.  Gene #1087: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ABLIM3 MUTATED 2 4 5 1 4
ABLIM3 WILD-TYPE 57 71 69 118 34

Figure S3027.  Get High-res Image Gene #1087: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ABLIM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S11169.  Gene #1087: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ABLIM3 MUTATED 1 4 4 3 4
ABLIM3 WILD-TYPE 50 72 57 68 91
'ABLIM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0987 (Fisher's exact test), Q value = 0.34

Table S11170.  Gene #1087: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ABLIM3 MUTATED 3 5 0 1 2 0 1 4 0
ABLIM3 WILD-TYPE 66 43 39 15 51 20 20 34 50
'ABLIM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.56

Table S11171.  Gene #1087: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ABLIM3 MUTATED 1 0 0 1 2 0
ABLIM3 WILD-TYPE 12 16 14 10 9 9
'ABLIM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S11172.  Gene #1087: 'ABLIM3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ABLIM3 MUTATED 0 0 1 2 0 0 1 0 0
ABLIM3 WILD-TYPE 11 7 6 7 8 7 10 9 5
'STX7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S11173.  Gene #1088: 'STX7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
STX7 MUTATED 2 0 0 1 0
STX7 WILD-TYPE 30 18 46 26 23
'STX7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S11174.  Gene #1088: 'STX7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
STX7 MUTATED 2 0 1
STX7 WILD-TYPE 41 67 35
'STX7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S11175.  Gene #1088: 'STX7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STX7 MUTATED 0 0 3
STX7 WILD-TYPE 42 173 144
'STX7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.25

Table S11176.  Gene #1088: 'STX7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STX7 MUTATED 0 0 3
STX7 WILD-TYPE 70 120 97
'STX7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S11177.  Gene #1088: 'STX7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STX7 MUTATED 1 0 0 0 0 1 1 0 0
STX7 WILD-TYPE 40 26 30 29 39 68 19 14 22
'STX7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.65

Table S11178.  Gene #1088: 'STX7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STX7 MUTATED 0 0 1 3
STX7 WILD-TYPE 100 72 71 118
'STX7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S11179.  Gene #1088: 'STX7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STX7 MUTATED 1 0 0 1 2
STX7 WILD-TYPE 58 75 74 118 36
'STX7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S11180.  Gene #1088: 'STX7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STX7 MUTATED 0 0 1 1 1
STX7 WILD-TYPE 51 76 60 70 94
'STX7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.99

Table S11181.  Gene #1088: 'STX7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STX7 MUTATED 0 1 0 0 1 0 0 1 0
STX7 WILD-TYPE 69 47 39 16 52 20 21 37 50
'LEPRE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0443 (Fisher's exact test), Q value = 0.22

Table S11182.  Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LEPRE1 MUTATED 2 1 6
LEPRE1 WILD-TYPE 40 172 141

Figure S3028.  Get High-res Image Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LEPRE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.2

Table S11183.  Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LEPRE1 MUTATED 3 0 6
LEPRE1 WILD-TYPE 59 73 69

Figure S3029.  Get High-res Image Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LEPRE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S11184.  Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LEPRE1 MUTATED 3 3 3
LEPRE1 WILD-TYPE 67 117 97
'LEPRE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S11185.  Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LEPRE1 MUTATED 0 0 0 2 1 3 2 0 1
LEPRE1 WILD-TYPE 41 26 30 27 38 66 18 14 21
'LEPRE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0069

Table S11186.  Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LEPRE1 MUTATED 0 6 3 0
LEPRE1 WILD-TYPE 100 66 69 121

Figure S3030.  Get High-res Image Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LEPRE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0048

Table S11187.  Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LEPRE1 MUTATED 1 0 8 0 0
LEPRE1 WILD-TYPE 58 75 66 119 38

Figure S3031.  Get High-res Image Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LEPRE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S11188.  Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LEPRE1 MUTATED 0 8 1 0 0
LEPRE1 WILD-TYPE 51 68 60 71 95

Figure S3032.  Get High-res Image Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LEPRE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0257 (Fisher's exact test), Q value = 0.17

Table S11189.  Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LEPRE1 MUTATED 3 2 0 3 1 0 0 0 0
LEPRE1 WILD-TYPE 66 46 39 13 52 20 21 38 50

Figure S3033.  Get High-res Image Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LEPRE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.19

Table S11190.  Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LEPRE1 MUTATED 0 1 0 0 3 0
LEPRE1 WILD-TYPE 13 15 14 11 8 9

Figure S3034.  Get High-res Image Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'LEPRE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S11191.  Gene #1089: 'LEPRE1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LEPRE1 MUTATED 0 1 0 1 1 1 0 0 0
LEPRE1 WILD-TYPE 11 6 7 8 7 6 11 9 5
'KIAA0240 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0975 (Fisher's exact test), Q value = 0.34

Table S11192.  Gene #1090: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIAA0240 MUTATED 3 0 0 1 0
KIAA0240 WILD-TYPE 29 18 46 26 23
'KIAA0240 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00969 (Fisher's exact test), Q value = 0.093

Table S11193.  Gene #1090: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIAA0240 MUTATED 4 0 0
KIAA0240 WILD-TYPE 39 67 36

Figure S3035.  Get High-res Image Gene #1090: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KIAA0240 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00076 (Fisher's exact test), Q value = 0.021

Table S11194.  Gene #1090: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA0240 MUTATED 0 0 9
KIAA0240 WILD-TYPE 42 173 138

Figure S3036.  Get High-res Image Gene #1090: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0240 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S11195.  Gene #1090: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA0240 MUTATED 3 0 2
KIAA0240 WILD-TYPE 59 73 73
'KIAA0240 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S11196.  Gene #1090: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA0240 MUTATED 1 1 4
KIAA0240 WILD-TYPE 69 119 96
'KIAA0240 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 0.93

Table S11197.  Gene #1090: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA0240 MUTATED 0 1 0 0 1 4 0 0 0
KIAA0240 WILD-TYPE 41 25 30 29 38 65 20 14 22
'KIAA0240 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S11198.  Gene #1090: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA0240 MUTATED 0 2 2 5
KIAA0240 WILD-TYPE 100 70 70 116
'KIAA0240 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00182 (Fisher's exact test), Q value = 0.036

Table S11199.  Gene #1090: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA0240 MUTATED 0 0 4 1 4
KIAA0240 WILD-TYPE 59 75 70 118 34

Figure S3037.  Get High-res Image Gene #1090: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S11200.  Gene #1090: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA0240 MUTATED 0 3 1 0 4
KIAA0240 WILD-TYPE 51 73 60 71 91
'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S11201.  Gene #1090: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA0240 MUTATED 2 1 0 1 0 1 1 1 1
KIAA0240 WILD-TYPE 67 47 39 15 53 19 20 37 49
'HLA-B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0079

Table S11202.  Gene #1091: 'HLA-B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HLA-B MUTATED 0 0 11
HLA-B WILD-TYPE 42 173 136

Figure S3038.  Get High-res Image Gene #1091: 'HLA-B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HLA-B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S11203.  Gene #1091: 'HLA-B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HLA-B MUTATED 3 0 7
HLA-B WILD-TYPE 59 73 68

Figure S3039.  Get High-res Image Gene #1091: 'HLA-B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HLA-B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S11204.  Gene #1091: 'HLA-B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HLA-B MUTATED 1 5 4
HLA-B WILD-TYPE 69 115 96
'HLA-B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S11205.  Gene #1091: 'HLA-B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HLA-B MUTATED 1 1 0 3 0 3 1 0 1
HLA-B WILD-TYPE 40 25 30 26 39 66 19 14 21
'HLA-B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0065

Table S11206.  Gene #1091: 'HLA-B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HLA-B MUTATED 0 8 2 1
HLA-B WILD-TYPE 100 64 70 120

Figure S3040.  Get High-res Image Gene #1091: 'HLA-B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HLA-B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S11207.  Gene #1091: 'HLA-B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HLA-B MUTATED 0 0 10 0 1
HLA-B WILD-TYPE 59 75 64 119 37

Figure S3041.  Get High-res Image Gene #1091: 'HLA-B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0069

Table S11208.  Gene #1091: 'HLA-B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HLA-B MUTATED 0 9 1 0 1
HLA-B WILD-TYPE 51 67 60 71 94

Figure S3042.  Get High-res Image Gene #1091: 'HLA-B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HLA-B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S11209.  Gene #1091: 'HLA-B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HLA-B MUTATED 4 2 0 2 1 1 0 1 0
HLA-B WILD-TYPE 65 46 39 14 52 19 21 37 50
'NEK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 0.34

Table S11210.  Gene #1092: 'NEK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NEK1 MUTATED 3 0 0 1 0
NEK1 WILD-TYPE 29 18 46 26 23
'NEK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S11211.  Gene #1092: 'NEK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NEK1 MUTATED 2 1 1
NEK1 WILD-TYPE 41 66 35
'NEK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0061 (Fisher's exact test), Q value = 0.074

Table S11212.  Gene #1092: 'NEK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NEK1 MUTATED 1 1 10
NEK1 WILD-TYPE 41 172 137

Figure S3043.  Get High-res Image Gene #1092: 'NEK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NEK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.77

Table S11213.  Gene #1092: 'NEK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NEK1 MUTATED 3 1 4
NEK1 WILD-TYPE 59 72 71
'NEK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S11214.  Gene #1092: 'NEK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NEK1 MUTATED 1 4 5
NEK1 WILD-TYPE 69 116 95
'NEK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S11215.  Gene #1092: 'NEK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NEK1 MUTATED 2 0 1 2 0 5 0 0 0
NEK1 WILD-TYPE 39 26 29 27 39 64 20 14 22
'NEK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S11216.  Gene #1092: 'NEK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NEK1 MUTATED 1 4 3 4
NEK1 WILD-TYPE 99 68 69 117
'NEK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0922 (Fisher's exact test), Q value = 0.33

Table S11217.  Gene #1092: 'NEK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NEK1 MUTATED 1 1 6 2 2
NEK1 WILD-TYPE 58 74 68 117 36
'NEK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S11218.  Gene #1092: 'NEK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NEK1 MUTATED 0 6 1 2 3
NEK1 WILD-TYPE 51 70 60 69 92
'NEK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.73

Table S11219.  Gene #1092: 'NEK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NEK1 MUTATED 2 3 0 1 3 1 0 2 0
NEK1 WILD-TYPE 67 45 39 15 50 19 21 36 50
'NEK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S11220.  Gene #1092: 'NEK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NEK1 MUTATED 1 1 0 0 1 0
NEK1 WILD-TYPE 12 15 14 11 10 9
'NEK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S11221.  Gene #1092: 'NEK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NEK1 MUTATED 0 0 0 2 0 0 1 0 0
NEK1 WILD-TYPE 11 7 7 7 8 7 10 9 5
'RNASEL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11222.  Gene #1093: 'RNASEL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RNASEL MUTATED 1 0 1 1 0
RNASEL WILD-TYPE 31 18 45 26 23
'RNASEL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S11223.  Gene #1093: 'RNASEL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RNASEL MUTATED 2 0 1
RNASEL WILD-TYPE 41 67 35
'RNASEL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S11224.  Gene #1093: 'RNASEL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RNASEL MUTATED 1 3 8
RNASEL WILD-TYPE 41 170 139
'RNASEL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.92

Table S11225.  Gene #1093: 'RNASEL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RNASEL MUTATED 4 2 4
RNASEL WILD-TYPE 58 71 71
'RNASEL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S11226.  Gene #1093: 'RNASEL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RNASEL MUTATED 1 2 8
RNASEL WILD-TYPE 69 118 92

Figure S3044.  Get High-res Image Gene #1093: 'RNASEL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RNASEL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S11227.  Gene #1093: 'RNASEL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RNASEL MUTATED 4 0 0 0 2 5 0 0 0
RNASEL WILD-TYPE 37 26 30 29 37 64 20 14 22
'RNASEL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 0.33

Table S11228.  Gene #1093: 'RNASEL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RNASEL MUTATED 2 2 6 2
RNASEL WILD-TYPE 98 70 66 119
'RNASEL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S11229.  Gene #1093: 'RNASEL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RNASEL MUTATED 2 2 5 1 2
RNASEL WILD-TYPE 57 73 69 118 36
'RNASEL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.63

Table S11230.  Gene #1093: 'RNASEL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RNASEL MUTATED 1 4 3 0 3
RNASEL WILD-TYPE 50 72 58 71 92
'RNASEL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0745 (Fisher's exact test), Q value = 0.3

Table S11231.  Gene #1093: 'RNASEL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RNASEL MUTATED 1 6 0 0 1 1 0 1 1
RNASEL WILD-TYPE 68 42 39 16 52 19 21 37 49
'RNASEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.91

Table S11232.  Gene #1093: 'RNASEL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RNASEL MUTATED 1 2 0 1 2 0
RNASEL WILD-TYPE 12 14 14 10 9 9
'RNASEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.56

Table S11233.  Gene #1093: 'RNASEL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RNASEL MUTATED 1 0 1 0 0 0 3 0 1
RNASEL WILD-TYPE 10 7 6 9 8 7 8 9 4
'ALCAM MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11234.  Gene #1094: 'ALCAM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ALCAM MUTATED 1 5 5
ALCAM WILD-TYPE 41 168 142
'ALCAM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S11235.  Gene #1094: 'ALCAM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ALCAM MUTATED 2 3 4
ALCAM WILD-TYPE 60 70 71
'ALCAM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S11236.  Gene #1094: 'ALCAM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ALCAM MUTATED 0 7 4
ALCAM WILD-TYPE 70 113 96
'ALCAM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S11237.  Gene #1094: 'ALCAM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ALCAM MUTATED 2 1 0 3 1 2 1 0 1
ALCAM WILD-TYPE 39 25 30 26 38 67 19 14 21
'ALCAM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.53

Table S11238.  Gene #1094: 'ALCAM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ALCAM MUTATED 2 2 5 2
ALCAM WILD-TYPE 98 70 67 119
'ALCAM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0991 (Fisher's exact test), Q value = 0.34

Table S11239.  Gene #1094: 'ALCAM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ALCAM MUTATED 4 1 4 1 1
ALCAM WILD-TYPE 55 74 70 118 37
'ALCAM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S11240.  Gene #1094: 'ALCAM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ALCAM MUTATED 3 4 2 0 2
ALCAM WILD-TYPE 48 72 59 71 93
'ALCAM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S11241.  Gene #1094: 'ALCAM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ALCAM MUTATED 1 4 1 1 2 0 1 1 0
ALCAM WILD-TYPE 68 44 38 15 51 20 20 37 50
'ALCAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S11242.  Gene #1094: 'ALCAM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ALCAM MUTATED 0 0 0 1 3 0
ALCAM WILD-TYPE 13 16 14 10 8 9

Figure S3045.  Get High-res Image Gene #1094: 'ALCAM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ALCAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.74

Table S11243.  Gene #1094: 'ALCAM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ALCAM MUTATED 0 0 1 2 0 0 1 0 0
ALCAM WILD-TYPE 11 7 6 7 8 7 10 9 5
'SLC30A8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0652 (Fisher's exact test), Q value = 0.28

Table S11244.  Gene #1095: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC30A8 MUTATED 4 0 1 0 0
SLC30A8 WILD-TYPE 28 18 45 27 23
'SLC30A8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0687 (Fisher's exact test), Q value = 0.28

Table S11245.  Gene #1095: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC30A8 MUTATED 4 1 0
SLC30A8 WILD-TYPE 39 66 36
'SLC30A8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S11246.  Gene #1095: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC30A8 MUTATED 0 4 9
SLC30A8 WILD-TYPE 42 169 138
'SLC30A8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S11247.  Gene #1095: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC30A8 MUTATED 3 2 3
SLC30A8 WILD-TYPE 59 71 72
'SLC30A8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.94

Table S11248.  Gene #1095: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC30A8 MUTATED 3 3 5
SLC30A8 WILD-TYPE 67 117 95
'SLC30A8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S11249.  Gene #1095: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC30A8 MUTATED 2 0 1 1 2 3 1 1 0
SLC30A8 WILD-TYPE 39 26 29 28 37 66 19 13 22
'SLC30A8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.84

Table S11250.  Gene #1095: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC30A8 MUTATED 3 4 1 6
SLC30A8 WILD-TYPE 97 68 71 115
'SLC30A8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S11251.  Gene #1095: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC30A8 MUTATED 2 2 4 1 5
SLC30A8 WILD-TYPE 57 73 70 118 33

Figure S3046.  Get High-res Image Gene #1095: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC30A8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0542 (Fisher's exact test), Q value = 0.25

Table S11252.  Gene #1095: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC30A8 MUTATED 0 5 3 0 6
SLC30A8 WILD-TYPE 51 71 58 71 89
'SLC30A8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S11253.  Gene #1095: 'SLC30A8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC30A8 MUTATED 3 2 2 1 1 0 1 3 1
SLC30A8 WILD-TYPE 66 46 37 15 52 20 20 35 49
'CREG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S11254.  Gene #1096: 'CREG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CREG2 MUTATED 1 3 1
CREG2 WILD-TYPE 41 170 146
'CREG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.28

Table S11255.  Gene #1096: 'CREG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CREG2 MUTATED 0 3 0
CREG2 WILD-TYPE 62 70 75
'CREG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S11256.  Gene #1096: 'CREG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CREG2 MUTATED 1 0 2
CREG2 WILD-TYPE 69 120 98
'CREG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S11257.  Gene #1096: 'CREG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CREG2 MUTATED 0 0 0 0 0 1 2 0 0
CREG2 WILD-TYPE 41 26 30 29 39 68 18 14 22
'CREG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.64

Table S11258.  Gene #1096: 'CREG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CREG2 MUTATED 3 0 0 2
CREG2 WILD-TYPE 97 72 72 119
'CREG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S11259.  Gene #1096: 'CREG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CREG2 MUTATED 1 2 0 1 1
CREG2 WILD-TYPE 58 73 74 118 37
'CREG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S11260.  Gene #1096: 'CREG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CREG2 MUTATED 2 0 0 1 2
CREG2 WILD-TYPE 49 76 61 70 93
'CREG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.95

Table S11261.  Gene #1096: 'CREG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CREG2 MUTATED 3 0 0 0 0 0 0 1 1
CREG2 WILD-TYPE 66 48 39 16 53 20 21 37 49
'MSH4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S11262.  Gene #1097: 'MSH4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MSH4 MUTATED 1 0 0 2 0
MSH4 WILD-TYPE 31 18 46 25 23
'MSH4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.92

Table S11263.  Gene #1097: 'MSH4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MSH4 MUTATED 0 2 1
MSH4 WILD-TYPE 43 65 35
'MSH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S11264.  Gene #1097: 'MSH4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MSH4 MUTATED 2 4 6
MSH4 WILD-TYPE 40 169 141
'MSH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S11265.  Gene #1097: 'MSH4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MSH4 MUTATED 5 2 2
MSH4 WILD-TYPE 57 71 73
'MSH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S11266.  Gene #1097: 'MSH4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MSH4 MUTATED 2 3 4
MSH4 WILD-TYPE 68 117 96
'MSH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S11267.  Gene #1097: 'MSH4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MSH4 MUTATED 2 1 2 1 1 2 0 0 0
MSH4 WILD-TYPE 39 25 28 28 38 67 20 14 22
'MSH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.76

Table S11268.  Gene #1097: 'MSH4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MSH4 MUTATED 1 3 3 5
MSH4 WILD-TYPE 99 69 69 116
'MSH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S11269.  Gene #1097: 'MSH4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MSH4 MUTATED 3 2 2 5 0
MSH4 WILD-TYPE 56 73 72 114 38
'MSH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S11270.  Gene #1097: 'MSH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MSH4 MUTATED 0 3 3 1 5
MSH4 WILD-TYPE 51 73 58 70 90
'MSH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.62

Table S11271.  Gene #1097: 'MSH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MSH4 MUTATED 1 2 0 1 4 1 0 0 3
MSH4 WILD-TYPE 68 46 39 15 49 19 21 38 47
'PANK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S11272.  Gene #1098: 'PANK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PANK3 MUTATED 2 0 0 1 0
PANK3 WILD-TYPE 30 18 46 26 23
'PANK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S11273.  Gene #1098: 'PANK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PANK3 MUTATED 2 1 0
PANK3 WILD-TYPE 41 66 36
'PANK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.96

Table S11274.  Gene #1098: 'PANK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PANK3 MUTATED 1 2 2
PANK3 WILD-TYPE 41 171 145
'PANK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S11275.  Gene #1098: 'PANK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PANK3 MUTATED 2 0 1
PANK3 WILD-TYPE 60 73 74
'PANK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.78

Table S11276.  Gene #1098: 'PANK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PANK3 MUTATED 0 3 3
PANK3 WILD-TYPE 70 117 97
'PANK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S11277.  Gene #1098: 'PANK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PANK3 MUTATED 0 0 1 1 1 1 2 0 0
PANK3 WILD-TYPE 41 26 29 28 38 68 18 14 22
'PANK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S11278.  Gene #1098: 'PANK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PANK3 MUTATED 1 1 1 3
PANK3 WILD-TYPE 99 71 71 118
'PANK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S11279.  Gene #1098: 'PANK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PANK3 MUTATED 2 0 1 1 2
PANK3 WILD-TYPE 57 75 73 118 36
'PANK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S11280.  Gene #1098: 'PANK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PANK3 MUTATED 0 2 1 0 3
PANK3 WILD-TYPE 51 74 60 71 92
'PANK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S11281.  Gene #1098: 'PANK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PANK3 MUTATED 1 1 0 1 0 1 0 2 0
PANK3 WILD-TYPE 68 47 39 15 53 19 21 36 50
'DNMT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.14

Table S11282.  Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DNMT1 MUTATED 7 0 1 2 1
DNMT1 WILD-TYPE 25 18 45 25 22

Figure S3047.  Get High-res Image Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DNMT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0073 (Fisher's exact test), Q value = 0.08

Table S11283.  Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DNMT1 MUTATED 8 2 1
DNMT1 WILD-TYPE 35 65 35

Figure S3048.  Get High-res Image Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DNMT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00108 (Fisher's exact test), Q value = 0.026

Table S11284.  Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DNMT1 MUTATED 0 3 15
DNMT1 WILD-TYPE 42 170 132

Figure S3049.  Get High-res Image Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNMT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S11285.  Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DNMT1 MUTATED 2 0 4
DNMT1 WILD-TYPE 60 73 71
'DNMT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.6

Table S11286.  Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DNMT1 MUTATED 3 3 7
DNMT1 WILD-TYPE 67 117 93
'DNMT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S11287.  Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DNMT1 MUTATED 1 0 1 1 3 6 0 0 1
DNMT1 WILD-TYPE 40 26 29 28 36 63 20 14 21
'DNMT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00098 (Fisher's exact test), Q value = 0.025

Table S11288.  Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DNMT1 MUTATED 0 6 1 11
DNMT1 WILD-TYPE 100 66 71 110

Figure S3050.  Get High-res Image Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DNMT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00178 (Fisher's exact test), Q value = 0.035

Table S11289.  Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DNMT1 MUTATED 0 2 5 4 7
DNMT1 WILD-TYPE 59 73 69 115 31

Figure S3051.  Get High-res Image Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DNMT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00737 (Fisher's exact test), Q value = 0.08

Table S11290.  Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DNMT1 MUTATED 0 4 0 2 10
DNMT1 WILD-TYPE 51 72 61 69 85

Figure S3052.  Get High-res Image Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DNMT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S11291.  Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DNMT1 MUTATED 1 2 0 2 1 1 3 5 1
DNMT1 WILD-TYPE 68 46 39 14 52 19 18 33 49

Figure S3053.  Get High-res Image Gene #1099: 'DNMT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'UCHL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11292.  Gene #1100: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UCHL5 MUTATED 0 2 2
UCHL5 WILD-TYPE 42 171 145
'UCHL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11293.  Gene #1100: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UCHL5 MUTATED 1 1 2
UCHL5 WILD-TYPE 61 72 73
'UCHL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S11294.  Gene #1100: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UCHL5 MUTATED 0 3 0
UCHL5 WILD-TYPE 70 117 100
'UCHL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0603 (Fisher's exact test), Q value = 0.26

Table S11295.  Gene #1100: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UCHL5 MUTATED 0 2 0 1 0 0 0 0 0
UCHL5 WILD-TYPE 41 24 30 28 39 69 20 14 22
'UCHL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S11296.  Gene #1100: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UCHL5 MUTATED 1 2 0 1
UCHL5 WILD-TYPE 99 70 72 120
'UCHL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11297.  Gene #1100: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UCHL5 MUTATED 0 1 1 2 0
UCHL5 WILD-TYPE 59 74 73 117 38
'UCHL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S11298.  Gene #1100: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UCHL5 MUTATED 2 0 0 0 2
UCHL5 WILD-TYPE 49 76 61 71 93
'UCHL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.19

Table S11299.  Gene #1100: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UCHL5 MUTATED 0 0 0 0 0 2 0 1 1
UCHL5 WILD-TYPE 69 48 39 16 53 18 21 37 49

Figure S3054.  Get High-res Image Gene #1100: 'UCHL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HERC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00507 (Fisher's exact test), Q value = 0.067

Table S11300.  Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HERC1 MUTATED 6 2 0 2 0
HERC1 WILD-TYPE 26 16 46 25 23

Figure S3055.  Get High-res Image Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HERC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S11301.  Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HERC1 MUTATED 7 2 1
HERC1 WILD-TYPE 36 65 35

Figure S3056.  Get High-res Image Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HERC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00343 (Fisher's exact test), Q value = 0.052

Table S11302.  Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HERC1 MUTATED 2 7 21
HERC1 WILD-TYPE 40 166 126

Figure S3057.  Get High-res Image Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HERC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.21

Table S11303.  Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HERC1 MUTATED 3 5 13
HERC1 WILD-TYPE 59 68 62

Figure S3058.  Get High-res Image Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HERC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.65

Table S11304.  Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HERC1 MUTATED 3 10 11
HERC1 WILD-TYPE 67 110 89
'HERC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S11305.  Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HERC1 MUTATED 2 1 1 5 3 9 2 1 0
HERC1 WILD-TYPE 39 25 29 24 36 60 18 13 22
'HERC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S11306.  Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HERC1 MUTATED 10 7 5 9
HERC1 WILD-TYPE 90 65 67 112
'HERC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0018 (Fisher's exact test), Q value = 0.035

Table S11307.  Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HERC1 MUTATED 1 11 9 4 6
HERC1 WILD-TYPE 58 64 65 115 32

Figure S3059.  Get High-res Image Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HERC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.98

Table S11308.  Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HERC1 MUTATED 4 9 3 5 9
HERC1 WILD-TYPE 47 67 58 66 86
'HERC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S11309.  Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HERC1 MUTATED 4 3 2 4 7 2 1 5 2
HERC1 WILD-TYPE 65 45 37 12 46 18 20 33 48
'HERC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S11310.  Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HERC1 MUTATED 1 1 0 0 3 0
HERC1 WILD-TYPE 12 15 14 11 8 9
'HERC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.37

Table S11311.  Gene #1101: 'HERC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HERC1 MUTATED 0 0 0 3 1 0 1 0 0
HERC1 WILD-TYPE 11 7 7 6 7 7 10 9 5
'PROM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S11312.  Gene #1102: 'PROM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PROM1 MUTATED 0 4 8
PROM1 WILD-TYPE 42 169 139
'PROM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11313.  Gene #1102: 'PROM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PROM1 MUTATED 3 3 4
PROM1 WILD-TYPE 59 70 71
'PROM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S11314.  Gene #1102: 'PROM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PROM1 MUTATED 0 5 5
PROM1 WILD-TYPE 70 115 95
'PROM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 0.75

Table S11315.  Gene #1102: 'PROM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PROM1 MUTATED 0 0 2 1 1 5 0 1 0
PROM1 WILD-TYPE 41 26 28 28 38 64 20 13 22
'PROM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S11316.  Gene #1102: 'PROM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PROM1 MUTATED 4 4 2 2
PROM1 WILD-TYPE 96 68 70 119
'PROM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S11317.  Gene #1102: 'PROM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PROM1 MUTATED 1 4 5 1 1
PROM1 WILD-TYPE 58 71 69 118 37
'PROM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.92

Table S11318.  Gene #1102: 'PROM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PROM1 MUTATED 2 4 3 1 2
PROM1 WILD-TYPE 49 72 58 70 93
'PROM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0326 (Fisher's exact test), Q value = 0.19

Table S11319.  Gene #1102: 'PROM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PROM1 MUTATED 3 1 0 3 2 2 0 1 0
PROM1 WILD-TYPE 66 47 39 13 51 18 21 37 50

Figure S3060.  Get High-res Image Gene #1102: 'PROM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TMCO6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S11320.  Gene #1103: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TMCO6 MUTATED 2 0 0 1 0
TMCO6 WILD-TYPE 30 18 46 26 23
'TMCO6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S11321.  Gene #1103: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TMCO6 MUTATED 2 1 0
TMCO6 WILD-TYPE 41 66 36
'TMCO6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S11322.  Gene #1103: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMCO6 MUTATED 1 1 5
TMCO6 WILD-TYPE 41 172 142
'TMCO6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S11323.  Gene #1103: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TMCO6 MUTATED 0 1 3
TMCO6 WILD-TYPE 62 72 72
'TMCO6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S11324.  Gene #1103: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TMCO6 MUTATED 0 3 2
TMCO6 WILD-TYPE 70 117 98
'TMCO6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S11325.  Gene #1103: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TMCO6 MUTATED 0 1 1 1 1 1 0 0 0
TMCO6 WILD-TYPE 41 25 29 28 38 68 20 14 22
'TMCO6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S11326.  Gene #1103: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMCO6 MUTATED 1 2 1 3
TMCO6 WILD-TYPE 99 70 71 118
'TMCO6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.72

Table S11327.  Gene #1103: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMCO6 MUTATED 0 1 2 2 2
TMCO6 WILD-TYPE 59 74 72 117 36
'TMCO6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S11328.  Gene #1103: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMCO6 MUTATED 0 2 1 1 3
TMCO6 WILD-TYPE 51 74 60 70 92
'TMCO6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0514 (Fisher's exact test), Q value = 0.24

Table S11329.  Gene #1103: 'TMCO6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMCO6 MUTATED 0 1 0 1 1 1 0 3 0
TMCO6 WILD-TYPE 69 47 39 15 52 19 21 35 50
'RAB38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S11330.  Gene #1104: 'RAB38 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RAB38 MUTATED 1 1 3
RAB38 WILD-TYPE 41 172 144
'RAB38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S11331.  Gene #1104: 'RAB38 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RAB38 MUTATED 0 2 2
RAB38 WILD-TYPE 62 71 73
'RAB38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S11332.  Gene #1104: 'RAB38 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RAB38 MUTATED 0 3 1
RAB38 WILD-TYPE 70 117 99
'RAB38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0823 (Fisher's exact test), Q value = 0.31

Table S11333.  Gene #1104: 'RAB38 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RAB38 MUTATED 0 0 0 3 0 1 0 0 0
RAB38 WILD-TYPE 41 26 30 26 39 68 20 14 22
'RAB38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.86

Table S11334.  Gene #1104: 'RAB38 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RAB38 MUTATED 2 2 0 1
RAB38 WILD-TYPE 98 70 72 120
'RAB38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S11335.  Gene #1104: 'RAB38 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RAB38 MUTATED 1 1 2 0 1
RAB38 WILD-TYPE 58 74 72 119 37
'RAB38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S11336.  Gene #1104: 'RAB38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RAB38 MUTATED 2 2 0 0 1
RAB38 WILD-TYPE 49 74 61 71 94
'RAB38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S11337.  Gene #1104: 'RAB38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RAB38 MUTATED 2 0 0 1 1 0 0 1 0
RAB38 WILD-TYPE 67 48 39 15 52 20 21 37 50
'LRMP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S11338.  Gene #1105: 'LRMP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LRMP MUTATED 0 2 3
LRMP WILD-TYPE 42 171 144
'LRMP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S11339.  Gene #1105: 'LRMP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LRMP MUTATED 2 1 0
LRMP WILD-TYPE 60 72 75
'LRMP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S11340.  Gene #1105: 'LRMP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LRMP MUTATED 0 1 3
LRMP WILD-TYPE 70 119 97
'LRMP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S11341.  Gene #1105: 'LRMP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LRMP MUTATED 1 0 0 1 0 1 0 0 1
LRMP WILD-TYPE 40 26 30 28 39 68 20 14 21
'LRMP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S11342.  Gene #1105: 'LRMP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LRMP MUTATED 2 0 1 2
LRMP WILD-TYPE 98 72 71 119
'LRMP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 0.21

Table S11343.  Gene #1105: 'LRMP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LRMP MUTATED 1 2 0 0 2
LRMP WILD-TYPE 58 73 74 119 36

Figure S3061.  Get High-res Image Gene #1105: 'LRMP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LRMP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S11344.  Gene #1105: 'LRMP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LRMP MUTATED 0 0 1 2 1
LRMP WILD-TYPE 51 76 60 69 94
'LRMP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 0.93

Table S11345.  Gene #1105: 'LRMP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LRMP MUTATED 1 1 1 0 0 0 1 0 0
LRMP WILD-TYPE 68 47 38 16 53 20 20 38 50
'NHLRC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S11346.  Gene #1106: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NHLRC2 MUTATED 0 3 6
NHLRC2 WILD-TYPE 42 170 141
'NHLRC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S11347.  Gene #1106: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NHLRC2 MUTATED 3 1 3
NHLRC2 WILD-TYPE 59 72 72
'NHLRC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.18

Table S11348.  Gene #1106: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NHLRC2 MUTATED 0 7 1
NHLRC2 WILD-TYPE 70 113 99

Figure S3062.  Get High-res Image Gene #1106: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NHLRC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00227 (Fisher's exact test), Q value = 0.04

Table S11349.  Gene #1106: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NHLRC2 MUTATED 0 3 3 0 0 0 1 1 0
NHLRC2 WILD-TYPE 41 23 27 29 39 69 19 13 22

Figure S3063.  Get High-res Image Gene #1106: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'NHLRC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S11350.  Gene #1106: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NHLRC2 MUTATED 1 4 1 3
NHLRC2 WILD-TYPE 99 68 71 118
'NHLRC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11351.  Gene #1106: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NHLRC2 MUTATED 1 2 2 3 1
NHLRC2 WILD-TYPE 58 73 72 116 37
'NHLRC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S11352.  Gene #1106: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NHLRC2 MUTATED 2 3 0 1 3
NHLRC2 WILD-TYPE 49 73 61 70 92
'NHLRC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0995 (Fisher's exact test), Q value = 0.34

Table S11353.  Gene #1106: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NHLRC2 MUTATED 0 1 0 2 2 1 0 2 1
NHLRC2 WILD-TYPE 69 47 39 14 51 19 21 36 49
'NHLRC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.56

Table S11354.  Gene #1106: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NHLRC2 MUTATED 1 0 0 1 2 0
NHLRC2 WILD-TYPE 12 16 14 10 9 9
'NHLRC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S11355.  Gene #1106: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NHLRC2 MUTATED 0 0 0 2 0 0 1 0 1
NHLRC2 WILD-TYPE 11 7 7 7 8 7 10 9 4
'DCBLD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S11356.  Gene #1107: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DCBLD1 MUTATED 0 2 3
DCBLD1 WILD-TYPE 42 171 144
'DCBLD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S11357.  Gene #1107: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DCBLD1 MUTATED 1 2 1
DCBLD1 WILD-TYPE 61 71 74
'DCBLD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.98

Table S11358.  Gene #1107: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DCBLD1 MUTATED 0 2 2
DCBLD1 WILD-TYPE 70 118 98
'DCBLD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S11359.  Gene #1107: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DCBLD1 MUTATED 1 1 0 0 1 1 0 0 0
DCBLD1 WILD-TYPE 40 25 30 29 38 68 20 14 22
'DCBLD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S11360.  Gene #1107: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DCBLD1 MUTATED 2 0 2 1
DCBLD1 WILD-TYPE 98 72 70 120
'DCBLD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.58

Table S11361.  Gene #1107: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DCBLD1 MUTATED 1 2 1 0 1
DCBLD1 WILD-TYPE 58 73 73 119 37
'DCBLD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S11362.  Gene #1107: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DCBLD1 MUTATED 1 2 1 0 1
DCBLD1 WILD-TYPE 50 74 60 71 94
'DCBLD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S11363.  Gene #1107: 'DCBLD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DCBLD1 MUTATED 2 1 1 0 0 0 0 1 0
DCBLD1 WILD-TYPE 67 47 38 16 53 20 21 37 50
'JAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S11364.  Gene #1108: 'JAK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
JAK1 MUTATED 0 1 17
JAK1 WILD-TYPE 42 172 130

Figure S3064.  Get High-res Image Gene #1108: 'JAK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'JAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00141 (Fisher's exact test), Q value = 0.031

Table S11365.  Gene #1108: 'JAK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
JAK1 MUTATED 9 0 6
JAK1 WILD-TYPE 53 73 69

Figure S3065.  Get High-res Image Gene #1108: 'JAK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'JAK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.17

Table S11366.  Gene #1108: 'JAK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
JAK1 MUTATED 2 2 9
JAK1 WILD-TYPE 68 118 91

Figure S3066.  Get High-res Image Gene #1108: 'JAK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'JAK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.62

Table S11367.  Gene #1108: 'JAK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
JAK1 MUTATED 1 1 0 1 1 8 1 0 0
JAK1 WILD-TYPE 40 25 30 28 38 61 19 14 22
'JAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00056 (Fisher's exact test), Q value = 0.017

Table S11368.  Gene #1108: 'JAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
JAK1 MUTATED 1 6 9 2
JAK1 WILD-TYPE 99 66 63 119

Figure S3067.  Get High-res Image Gene #1108: 'JAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'JAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S11369.  Gene #1108: 'JAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
JAK1 MUTATED 2 1 13 0 2
JAK1 WILD-TYPE 57 74 61 119 36

Figure S3068.  Get High-res Image Gene #1108: 'JAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'JAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00057 (Fisher's exact test), Q value = 0.017

Table S11370.  Gene #1108: 'JAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
JAK1 MUTATED 0 10 5 0 3
JAK1 WILD-TYPE 51 66 56 71 92

Figure S3069.  Get High-res Image Gene #1108: 'JAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'JAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0695 (Fisher's exact test), Q value = 0.28

Table S11371.  Gene #1108: 'JAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
JAK1 MUTATED 5 4 0 3 3 0 1 2 0
JAK1 WILD-TYPE 64 44 39 13 50 20 20 36 50
'JAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.89

Table S11372.  Gene #1108: 'JAK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
JAK1 MUTATED 0 2 2 0 1 0
JAK1 WILD-TYPE 13 14 12 11 10 9
'JAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S11373.  Gene #1108: 'JAK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
JAK1 MUTATED 1 1 0 0 1 1 1 0 0
JAK1 WILD-TYPE 10 6 7 9 7 6 10 9 5
'PAK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S11374.  Gene #1109: 'PAK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PAK4 MUTATED 0 1 5
PAK4 WILD-TYPE 42 172 142
'PAK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S11375.  Gene #1109: 'PAK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PAK4 MUTATED 3 1 2
PAK4 WILD-TYPE 59 72 73
'PAK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S11376.  Gene #1109: 'PAK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PAK4 MUTATED 1 1 4
PAK4 WILD-TYPE 69 119 96
'PAK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S11377.  Gene #1109: 'PAK4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PAK4 MUTATED 0 0 1 0 0 5 0 0 0
PAK4 WILD-TYPE 41 26 29 29 39 64 20 14 22
'PAK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00496 (Fisher's exact test), Q value = 0.066

Table S11378.  Gene #1109: 'PAK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PAK4 MUTATED 0 4 2 0
PAK4 WILD-TYPE 100 68 70 121

Figure S3070.  Get High-res Image Gene #1109: 'PAK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PAK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0053 (Fisher's exact test), Q value = 0.069

Table S11379.  Gene #1109: 'PAK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PAK4 MUTATED 0 1 5 0 0
PAK4 WILD-TYPE 59 74 69 119 38

Figure S3071.  Get High-res Image Gene #1109: 'PAK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PAK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00382 (Fisher's exact test), Q value = 0.055

Table S11380.  Gene #1109: 'PAK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PAK4 MUTATED 1 5 0 0 0
PAK4 WILD-TYPE 50 71 61 71 95

Figure S3072.  Get High-res Image Gene #1109: 'PAK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PAK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00143 (Fisher's exact test), Q value = 0.031

Table S11381.  Gene #1109: 'PAK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PAK4 MUTATED 2 0 0 3 0 1 0 0 0
PAK4 WILD-TYPE 67 48 39 13 53 19 21 38 50

Figure S3073.  Get High-res Image Gene #1109: 'PAK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SNX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11382.  Gene #1110: 'SNX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SNX2 MUTATED 1 0 1 1 1
SNX2 WILD-TYPE 31 18 45 26 22
'SNX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11383.  Gene #1110: 'SNX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SNX2 MUTATED 1 2 1
SNX2 WILD-TYPE 42 65 35
'SNX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.3

Table S11384.  Gene #1110: 'SNX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SNX2 MUTATED 1 2 8
SNX2 WILD-TYPE 41 171 139
'SNX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.19

Table S11385.  Gene #1110: 'SNX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SNX2 MUTATED 5 0 2
SNX2 WILD-TYPE 57 73 73

Figure S3074.  Get High-res Image Gene #1110: 'SNX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SNX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S11386.  Gene #1110: 'SNX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SNX2 MUTATED 0 6 5
SNX2 WILD-TYPE 70 114 95
'SNX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S11387.  Gene #1110: 'SNX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SNX2 MUTATED 1 1 1 1 2 3 2 0 0
SNX2 WILD-TYPE 40 25 29 28 37 66 18 14 22
'SNX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S11388.  Gene #1110: 'SNX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SNX2 MUTATED 1 2 4 4
SNX2 WILD-TYPE 99 70 68 117
'SNX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S11389.  Gene #1110: 'SNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SNX2 MUTATED 1 0 5 4 1
SNX2 WILD-TYPE 58 75 69 115 37
'SNX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S11390.  Gene #1110: 'SNX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SNX2 MUTATED 0 5 1 2 3
SNX2 WILD-TYPE 51 71 60 69 92
'SNX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S11391.  Gene #1110: 'SNX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SNX2 MUTATED 2 2 0 2 1 2 0 0 2
SNX2 WILD-TYPE 67 46 39 14 52 18 21 38 48
'LIMCH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.092 (Fisher's exact test), Q value = 0.33

Table S11392.  Gene #1111: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LIMCH1 MUTATED 4 1 1 0 0
LIMCH1 WILD-TYPE 28 17 45 27 23
'LIMCH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S11393.  Gene #1111: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LIMCH1 MUTATED 5 1 0
LIMCH1 WILD-TYPE 38 66 36

Figure S3075.  Get High-res Image Gene #1111: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LIMCH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00297 (Fisher's exact test), Q value = 0.047

Table S11394.  Gene #1111: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LIMCH1 MUTATED 0 1 10
LIMCH1 WILD-TYPE 42 172 137

Figure S3076.  Get High-res Image Gene #1111: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LIMCH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0818 (Fisher's exact test), Q value = 0.31

Table S11395.  Gene #1111: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LIMCH1 MUTATED 4 0 3
LIMCH1 WILD-TYPE 58 73 72
'LIMCH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00353 (Fisher's exact test), Q value = 0.053

Table S11396.  Gene #1111: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LIMCH1 MUTATED 2 1 10
LIMCH1 WILD-TYPE 68 119 90

Figure S3077.  Get High-res Image Gene #1111: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LIMCH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0488 (Fisher's exact test), Q value = 0.24

Table S11397.  Gene #1111: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LIMCH1 MUTATED 2 1 0 0 0 7 3 0 0
LIMCH1 WILD-TYPE 39 25 30 29 39 62 17 14 22

Figure S3078.  Get High-res Image Gene #1111: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'LIMCH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S11398.  Gene #1111: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LIMCH1 MUTATED 1 5 2 5
LIMCH1 WILD-TYPE 99 67 70 116
'LIMCH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.92

Table S11399.  Gene #1111: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LIMCH1 MUTATED 1 2 3 4 3
LIMCH1 WILD-TYPE 58 73 71 115 35
'LIMCH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S11400.  Gene #1111: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LIMCH1 MUTATED 0 3 3 0 5
LIMCH1 WILD-TYPE 51 73 58 71 90
'LIMCH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S11401.  Gene #1111: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LIMCH1 MUTATED 0 2 1 2 1 0 2 1 2
LIMCH1 WILD-TYPE 69 46 38 14 52 20 19 37 48
'CD34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.91

Table S11402.  Gene #1112: 'CD34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CD34 MUTATED 1 2 3
CD34 WILD-TYPE 41 171 144
'CD34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S11403.  Gene #1112: 'CD34 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CD34 MUTATED 3 0 2
CD34 WILD-TYPE 59 73 73
'CD34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.62

Table S11404.  Gene #1112: 'CD34 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CD34 MUTATED 0 1 3
CD34 WILD-TYPE 70 119 97
'CD34 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S11405.  Gene #1112: 'CD34 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CD34 MUTATED 1 0 0 1 1 1 0 0 0
CD34 WILD-TYPE 40 26 30 28 38 68 20 14 22
'CD34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S11406.  Gene #1112: 'CD34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CD34 MUTATED 1 2 2 1
CD34 WILD-TYPE 99 70 70 120
'CD34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S11407.  Gene #1112: 'CD34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CD34 MUTATED 2 2 1 0 1
CD34 WILD-TYPE 57 73 73 119 37
'CD34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.49

Table S11408.  Gene #1112: 'CD34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CD34 MUTATED 2 0 2 0 2
CD34 WILD-TYPE 49 76 59 71 93
'CD34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S11409.  Gene #1112: 'CD34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CD34 MUTATED 1 1 0 0 1 1 0 1 1
CD34 WILD-TYPE 68 47 39 16 52 19 21 37 49
'KIAA0564 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.17

Table S11410.  Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIAA0564 MUTATED 4 0 0 2 0
KIAA0564 WILD-TYPE 28 18 46 25 23

Figure S3079.  Get High-res Image Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIAA0564 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S11411.  Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIAA0564 MUTATED 4 1 1
KIAA0564 WILD-TYPE 39 66 35
'KIAA0564 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S11412.  Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA0564 MUTATED 0 3 19
KIAA0564 WILD-TYPE 42 170 128

Figure S3080.  Get High-res Image Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0564 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S11413.  Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA0564 MUTATED 5 2 9
KIAA0564 WILD-TYPE 57 71 66
'KIAA0564 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 0.25

Table S11414.  Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA0564 MUTATED 2 6 12
KIAA0564 WILD-TYPE 68 114 88
'KIAA0564 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S11415.  Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA0564 MUTATED 1 1 1 1 1 11 2 0 2
KIAA0564 WILD-TYPE 40 25 29 28 38 58 18 14 20
'KIAA0564 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S11416.  Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA0564 MUTATED 2 10 5 5
KIAA0564 WILD-TYPE 98 62 67 116

Figure S3081.  Get High-res Image Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIAA0564 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00242 (Fisher's exact test), Q value = 0.042

Table S11417.  Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA0564 MUTATED 2 3 11 2 4
KIAA0564 WILD-TYPE 57 72 63 117 34

Figure S3082.  Get High-res Image Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA0564 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0426 (Fisher's exact test), Q value = 0.22

Table S11418.  Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA0564 MUTATED 2 10 2 1 6
KIAA0564 WILD-TYPE 49 66 59 70 89

Figure S3083.  Get High-res Image Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIAA0564 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00492 (Fisher's exact test), Q value = 0.065

Table S11419.  Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA0564 MUTATED 3 2 0 5 4 2 0 4 1
KIAA0564 WILD-TYPE 66 46 39 11 49 18 21 34 49

Figure S3084.  Get High-res Image Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA0564 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00094 (Fisher's exact test), Q value = 0.024

Table S11420.  Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIAA0564 MUTATED 0 0 1 0 5 1
KIAA0564 WILD-TYPE 13 16 13 11 6 8

Figure S3085.  Get High-res Image Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KIAA0564 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S11421.  Gene #1113: 'KIAA0564 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIAA0564 MUTATED 1 0 0 3 0 1 2 0 0
KIAA0564 WILD-TYPE 10 7 7 6 8 6 9 9 5
'CEACAM6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0957 (Fisher's exact test), Q value = 0.34

Table S11422.  Gene #1114: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CEACAM6 MUTATED 1 0 3
CEACAM6 WILD-TYPE 41 173 144
'CEACAM6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S11423.  Gene #1114: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CEACAM6 MUTATED 1 0 3
CEACAM6 WILD-TYPE 61 73 72
'CEACAM6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11424.  Gene #1114: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CEACAM6 MUTATED 1 1 1
CEACAM6 WILD-TYPE 69 119 99
'CEACAM6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0361 (Fisher's exact test), Q value = 0.2

Table S11425.  Gene #1114: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CEACAM6 MUTATED 1 0 0 0 0 0 2 0 0
CEACAM6 WILD-TYPE 40 26 30 29 39 69 18 14 22

Figure S3086.  Get High-res Image Gene #1114: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CEACAM6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S11426.  Gene #1114: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CEACAM6 MUTATED 1 2 1 0
CEACAM6 WILD-TYPE 99 70 71 121
'CEACAM6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S11427.  Gene #1114: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CEACAM6 MUTATED 0 2 2 0 0
CEACAM6 WILD-TYPE 59 73 72 119 38
'CEACAM6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0608 (Fisher's exact test), Q value = 0.26

Table S11428.  Gene #1114: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CEACAM6 MUTATED 1 3 0 0 0
CEACAM6 WILD-TYPE 50 73 61 71 95
'CEACAM6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.54

Table S11429.  Gene #1114: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CEACAM6 MUTATED 1 0 0 1 1 1 0 0 0
CEACAM6 WILD-TYPE 68 48 39 15 52 19 21 38 50
'CASP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S11430.  Gene #1115: 'CASP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CASP4 MUTATED 0 3 5
CASP4 WILD-TYPE 42 170 142
'CASP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.73

Table S11431.  Gene #1115: 'CASP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CASP4 MUTATED 2 1 4
CASP4 WILD-TYPE 60 72 71
'CASP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S11432.  Gene #1115: 'CASP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CASP4 MUTATED 1 4 2
CASP4 WILD-TYPE 69 116 98
'CASP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S11433.  Gene #1115: 'CASP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CASP4 MUTATED 1 0 1 1 1 1 1 0 1
CASP4 WILD-TYPE 40 26 29 28 38 68 19 14 21
'CASP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.49

Table S11434.  Gene #1115: 'CASP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CASP4 MUTATED 1 3 3 1
CASP4 WILD-TYPE 99 69 69 120
'CASP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S11435.  Gene #1115: 'CASP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CASP4 MUTATED 2 2 3 1 0
CASP4 WILD-TYPE 57 73 71 118 38
'CASP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S11436.  Gene #1115: 'CASP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CASP4 MUTATED 1 4 2 1 0
CASP4 WILD-TYPE 50 72 59 70 95
'CASP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S11437.  Gene #1115: 'CASP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CASP4 MUTATED 2 2 0 1 2 0 0 0 1
CASP4 WILD-TYPE 67 46 39 15 51 20 21 38 49
'AKAP11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00879 (Fisher's exact test), Q value = 0.088

Table S11438.  Gene #1116: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AKAP11 MUTATED 5 0 0 2 0
AKAP11 WILD-TYPE 27 18 46 25 23

Figure S3087.  Get High-res Image Gene #1116: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AKAP11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S11439.  Gene #1116: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AKAP11 MUTATED 4 2 1
AKAP11 WILD-TYPE 39 65 35
'AKAP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0562 (Fisher's exact test), Q value = 0.25

Table S11440.  Gene #1116: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AKAP11 MUTATED 3 5 13
AKAP11 WILD-TYPE 39 168 134
'AKAP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S11441.  Gene #1116: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AKAP11 MUTATED 7 2 7
AKAP11 WILD-TYPE 55 71 68
'AKAP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S11442.  Gene #1116: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AKAP11 MUTATED 2 5 9
AKAP11 WILD-TYPE 68 115 91
'AKAP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S11443.  Gene #1116: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AKAP11 MUTATED 2 0 2 1 2 7 1 0 1
AKAP11 WILD-TYPE 39 26 28 28 37 62 19 14 21
'AKAP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S11444.  Gene #1116: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AKAP11 MUTATED 4 5 7 6
AKAP11 WILD-TYPE 96 67 65 115
'AKAP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S11445.  Gene #1116: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AKAP11 MUTATED 5 3 7 3 4
AKAP11 WILD-TYPE 54 72 67 116 34
'AKAP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S11446.  Gene #1116: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AKAP11 MUTATED 3 7 5 1 4
AKAP11 WILD-TYPE 48 69 56 70 91
'AKAP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0774 (Fisher's exact test), Q value = 0.3

Table S11447.  Gene #1116: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AKAP11 MUTATED 3 4 1 3 5 2 0 2 0
AKAP11 WILD-TYPE 66 44 38 13 48 18 21 36 50
'AKAP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S11448.  Gene #1116: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AKAP11 MUTATED 1 0 0 0 2 1
AKAP11 WILD-TYPE 12 16 14 11 9 8
'AKAP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S11449.  Gene #1116: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AKAP11 MUTATED 1 0 0 1 0 0 2 0 0
AKAP11 WILD-TYPE 10 7 7 8 8 7 9 9 5
'OSMR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S11450.  Gene #1117: 'OSMR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OSMR MUTATED 0 0 1 3 0
OSMR WILD-TYPE 32 18 45 24 23
'OSMR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S11451.  Gene #1117: 'OSMR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OSMR MUTATED 2 2 0
OSMR WILD-TYPE 41 65 36
'OSMR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.16

Table S11452.  Gene #1117: 'OSMR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OSMR MUTATED 3 4 13
OSMR WILD-TYPE 39 169 134

Figure S3088.  Get High-res Image Gene #1117: 'OSMR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OSMR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.17

Table S11453.  Gene #1117: 'OSMR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OSMR MUTATED 6 1 9
OSMR WILD-TYPE 56 72 66

Figure S3089.  Get High-res Image Gene #1117: 'OSMR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'OSMR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S11454.  Gene #1117: 'OSMR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OSMR MUTATED 2 8 9
OSMR WILD-TYPE 68 112 91
'OSMR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S11455.  Gene #1117: 'OSMR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OSMR MUTATED 4 1 0 2 3 6 3 0 0
OSMR WILD-TYPE 37 25 30 27 36 63 17 14 22
'OSMR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.33

Table S11456.  Gene #1117: 'OSMR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OSMR MUTATED 2 7 6 5
OSMR WILD-TYPE 98 65 66 116
'OSMR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0258 (Fisher's exact test), Q value = 0.17

Table S11457.  Gene #1117: 'OSMR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OSMR MUTATED 3 2 10 3 2
OSMR WILD-TYPE 56 73 64 116 36

Figure S3090.  Get High-res Image Gene #1117: 'OSMR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OSMR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.45

Table S11458.  Gene #1117: 'OSMR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OSMR MUTATED 2 8 4 1 4
OSMR WILD-TYPE 49 68 57 70 91
'OSMR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.84

Table S11459.  Gene #1117: 'OSMR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OSMR MUTATED 2 5 1 2 3 0 1 3 2
OSMR WILD-TYPE 67 43 38 14 50 20 20 35 48
'OSMR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S11460.  Gene #1117: 'OSMR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OSMR MUTATED 0 1 0 2 2 0
OSMR WILD-TYPE 13 15 14 9 9 9
'OSMR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S11461.  Gene #1117: 'OSMR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OSMR MUTATED 0 0 1 0 0 2 2 0 0
OSMR WILD-TYPE 11 7 6 9 8 5 9 9 5
'HDAC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S11462.  Gene #1118: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HDAC5 MUTATED 1 3 7
HDAC5 WILD-TYPE 41 170 140
'HDAC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S11463.  Gene #1118: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HDAC5 MUTATED 5 1 4
HDAC5 WILD-TYPE 57 72 71
'HDAC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S11464.  Gene #1118: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HDAC5 MUTATED 1 3 6
HDAC5 WILD-TYPE 69 117 94
'HDAC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S11465.  Gene #1118: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HDAC5 MUTATED 1 0 1 2 1 5 0 0 0
HDAC5 WILD-TYPE 40 26 29 27 38 64 20 14 22
'HDAC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 0.3

Table S11466.  Gene #1118: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HDAC5 MUTATED 2 3 5 1
HDAC5 WILD-TYPE 98 69 67 120
'HDAC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00336 (Fisher's exact test), Q value = 0.051

Table S11467.  Gene #1118: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HDAC5 MUTATED 2 1 7 0 1
HDAC5 WILD-TYPE 57 74 67 119 37

Figure S3091.  Get High-res Image Gene #1118: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HDAC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S11468.  Gene #1118: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HDAC5 MUTATED 1 5 3 0 2
HDAC5 WILD-TYPE 50 71 58 71 93
'HDAC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0786 (Fisher's exact test), Q value = 0.3

Table S11469.  Gene #1118: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HDAC5 MUTATED 2 5 1 1 0 0 0 2 0
HDAC5 WILD-TYPE 67 43 38 15 53 20 21 36 50
'HDAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0555 (Fisher's exact test), Q value = 0.25

Table S11470.  Gene #1118: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HDAC5 MUTATED 0 1 0 0 3 1
HDAC5 WILD-TYPE 13 15 14 11 8 8
'HDAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.94

Table S11471.  Gene #1118: 'HDAC5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HDAC5 MUTATED 2 0 0 1 0 0 2 0 0
HDAC5 WILD-TYPE 9 7 7 8 8 7 9 9 5
'NCR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 0.27

Table S11472.  Gene #1119: 'NCR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NCR3 MUTATED 1 0 4
NCR3 WILD-TYPE 41 173 143
'NCR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.2

Table S11473.  Gene #1119: 'NCR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NCR3 MUTATED 0 0 4
NCR3 WILD-TYPE 62 73 71

Figure S3092.  Get High-res Image Gene #1119: 'NCR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NCR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0868 (Fisher's exact test), Q value = 0.32

Table S11474.  Gene #1119: 'NCR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NCR3 MUTATED 0 4 0
NCR3 WILD-TYPE 70 116 100
'NCR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.18

Table S11475.  Gene #1119: 'NCR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NCR3 MUTATED 0 0 0 3 1 0 0 0 0
NCR3 WILD-TYPE 41 26 30 26 38 69 20 14 22

Figure S3093.  Get High-res Image Gene #1119: 'NCR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'NCR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S11476.  Gene #1119: 'NCR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NCR3 MUTATED 0 4 0 1
NCR3 WILD-TYPE 100 68 72 120

Figure S3094.  Get High-res Image Gene #1119: 'NCR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NCR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00662 (Fisher's exact test), Q value = 0.076

Table S11477.  Gene #1119: 'NCR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NCR3 MUTATED 0 0 4 0 1
NCR3 WILD-TYPE 59 75 70 119 37

Figure S3095.  Get High-res Image Gene #1119: 'NCR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NCR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.23

Table S11478.  Gene #1119: 'NCR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NCR3 MUTATED 0 4 0 0 1
NCR3 WILD-TYPE 51 72 61 71 94

Figure S3096.  Get High-res Image Gene #1119: 'NCR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NCR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00127 (Fisher's exact test), Q value = 0.029

Table S11479.  Gene #1119: 'NCR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NCR3 MUTATED 0 0 0 3 1 0 0 1 0
NCR3 WILD-TYPE 69 48 39 13 52 20 21 37 50

Figure S3097.  Get High-res Image Gene #1119: 'NCR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ORC4L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S11480.  Gene #1120: 'ORC4L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ORC4L MUTATED 1 0 0 2 0
ORC4L WILD-TYPE 31 18 46 25 23
'ORC4L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.79

Table S11481.  Gene #1120: 'ORC4L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ORC4L MUTATED 2 1 0
ORC4L WILD-TYPE 41 66 36
'ORC4L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S11482.  Gene #1120: 'ORC4L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ORC4L MUTATED 0 1 5
ORC4L WILD-TYPE 42 172 142
'ORC4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S11483.  Gene #1120: 'ORC4L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ORC4L MUTATED 1 0 2
ORC4L WILD-TYPE 61 73 73
'ORC4L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S11484.  Gene #1120: 'ORC4L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ORC4L MUTATED 1 2 3
ORC4L WILD-TYPE 69 118 97
'ORC4L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S11485.  Gene #1120: 'ORC4L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ORC4L MUTATED 1 0 1 1 0 3 0 0 0
ORC4L WILD-TYPE 40 26 29 28 39 66 20 14 22
'ORC4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.75

Table S11486.  Gene #1120: 'ORC4L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ORC4L MUTATED 0 2 1 3
ORC4L WILD-TYPE 100 70 71 118
'ORC4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0582 (Fisher's exact test), Q value = 0.26

Table S11487.  Gene #1120: 'ORC4L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ORC4L MUTATED 0 0 3 1 2
ORC4L WILD-TYPE 59 75 71 118 36
'ORC4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S11488.  Gene #1120: 'ORC4L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ORC4L MUTATED 1 2 0 0 2
ORC4L WILD-TYPE 50 74 61 71 93
'ORC4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.09 (Fisher's exact test), Q value = 0.33

Table S11489.  Gene #1120: 'ORC4L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ORC4L MUTATED 2 0 0 0 0 2 0 1 0
ORC4L WILD-TYPE 67 48 39 16 53 18 21 37 50
'SECISBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.95

Table S11490.  Gene #1121: 'SECISBP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SECISBP2 MUTATED 0 3 4
SECISBP2 WILD-TYPE 42 170 143
'SECISBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S11491.  Gene #1121: 'SECISBP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SECISBP2 MUTATED 2 1 2
SECISBP2 WILD-TYPE 60 72 73
'SECISBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S11492.  Gene #1121: 'SECISBP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SECISBP2 MUTATED 1 1 4
SECISBP2 WILD-TYPE 69 119 96
'SECISBP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 0.96

Table S11493.  Gene #1121: 'SECISBP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SECISBP2 MUTATED 1 0 2 0 0 3 0 0 0
SECISBP2 WILD-TYPE 40 26 28 29 39 66 20 14 22
'SECISBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S11494.  Gene #1121: 'SECISBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SECISBP2 MUTATED 2 1 2 2
SECISBP2 WILD-TYPE 98 71 70 119
'SECISBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 0.95

Table S11495.  Gene #1121: 'SECISBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SECISBP2 MUTATED 2 2 1 1 1
SECISBP2 WILD-TYPE 57 73 73 118 37
'SECISBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S11496.  Gene #1121: 'SECISBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SECISBP2 MUTATED 0 3 2 0 2
SECISBP2 WILD-TYPE 51 73 59 71 93
'SECISBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 0.99

Table S11497.  Gene #1121: 'SECISBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SECISBP2 MUTATED 2 1 0 1 2 0 0 1 0
SECISBP2 WILD-TYPE 67 47 39 15 51 20 21 37 50
'OR51T1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S11498.  Gene #1122: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR51T1 MUTATED 2 2 6
OR51T1 WILD-TYPE 40 171 141
'OR51T1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11499.  Gene #1122: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR51T1 MUTATED 3 3 3
OR51T1 WILD-TYPE 59 70 72
'OR51T1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.61

Table S11500.  Gene #1122: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR51T1 MUTATED 1 3 6
OR51T1 WILD-TYPE 69 117 94
'OR51T1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S11501.  Gene #1122: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR51T1 MUTATED 0 1 0 1 1 5 1 0 1
OR51T1 WILD-TYPE 41 25 30 28 38 64 19 14 21
'OR51T1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.95

Table S11502.  Gene #1122: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR51T1 MUTATED 3 3 3 2
OR51T1 WILD-TYPE 97 69 69 119
'OR51T1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0463 (Fisher's exact test), Q value = 0.23

Table S11503.  Gene #1122: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR51T1 MUTATED 0 5 4 1 1
OR51T1 WILD-TYPE 59 70 70 118 37

Figure S3098.  Get High-res Image Gene #1122: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR51T1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S11504.  Gene #1122: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR51T1 MUTATED 2 4 1 2 2
OR51T1 WILD-TYPE 49 72 60 69 93
'OR51T1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 0.8

Table S11505.  Gene #1122: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR51T1 MUTATED 2 2 0 2 3 0 0 1 1
OR51T1 WILD-TYPE 67 46 39 14 50 20 21 37 49
'OR51T1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S11506.  Gene #1122: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR51T1 MUTATED 0 1 1 0 1 0
OR51T1 WILD-TYPE 13 15 13 11 10 9
'OR51T1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S11507.  Gene #1122: 'OR51T1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR51T1 MUTATED 1 0 0 1 0 1 0 0 0
OR51T1 WILD-TYPE 10 7 7 8 8 6 11 9 5
'SNAPC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S11508.  Gene #1123: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SNAPC2 MUTATED 0 0 6
SNAPC2 WILD-TYPE 42 173 141

Figure S3099.  Get High-res Image Gene #1123: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SNAPC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 0.2

Table S11509.  Gene #1123: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SNAPC2 MUTATED 0 0 4
SNAPC2 WILD-TYPE 62 73 71

Figure S3100.  Get High-res Image Gene #1123: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SNAPC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11510.  Gene #1123: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SNAPC2 MUTATED 1 1 1
SNAPC2 WILD-TYPE 69 119 99
'SNAPC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S11511.  Gene #1123: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SNAPC2 MUTATED 0 1 0 0 1 1 0 0 0
SNAPC2 WILD-TYPE 41 25 30 29 38 68 20 14 22
'SNAPC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.16

Table S11512.  Gene #1123: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SNAPC2 MUTATED 0 4 0 2
SNAPC2 WILD-TYPE 100 68 72 119

Figure S3101.  Get High-res Image Gene #1123: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SNAPC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00309 (Fisher's exact test), Q value = 0.048

Table S11513.  Gene #1123: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SNAPC2 MUTATED 0 0 4 0 2
SNAPC2 WILD-TYPE 59 75 70 119 36

Figure S3102.  Get High-res Image Gene #1123: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0888 (Fisher's exact test), Q value = 0.32

Table S11514.  Gene #1123: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SNAPC2 MUTATED 0 4 0 0 2
SNAPC2 WILD-TYPE 51 72 61 71 93
'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00151 (Fisher's exact test), Q value = 0.032

Table S11515.  Gene #1123: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SNAPC2 MUTATED 1 0 0 3 0 0 0 2 0
SNAPC2 WILD-TYPE 68 48 39 13 53 20 21 36 50

Figure S3103.  Get High-res Image Gene #1123: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ABHD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S11516.  Gene #1124: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ABHD2 MUTATED 2 0 0 1 0
ABHD2 WILD-TYPE 30 18 46 26 23
'ABHD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0399 (Fisher's exact test), Q value = 0.21

Table S11517.  Gene #1124: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ABHD2 MUTATED 3 0 0
ABHD2 WILD-TYPE 40 67 36

Figure S3104.  Get High-res Image Gene #1124: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ABHD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S11518.  Gene #1124: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ABHD2 MUTATED 1 2 7
ABHD2 WILD-TYPE 41 171 140
'ABHD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S11519.  Gene #1124: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ABHD2 MUTATED 3 2 2
ABHD2 WILD-TYPE 59 71 73
'ABHD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S11520.  Gene #1124: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ABHD2 MUTATED 1 4 2
ABHD2 WILD-TYPE 69 116 98
'ABHD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S11521.  Gene #1124: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ABHD2 MUTATED 1 2 0 1 1 2 0 0 0
ABHD2 WILD-TYPE 40 24 30 28 38 67 20 14 22
'ABHD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11522.  Gene #1124: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ABHD2 MUTATED 3 2 2 3
ABHD2 WILD-TYPE 97 70 70 118
'ABHD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S11523.  Gene #1124: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ABHD2 MUTATED 1 2 3 1 3
ABHD2 WILD-TYPE 58 73 71 118 35
'ABHD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S11524.  Gene #1124: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ABHD2 MUTATED 2 3 1 0 3
ABHD2 WILD-TYPE 49 73 60 71 92
'ABHD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S11525.  Gene #1124: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ABHD2 MUTATED 1 1 0 1 2 1 0 3 0
ABHD2 WILD-TYPE 68 47 39 15 51 19 21 35 50
'ABHD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.56

Table S11526.  Gene #1124: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ABHD2 MUTATED 0 0 2 0 1 0
ABHD2 WILD-TYPE 13 16 12 11 10 9
'ABHD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S11527.  Gene #1124: 'ABHD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ABHD2 MUTATED 0 0 0 1 1 0 1 0 0
ABHD2 WILD-TYPE 11 7 7 8 7 7 10 9 5
'RNF38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S11528.  Gene #1125: 'RNF38 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RNF38 MUTATED 0 1 4
RNF38 WILD-TYPE 42 172 143
'RNF38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S11529.  Gene #1125: 'RNF38 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RNF38 MUTATED 1 0 2
RNF38 WILD-TYPE 61 73 73
'RNF38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11530.  Gene #1125: 'RNF38 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RNF38 MUTATED 1 2 1
RNF38 WILD-TYPE 69 118 99
'RNF38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S11531.  Gene #1125: 'RNF38 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RNF38 MUTATED 0 0 1 1 0 1 1 0 0
RNF38 WILD-TYPE 41 26 29 28 39 68 19 14 22
'RNF38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S11532.  Gene #1125: 'RNF38 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RNF38 MUTATED 0 1 2 2
RNF38 WILD-TYPE 100 71 70 119
'RNF38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S11533.  Gene #1125: 'RNF38 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RNF38 MUTATED 0 0 3 2 0
RNF38 WILD-TYPE 59 75 71 117 38
'RNF38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S11534.  Gene #1125: 'RNF38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RNF38 MUTATED 0 3 0 1 1
RNF38 WILD-TYPE 51 73 61 70 94
'RNF38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.56

Table S11535.  Gene #1125: 'RNF38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RNF38 MUTATED 2 0 0 1 0 1 0 0 1
RNF38 WILD-TYPE 67 48 39 15 53 19 21 38 49
'FGD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S11536.  Gene #1126: 'FGD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FGD4 MUTATED 0 2 3
FGD4 WILD-TYPE 42 171 144
'FGD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S11537.  Gene #1126: 'FGD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FGD4 MUTATED 1 2 1
FGD4 WILD-TYPE 61 71 74
'FGD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S11538.  Gene #1126: 'FGD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FGD4 MUTATED 0 1 3
FGD4 WILD-TYPE 70 119 97
'FGD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.92

Table S11539.  Gene #1126: 'FGD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FGD4 MUTATED 0 1 0 0 0 3 0 0 0
FGD4 WILD-TYPE 41 25 30 29 39 66 20 14 22
'FGD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S11540.  Gene #1126: 'FGD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FGD4 MUTATED 2 1 1 1
FGD4 WILD-TYPE 98 71 71 120
'FGD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S11541.  Gene #1126: 'FGD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FGD4 MUTATED 0 2 1 2 0
FGD4 WILD-TYPE 59 73 73 117 38
'FGD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S11542.  Gene #1126: 'FGD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FGD4 MUTATED 0 1 1 2 1
FGD4 WILD-TYPE 51 75 60 69 94
'FGD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S11543.  Gene #1126: 'FGD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FGD4 MUTATED 1 1 1 0 1 0 0 1 0
FGD4 WILD-TYPE 68 47 38 16 52 20 21 37 50
'IRS4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S11544.  Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IRS4 MUTATED 6 0 1 2 0
IRS4 WILD-TYPE 26 18 45 25 23

Figure S3105.  Get High-res Image Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'IRS4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00592 (Fisher's exact test), Q value = 0.073

Table S11545.  Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IRS4 MUTATED 7 2 0
IRS4 WILD-TYPE 36 65 36

Figure S3106.  Get High-res Image Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.013

Table S11546.  Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IRS4 MUTATED 3 4 20
IRS4 WILD-TYPE 39 169 127

Figure S3107.  Get High-res Image Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IRS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 0.26

Table S11547.  Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IRS4 MUTATED 5 2 10
IRS4 WILD-TYPE 57 71 65
'IRS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S11548.  Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IRS4 MUTATED 3 12 9
IRS4 WILD-TYPE 67 108 91
'IRS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S11549.  Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IRS4 MUTATED 0 2 2 6 4 7 2 0 1
IRS4 WILD-TYPE 41 24 28 23 35 62 18 14 21
'IRS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.15

Table S11550.  Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IRS4 MUTATED 4 11 2 10
IRS4 WILD-TYPE 96 61 70 111

Figure S3108.  Get High-res Image Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IRS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.011

Table S11551.  Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IRS4 MUTATED 2 3 11 3 8
IRS4 WILD-TYPE 57 72 63 116 30

Figure S3109.  Get High-res Image Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00944 (Fisher's exact test), Q value = 0.091

Table S11552.  Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IRS4 MUTATED 2 12 1 2 7
IRS4 WILD-TYPE 49 64 60 69 88

Figure S3110.  Get High-res Image Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IRS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00934 (Fisher's exact test), Q value = 0.091

Table S11553.  Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IRS4 MUTATED 4 3 1 6 3 0 0 4 3
IRS4 WILD-TYPE 65 45 38 10 50 20 21 34 47

Figure S3111.  Get High-res Image Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S11554.  Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IRS4 MUTATED 1 1 0 0 3 0
IRS4 WILD-TYPE 12 15 14 11 8 9
'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S11555.  Gene #1127: 'IRS4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IRS4 MUTATED 0 1 0 2 0 0 1 0 1
IRS4 WILD-TYPE 11 6 7 7 8 7 10 9 4
'GABRA6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 0.24

Table S11556.  Gene #1128: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GABRA6 MUTATED 1 0 0 3 0
GABRA6 WILD-TYPE 31 18 46 24 23
'GABRA6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.89

Table S11557.  Gene #1128: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GABRA6 MUTATED 2 2 0
GABRA6 WILD-TYPE 41 65 36
'GABRA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.18

Table S11558.  Gene #1128: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GABRA6 MUTATED 0 6 13
GABRA6 WILD-TYPE 42 167 134

Figure S3112.  Get High-res Image Gene #1128: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GABRA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S11559.  Gene #1128: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GABRA6 MUTATED 6 3 6
GABRA6 WILD-TYPE 56 70 69
'GABRA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S11560.  Gene #1128: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GABRA6 MUTATED 1 8 8
GABRA6 WILD-TYPE 69 112 92
'GABRA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S11561.  Gene #1128: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GABRA6 MUTATED 1 1 2 1 2 6 1 1 2
GABRA6 WILD-TYPE 40 25 28 28 37 63 19 13 20
'GABRA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.56

Table S11562.  Gene #1128: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GABRA6 MUTATED 3 7 4 5
GABRA6 WILD-TYPE 97 65 68 116
'GABRA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0177 (Fisher's exact test), Q value = 0.13

Table S11563.  Gene #1128: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GABRA6 MUTATED 3 2 9 2 3
GABRA6 WILD-TYPE 56 73 65 117 35

Figure S3113.  Get High-res Image Gene #1128: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GABRA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0971 (Fisher's exact test), Q value = 0.34

Table S11564.  Gene #1128: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GABRA6 MUTATED 3 6 5 0 5
GABRA6 WILD-TYPE 48 70 56 71 90
'GABRA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0354 (Fisher's exact test), Q value = 0.2

Table S11565.  Gene #1128: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GABRA6 MUTATED 2 4 0 2 3 4 0 3 1
GABRA6 WILD-TYPE 67 44 39 14 50 16 21 35 49

Figure S3114.  Get High-res Image Gene #1128: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HECTD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0761 (Fisher's exact test), Q value = 0.3

Table S11566.  Gene #1129: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HECTD2 MUTATED 3 0 0 2 0
HECTD2 WILD-TYPE 29 18 46 25 23
'HECTD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S11567.  Gene #1129: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HECTD2 MUTATED 3 1 1
HECTD2 WILD-TYPE 40 66 35
'HECTD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0083 (Fisher's exact test), Q value = 0.086

Table S11568.  Gene #1129: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HECTD2 MUTATED 0 1 9
HECTD2 WILD-TYPE 42 172 138

Figure S3115.  Get High-res Image Gene #1129: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HECTD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S11569.  Gene #1129: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HECTD2 MUTATED 3 0 2
HECTD2 WILD-TYPE 59 73 73
'HECTD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S11570.  Gene #1129: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HECTD2 MUTATED 1 3 5
HECTD2 WILD-TYPE 69 117 95
'HECTD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S11571.  Gene #1129: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HECTD2 MUTATED 1 1 2 1 0 4 0 0 0
HECTD2 WILD-TYPE 40 25 28 28 39 65 20 14 22
'HECTD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S11572.  Gene #1129: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HECTD2 MUTATED 0 2 3 5
HECTD2 WILD-TYPE 100 70 69 116
'HECTD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0577 (Fisher's exact test), Q value = 0.26

Table S11573.  Gene #1129: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HECTD2 MUTATED 1 0 4 2 3
HECTD2 WILD-TYPE 58 75 70 117 35
'HECTD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S11574.  Gene #1129: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HECTD2 MUTATED 1 3 1 1 2
HECTD2 WILD-TYPE 50 73 60 70 93
'HECTD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S11575.  Gene #1129: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HECTD2 MUTATED 1 3 0 0 1 2 0 1 0
HECTD2 WILD-TYPE 68 45 39 16 52 18 21 37 50
'ARHGAP11A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S11576.  Gene #1130: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARHGAP11A MUTATED 2 3 9
ARHGAP11A WILD-TYPE 40 170 138
'ARHGAP11A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S11577.  Gene #1130: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARHGAP11A MUTATED 6 2 3
ARHGAP11A WILD-TYPE 56 71 72
'ARHGAP11A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S11578.  Gene #1130: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARHGAP11A MUTATED 1 4 5
ARHGAP11A WILD-TYPE 69 116 95
'ARHGAP11A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S11579.  Gene #1130: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARHGAP11A MUTATED 2 1 0 1 1 4 0 0 1
ARHGAP11A WILD-TYPE 39 25 30 28 38 65 20 14 21
'ARHGAP11A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.24

Table S11580.  Gene #1130: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARHGAP11A MUTATED 3 2 7 2
ARHGAP11A WILD-TYPE 97 70 65 119
'ARHGAP11A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S11581.  Gene #1130: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARHGAP11A MUTATED 4 3 5 1 1
ARHGAP11A WILD-TYPE 55 72 69 118 37
'ARHGAP11A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S11582.  Gene #1130: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARHGAP11A MUTATED 3 5 4 1 1
ARHGAP11A WILD-TYPE 48 71 57 70 94
'ARHGAP11A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0996 (Fisher's exact test), Q value = 0.34

Table S11583.  Gene #1130: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARHGAP11A MUTATED 1 3 2 1 6 0 0 1 0
ARHGAP11A WILD-TYPE 68 45 37 15 47 20 21 37 50
'ARHGAP11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.17

Table S11584.  Gene #1130: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ARHGAP11A MUTATED 0 0 1 0 3 0
ARHGAP11A WILD-TYPE 13 16 13 11 8 9

Figure S3116.  Get High-res Image Gene #1130: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ARHGAP11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S11585.  Gene #1130: 'ARHGAP11A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ARHGAP11A MUTATED 0 0 0 1 1 1 1 0 0
ARHGAP11A WILD-TYPE 11 7 7 8 7 6 10 9 5
'OR4A16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S11586.  Gene #1131: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OR4A16 MUTATED 2 0 1 0 0
OR4A16 WILD-TYPE 30 18 45 27 23
'OR4A16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11587.  Gene #1131: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OR4A16 MUTATED 1 1 1
OR4A16 WILD-TYPE 42 66 35
'OR4A16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.73

Table S11588.  Gene #1131: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR4A16 MUTATED 3 5 6
OR4A16 WILD-TYPE 39 168 141
'OR4A16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S11589.  Gene #1131: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR4A16 MUTATED 6 2 3
OR4A16 WILD-TYPE 56 71 72
'OR4A16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S11590.  Gene #1131: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR4A16 MUTATED 1 6 6
OR4A16 WILD-TYPE 69 114 94
'OR4A16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S11591.  Gene #1131: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR4A16 MUTATED 3 1 2 1 1 3 0 1 1
OR4A16 WILD-TYPE 38 25 28 28 38 66 20 13 21
'OR4A16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.77

Table S11592.  Gene #1131: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR4A16 MUTATED 4 2 5 3
OR4A16 WILD-TYPE 96 70 67 118
'OR4A16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.91

Table S11593.  Gene #1131: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR4A16 MUTATED 4 4 2 3 1
OR4A16 WILD-TYPE 55 71 72 116 37
'OR4A16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S11594.  Gene #1131: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR4A16 MUTATED 3 2 3 4 2
OR4A16 WILD-TYPE 48 74 58 67 93
'OR4A16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S11595.  Gene #1131: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR4A16 MUTATED 3 4 2 1 1 1 0 1 1
OR4A16 WILD-TYPE 66 44 37 15 52 19 21 37 49
'OR4A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S11596.  Gene #1131: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR4A16 MUTATED 0 1 1 0 0 1
OR4A16 WILD-TYPE 13 15 13 11 11 8
'OR4A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S11597.  Gene #1131: 'OR4A16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR4A16 MUTATED 2 1 0 0 0 0 0 0 0
OR4A16 WILD-TYPE 9 6 7 9 8 7 11 9 5
'TSHZ1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S11598.  Gene #1132: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TSHZ1 MUTATED 2 0 0 2 0
TSHZ1 WILD-TYPE 30 18 46 25 23
'TSHZ1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S11599.  Gene #1132: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TSHZ1 MUTATED 3 1 0
TSHZ1 WILD-TYPE 40 66 36
'TSHZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00574 (Fisher's exact test), Q value = 0.072

Table S11600.  Gene #1132: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TSHZ1 MUTATED 1 1 10
TSHZ1 WILD-TYPE 41 172 137

Figure S3117.  Get High-res Image Gene #1132: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TSHZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.77

Table S11601.  Gene #1132: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TSHZ1 MUTATED 3 1 4
TSHZ1 WILD-TYPE 59 72 71
'TSHZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S11602.  Gene #1132: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TSHZ1 MUTATED 0 4 6
TSHZ1 WILD-TYPE 70 116 94
'TSHZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S11603.  Gene #1132: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TSHZ1 MUTATED 0 0 1 1 1 5 2 0 0
TSHZ1 WILD-TYPE 41 26 29 28 38 64 18 14 22
'TSHZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.52

Table S11604.  Gene #1132: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TSHZ1 MUTATED 1 5 2 4
TSHZ1 WILD-TYPE 99 67 70 117
'TSHZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S11605.  Gene #1132: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TSHZ1 MUTATED 0 3 5 1 3
TSHZ1 WILD-TYPE 59 72 69 118 35

Figure S3118.  Get High-res Image Gene #1132: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TSHZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S11606.  Gene #1132: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TSHZ1 MUTATED 0 6 1 1 3
TSHZ1 WILD-TYPE 51 70 60 70 92
'TSHZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S11607.  Gene #1132: 'TSHZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TSHZ1 MUTATED 2 1 0 2 2 1 1 1 1
TSHZ1 WILD-TYPE 67 47 39 14 51 19 20 37 49
'URGCP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 0.18

Table S11608.  Gene #1133: 'URGCP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
URGCP MUTATED 1 3 11
URGCP WILD-TYPE 41 170 136

Figure S3119.  Get High-res Image Gene #1133: 'URGCP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'URGCP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 0.24

Table S11609.  Gene #1133: 'URGCP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
URGCP MUTATED 8 2 3
URGCP WILD-TYPE 54 71 72

Figure S3120.  Get High-res Image Gene #1133: 'URGCP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'URGCP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S11610.  Gene #1133: 'URGCP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
URGCP MUTATED 3 6 4
URGCP WILD-TYPE 67 114 96
'URGCP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S11611.  Gene #1133: 'URGCP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
URGCP MUTATED 3 1 0 1 2 3 0 3 0
URGCP WILD-TYPE 38 25 30 28 37 66 20 11 22
'URGCP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0476 (Fisher's exact test), Q value = 0.23

Table S11612.  Gene #1133: 'URGCP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
URGCP MUTATED 2 5 6 2
URGCP WILD-TYPE 98 67 66 119

Figure S3121.  Get High-res Image Gene #1133: 'URGCP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'URGCP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S11613.  Gene #1133: 'URGCP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
URGCP MUTATED 4 4 5 1 1
URGCP WILD-TYPE 55 71 69 118 37
'URGCP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0435 (Fisher's exact test), Q value = 0.22

Table S11614.  Gene #1133: 'URGCP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
URGCP MUTATED 1 6 5 0 3
URGCP WILD-TYPE 50 70 56 71 92

Figure S3122.  Get High-res Image Gene #1133: 'URGCP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'URGCP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S11615.  Gene #1133: 'URGCP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
URGCP MUTATED 3 5 1 1 1 1 0 2 1
URGCP WILD-TYPE 66 43 38 15 52 19 21 36 49
'URGCP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S11616.  Gene #1133: 'URGCP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
URGCP MUTATED 0 1 2 0 2 0
URGCP WILD-TYPE 13 15 12 11 9 9
'URGCP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S11617.  Gene #1133: 'URGCP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
URGCP MUTATED 0 1 0 1 2 0 1 0 0
URGCP WILD-TYPE 11 6 7 8 6 7 10 9 5
'FRMD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S11618.  Gene #1134: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FRMD6 MUTATED 2 1 7
FRMD6 WILD-TYPE 40 172 140

Figure S3123.  Get High-res Image Gene #1134: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FRMD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.23

Table S11619.  Gene #1134: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FRMD6 MUTATED 1 1 7
FRMD6 WILD-TYPE 61 72 68

Figure S3124.  Get High-res Image Gene #1134: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FRMD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S11620.  Gene #1134: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FRMD6 MUTATED 3 5 1
FRMD6 WILD-TYPE 67 115 99
'FRMD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S11621.  Gene #1134: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FRMD6 MUTATED 1 0 1 3 1 1 0 2 0
FRMD6 WILD-TYPE 40 26 29 26 38 68 20 12 22
'FRMD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.12

Table S11622.  Gene #1134: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FRMD6 MUTATED 1 6 2 1
FRMD6 WILD-TYPE 99 66 70 120

Figure S3125.  Get High-res Image Gene #1134: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FRMD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0349 (Fisher's exact test), Q value = 0.2

Table S11623.  Gene #1134: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FRMD6 MUTATED 2 1 6 1 0
FRMD6 WILD-TYPE 57 74 68 118 38

Figure S3126.  Get High-res Image Gene #1134: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FRMD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00436 (Fisher's exact test), Q value = 0.06

Table S11624.  Gene #1134: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FRMD6 MUTATED 0 7 2 0 1
FRMD6 WILD-TYPE 51 69 59 71 94

Figure S3127.  Get High-res Image Gene #1134: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FRMD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0274 (Fisher's exact test), Q value = 0.17

Table S11625.  Gene #1134: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FRMD6 MUTATED 3 2 0 3 1 1 0 0 0
FRMD6 WILD-TYPE 66 46 39 13 52 19 21 38 50

Figure S3128.  Get High-res Image Gene #1134: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CPS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0388 (Fisher's exact test), Q value = 0.21

Table S11626.  Gene #1135: 'CPS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CPS1 MUTATED 6 1 1 2 0
CPS1 WILD-TYPE 26 17 45 25 23

Figure S3129.  Get High-res Image Gene #1135: 'CPS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CPS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S11627.  Gene #1135: 'CPS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CPS1 MUTATED 5 3 2
CPS1 WILD-TYPE 38 64 34
'CPS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S11628.  Gene #1135: 'CPS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CPS1 MUTATED 2 8 19
CPS1 WILD-TYPE 40 165 128

Figure S3130.  Get High-res Image Gene #1135: 'CPS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CPS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S11629.  Gene #1135: 'CPS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CPS1 MUTATED 7 6 7
CPS1 WILD-TYPE 55 67 68
'CPS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00617 (Fisher's exact test), Q value = 0.074

Table S11630.  Gene #1135: 'CPS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CPS1 MUTATED 1 11 15
CPS1 WILD-TYPE 69 109 85

Figure S3131.  Get High-res Image Gene #1135: 'CPS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CPS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S11631.  Gene #1135: 'CPS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CPS1 MUTATED 3 2 1 3 3 10 1 1 3
CPS1 WILD-TYPE 38 24 29 26 36 59 19 13 19
'CPS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S11632.  Gene #1135: 'CPS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CPS1 MUTATED 4 10 7 9
CPS1 WILD-TYPE 96 62 65 112
'CPS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S11633.  Gene #1135: 'CPS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CPS1 MUTATED 3 6 10 7 4
CPS1 WILD-TYPE 56 69 64 112 34
'CPS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S11634.  Gene #1135: 'CPS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CPS1 MUTATED 4 9 2 6 8
CPS1 WILD-TYPE 47 67 59 65 87
'CPS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S11635.  Gene #1135: 'CPS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CPS1 MUTATED 5 5 2 2 5 3 1 4 2
CPS1 WILD-TYPE 64 43 37 14 48 17 20 34 48
'CPS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S11636.  Gene #1135: 'CPS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CPS1 MUTATED 0 0 2 0 2 1
CPS1 WILD-TYPE 13 16 12 11 9 8
'CPS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S11637.  Gene #1135: 'CPS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CPS1 MUTATED 0 0 0 1 1 0 2 1 0
CPS1 WILD-TYPE 11 7 7 8 7 7 9 8 5
'TUBB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.19

Table S11638.  Gene #1136: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TUBB4 MUTATED 0 0 5
TUBB4 WILD-TYPE 42 173 142

Figure S3132.  Get High-res Image Gene #1136: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TUBB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S11639.  Gene #1136: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TUBB4 MUTATED 1 0 2
TUBB4 WILD-TYPE 61 73 73
'TUBB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S11640.  Gene #1136: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TUBB4 MUTATED 0 3 1
TUBB4 WILD-TYPE 70 117 99
'TUBB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S11641.  Gene #1136: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TUBB4 MUTATED 0 0 0 2 1 1 0 0 0
TUBB4 WILD-TYPE 41 26 30 27 38 68 20 14 22
'TUBB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S11642.  Gene #1136: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TUBB4 MUTATED 0 2 1 2
TUBB4 WILD-TYPE 100 70 71 119
'TUBB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S11643.  Gene #1136: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TUBB4 MUTATED 0 0 3 1 1
TUBB4 WILD-TYPE 59 75 71 118 37
'TUBB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.98

Table S11644.  Gene #1136: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TUBB4 MUTATED 0 2 1 0 2
TUBB4 WILD-TYPE 51 74 60 71 93
'TUBB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S11645.  Gene #1136: 'TUBB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TUBB4 MUTATED 1 1 0 1 0 0 1 1 0
TUBB4 WILD-TYPE 68 47 39 15 53 20 20 37 50
'USF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.27

Table S11646.  Gene #1137: 'USF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
USF1 MUTATED 1 0 4
USF1 WILD-TYPE 41 173 143
'USF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S11647.  Gene #1137: 'USF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
USF1 MUTATED 0 0 3
USF1 WILD-TYPE 62 73 72
'USF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S11648.  Gene #1137: 'USF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
USF1 MUTATED 1 3 1
USF1 WILD-TYPE 69 117 99
'USF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S11649.  Gene #1137: 'USF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
USF1 MUTATED 1 0 1 1 1 0 0 1 0
USF1 WILD-TYPE 40 26 29 28 38 69 20 13 22
'USF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S11650.  Gene #1137: 'USF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
USF1 MUTATED 0 2 1 2
USF1 WILD-TYPE 100 70 71 119
'USF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S11651.  Gene #1137: 'USF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
USF1 MUTATED 0 0 3 1 1
USF1 WILD-TYPE 59 75 71 118 37
'USF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S11652.  Gene #1137: 'USF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
USF1 MUTATED 1 2 0 0 2
USF1 WILD-TYPE 50 74 61 71 93
'USF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S11653.  Gene #1137: 'USF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
USF1 MUTATED 0 1 0 1 0 2 0 1 0
USF1 WILD-TYPE 69 47 39 15 53 18 21 37 50

Figure S3133.  Get High-res Image Gene #1137: 'USF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TM7SF4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.081 (Fisher's exact test), Q value = 0.31

Table S11654.  Gene #1138: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TM7SF4 MUTATED 0 1 6
TM7SF4 WILD-TYPE 42 172 141
'TM7SF4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S11655.  Gene #1138: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TM7SF4 MUTATED 1 2 3
TM7SF4 WILD-TYPE 61 71 72
'TM7SF4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S11656.  Gene #1138: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TM7SF4 MUTATED 1 4 2
TM7SF4 WILD-TYPE 69 116 98
'TM7SF4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.993 (Fisher's exact test), Q value = 1

Table S11657.  Gene #1138: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TM7SF4 MUTATED 1 1 1 0 1 3 0 0 0
TM7SF4 WILD-TYPE 40 25 29 29 38 66 20 14 22
'TM7SF4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S11658.  Gene #1138: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TM7SF4 MUTATED 2 1 2 2
TM7SF4 WILD-TYPE 98 71 70 119
'TM7SF4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S11659.  Gene #1138: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TM7SF4 MUTATED 0 2 2 2 1
TM7SF4 WILD-TYPE 59 73 72 117 37
'TM7SF4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S11660.  Gene #1138: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TM7SF4 MUTATED 0 3 1 0 3
TM7SF4 WILD-TYPE 51 73 60 71 92
'TM7SF4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S11661.  Gene #1138: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TM7SF4 MUTATED 2 2 0 0 0 1 0 2 0
TM7SF4 WILD-TYPE 67 46 39 16 53 19 21 36 50
'PPP1R12A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.92

Table S11662.  Gene #1139: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PPP1R12A MUTATED 1 5 7
PPP1R12A WILD-TYPE 41 168 140
'PPP1R12A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11663.  Gene #1139: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PPP1R12A MUTATED 3 4 4
PPP1R12A WILD-TYPE 59 69 71
'PPP1R12A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.91

Table S11664.  Gene #1139: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PPP1R12A MUTATED 2 4 6
PPP1R12A WILD-TYPE 68 116 94
'PPP1R12A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S11665.  Gene #1139: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PPP1R12A MUTATED 2 0 1 1 2 5 0 0 1
PPP1R12A WILD-TYPE 39 26 29 28 37 64 20 14 21
'PPP1R12A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S11666.  Gene #1139: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PPP1R12A MUTATED 4 4 2 3
PPP1R12A WILD-TYPE 96 68 70 118
'PPP1R12A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.17

Table S11667.  Gene #1139: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PPP1R12A MUTATED 1 2 7 1 2
PPP1R12A WILD-TYPE 58 73 67 118 36

Figure S3134.  Get High-res Image Gene #1139: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPP1R12A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0877 (Fisher's exact test), Q value = 0.32

Table S11668.  Gene #1139: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PPP1R12A MUTATED 4 5 0 1 3
PPP1R12A WILD-TYPE 47 71 61 70 92
'PPP1R12A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S11669.  Gene #1139: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PPP1R12A MUTATED 4 1 1 1 2 2 1 1 0
PPP1R12A WILD-TYPE 65 47 38 15 51 18 20 37 50
'PPP1R12A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.15

Table S11670.  Gene #1139: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PPP1R12A MUTATED 1 0 0 0 3 0
PPP1R12A WILD-TYPE 12 16 14 11 8 9

Figure S3135.  Get High-res Image Gene #1139: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PPP1R12A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.86

Table S11671.  Gene #1139: 'PPP1R12A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PPP1R12A MUTATED 0 0 0 1 0 1 1 0 1
PPP1R12A WILD-TYPE 11 7 7 8 8 6 10 9 4
'APOBEC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S11672.  Gene #1140: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
APOBEC4 MUTATED 2 0 0 1 0
APOBEC4 WILD-TYPE 30 18 46 26 23
'APOBEC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S11673.  Gene #1140: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
APOBEC4 MUTATED 2 1 0
APOBEC4 WILD-TYPE 41 66 36
'APOBEC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.1

Table S11674.  Gene #1140: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
APOBEC4 MUTATED 0 0 6
APOBEC4 WILD-TYPE 42 173 141

Figure S3136.  Get High-res Image Gene #1140: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'APOBEC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S11675.  Gene #1140: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
APOBEC4 MUTATED 3 0 1
APOBEC4 WILD-TYPE 59 73 74
'APOBEC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S11676.  Gene #1140: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
APOBEC4 MUTATED 0 4 3
APOBEC4 WILD-TYPE 70 116 97
'APOBEC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S11677.  Gene #1140: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
APOBEC4 MUTATED 1 0 1 1 0 1 1 1 1
APOBEC4 WILD-TYPE 40 26 29 28 39 68 19 13 21
'APOBEC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S11678.  Gene #1140: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
APOBEC4 MUTATED 0 2 2 3
APOBEC4 WILD-TYPE 100 70 70 118
'APOBEC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S11679.  Gene #1140: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
APOBEC4 MUTATED 1 0 3 1 2
APOBEC4 WILD-TYPE 58 75 71 118 36
'APOBEC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S11680.  Gene #1140: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
APOBEC4 MUTATED 0 3 1 0 3
APOBEC4 WILD-TYPE 51 73 60 71 92
'APOBEC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S11681.  Gene #1140: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
APOBEC4 MUTATED 1 2 0 1 0 1 0 2 0
APOBEC4 WILD-TYPE 68 46 39 15 53 19 21 36 50
'SPOPL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.91

Table S11682.  Gene #1141: 'SPOPL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SPOPL MUTATED 2 4 4
SPOPL WILD-TYPE 40 169 143
'SPOPL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S11683.  Gene #1141: 'SPOPL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SPOPL MUTATED 3 3 2
SPOPL WILD-TYPE 59 70 73
'SPOPL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S11684.  Gene #1141: 'SPOPL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SPOPL MUTATED 0 4 5
SPOPL WILD-TYPE 70 116 95
'SPOPL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S11685.  Gene #1141: 'SPOPL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SPOPL MUTATED 1 0 1 2 0 4 0 1 0
SPOPL WILD-TYPE 40 26 29 27 39 65 20 13 22
'SPOPL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S11686.  Gene #1141: 'SPOPL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SPOPL MUTATED 4 2 2 2
SPOPL WILD-TYPE 96 70 70 119
'SPOPL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S11687.  Gene #1141: 'SPOPL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SPOPL MUTATED 1 5 2 2 0
SPOPL WILD-TYPE 58 70 72 117 38
'SPOPL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S11688.  Gene #1141: 'SPOPL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SPOPL MUTATED 1 2 3 1 3
SPOPL WILD-TYPE 50 74 58 70 92
'SPOPL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S11689.  Gene #1141: 'SPOPL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SPOPL MUTATED 4 2 1 0 0 0 1 1 1
SPOPL WILD-TYPE 65 46 38 16 53 20 20 37 49
'GPR98 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0023 (Fisher's exact test), Q value = 0.041

Table S11690.  Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GPR98 MUTATED 8 0 1 5 1
GPR98 WILD-TYPE 24 18 45 22 22

Figure S3137.  Get High-res Image Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GPR98 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00302 (Fisher's exact test), Q value = 0.048

Table S11691.  Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GPR98 MUTATED 10 2 3
GPR98 WILD-TYPE 33 65 33

Figure S3138.  Get High-res Image Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPR98 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S11692.  Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GPR98 MUTATED 3 16 42
GPR98 WILD-TYPE 39 157 105

Figure S3139.  Get High-res Image Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPR98 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 0.34

Table S11693.  Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GPR98 MUTATED 16 10 20
GPR98 WILD-TYPE 46 63 55
'GPR98 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00401 (Fisher's exact test), Q value = 0.057

Table S11694.  Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GPR98 MUTATED 6 17 27
GPR98 WILD-TYPE 64 103 73

Figure S3140.  Get High-res Image Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GPR98 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.12

Table S11695.  Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GPR98 MUTATED 2 3 3 5 8 22 4 2 1
GPR98 WILD-TYPE 39 23 27 24 31 47 16 12 21

Figure S3141.  Get High-res Image Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'GPR98 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S11696.  Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GPR98 MUTATED 11 20 15 15
GPR98 WILD-TYPE 89 52 57 106

Figure S3142.  Get High-res Image Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GPR98 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S11697.  Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GPR98 MUTATED 9 10 25 7 10
GPR98 WILD-TYPE 50 65 49 112 28

Figure S3143.  Get High-res Image Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GPR98 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00054 (Fisher's exact test), Q value = 0.017

Table S11698.  Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GPR98 MUTATED 5 26 10 6 13
GPR98 WILD-TYPE 46 50 51 65 82

Figure S3144.  Get High-res Image Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GPR98 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00235 (Fisher's exact test), Q value = 0.041

Table S11699.  Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GPR98 MUTATED 12 12 4 9 7 2 3 8 3
GPR98 WILD-TYPE 57 36 35 7 46 18 18 30 47

Figure S3145.  Get High-res Image Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GPR98 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S11700.  Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GPR98 MUTATED 1 4 2 1 5 0
GPR98 WILD-TYPE 12 12 12 10 6 9
'GPR98 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S11701.  Gene #1142: 'GPR98 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GPR98 MUTATED 2 2 0 4 2 1 2 0 0
GPR98 WILD-TYPE 9 5 7 5 6 6 9 9 5
'TMEM41B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S11702.  Gene #1143: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMEM41B MUTATED 0 1 3
TMEM41B WILD-TYPE 42 172 144
'TMEM41B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S11703.  Gene #1143: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TMEM41B MUTATED 2 0 1
TMEM41B WILD-TYPE 60 73 74
'TMEM41B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.92

Table S11704.  Gene #1143: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TMEM41B MUTATED 0 1 2
TMEM41B WILD-TYPE 70 119 98
'TMEM41B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.096

Table S11705.  Gene #1143: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TMEM41B MUTATED 0 0 0 0 0 0 2 0 1
TMEM41B WILD-TYPE 41 26 30 29 39 69 18 14 21

Figure S3146.  Get High-res Image Gene #1143: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'TMEM41B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11706.  Gene #1143: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMEM41B MUTATED 1 1 1 1
TMEM41B WILD-TYPE 99 71 71 120
'TMEM41B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S11707.  Gene #1143: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMEM41B MUTATED 1 0 2 0 1
TMEM41B WILD-TYPE 58 75 72 119 37
'TMEM41B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S11708.  Gene #1143: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMEM41B MUTATED 0 3 0 0 1
TMEM41B WILD-TYPE 51 73 61 71 94
'TMEM41B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S11709.  Gene #1143: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMEM41B MUTATED 0 1 0 0 2 0 0 1 0
TMEM41B WILD-TYPE 69 47 39 16 51 20 21 37 50
'RGS3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S11710.  Gene #1144: 'RGS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RGS3 MUTATED 4 0 0 1 0
RGS3 WILD-TYPE 28 18 46 26 23

Figure S3147.  Get High-res Image Gene #1144: 'RGS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RGS3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00238 (Fisher's exact test), Q value = 0.041

Table S11711.  Gene #1144: 'RGS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RGS3 MUTATED 5 0 0
RGS3 WILD-TYPE 38 67 36

Figure S3148.  Get High-res Image Gene #1144: 'RGS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RGS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0019 (Fisher's exact test), Q value = 0.037

Table S11712.  Gene #1144: 'RGS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RGS3 MUTATED 0 2 13
RGS3 WILD-TYPE 42 171 134

Figure S3149.  Get High-res Image Gene #1144: 'RGS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RGS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.92

Table S11713.  Gene #1144: 'RGS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RGS3 MUTATED 4 2 4
RGS3 WILD-TYPE 58 71 71
'RGS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.78

Table S11714.  Gene #1144: 'RGS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RGS3 MUTATED 2 5 7
RGS3 WILD-TYPE 68 115 93
'RGS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S11715.  Gene #1144: 'RGS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RGS3 MUTATED 0 1 0 3 4 5 0 1 0
RGS3 WILD-TYPE 41 25 30 26 35 64 20 13 22
'RGS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S11716.  Gene #1144: 'RGS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RGS3 MUTATED 2 5 2 6
RGS3 WILD-TYPE 98 67 70 115
'RGS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00052 (Fisher's exact test), Q value = 0.016

Table S11717.  Gene #1144: 'RGS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RGS3 MUTATED 0 2 7 1 5
RGS3 WILD-TYPE 59 73 67 118 33

Figure S3150.  Get High-res Image Gene #1144: 'RGS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RGS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S11718.  Gene #1144: 'RGS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RGS3 MUTATED 0 6 1 3 4
RGS3 WILD-TYPE 51 70 60 68 91
'RGS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.62

Table S11719.  Gene #1144: 'RGS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RGS3 MUTATED 6 2 0 1 1 0 0 3 1
RGS3 WILD-TYPE 63 46 39 15 52 20 21 35 49
'RGS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S11720.  Gene #1144: 'RGS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RGS3 MUTATED 0 0 2 0 1 1
RGS3 WILD-TYPE 13 16 12 11 10 8
'RGS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S11721.  Gene #1144: 'RGS3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RGS3 MUTATED 0 0 0 0 1 1 1 1 0
RGS3 WILD-TYPE 11 7 7 9 7 6 10 8 5
'FAM119A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.56

Table S11722.  Gene #1145: 'FAM119A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM119A MUTATED 0 1 4
FAM119A WILD-TYPE 42 172 143
'FAM119A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S11723.  Gene #1145: 'FAM119A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM119A MUTATED 0 1 2
FAM119A WILD-TYPE 62 72 73
'FAM119A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11724.  Gene #1145: 'FAM119A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM119A MUTATED 1 1 1 2
FAM119A WILD-TYPE 99 71 71 119
'FAM119A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S11725.  Gene #1145: 'FAM119A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM119A MUTATED 0 1 2 0 2
FAM119A WILD-TYPE 59 74 72 119 36

Figure S3151.  Get High-res Image Gene #1145: 'FAM119A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM119A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S11726.  Gene #1145: 'FAM119A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM119A MUTATED 2 0 1 0 1
FAM119A WILD-TYPE 49 76 60 71 94
'FAM119A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S11727.  Gene #1145: 'FAM119A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM119A MUTATED 1 1 0 0 1 0 0 1 0
FAM119A WILD-TYPE 68 47 39 16 52 20 21 37 50
'TRIM45 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.18

Table S11728.  Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TRIM45 MUTATED 4 0 0 1 0
TRIM45 WILD-TYPE 28 18 46 26 23

Figure S3152.  Get High-res Image Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRIM45 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0022 (Fisher's exact test), Q value = 0.04

Table S11729.  Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TRIM45 MUTATED 5 0 0
TRIM45 WILD-TYPE 38 67 36

Figure S3153.  Get High-res Image Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TRIM45 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00165 (Fisher's exact test), Q value = 0.034

Table S11730.  Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRIM45 MUTATED 1 1 12
TRIM45 WILD-TYPE 41 172 135

Figure S3154.  Get High-res Image Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRIM45 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.2

Table S11731.  Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRIM45 MUTATED 3 0 6
TRIM45 WILD-TYPE 59 73 69

Figure S3155.  Get High-res Image Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TRIM45 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S11732.  Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRIM45 MUTATED 2 4 5
TRIM45 WILD-TYPE 68 116 95
'TRIM45 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S11733.  Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRIM45 MUTATED 2 0 0 1 3 3 2 0 0
TRIM45 WILD-TYPE 39 26 30 28 36 66 18 14 22
'TRIM45 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S11734.  Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRIM45 MUTATED 0 5 4 5
TRIM45 WILD-TYPE 100 67 68 116

Figure S3156.  Get High-res Image Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TRIM45 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.012

Table S11735.  Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRIM45 MUTATED 2 1 6 0 5
TRIM45 WILD-TYPE 57 74 68 119 33

Figure S3157.  Get High-res Image Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRIM45 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 0.32

Table S11736.  Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRIM45 MUTATED 0 7 2 1 4
TRIM45 WILD-TYPE 51 69 59 70 91
'TRIM45 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00162 (Fisher's exact test), Q value = 0.033

Table S11737.  Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRIM45 MUTATED 0 4 0 3 2 2 0 3 0
TRIM45 WILD-TYPE 69 44 39 13 51 18 21 35 50

Figure S3158.  Get High-res Image Gene #1146: 'TRIM45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAGEA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S11738.  Gene #1147: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAGEA4 MUTATED 2 2 2
MAGEA4 WILD-TYPE 40 171 145
'MAGEA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11739.  Gene #1147: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAGEA4 MUTATED 1 2 2
MAGEA4 WILD-TYPE 61 71 73
'MAGEA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S11740.  Gene #1147: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAGEA4 MUTATED 2 2 2
MAGEA4 WILD-TYPE 68 118 98
'MAGEA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S11741.  Gene #1147: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAGEA4 MUTATED 1 0 0 1 1 2 0 0 1
MAGEA4 WILD-TYPE 40 26 30 28 38 67 20 14 21
'MAGEA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S11742.  Gene #1147: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAGEA4 MUTATED 1 2 2 0
MAGEA4 WILD-TYPE 99 70 70 121
'MAGEA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S11743.  Gene #1147: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAGEA4 MUTATED 1 1 3 0 0
MAGEA4 WILD-TYPE 58 74 71 119 38
'MAGEA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.63

Table S11744.  Gene #1147: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAGEA4 MUTATED 1 3 1 1 0
MAGEA4 WILD-TYPE 50 73 60 70 95
'MAGEA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0488 (Fisher's exact test), Q value = 0.24

Table S11745.  Gene #1147: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAGEA4 MUTATED 0 2 1 2 1 0 0 0 0
MAGEA4 WILD-TYPE 69 46 38 14 52 20 21 38 50

Figure S3159.  Get High-res Image Gene #1147: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAGEA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0958 (Fisher's exact test), Q value = 0.34

Table S11746.  Gene #1147: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAGEA4 MUTATED 0 0 0 1 2 0
MAGEA4 WILD-TYPE 13 16 14 10 9 9
'MAGEA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S11747.  Gene #1147: 'MAGEA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAGEA4 MUTATED 0 0 1 1 0 0 1 0 0
MAGEA4 WILD-TYPE 11 7 6 8 8 7 10 9 5
'MANF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0625 (Fisher's exact test), Q value = 0.27

Table S11748.  Gene #1148: 'MANF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MANF MUTATED 0 0 4
MANF WILD-TYPE 42 173 143
'MANF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S11749.  Gene #1148: 'MANF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MANF MUTATED 2 0 2
MANF WILD-TYPE 60 73 73
'MANF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S11750.  Gene #1148: 'MANF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MANF MUTATED 0 2 1
MANF WILD-TYPE 70 118 99
'MANF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S11751.  Gene #1148: 'MANF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MANF MUTATED 0 0 0 0 1 1 1 0 0
MANF WILD-TYPE 41 26 30 29 38 68 19 14 22
'MANF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S11752.  Gene #1148: 'MANF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MANF MUTATED 0 1 2 1
MANF WILD-TYPE 100 71 70 120
'MANF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0267 (Fisher's exact test), Q value = 0.17

Table S11753.  Gene #1148: 'MANF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MANF MUTATED 0 0 3 0 1
MANF WILD-TYPE 59 75 71 119 37

Figure S3160.  Get High-res Image Gene #1148: 'MANF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MANF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.94

Table S11754.  Gene #1148: 'MANF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MANF MUTATED 0 2 1 0 1
MANF WILD-TYPE 51 74 60 71 94
'MANF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S11755.  Gene #1148: 'MANF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MANF MUTATED 0 1 0 0 2 0 0 1 0
MANF WILD-TYPE 69 47 39 16 51 20 21 37 50
'TBC1D10C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 0.26

Table S11756.  Gene #1149: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TBC1D10C MUTATED 2 1 5
TBC1D10C WILD-TYPE 40 172 142
'TBC1D10C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.18

Table S11757.  Gene #1149: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TBC1D10C MUTATED 1 0 5
TBC1D10C WILD-TYPE 61 73 70

Figure S3161.  Get High-res Image Gene #1149: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TBC1D10C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S11758.  Gene #1149: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TBC1D10C MUTATED 1 1 3
TBC1D10C WILD-TYPE 69 119 97
'TBC1D10C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0766 (Fisher's exact test), Q value = 0.3

Table S11759.  Gene #1149: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TBC1D10C MUTATED 0 0 0 2 0 1 2 0 0
TBC1D10C WILD-TYPE 41 26 30 27 39 68 18 14 22
'TBC1D10C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S11760.  Gene #1149: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TBC1D10C MUTATED 1 3 2 2
TBC1D10C WILD-TYPE 99 69 70 119
'TBC1D10C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0043 (Fisher's exact test), Q value = 0.06

Table S11761.  Gene #1149: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TBC1D10C MUTATED 0 1 5 0 2
TBC1D10C WILD-TYPE 59 74 69 119 36

Figure S3162.  Get High-res Image Gene #1149: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TBC1D10C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S11762.  Gene #1149: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TBC1D10C MUTATED 1 4 0 2 1
TBC1D10C WILD-TYPE 50 72 61 69 94
'TBC1D10C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S11763.  Gene #1149: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TBC1D10C MUTATED 3 0 0 2 1 0 1 1 0
TBC1D10C WILD-TYPE 66 48 39 14 52 20 20 37 50
'TBC1D10C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S11764.  Gene #1149: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TBC1D10C MUTATED 1 0 1 0 1 0
TBC1D10C WILD-TYPE 12 16 13 11 10 9
'TBC1D10C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.16

Table S11765.  Gene #1149: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TBC1D10C MUTATED 0 0 0 0 2 0 0 0 1
TBC1D10C WILD-TYPE 11 7 7 9 6 7 11 9 4

Figure S3163.  Get High-res Image Gene #1149: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DPF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.19

Table S11766.  Gene #1150: 'DPF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DPF3 MUTATED 0 0 5
DPF3 WILD-TYPE 42 173 142

Figure S3164.  Get High-res Image Gene #1150: 'DPF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DPF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S11767.  Gene #1150: 'DPF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DPF3 MUTATED 1 0 3
DPF3 WILD-TYPE 61 73 72
'DPF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.88

Table S11768.  Gene #1150: 'DPF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DPF3 MUTATED 2 1 1
DPF3 WILD-TYPE 68 119 99
'DPF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.987 (Fisher's exact test), Q value = 1

Table S11769.  Gene #1150: 'DPF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DPF3 MUTATED 1 0 1 0 1 1 0 0 0
DPF3 WILD-TYPE 40 26 29 29 38 68 20 14 22
'DPF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S11770.  Gene #1150: 'DPF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DPF3 MUTATED 0 2 2 1
DPF3 WILD-TYPE 100 70 70 120
'DPF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0436 (Fisher's exact test), Q value = 0.22

Table S11771.  Gene #1150: 'DPF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DPF3 MUTATED 0 0 4 1 0
DPF3 WILD-TYPE 59 75 70 118 38

Figure S3165.  Get High-res Image Gene #1150: 'DPF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DPF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S11772.  Gene #1150: 'DPF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DPF3 MUTATED 0 3 0 0 2
DPF3 WILD-TYPE 51 73 61 71 93
'DPF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0642 (Fisher's exact test), Q value = 0.27

Table S11773.  Gene #1150: 'DPF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DPF3 MUTATED 0 2 0 1 0 1 0 1 0
DPF3 WILD-TYPE 69 46 39 15 53 19 21 37 50
'DBF4B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S11774.  Gene #1151: 'DBF4B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DBF4B MUTATED 2 0 0 1 0
DBF4B WILD-TYPE 30 18 46 26 23
'DBF4B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11775.  Gene #1151: 'DBF4B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DBF4B MUTATED 1 1 1
DBF4B WILD-TYPE 42 66 35
'DBF4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.31

Table S11776.  Gene #1151: 'DBF4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DBF4B MUTATED 0 1 6
DBF4B WILD-TYPE 42 172 141
'DBF4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.98

Table S11777.  Gene #1151: 'DBF4B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DBF4B MUTATED 2 1 1
DBF4B WILD-TYPE 60 72 74
'DBF4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S11778.  Gene #1151: 'DBF4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DBF4B MUTATED 1 2 3
DBF4B WILD-TYPE 69 118 97
'DBF4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S11779.  Gene #1151: 'DBF4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DBF4B MUTATED 2 0 1 0 1 2 0 0 0
DBF4B WILD-TYPE 39 26 29 29 38 67 20 14 22
'DBF4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S11780.  Gene #1151: 'DBF4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DBF4B MUTATED 1 1 2 3
DBF4B WILD-TYPE 99 71 70 118
'DBF4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S11781.  Gene #1151: 'DBF4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DBF4B MUTATED 1 1 2 2 1
DBF4B WILD-TYPE 58 74 72 117 37
'DBF4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S11782.  Gene #1151: 'DBF4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DBF4B MUTATED 1 1 2 1 2
DBF4B WILD-TYPE 50 75 59 70 93
'DBF4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S11783.  Gene #1151: 'DBF4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DBF4B MUTATED 1 2 0 1 1 1 0 1 0
DBF4B WILD-TYPE 68 46 39 15 52 19 21 37 50
'AKAP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S11784.  Gene #1152: 'AKAP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AKAP7 MUTATED 0 2 3
AKAP7 WILD-TYPE 42 171 144
'AKAP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11785.  Gene #1152: 'AKAP7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AKAP7 MUTATED 1 1 2
AKAP7 WILD-TYPE 61 72 73
'AKAP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.53

Table S11786.  Gene #1152: 'AKAP7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AKAP7 MUTATED 2 2 0
AKAP7 WILD-TYPE 68 118 100
'AKAP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S11787.  Gene #1152: 'AKAP7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AKAP7 MUTATED 2 0 1 1 0 0 0 0 0
AKAP7 WILD-TYPE 39 26 29 28 39 69 20 14 22
'AKAP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11788.  Gene #1152: 'AKAP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AKAP7 MUTATED 1 1 1 2
AKAP7 WILD-TYPE 99 71 71 119
'AKAP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S11789.  Gene #1152: 'AKAP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AKAP7 MUTATED 0 1 2 2 0
AKAP7 WILD-TYPE 59 74 72 117 38
'AKAP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S11790.  Gene #1152: 'AKAP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AKAP7 MUTATED 1 3 0 0 1
AKAP7 WILD-TYPE 50 73 61 71 94
'AKAP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S11791.  Gene #1152: 'AKAP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AKAP7 MUTATED 1 1 0 0 1 1 1 0 0
AKAP7 WILD-TYPE 68 47 39 16 52 19 20 38 50
'RNF215 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S11792.  Gene #1153: 'RNF215 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RNF215 MUTATED 0 1 2
RNF215 WILD-TYPE 42 172 145
'RNF215 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S11793.  Gene #1153: 'RNF215 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RNF215 MUTATED 1 0 2
RNF215 WILD-TYPE 61 73 73
'RNF215 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S11794.  Gene #1153: 'RNF215 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RNF215 MUTATED 1 0 2
RNF215 WILD-TYPE 69 120 98
'RNF215 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S11795.  Gene #1153: 'RNF215 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RNF215 MUTATED 0 1 0 0 0 2 0 0 0
RNF215 WILD-TYPE 41 25 30 29 39 67 20 14 22
'RNF215 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S11796.  Gene #1153: 'RNF215 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RNF215 MUTATED 1 2 0 0
RNF215 WILD-TYPE 99 70 72 121
'RNF215 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S11797.  Gene #1153: 'RNF215 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RNF215 MUTATED 1 0 2 0 0
RNF215 WILD-TYPE 58 75 72 119 38
'RNF215 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S11798.  Gene #1153: 'RNF215 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RNF215 MUTATED 0 2 1 0 0
RNF215 WILD-TYPE 51 74 60 71 95
'RNF215 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S11799.  Gene #1153: 'RNF215 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RNF215 MUTATED 3 0 0 0 0 0 0 0 0
RNF215 WILD-TYPE 66 48 39 16 53 20 21 38 50
'KIRREL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S11800.  Gene #1154: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIRREL2 MUTATED 1 0 0 2 1
KIRREL2 WILD-TYPE 31 18 46 25 22
'KIRREL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S11801.  Gene #1154: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIRREL2 MUTATED 2 1 1
KIRREL2 WILD-TYPE 41 66 35
'KIRREL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S11802.  Gene #1154: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIRREL2 MUTATED 0 0 12
KIRREL2 WILD-TYPE 42 173 135

Figure S3166.  Get High-res Image Gene #1154: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIRREL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 0.16

Table S11803.  Gene #1154: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIRREL2 MUTATED 2 0 6
KIRREL2 WILD-TYPE 60 73 69

Figure S3167.  Get High-res Image Gene #1154: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KIRREL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S11804.  Gene #1154: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIRREL2 MUTATED 1 5 5
KIRREL2 WILD-TYPE 69 115 95
'KIRREL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S11805.  Gene #1154: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIRREL2 MUTATED 1 0 1 1 3 4 1 0 0
KIRREL2 WILD-TYPE 40 26 29 28 36 65 19 14 22
'KIRREL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.14

Table S11806.  Gene #1154: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIRREL2 MUTATED 0 6 2 4
KIRREL2 WILD-TYPE 100 66 70 117

Figure S3168.  Get High-res Image Gene #1154: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIRREL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00113 (Fisher's exact test), Q value = 0.027

Table S11807.  Gene #1154: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIRREL2 MUTATED 0 0 8 2 2
KIRREL2 WILD-TYPE 59 75 66 117 36

Figure S3169.  Get High-res Image Gene #1154: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00452 (Fisher's exact test), Q value = 0.062

Table S11808.  Gene #1154: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIRREL2 MUTATED 0 8 0 1 3
KIRREL2 WILD-TYPE 51 68 61 70 92

Figure S3170.  Get High-res Image Gene #1154: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.012

Table S11809.  Gene #1154: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIRREL2 MUTATED 2 1 1 5 0 1 0 2 0
KIRREL2 WILD-TYPE 67 47 38 11 53 19 21 36 50

Figure S3171.  Get High-res Image Gene #1154: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'METTL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S11810.  Gene #1155: 'METTL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
METTL5 MUTATED 0 2 3
METTL5 WILD-TYPE 42 171 144
'METTL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S11811.  Gene #1155: 'METTL5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
METTL5 MUTATED 0 1 3
METTL5 WILD-TYPE 62 72 72
'METTL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S11812.  Gene #1155: 'METTL5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
METTL5 MUTATED 0 2 3
METTL5 WILD-TYPE 70 118 97
'METTL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S11813.  Gene #1155: 'METTL5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
METTL5 MUTATED 1 2 0 0 1 1 0 0 0
METTL5 WILD-TYPE 40 24 30 29 38 68 20 14 22
'METTL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S11814.  Gene #1155: 'METTL5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
METTL5 MUTATED 1 2 1 1
METTL5 WILD-TYPE 99 70 71 120
'METTL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S11815.  Gene #1155: 'METTL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
METTL5 MUTATED 1 1 2 0 1
METTL5 WILD-TYPE 58 74 72 119 37
'METTL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.55

Table S11816.  Gene #1155: 'METTL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
METTL5 MUTATED 1 3 0 0 1
METTL5 WILD-TYPE 50 73 61 71 94
'METTL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S11817.  Gene #1155: 'METTL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
METTL5 MUTATED 1 0 0 2 0 1 0 1 0
METTL5 WILD-TYPE 68 48 39 14 53 19 21 37 50

Figure S3172.  Get High-res Image Gene #1155: 'METTL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CCR8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S11818.  Gene #1156: 'CCR8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CCR8 MUTATED 2 0 0 1 0
CCR8 WILD-TYPE 30 18 46 26 23
'CCR8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0391 (Fisher's exact test), Q value = 0.21

Table S11819.  Gene #1156: 'CCR8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CCR8 MUTATED 3 0 0
CCR8 WILD-TYPE 40 67 36

Figure S3173.  Get High-res Image Gene #1156: 'CCR8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CCR8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S11820.  Gene #1156: 'CCR8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCR8 MUTATED 1 3 3
CCR8 WILD-TYPE 41 170 144
'CCR8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S11821.  Gene #1156: 'CCR8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCR8 MUTATED 1 2 1
CCR8 WILD-TYPE 61 71 74
'CCR8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S11822.  Gene #1156: 'CCR8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCR8 MUTATED 0 4 2
CCR8 WILD-TYPE 70 116 98
'CCR8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S11823.  Gene #1156: 'CCR8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCR8 MUTATED 1 0 1 1 0 1 0 0 2
CCR8 WILD-TYPE 40 26 29 28 39 68 20 14 20
'CCR8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.98

Table S11824.  Gene #1156: 'CCR8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCR8 MUTATED 2 0 2 3
CCR8 WILD-TYPE 98 72 70 118
'CCR8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0209 (Fisher's exact test), Q value = 0.15

Table S11825.  Gene #1156: 'CCR8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCR8 MUTATED 2 1 1 0 3
CCR8 WILD-TYPE 57 74 73 119 35

Figure S3174.  Get High-res Image Gene #1156: 'CCR8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCR8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S11826.  Gene #1156: 'CCR8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCR8 MUTATED 1 0 2 1 2
CCR8 WILD-TYPE 50 76 59 70 93
'CCR8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S11827.  Gene #1156: 'CCR8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCR8 MUTATED 1 2 1 0 0 0 0 2 0
CCR8 WILD-TYPE 68 46 38 16 53 20 21 36 50
'CCR8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S11828.  Gene #1156: 'CCR8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CCR8 MUTATED 1 1 0 1 0 0
CCR8 WILD-TYPE 12 15 14 10 11 9
'CCR8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S11829.  Gene #1156: 'CCR8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CCR8 MUTATED 0 0 1 0 0 1 0 1 0
CCR8 WILD-TYPE 11 7 6 9 8 6 11 8 5
'OR5AK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S11830.  Gene #1157: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OR5AK2 MUTATED 2 0 0 1 0
OR5AK2 WILD-TYPE 30 18 46 26 23
'OR5AK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S11831.  Gene #1157: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OR5AK2 MUTATED 2 1 0
OR5AK2 WILD-TYPE 41 66 36
'OR5AK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.94

Table S11832.  Gene #1157: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR5AK2 MUTATED 1 3 5
OR5AK2 WILD-TYPE 41 170 142
'OR5AK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.91

Table S11833.  Gene #1157: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR5AK2 MUTATED 2 3 1
OR5AK2 WILD-TYPE 60 70 74
'OR5AK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S11834.  Gene #1157: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR5AK2 MUTATED 0 4 4
OR5AK2 WILD-TYPE 70 116 96
'OR5AK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S11835.  Gene #1157: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR5AK2 MUTATED 0 0 1 1 2 3 0 0 1
OR5AK2 WILD-TYPE 41 26 29 28 37 66 20 14 21
'OR5AK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S11836.  Gene #1157: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR5AK2 MUTATED 2 1 3 3
OR5AK2 WILD-TYPE 98 71 69 118
'OR5AK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S11837.  Gene #1157: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR5AK2 MUTATED 0 3 3 1 2
OR5AK2 WILD-TYPE 59 72 71 118 36
'OR5AK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S11838.  Gene #1157: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR5AK2 MUTATED 2 3 0 1 3
OR5AK2 WILD-TYPE 49 73 61 70 92
'OR5AK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.083 (Fisher's exact test), Q value = 0.31

Table S11839.  Gene #1157: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR5AK2 MUTATED 2 1 0 0 1 3 0 2 0
OR5AK2 WILD-TYPE 67 47 39 16 52 17 21 36 50
'OR5AK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S11840.  Gene #1157: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR5AK2 MUTATED 1 0 1 0 1 1
OR5AK2 WILD-TYPE 12 16 13 11 10 8
'OR5AK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.92

Table S11841.  Gene #1157: 'OR5AK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR5AK2 MUTATED 0 0 0 0 1 0 1 1 1
OR5AK2 WILD-TYPE 11 7 7 9 7 7 10 8 4
'NTRK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.28

Table S11842.  Gene #1158: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NTRK2 MUTATED 0 1 0 2 0
NTRK2 WILD-TYPE 32 17 46 25 23
'NTRK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S11843.  Gene #1158: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NTRK2 MUTATED 1 2 0
NTRK2 WILD-TYPE 42 65 36
'NTRK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S11844.  Gene #1158: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NTRK2 MUTATED 3 8 11
NTRK2 WILD-TYPE 39 165 136
'NTRK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.78

Table S11845.  Gene #1158: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NTRK2 MUTATED 8 7 5
NTRK2 WILD-TYPE 54 66 70
'NTRK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S11846.  Gene #1158: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NTRK2 MUTATED 4 9 9
NTRK2 WILD-TYPE 66 111 91
'NTRK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.93

Table S11847.  Gene #1158: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NTRK2 MUTATED 2 1 1 5 3 5 1 1 3
NTRK2 WILD-TYPE 39 25 29 24 36 64 19 13 19
'NTRK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0525 (Fisher's exact test), Q value = 0.25

Table S11848.  Gene #1158: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NTRK2 MUTATED 7 4 9 3
NTRK2 WILD-TYPE 93 68 63 118
'NTRK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0765 (Fisher's exact test), Q value = 0.3

Table S11849.  Gene #1158: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NTRK2 MUTATED 7 5 7 3 1
NTRK2 WILD-TYPE 52 70 67 116 37
'NTRK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 0.22

Table S11850.  Gene #1158: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NTRK2 MUTATED 2 7 8 1 4
NTRK2 WILD-TYPE 49 69 53 70 91

Figure S3175.  Get High-res Image Gene #1158: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NTRK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S11851.  Gene #1158: 'NTRK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NTRK2 MUTATED 3 7 1 2 4 2 1 1 1
NTRK2 WILD-TYPE 66 41 38 14 49 18 20 37 49
'SMARCB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S11852.  Gene #1159: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SMARCB1 MUTATED 0 0 2 1 0
SMARCB1 WILD-TYPE 32 18 44 26 23
'SMARCB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.92

Table S11853.  Gene #1159: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SMARCB1 MUTATED 0 2 1
SMARCB1 WILD-TYPE 43 65 35
'SMARCB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.64

Table S11854.  Gene #1159: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SMARCB1 MUTATED 2 8 13
SMARCB1 WILD-TYPE 40 165 134
'SMARCB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.99

Table S11855.  Gene #1159: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SMARCB1 MUTATED 4 8 8
SMARCB1 WILD-TYPE 58 65 67
'SMARCB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S11856.  Gene #1159: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SMARCB1 MUTATED 2 8 9
SMARCB1 WILD-TYPE 68 112 91
'SMARCB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S11857.  Gene #1159: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SMARCB1 MUTATED 1 1 1 1 2 9 2 1 1
SMARCB1 WILD-TYPE 40 25 29 28 37 60 18 13 21
'SMARCB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00515 (Fisher's exact test), Q value = 0.067

Table S11858.  Gene #1159: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SMARCB1 MUTATED 8 10 3 2
SMARCB1 WILD-TYPE 92 62 69 119

Figure S3176.  Get High-res Image Gene #1159: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SMARCB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S11859.  Gene #1159: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SMARCB1 MUTATED 2 9 8 4 0
SMARCB1 WILD-TYPE 57 66 66 115 38

Figure S3177.  Get High-res Image Gene #1159: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S11860.  Gene #1159: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SMARCB1 MUTATED 6 8 2 2 4
SMARCB1 WILD-TYPE 45 68 59 69 91
'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0791 (Fisher's exact test), Q value = 0.31

Table S11861.  Gene #1159: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SMARCB1 MUTATED 7 4 1 3 2 3 0 1 1
SMARCB1 WILD-TYPE 62 44 38 13 51 17 21 37 49
'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S11862.  Gene #1159: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SMARCB1 MUTATED 0 0 1 1 0 1
SMARCB1 WILD-TYPE 13 16 13 10 11 8
'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.76

Table S11863.  Gene #1159: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SMARCB1 MUTATED 0 0 1 0 0 1 0 1 0
SMARCB1 WILD-TYPE 11 7 6 9 8 6 11 8 5
'ERCC6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S11864.  Gene #1160: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ERCC6 MUTATED 4 0 1 2 0
ERCC6 WILD-TYPE 28 18 45 25 23
'ERCC6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0346 (Fisher's exact test), Q value = 0.2

Table S11865.  Gene #1160: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ERCC6 MUTATED 5 2 0
ERCC6 WILD-TYPE 38 65 36

Figure S3178.  Get High-res Image Gene #1160: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ERCC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00047 (Fisher's exact test), Q value = 0.015

Table S11866.  Gene #1160: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ERCC6 MUTATED 0 7 21
ERCC6 WILD-TYPE 42 166 126

Figure S3179.  Get High-res Image Gene #1160: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ERCC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S11867.  Gene #1160: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ERCC6 MUTATED 7 4 9
ERCC6 WILD-TYPE 55 69 66
'ERCC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S11868.  Gene #1160: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ERCC6 MUTATED 3 10 9
ERCC6 WILD-TYPE 67 110 91
'ERCC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S11869.  Gene #1160: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ERCC6 MUTATED 3 1 2 4 1 7 1 1 2
ERCC6 WILD-TYPE 38 25 28 25 38 62 19 13 20
'ERCC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S11870.  Gene #1160: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ERCC6 MUTATED 5 9 5 9
ERCC6 WILD-TYPE 95 63 67 112
'ERCC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00366 (Fisher's exact test), Q value = 0.054

Table S11871.  Gene #1160: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ERCC6 MUTATED 2 6 11 3 6
ERCC6 WILD-TYPE 57 69 63 116 32

Figure S3180.  Get High-res Image Gene #1160: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ERCC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 0.29

Table S11872.  Gene #1160: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ERCC6 MUTATED 2 9 6 1 9
ERCC6 WILD-TYPE 49 67 55 70 86
'ERCC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0763 (Fisher's exact test), Q value = 0.3

Table S11873.  Gene #1160: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ERCC6 MUTATED 7 3 0 3 5 1 0 6 2
ERCC6 WILD-TYPE 62 45 39 13 48 19 21 32 48
'ERCC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S11874.  Gene #1160: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ERCC6 MUTATED 0 0 2 1 1 0
ERCC6 WILD-TYPE 13 16 12 10 10 9
'ERCC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S11875.  Gene #1160: 'ERCC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ERCC6 MUTATED 0 0 1 1 2 0 0 0 0
ERCC6 WILD-TYPE 11 7 6 8 6 7 11 9 5
'RARG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S11876.  Gene #1161: 'RARG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RARG MUTATED 4 0 2 0 0
RARG WILD-TYPE 28 18 44 27 23
'RARG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S11877.  Gene #1161: 'RARG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RARG MUTATED 3 1 2
RARG WILD-TYPE 40 66 34
'RARG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S11878.  Gene #1161: 'RARG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RARG MUTATED 2 2 6
RARG WILD-TYPE 40 171 141
'RARG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S11879.  Gene #1161: 'RARG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RARG MUTATED 0 1 3
RARG WILD-TYPE 62 72 72
'RARG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S11880.  Gene #1161: 'RARG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RARG MUTATED 4 2 1
RARG WILD-TYPE 66 118 99
'RARG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S11881.  Gene #1161: 'RARG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RARG MUTATED 1 0 1 1 2 1 0 1 0
RARG WILD-TYPE 40 26 29 28 37 68 20 13 22
'RARG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S11882.  Gene #1161: 'RARG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RARG MUTATED 2 3 0 5
RARG WILD-TYPE 98 69 72 116
'RARG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.58

Table S11883.  Gene #1161: 'RARG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RARG MUTATED 0 2 2 3 3
RARG WILD-TYPE 59 73 72 116 35
'RARG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.55

Table S11884.  Gene #1161: 'RARG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RARG MUTATED 0 4 0 3 3
RARG WILD-TYPE 51 72 61 68 92
'RARG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S11885.  Gene #1161: 'RARG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RARG MUTATED 2 0 1 1 2 1 0 2 1
RARG WILD-TYPE 67 48 38 15 51 19 21 36 49
'HEPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 0.18

Table S11886.  Gene #1162: 'HEPH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HEPH MUTATED 1 3 11
HEPH WILD-TYPE 41 170 136

Figure S3181.  Get High-res Image Gene #1162: 'HEPH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HEPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S11887.  Gene #1162: 'HEPH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HEPH MUTATED 4 2 8
HEPH WILD-TYPE 58 71 67
'HEPH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S11888.  Gene #1162: 'HEPH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HEPH MUTATED 3 3 7
HEPH WILD-TYPE 67 117 93
'HEPH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S11889.  Gene #1162: 'HEPH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HEPH MUTATED 1 0 0 1 1 6 2 0 2
HEPH WILD-TYPE 40 26 30 28 38 63 18 14 20
'HEPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00721 (Fisher's exact test), Q value = 0.08

Table S11890.  Gene #1162: 'HEPH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HEPH MUTATED 3 8 3 1
HEPH WILD-TYPE 97 64 69 120

Figure S3182.  Get High-res Image Gene #1162: 'HEPH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HEPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00924 (Fisher's exact test), Q value = 0.09

Table S11891.  Gene #1162: 'HEPH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HEPH MUTATED 3 5 6 0 1
HEPH WILD-TYPE 56 70 68 119 37

Figure S3183.  Get High-res Image Gene #1162: 'HEPH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HEPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.11

Table S11892.  Gene #1162: 'HEPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HEPH MUTATED 3 8 1 1 1
HEPH WILD-TYPE 48 68 60 70 94

Figure S3184.  Get High-res Image Gene #1162: 'HEPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HEPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0794 (Fisher's exact test), Q value = 0.31

Table S11893.  Gene #1162: 'HEPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HEPH MUTATED 4 3 0 3 3 0 0 0 1
HEPH WILD-TYPE 65 45 39 13 50 20 21 38 49
'RASGRF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.29

Table S11894.  Gene #1163: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RASGRF2 MUTATED 3 0 0 2 0
RASGRF2 WILD-TYPE 29 18 46 25 23
'RASGRF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.067 (Fisher's exact test), Q value = 0.28

Table S11895.  Gene #1163: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RASGRF2 MUTATED 4 1 0
RASGRF2 WILD-TYPE 39 66 36
'RASGRF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.096

Table S11896.  Gene #1163: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RASGRF2 MUTATED 0 4 13
RASGRF2 WILD-TYPE 42 169 134

Figure S3185.  Get High-res Image Gene #1163: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RASGRF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S11897.  Gene #1163: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RASGRF2 MUTATED 7 2 3
RASGRF2 WILD-TYPE 55 71 72
'RASGRF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.097

Table S11898.  Gene #1163: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RASGRF2 MUTATED 0 5 10
RASGRF2 WILD-TYPE 70 115 90

Figure S3186.  Get High-res Image Gene #1163: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RASGRF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S11899.  Gene #1163: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RASGRF2 MUTATED 1 1 2 1 0 8 1 1 0
RASGRF2 WILD-TYPE 40 25 28 28 39 61 19 13 22
'RASGRF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.75

Table S11900.  Gene #1163: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RASGRF2 MUTATED 2 5 4 6
RASGRF2 WILD-TYPE 98 67 68 115
'RASGRF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S11901.  Gene #1163: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RASGRF2 MUTATED 3 3 5 2 4
RASGRF2 WILD-TYPE 56 72 69 117 34
'RASGRF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0696 (Fisher's exact test), Q value = 0.28

Table S11902.  Gene #1163: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RASGRF2 MUTATED 0 7 2 1 6
RASGRF2 WILD-TYPE 51 69 59 70 89
'RASGRF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S11903.  Gene #1163: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RASGRF2 MUTATED 3 5 0 2 0 1 1 2 2
RASGRF2 WILD-TYPE 66 43 39 14 53 19 20 36 48
'LCN9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S11904.  Gene #1164: 'LCN9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LCN9 MUTATED 0 1 3
LCN9 WILD-TYPE 42 172 144
'LCN9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11905.  Gene #1164: 'LCN9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LCN9 MUTATED 1 1 1
LCN9 WILD-TYPE 61 72 74
'LCN9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11906.  Gene #1164: 'LCN9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LCN9 MUTATED 1 1 1 1
LCN9 WILD-TYPE 99 71 71 120
'LCN9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11907.  Gene #1164: 'LCN9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LCN9 MUTATED 1 1 1 1 0
LCN9 WILD-TYPE 58 74 73 118 38
'LCN9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S11908.  Gene #1164: 'LCN9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LCN9 MUTATED 0 1 1 2 0
LCN9 WILD-TYPE 51 75 60 69 95
'LCN9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S11909.  Gene #1164: 'LCN9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LCN9 MUTATED 2 1 0 0 1 0 0 0 0
LCN9 WILD-TYPE 67 47 39 16 52 20 21 38 50
'DST MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S11910.  Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DST MUTATED 7 2 1 3 0
DST WILD-TYPE 25 16 45 24 23

Figure S3187.  Get High-res Image Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DST MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.23

Table S11911.  Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DST MUTATED 8 3 2
DST WILD-TYPE 35 64 34

Figure S3188.  Get High-res Image Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DST MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S11912.  Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DST MUTATED 2 20 43
DST WILD-TYPE 40 153 104

Figure S3189.  Get High-res Image Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DST MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S11913.  Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DST MUTATED 19 13 20
DST WILD-TYPE 43 60 55
'DST MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S11914.  Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DST MUTATED 11 19 25
DST WILD-TYPE 59 101 75
'DST MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S11915.  Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DST MUTATED 11 3 3 6 4 18 5 3 2
DST WILD-TYPE 30 23 27 23 35 51 15 11 20
'DST MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00198 (Fisher's exact test), Q value = 0.038

Table S11916.  Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DST MUTATED 11 19 21 15
DST WILD-TYPE 89 53 51 106

Figure S3190.  Get High-res Image Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DST MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S11917.  Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DST MUTATED 7 13 28 9 9
DST WILD-TYPE 52 62 46 110 29

Figure S3191.  Get High-res Image Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DST MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0396 (Fisher's exact test), Q value = 0.21

Table S11918.  Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DST MUTATED 13 20 12 7 13
DST WILD-TYPE 38 56 49 64 82

Figure S3192.  Get High-res Image Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DST MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S11919.  Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DST MUTATED 10 14 5 6 10 4 3 8 5
DST WILD-TYPE 59 34 34 10 43 16 18 30 45
'DST MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S11920.  Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DST MUTATED 2 3 2 3 6 1
DST WILD-TYPE 11 13 12 8 5 8
'DST MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S11921.  Gene #1165: 'DST MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DST MUTATED 2 1 1 4 1 1 6 0 1
DST WILD-TYPE 9 6 6 5 7 6 5 9 4
'FBXO38 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S11922.  Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FBXO38 MUTATED 2 0 1 1 0
FBXO38 WILD-TYPE 30 18 45 26 23
'FBXO38 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S11923.  Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FBXO38 MUTATED 3 1 0
FBXO38 WILD-TYPE 40 66 36
'FBXO38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00454 (Fisher's exact test), Q value = 0.062

Table S11924.  Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FBXO38 MUTATED 1 3 14
FBXO38 WILD-TYPE 41 170 133

Figure S3193.  Get High-res Image Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FBXO38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.21

Table S11925.  Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FBXO38 MUTATED 7 1 6
FBXO38 WILD-TYPE 55 72 69

Figure S3194.  Get High-res Image Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FBXO38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.2

Table S11926.  Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FBXO38 MUTATED 1 3 9
FBXO38 WILD-TYPE 69 117 91

Figure S3195.  Get High-res Image Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FBXO38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S11927.  Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FBXO38 MUTATED 1 0 0 2 2 8 0 0 0
FBXO38 WILD-TYPE 40 26 30 27 37 61 20 14 22
'FBXO38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S11928.  Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FBXO38 MUTATED 2 6 6 4
FBXO38 WILD-TYPE 98 66 66 117
'FBXO38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00577 (Fisher's exact test), Q value = 0.072

Table S11929.  Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FBXO38 MUTATED 2 3 9 1 3
FBXO38 WILD-TYPE 57 72 65 118 35

Figure S3196.  Get High-res Image Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBXO38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00409 (Fisher's exact test), Q value = 0.058

Table S11930.  Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FBXO38 MUTATED 0 10 3 1 3
FBXO38 WILD-TYPE 51 66 58 70 92

Figure S3197.  Get High-res Image Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FBXO38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.95

Table S11931.  Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FBXO38 MUTATED 4 4 1 2 2 1 0 2 1
FBXO38 WILD-TYPE 65 44 38 14 51 19 21 36 49
'FBXO38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0874 (Fisher's exact test), Q value = 0.32

Table S11932.  Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FBXO38 MUTATED 1 0 2 0 3 0
FBXO38 WILD-TYPE 12 16 12 11 8 9
'FBXO38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S11933.  Gene #1166: 'FBXO38 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FBXO38 MUTATED 0 0 0 0 2 1 2 1 0
FBXO38 WILD-TYPE 11 7 7 9 6 6 9 8 5
'STAT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S11934.  Gene #1167: 'STAT3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STAT3 MUTATED 0 4 5
STAT3 WILD-TYPE 42 169 142
'STAT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S11935.  Gene #1167: 'STAT3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STAT3 MUTATED 3 2 3
STAT3 WILD-TYPE 59 71 72
'STAT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S11936.  Gene #1167: 'STAT3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STAT3 MUTATED 2 4 2
STAT3 WILD-TYPE 68 116 98
'STAT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S11937.  Gene #1167: 'STAT3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STAT3 MUTATED 1 1 1 2 0 1 2 0 0
STAT3 WILD-TYPE 40 25 29 27 39 68 18 14 22
'STAT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S11938.  Gene #1167: 'STAT3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STAT3 MUTATED 3 0 4 2
STAT3 WILD-TYPE 97 72 68 119
'STAT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S11939.  Gene #1167: 'STAT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STAT3 MUTATED 1 2 4 2 0
STAT3 WILD-TYPE 58 73 70 117 38
'STAT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.26

Table S11940.  Gene #1167: 'STAT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STAT3 MUTATED 3 4 0 0 2
STAT3 WILD-TYPE 48 72 61 71 93
'STAT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.95

Table S11941.  Gene #1167: 'STAT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STAT3 MUTATED 3 2 0 1 1 1 0 0 1
STAT3 WILD-TYPE 66 46 39 15 52 19 21 38 49
'STAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.95

Table S11942.  Gene #1167: 'STAT3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
STAT3 MUTATED 0 1 1 1 2 0
STAT3 WILD-TYPE 13 15 13 10 9 9
'STAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.55

Table S11943.  Gene #1167: 'STAT3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
STAT3 MUTATED 0 0 0 1 1 0 3 0 0
STAT3 WILD-TYPE 11 7 7 8 7 7 8 9 5
'ATP11C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00868 (Fisher's exact test), Q value = 0.088

Table S11944.  Gene #1168: 'ATP11C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATP11C MUTATED 5 0 0 2 0
ATP11C WILD-TYPE 27 18 46 25 23

Figure S3198.  Get High-res Image Gene #1168: 'ATP11C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATP11C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S11945.  Gene #1168: 'ATP11C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATP11C MUTATED 4 2 1
ATP11C WILD-TYPE 39 65 35
'ATP11C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.19

Table S11946.  Gene #1168: 'ATP11C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATP11C MUTATED 1 7 16
ATP11C WILD-TYPE 41 166 131

Figure S3199.  Get High-res Image Gene #1168: 'ATP11C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP11C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S11947.  Gene #1168: 'ATP11C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATP11C MUTATED 7 3 8
ATP11C WILD-TYPE 55 70 67
'ATP11C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.14

Table S11948.  Gene #1168: 'ATP11C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATP11C MUTATED 1 6 12
ATP11C WILD-TYPE 69 114 88

Figure S3200.  Get High-res Image Gene #1168: 'ATP11C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ATP11C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S11949.  Gene #1168: 'ATP11C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATP11C MUTATED 2 1 2 1 1 9 2 0 1
ATP11C WILD-TYPE 39 25 28 28 38 60 18 14 21
'ATP11C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.61

Table S11950.  Gene #1168: 'ATP11C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATP11C MUTATED 4 8 6 7
ATP11C WILD-TYPE 96 64 66 114
'ATP11C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0632 (Fisher's exact test), Q value = 0.27

Table S11951.  Gene #1168: 'ATP11C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATP11C MUTATED 3 6 9 3 4
ATP11C WILD-TYPE 56 69 65 116 34
'ATP11C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0785 (Fisher's exact test), Q value = 0.3

Table S11952.  Gene #1168: 'ATP11C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATP11C MUTATED 2 11 3 3 4
ATP11C WILD-TYPE 49 65 58 68 91
'ATP11C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.66

Table S11953.  Gene #1168: 'ATP11C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATP11C MUTATED 7 4 0 2 4 2 0 2 2
ATP11C WILD-TYPE 62 44 39 14 49 18 21 36 48
'ATP11C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0619 (Fisher's exact test), Q value = 0.27

Table S11954.  Gene #1168: 'ATP11C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ATP11C MUTATED 1 2 0 0 4 1
ATP11C WILD-TYPE 12 14 14 11 7 8
'ATP11C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S11955.  Gene #1168: 'ATP11C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ATP11C MUTATED 2 1 0 2 0 1 2 0 0
ATP11C WILD-TYPE 9 6 7 7 8 6 9 9 5
'IRF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S11956.  Gene #1169: 'IRF6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IRF6 MUTATED 1 1 4
IRF6 WILD-TYPE 41 172 143
'IRF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S11957.  Gene #1169: 'IRF6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IRF6 MUTATED 2 0 2
IRF6 WILD-TYPE 60 73 73
'IRF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.96

Table S11958.  Gene #1169: 'IRF6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IRF6 MUTATED 2 3 1
IRF6 WILD-TYPE 68 117 99
'IRF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.8

Table S11959.  Gene #1169: 'IRF6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IRF6 MUTATED 0 1 0 1 1 1 0 1 1
IRF6 WILD-TYPE 41 25 30 28 38 68 20 13 21
'IRF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.75

Table S11960.  Gene #1169: 'IRF6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IRF6 MUTATED 0 2 1 3
IRF6 WILD-TYPE 100 70 71 118
'IRF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.54

Table S11961.  Gene #1169: 'IRF6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IRF6 MUTATED 0 1 2 1 2
IRF6 WILD-TYPE 59 74 72 118 36
'IRF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S11962.  Gene #1169: 'IRF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IRF6 MUTATED 1 1 1 0 2
IRF6 WILD-TYPE 50 75 60 71 93
'IRF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S11963.  Gene #1169: 'IRF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IRF6 MUTATED 1 0 0 1 1 0 0 1 1
IRF6 WILD-TYPE 68 48 39 15 52 20 21 37 49
'DNAJC11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0546 (Fisher's exact test), Q value = 0.25

Table S11964.  Gene #1170: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DNAJC11 MUTATED 3 0 0 0 0
DNAJC11 WILD-TYPE 29 18 46 27 23
'DNAJC11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S11965.  Gene #1170: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DNAJC11 MUTATED 2 0 1
DNAJC11 WILD-TYPE 41 67 35
'DNAJC11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S11966.  Gene #1170: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DNAJC11 MUTATED 1 2 6
DNAJC11 WILD-TYPE 41 171 141
'DNAJC11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11967.  Gene #1170: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DNAJC11 MUTATED 1 2 2
DNAJC11 WILD-TYPE 61 71 73
'DNAJC11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11968.  Gene #1170: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DNAJC11 MUTATED 1 3 2
DNAJC11 WILD-TYPE 69 117 98
'DNAJC11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S11969.  Gene #1170: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DNAJC11 MUTATED 0 0 1 0 0 2 2 1 0
DNAJC11 WILD-TYPE 41 26 29 29 39 67 18 13 22
'DNAJC11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S11970.  Gene #1170: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DNAJC11 MUTATED 3 1 1 4
DNAJC11 WILD-TYPE 97 71 71 117
'DNAJC11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0701 (Fisher's exact test), Q value = 0.29

Table S11971.  Gene #1170: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DNAJC11 MUTATED 0 3 2 1 3
DNAJC11 WILD-TYPE 59 72 72 118 35
'DNAJC11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.86

Table S11972.  Gene #1170: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DNAJC11 MUTATED 2 3 0 1 3
DNAJC11 WILD-TYPE 49 73 61 70 92
'DNAJC11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0369 (Fisher's exact test), Q value = 0.2

Table S11973.  Gene #1170: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DNAJC11 MUTATED 0 0 2 1 3 0 0 3 0
DNAJC11 WILD-TYPE 69 48 37 15 50 20 21 35 50

Figure S3201.  Get High-res Image Gene #1170: 'DNAJC11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CLDN10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0875 (Fisher's exact test), Q value = 0.32

Table S11974.  Gene #1171: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CLDN10 MUTATED 2 2 7
CLDN10 WILD-TYPE 40 171 140
'CLDN10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S11975.  Gene #1171: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CLDN10 MUTATED 5 1 4
CLDN10 WILD-TYPE 57 72 71
'CLDN10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.76

Table S11976.  Gene #1171: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CLDN10 MUTATED 1 6 3
CLDN10 WILD-TYPE 69 114 97
'CLDN10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S11977.  Gene #1171: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CLDN10 MUTATED 0 2 0 3 1 3 1 0 0
CLDN10 WILD-TYPE 41 24 30 26 38 66 19 14 22
'CLDN10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.73

Table S11978.  Gene #1171: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CLDN10 MUTATED 2 4 3 2
CLDN10 WILD-TYPE 98 68 69 119
'CLDN10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S11979.  Gene #1171: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CLDN10 MUTATED 0 3 5 2 1
CLDN10 WILD-TYPE 59 72 69 117 37
'CLDN10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.53

Table S11980.  Gene #1171: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CLDN10 MUTATED 2 5 0 1 3
CLDN10 WILD-TYPE 49 71 61 70 92
'CLDN10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S11981.  Gene #1171: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CLDN10 MUTATED 3 1 1 2 0 1 0 2 1
CLDN10 WILD-TYPE 66 47 38 14 53 19 21 36 49
'CLDN10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00635 (Fisher's exact test), Q value = 0.075

Table S11982.  Gene #1171: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CLDN10 MUTATED 0 0 0 0 3 0
CLDN10 WILD-TYPE 13 16 14 11 8 9

Figure S3202.  Get High-res Image Gene #1171: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CLDN10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S11983.  Gene #1171: 'CLDN10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CLDN10 MUTATED 0 0 0 1 1 1 0 0 0
CLDN10 WILD-TYPE 11 7 7 8 7 6 11 9 5
'IGSF5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S11984.  Gene #1172: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IGSF5 MUTATED 4 0 2 1 0
IGSF5 WILD-TYPE 28 18 44 26 23
'IGSF5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0211 (Fisher's exact test), Q value = 0.15

Table S11985.  Gene #1172: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IGSF5 MUTATED 4 0 3
IGSF5 WILD-TYPE 39 67 33

Figure S3203.  Get High-res Image Gene #1172: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IGSF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S11986.  Gene #1172: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IGSF5 MUTATED 1 2 10
IGSF5 WILD-TYPE 41 171 137

Figure S3204.  Get High-res Image Gene #1172: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IGSF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.24

Table S11987.  Gene #1172: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IGSF5 MUTATED 2 0 5
IGSF5 WILD-TYPE 60 73 70

Figure S3205.  Get High-res Image Gene #1172: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'IGSF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S11988.  Gene #1172: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IGSF5 MUTATED 2 3 6
IGSF5 WILD-TYPE 68 117 94
'IGSF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S11989.  Gene #1172: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IGSF5 MUTATED 1 1 0 1 2 4 2 0 0
IGSF5 WILD-TYPE 40 25 30 28 37 65 18 14 22
'IGSF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S11990.  Gene #1172: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IGSF5 MUTATED 1 5 2 6
IGSF5 WILD-TYPE 99 67 70 115
'IGSF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S11991.  Gene #1172: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IGSF5 MUTATED 1 1 4 4 4
IGSF5 WILD-TYPE 58 74 70 115 34
'IGSF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S11992.  Gene #1172: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IGSF5 MUTATED 0 5 1 1 5
IGSF5 WILD-TYPE 51 71 60 70 90
'IGSF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0822 (Fisher's exact test), Q value = 0.31

Table S11993.  Gene #1172: 'IGSF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IGSF5 MUTATED 2 1 0 2 4 0 0 3 0
IGSF5 WILD-TYPE 67 47 39 14 49 20 21 35 50
'PCSK5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.46

Table S11994.  Gene #1173: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PCSK5 MUTATED 2 1 0 2 0
PCSK5 WILD-TYPE 30 17 46 25 23
'PCSK5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S11995.  Gene #1173: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PCSK5 MUTATED 3 1 1
PCSK5 WILD-TYPE 40 66 35
'PCSK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S11996.  Gene #1173: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PCSK5 MUTATED 0 5 9
PCSK5 WILD-TYPE 42 168 138
'PCSK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S11997.  Gene #1173: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PCSK5 MUTATED 3 3 2
PCSK5 WILD-TYPE 59 70 73
'PCSK5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.11

Table S11998.  Gene #1173: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PCSK5 MUTATED 0 4 9
PCSK5 WILD-TYPE 70 116 91

Figure S3206.  Get High-res Image Gene #1173: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PCSK5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.91

Table S11999.  Gene #1173: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PCSK5 MUTATED 1 1 2 1 1 7 0 0 0
PCSK5 WILD-TYPE 40 25 28 28 38 62 20 14 22
'PCSK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S12000.  Gene #1173: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PCSK5 MUTATED 3 4 2 5
PCSK5 WILD-TYPE 97 68 70 116
'PCSK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.94

Table S12001.  Gene #1173: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PCSK5 MUTATED 2 3 3 3 3
PCSK5 WILD-TYPE 57 72 71 116 35
'PCSK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S12002.  Gene #1173: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PCSK5 MUTATED 2 2 4 1 4
PCSK5 WILD-TYPE 49 74 57 70 91
'PCSK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0645 (Fisher's exact test), Q value = 0.27

Table S12003.  Gene #1173: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PCSK5 MUTATED 2 1 1 2 1 3 1 2 0
PCSK5 WILD-TYPE 67 47 38 14 52 17 20 36 50
'PCSK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S12004.  Gene #1173: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PCSK5 MUTATED 1 0 0 1 1 0
PCSK5 WILD-TYPE 12 16 14 10 10 9
'PCSK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.92

Table S12005.  Gene #1173: 'PCSK5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PCSK5 MUTATED 0 0 0 1 0 1 0 1 0
PCSK5 WILD-TYPE 11 7 7 8 8 6 11 8 5
'DDHD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0541 (Fisher's exact test), Q value = 0.25

Table S12006.  Gene #1174: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DDHD2 MUTATED 3 0 0 0 0
DDHD2 WILD-TYPE 29 18 46 27 23
'DDHD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S12007.  Gene #1174: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DDHD2 MUTATED 3 0 0
DDHD2 WILD-TYPE 40 67 36

Figure S3207.  Get High-res Image Gene #1174: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DDHD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 0.22

Table S12008.  Gene #1174: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DDHD2 MUTATED 2 1 6
DDHD2 WILD-TYPE 40 172 141

Figure S3208.  Get High-res Image Gene #1174: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DDHD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S12009.  Gene #1174: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DDHD2 MUTATED 1 3 2
DDHD2 WILD-TYPE 61 70 73
'DDHD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.56

Table S12010.  Gene #1174: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DDHD2 MUTATED 0 5 3
DDHD2 WILD-TYPE 70 115 97
'DDHD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S12011.  Gene #1174: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DDHD2 MUTATED 0 0 0 0 2 2 1 1 2
DDHD2 WILD-TYPE 41 26 30 29 37 67 19 13 20
'DDHD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12012.  Gene #1174: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DDHD2 MUTATED 2 2 2 3
DDHD2 WILD-TYPE 98 70 70 118
'DDHD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0289 (Fisher's exact test), Q value = 0.18

Table S12013.  Gene #1174: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DDHD2 MUTATED 1 2 3 0 3
DDHD2 WILD-TYPE 58 73 71 119 35

Figure S3209.  Get High-res Image Gene #1174: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DDHD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S12014.  Gene #1174: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DDHD2 MUTATED 3 2 0 1 3
DDHD2 WILD-TYPE 48 74 61 70 92
'DDHD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S12015.  Gene #1174: 'DDHD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DDHD2 MUTATED 3 0 1 1 1 0 0 3 0
DDHD2 WILD-TYPE 66 48 38 15 52 20 21 35 50
'SPAG7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S12016.  Gene #1175: 'SPAG7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SPAG7 MUTATED 1 1 1
SPAG7 WILD-TYPE 41 172 146
'SPAG7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S12017.  Gene #1175: 'SPAG7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SPAG7 MUTATED 0 1 2
SPAG7 WILD-TYPE 62 72 73
'SPAG7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S12018.  Gene #1175: 'SPAG7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SPAG7 MUTATED 1 2 0
SPAG7 WILD-TYPE 69 118 100
'SPAG7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0508 (Fisher's exact test), Q value = 0.24

Table S12019.  Gene #1175: 'SPAG7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SPAG7 MUTATED 0 0 0 1 0 0 0 1 1
SPAG7 WILD-TYPE 41 26 30 28 39 69 20 13 21
'SPAG7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S12020.  Gene #1175: 'SPAG7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SPAG7 MUTATED 1 2 0 0
SPAG7 WILD-TYPE 99 70 72 121
'SPAG7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S12021.  Gene #1175: 'SPAG7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SPAG7 MUTATED 1 1 1 0 0
SPAG7 WILD-TYPE 58 74 73 119 38
'SPAG7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S12022.  Gene #1175: 'SPAG7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SPAG7 MUTATED 1 2 0 0 0
SPAG7 WILD-TYPE 50 74 61 71 95
'SPAG7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S12023.  Gene #1175: 'SPAG7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SPAG7 MUTATED 1 0 1 1 0 0 0 0 0
SPAG7 WILD-TYPE 68 48 38 15 53 20 21 38 50
'RARRES3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.15

Table S12024.  Gene #1176: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RARRES3 MUTATED 2 0 3
RARRES3 WILD-TYPE 40 173 144

Figure S3210.  Get High-res Image Gene #1176: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RARRES3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S12025.  Gene #1176: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RARRES3 MUTATED 3 0 1
RARRES3 WILD-TYPE 59 73 74
'RARRES3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S12026.  Gene #1176: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RARRES3 MUTATED 1 1 3
RARRES3 WILD-TYPE 69 119 97
'RARRES3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.993 (Fisher's exact test), Q value = 1

Table S12027.  Gene #1176: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RARRES3 MUTATED 1 0 0 1 1 2 0 0 0
RARRES3 WILD-TYPE 40 26 30 28 38 67 20 14 22
'RARRES3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S12028.  Gene #1176: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RARRES3 MUTATED 1 1 2 1
RARRES3 WILD-TYPE 99 71 70 120
'RARRES3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0667 (Fisher's exact test), Q value = 0.28

Table S12029.  Gene #1176: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RARRES3 MUTATED 2 0 2 0 1
RARRES3 WILD-TYPE 57 75 72 119 37
'RARRES3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.99

Table S12030.  Gene #1176: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RARRES3 MUTATED 1 2 1 0 1
RARRES3 WILD-TYPE 50 74 60 71 94
'RARRES3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 0.98

Table S12031.  Gene #1176: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RARRES3 MUTATED 1 1 0 1 1 0 0 1 0
RARRES3 WILD-TYPE 68 47 39 15 52 20 21 37 50
'TRAF3IP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S12032.  Gene #1177: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRAF3IP1 MUTATED 0 1 5
TRAF3IP1 WILD-TYPE 42 172 142
'TRAF3IP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.21

Table S12033.  Gene #1177: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRAF3IP1 MUTATED 4 0 1
TRAF3IP1 WILD-TYPE 58 73 74

Figure S3211.  Get High-res Image Gene #1177: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TRAF3IP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S12034.  Gene #1177: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRAF3IP1 MUTATED 0 1 4
TRAF3IP1 WILD-TYPE 70 119 96
'TRAF3IP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S12035.  Gene #1177: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRAF3IP1 MUTATED 1 0 1 0 0 3 0 0 0
TRAF3IP1 WILD-TYPE 40 26 29 29 39 66 20 14 22
'TRAF3IP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 0.33

Table S12036.  Gene #1177: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRAF3IP1 MUTATED 0 2 3 1
TRAF3IP1 WILD-TYPE 100 70 69 120
'TRAF3IP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0853 (Fisher's exact test), Q value = 0.32

Table S12037.  Gene #1177: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRAF3IP1 MUTATED 1 0 4 1 0
TRAF3IP1 WILD-TYPE 58 75 70 118 38
'TRAF3IP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S12038.  Gene #1177: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRAF3IP1 MUTATED 0 2 3 0 1
TRAF3IP1 WILD-TYPE 51 74 58 71 94
'TRAF3IP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.94

Table S12039.  Gene #1177: 'TRAF3IP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRAF3IP1 MUTATED 2 2 0 0 1 1 0 0 0
TRAF3IP1 WILD-TYPE 67 46 39 16 52 19 21 38 50
'C14ORF50 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S12040.  Gene #1178: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C14ORF50 MUTATED 1 0 0 2 0
C14ORF50 WILD-TYPE 31 18 46 25 23
'C14ORF50 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S12041.  Gene #1178: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C14ORF50 MUTATED 2 1 0
C14ORF50 WILD-TYPE 41 66 36
'C14ORF50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.098

Table S12042.  Gene #1178: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C14ORF50 MUTATED 0 0 6
C14ORF50 WILD-TYPE 42 173 141

Figure S3212.  Get High-res Image Gene #1178: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C14ORF50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S12043.  Gene #1178: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C14ORF50 MUTATED 0 0 3
C14ORF50 WILD-TYPE 62 73 72
'C14ORF50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S12044.  Gene #1178: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C14ORF50 MUTATED 1 1 2
C14ORF50 WILD-TYPE 69 119 98
'C14ORF50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.94

Table S12045.  Gene #1178: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C14ORF50 MUTATED 0 0 0 1 2 1 0 0 0
C14ORF50 WILD-TYPE 41 26 30 28 37 68 20 14 22
'C14ORF50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S12046.  Gene #1178: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C14ORF50 MUTATED 0 2 1 3
C14ORF50 WILD-TYPE 100 70 71 118
'C14ORF50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0586 (Fisher's exact test), Q value = 0.26

Table S12047.  Gene #1178: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C14ORF50 MUTATED 0 0 3 1 2
C14ORF50 WILD-TYPE 59 75 71 118 36
'C14ORF50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S12048.  Gene #1178: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C14ORF50 MUTATED 0 2 1 0 3
C14ORF50 WILD-TYPE 51 74 60 71 92
'C14ORF50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S12049.  Gene #1178: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C14ORF50 MUTATED 0 1 0 1 1 0 1 2 0
C14ORF50 WILD-TYPE 69 47 39 15 52 20 20 36 50
'ALAS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S12050.  Gene #1179: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ALAS1 MUTATED 2 0 0 1 0
ALAS1 WILD-TYPE 30 18 46 26 23
'ALAS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S12051.  Gene #1179: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ALAS1 MUTATED 2 1 0
ALAS1 WILD-TYPE 41 66 36
'ALAS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.2

Table S12052.  Gene #1179: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ALAS1 MUTATED 1 1 7
ALAS1 WILD-TYPE 41 172 140

Figure S3213.  Get High-res Image Gene #1179: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ALAS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.93

Table S12053.  Gene #1179: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ALAS1 MUTATED 1 1 3
ALAS1 WILD-TYPE 61 72 72
'ALAS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S12054.  Gene #1179: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ALAS1 MUTATED 2 1 2
ALAS1 WILD-TYPE 68 119 98
'ALAS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.75

Table S12055.  Gene #1179: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ALAS1 MUTATED 0 0 2 0 0 2 0 0 1
ALAS1 WILD-TYPE 41 26 28 29 39 67 20 14 21
'ALAS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S12056.  Gene #1179: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ALAS1 MUTATED 1 2 2 4
ALAS1 WILD-TYPE 99 70 70 117
'ALAS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0663 (Fisher's exact test), Q value = 0.28

Table S12057.  Gene #1179: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ALAS1 MUTATED 0 2 3 1 3
ALAS1 WILD-TYPE 59 73 71 118 35
'ALAS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S12058.  Gene #1179: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ALAS1 MUTATED 2 2 1 1 3
ALAS1 WILD-TYPE 49 74 60 70 92
'ALAS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0303 (Fisher's exact test), Q value = 0.18

Table S12059.  Gene #1179: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ALAS1 MUTATED 0 1 1 2 1 1 0 3 0
ALAS1 WILD-TYPE 69 47 38 14 52 19 21 35 50

Figure S3214.  Get High-res Image Gene #1179: 'ALAS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM151A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 0.19

Table S12060.  Gene #1180: 'FAM151A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM151A MUTATED 1 0 5
FAM151A WILD-TYPE 41 173 142

Figure S3215.  Get High-res Image Gene #1180: 'FAM151A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM151A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S12061.  Gene #1180: 'FAM151A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM151A MUTATED 3 0 2
FAM151A WILD-TYPE 59 73 73
'FAM151A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 0.25

Table S12062.  Gene #1180: 'FAM151A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM151A MUTATED 0 1 5
FAM151A WILD-TYPE 70 119 95
'FAM151A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S12063.  Gene #1180: 'FAM151A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM151A MUTATED 1 0 0 0 1 4 0 0 0
FAM151A WILD-TYPE 40 26 30 29 38 65 20 14 22
'FAM151A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 0.34

Table S12064.  Gene #1180: 'FAM151A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM151A MUTATED 0 3 2 1
FAM151A WILD-TYPE 100 69 70 120
'FAM151A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S12065.  Gene #1180: 'FAM151A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM151A MUTATED 1 1 3 0 1
FAM151A WILD-TYPE 58 74 71 119 37
'FAM151A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.077 (Fisher's exact test), Q value = 0.3

Table S12066.  Gene #1180: 'FAM151A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM151A MUTATED 0 4 1 1 0
FAM151A WILD-TYPE 51 72 60 70 95
'FAM151A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.75

Table S12067.  Gene #1180: 'FAM151A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM151A MUTATED 1 2 0 1 2 0 0 0 0
FAM151A WILD-TYPE 68 46 39 15 51 20 21 38 50
'SYNGR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S12068.  Gene #1181: 'SYNGR4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SYNGR4 MUTATED 0 2 4
SYNGR4 WILD-TYPE 42 171 143
'SYNGR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S12069.  Gene #1181: 'SYNGR4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SYNGR4 MUTATED 2 0 2
SYNGR4 WILD-TYPE 60 73 73
'SYNGR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S12070.  Gene #1181: 'SYNGR4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SYNGR4 MUTATED 1 1 4
SYNGR4 WILD-TYPE 69 119 96
'SYNGR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S12071.  Gene #1181: 'SYNGR4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SYNGR4 MUTATED 1 0 0 0 1 4 0 0 0
SYNGR4 WILD-TYPE 40 26 30 29 38 65 20 14 22
'SYNGR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S12072.  Gene #1181: 'SYNGR4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SYNGR4 MUTATED 0 2 2 2
SYNGR4 WILD-TYPE 100 70 70 119
'SYNGR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S12073.  Gene #1181: 'SYNGR4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SYNGR4 MUTATED 0 1 3 1 1
SYNGR4 WILD-TYPE 59 74 71 118 37
'SYNGR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.98

Table S12074.  Gene #1181: 'SYNGR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SYNGR4 MUTATED 0 2 1 0 2
SYNGR4 WILD-TYPE 51 74 60 71 93
'SYNGR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S12075.  Gene #1181: 'SYNGR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SYNGR4 MUTATED 1 2 0 0 0 0 0 0 2
SYNGR4 WILD-TYPE 68 46 39 16 53 20 21 38 48
'ADH7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S12076.  Gene #1182: 'ADH7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ADH7 MUTATED 1 0 0 2 0
ADH7 WILD-TYPE 31 18 46 25 23
'ADH7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S12077.  Gene #1182: 'ADH7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ADH7 MUTATED 1 2 0
ADH7 WILD-TYPE 42 65 36
'ADH7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S12078.  Gene #1182: 'ADH7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ADH7 MUTATED 2 0 4
ADH7 WILD-TYPE 40 173 143

Figure S3216.  Get High-res Image Gene #1182: 'ADH7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADH7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12079.  Gene #1182: 'ADH7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ADH7 MUTATED 1 1 2
ADH7 WILD-TYPE 61 72 73
'ADH7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.27

Table S12080.  Gene #1182: 'ADH7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ADH7 MUTATED 0 6 1
ADH7 WILD-TYPE 70 114 99
'ADH7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0872 (Fisher's exact test), Q value = 0.32

Table S12081.  Gene #1182: 'ADH7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ADH7 MUTATED 0 0 1 1 0 1 1 2 1
ADH7 WILD-TYPE 41 26 29 28 39 68 19 12 21
'ADH7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S12082.  Gene #1182: 'ADH7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ADH7 MUTATED 2 3 0 2
ADH7 WILD-TYPE 98 69 72 119
'ADH7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S12083.  Gene #1182: 'ADH7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ADH7 MUTATED 0 3 1 2 1
ADH7 WILD-TYPE 59 72 73 117 37
'ADH7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S12084.  Gene #1182: 'ADH7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ADH7 MUTATED 1 1 1 0 4
ADH7 WILD-TYPE 50 75 60 71 91
'ADH7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S12085.  Gene #1182: 'ADH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ADH7 MUTATED 0 1 2 0 0 2 0 1 1
ADH7 WILD-TYPE 69 47 37 16 53 18 21 37 49
'KLF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S12086.  Gene #1183: 'KLF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KLF3 MUTATED 0 2 5
KLF3 WILD-TYPE 42 171 142
'KLF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.31

Table S12087.  Gene #1183: 'KLF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KLF3 MUTATED 1 0 4
KLF3 WILD-TYPE 61 73 71
'KLF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S12088.  Gene #1183: 'KLF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KLF3 MUTATED 0 4 1
KLF3 WILD-TYPE 70 116 99
'KLF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S12089.  Gene #1183: 'KLF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KLF3 MUTATED 0 0 1 3 0 1 0 0 0
KLF3 WILD-TYPE 41 26 29 26 39 68 20 14 22
'KLF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0671 (Fisher's exact test), Q value = 0.28

Table S12090.  Gene #1183: 'KLF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KLF3 MUTATED 0 4 1 2
KLF3 WILD-TYPE 100 68 71 119
'KLF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.54

Table S12091.  Gene #1183: 'KLF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KLF3 MUTATED 0 1 4 2 0
KLF3 WILD-TYPE 59 74 70 117 38
'KLF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.92

Table S12092.  Gene #1183: 'KLF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KLF3 MUTATED 0 3 1 2 1
KLF3 WILD-TYPE 51 73 60 69 94
'KLF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S12093.  Gene #1183: 'KLF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KLF3 MUTATED 1 1 0 2 0 0 1 1 1
KLF3 WILD-TYPE 68 47 39 14 53 20 20 37 49
'ARHGAP28 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00793 (Fisher's exact test), Q value = 0.084

Table S12094.  Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ARHGAP28 MUTATED 5 0 0 1 0
ARHGAP28 WILD-TYPE 27 18 46 26 23

Figure S3217.  Get High-res Image Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARHGAP28 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S12095.  Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ARHGAP28 MUTATED 5 1 0
ARHGAP28 WILD-TYPE 38 66 36

Figure S3218.  Get High-res Image Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARHGAP28 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S12096.  Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARHGAP28 MUTATED 0 0 13
ARHGAP28 WILD-TYPE 42 173 134

Figure S3219.  Get High-res Image Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARHGAP28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0831 (Fisher's exact test), Q value = 0.31

Table S12097.  Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARHGAP28 MUTATED 4 0 3
ARHGAP28 WILD-TYPE 58 73 72
'ARHGAP28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S12098.  Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARHGAP28 MUTATED 1 4 7
ARHGAP28 WILD-TYPE 69 116 93
'ARHGAP28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S12099.  Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARHGAP28 MUTATED 1 1 1 1 2 6 0 0 0
ARHGAP28 WILD-TYPE 40 25 29 28 37 63 20 14 22
'ARHGAP28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0615 (Fisher's exact test), Q value = 0.27

Table S12100.  Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARHGAP28 MUTATED 0 4 3 6
ARHGAP28 WILD-TYPE 100 68 69 115
'ARHGAP28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S12101.  Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARHGAP28 MUTATED 0 0 7 1 5
ARHGAP28 WILD-TYPE 59 75 67 118 33

Figure S3220.  Get High-res Image Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGAP28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00153 (Fisher's exact test), Q value = 0.032

Table S12102.  Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARHGAP28 MUTATED 0 7 0 0 6
ARHGAP28 WILD-TYPE 51 69 61 71 89

Figure S3221.  Get High-res Image Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ARHGAP28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00557 (Fisher's exact test), Q value = 0.07

Table S12103.  Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARHGAP28 MUTATED 2 2 0 3 0 1 1 4 0
ARHGAP28 WILD-TYPE 67 46 39 13 53 19 20 34 50

Figure S3222.  Get High-res Image Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARHGAP28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 0.16

Table S12104.  Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ARHGAP28 MUTATED 0 0 2 0 3 0
ARHGAP28 WILD-TYPE 13 16 12 11 8 9

Figure S3223.  Get High-res Image Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ARHGAP28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S12105.  Gene #1184: 'ARHGAP28 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ARHGAP28 MUTATED 0 0 0 2 0 2 1 0 0
ARHGAP28 WILD-TYPE 11 7 7 7 8 5 10 9 5
'SLC38A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.82

Table S12106.  Gene #1185: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC38A5 MUTATED 0 2 4
SLC38A5 WILD-TYPE 42 171 143
'SLC38A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0812 (Fisher's exact test), Q value = 0.31

Table S12107.  Gene #1185: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC38A5 MUTATED 1 0 4
SLC38A5 WILD-TYPE 61 73 71
'SLC38A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12108.  Gene #1185: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC38A5 MUTATED 1 2 1
SLC38A5 WILD-TYPE 69 118 99
'SLC38A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S12109.  Gene #1185: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC38A5 MUTATED 0 0 1 2 0 1 0 0 0
SLC38A5 WILD-TYPE 41 26 29 27 39 68 20 14 22
'SLC38A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.18

Table S12110.  Gene #1185: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC38A5 MUTATED 0 4 1 1
SLC38A5 WILD-TYPE 100 68 71 120

Figure S3224.  Get High-res Image Gene #1185: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC38A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0858 (Fisher's exact test), Q value = 0.32

Table S12111.  Gene #1185: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC38A5 MUTATED 1 0 4 1 0
SLC38A5 WILD-TYPE 58 75 70 118 38
'SLC38A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S12112.  Gene #1185: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC38A5 MUTATED 0 4 1 0 1
SLC38A5 WILD-TYPE 51 72 60 71 94
'SLC38A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S12113.  Gene #1185: 'SLC38A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC38A5 MUTATED 2 1 0 2 1 0 0 0 0
SLC38A5 WILD-TYPE 67 47 39 14 52 20 21 38 50
'HIST1H1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.2

Table S12114.  Gene #1186: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HIST1H1A MUTATED 1 1 7
HIST1H1A WILD-TYPE 41 172 140

Figure S3225.  Get High-res Image Gene #1186: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HIST1H1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12115.  Gene #1186: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HIST1H1A MUTATED 2 2 2
HIST1H1A WILD-TYPE 60 71 73
'HIST1H1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S12116.  Gene #1186: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HIST1H1A MUTATED 3 3 3
HIST1H1A WILD-TYPE 67 117 97
'HIST1H1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S12117.  Gene #1186: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HIST1H1A MUTATED 0 1 2 0 2 2 0 1 1
HIST1H1A WILD-TYPE 41 25 28 29 37 67 20 13 21
'HIST1H1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.34

Table S12118.  Gene #1186: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HIST1H1A MUTATED 1 5 1 2
HIST1H1A WILD-TYPE 99 67 71 119
'HIST1H1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S12119.  Gene #1186: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HIST1H1A MUTATED 1 2 3 1 2
HIST1H1A WILD-TYPE 58 73 71 118 36
'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S12120.  Gene #1186: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HIST1H1A MUTATED 0 1 2 1 5
HIST1H1A WILD-TYPE 51 75 59 70 90
'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S12121.  Gene #1186: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HIST1H1A MUTATED 3 0 0 1 0 0 0 3 2
HIST1H1A WILD-TYPE 66 48 39 15 53 20 21 35 48
'OR7D4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.94

Table S12122.  Gene #1187: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR7D4 MUTATED 1 3 5
OR7D4 WILD-TYPE 41 170 142
'OR7D4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S12123.  Gene #1187: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR7D4 MUTATED 3 3 2
OR7D4 WILD-TYPE 59 70 73
'OR7D4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.56

Table S12124.  Gene #1187: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR7D4 MUTATED 0 5 3
OR7D4 WILD-TYPE 70 115 97
'OR7D4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S12125.  Gene #1187: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR7D4 MUTATED 2 3 0 0 1 1 0 1 0
OR7D4 WILD-TYPE 39 23 30 29 38 68 20 13 22
'OR7D4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S12126.  Gene #1187: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR7D4 MUTATED 4 1 2 2
OR7D4 WILD-TYPE 96 71 70 119
'OR7D4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0508 (Fisher's exact test), Q value = 0.24

Table S12127.  Gene #1187: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR7D4 MUTATED 4 3 0 1 1
OR7D4 WILD-TYPE 55 72 74 118 37
'OR7D4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S12128.  Gene #1187: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR7D4 MUTATED 3 0 2 2 2
OR7D4 WILD-TYPE 48 76 59 69 93
'OR7D4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S12129.  Gene #1187: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR7D4 MUTATED 3 1 3 0 1 0 0 0 1
OR7D4 WILD-TYPE 66 47 36 16 52 20 21 38 49
'OR7D4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S12130.  Gene #1187: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR7D4 MUTATED 1 0 0 1 0 2
OR7D4 WILD-TYPE 12 16 14 10 11 7
'OR7D4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S12131.  Gene #1187: 'OR7D4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR7D4 MUTATED 1 0 0 0 0 0 1 2 0
OR7D4 WILD-TYPE 10 7 7 9 8 7 10 7 5
'OSR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0942 (Fisher's exact test), Q value = 0.33

Table S12132.  Gene #1188: 'OSR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OSR1 MUTATED 1 0 3
OSR1 WILD-TYPE 41 173 144
'OSR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12133.  Gene #1188: 'OSR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OSR1 MUTATED 1 1 2
OSR1 WILD-TYPE 61 72 73
'OSR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12134.  Gene #1188: 'OSR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OSR1 MUTATED 1 1 1
OSR1 WILD-TYPE 69 119 99
'OSR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S12135.  Gene #1188: 'OSR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OSR1 MUTATED 0 0 0 0 0 1 1 0 1
OSR1 WILD-TYPE 41 26 30 29 39 68 19 14 21
'OSR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.21

Table S12136.  Gene #1188: 'OSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OSR1 MUTATED 1 3 0 0
OSR1 WILD-TYPE 99 69 72 121

Figure S3226.  Get High-res Image Gene #1188: 'OSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OSR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S12137.  Gene #1188: 'OSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OSR1 MUTATED 0 2 2 0 0
OSR1 WILD-TYPE 59 73 72 119 38
'OSR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S12138.  Gene #1188: 'OSR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OSR1 MUTATED 1 2 0 1 0
OSR1 WILD-TYPE 50 74 61 70 95
'OSR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S12139.  Gene #1188: 'OSR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OSR1 MUTATED 3 0 0 0 0 1 0 0 0
OSR1 WILD-TYPE 66 48 39 16 53 19 21 38 50
'MAP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00043 (Fisher's exact test), Q value = 0.015

Table S12140.  Gene #1189: 'MAP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MAP2 MUTATED 8 0 0 4 1
MAP2 WILD-TYPE 24 18 46 23 22

Figure S3227.  Get High-res Image Gene #1189: 'MAP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MAP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0435 (Fisher's exact test), Q value = 0.22

Table S12141.  Gene #1189: 'MAP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MAP2 MUTATED 8 3 2
MAP2 WILD-TYPE 35 64 34

Figure S3228.  Get High-res Image Gene #1189: 'MAP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S12142.  Gene #1189: 'MAP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAP2 MUTATED 1 7 27
MAP2 WILD-TYPE 41 166 120

Figure S3229.  Get High-res Image Gene #1189: 'MAP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S12143.  Gene #1189: 'MAP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAP2 MUTATED 9 4 9
MAP2 WILD-TYPE 53 69 66
'MAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.54

Table S12144.  Gene #1189: 'MAP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAP2 MUTATED 10 8 10
MAP2 WILD-TYPE 60 112 90
'MAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S12145.  Gene #1189: 'MAP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAP2 MUTATED 6 1 2 1 3 9 2 3 1
MAP2 WILD-TYPE 35 25 28 28 36 60 18 11 21
'MAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 0.33

Table S12146.  Gene #1189: 'MAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAP2 MUTATED 4 10 8 14
MAP2 WILD-TYPE 96 62 64 107
'MAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00767 (Fisher's exact test), Q value = 0.082

Table S12147.  Gene #1189: 'MAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAP2 MUTATED 4 4 13 7 8
MAP2 WILD-TYPE 55 71 61 112 30

Figure S3230.  Get High-res Image Gene #1189: 'MAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S12148.  Gene #1189: 'MAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAP2 MUTATED 4 11 4 5 11
MAP2 WILD-TYPE 47 65 57 66 84
'MAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S12149.  Gene #1189: 'MAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAP2 MUTATED 6 5 3 3 5 2 3 5 3
MAP2 WILD-TYPE 63 43 36 13 48 18 18 33 47
'MAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S12150.  Gene #1189: 'MAP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAP2 MUTATED 1 2 1 1 4 0
MAP2 WILD-TYPE 12 14 13 10 7 9
'MAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.72

Table S12151.  Gene #1189: 'MAP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAP2 MUTATED 0 1 0 0 2 1 3 1 1
MAP2 WILD-TYPE 11 6 7 9 6 6 8 8 4
'UPF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 0.3

Table S12152.  Gene #1190: 'UPF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
UPF2 MUTATED 3 0 0 2 0
UPF2 WILD-TYPE 29 18 46 25 23
'UPF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0671 (Fisher's exact test), Q value = 0.28

Table S12153.  Gene #1190: 'UPF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
UPF2 MUTATED 4 1 0
UPF2 WILD-TYPE 39 66 36
'UPF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.012

Table S12154.  Gene #1190: 'UPF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UPF2 MUTATED 1 1 14
UPF2 WILD-TYPE 41 172 133

Figure S3231.  Get High-res Image Gene #1190: 'UPF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UPF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S12155.  Gene #1190: 'UPF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UPF2 MUTATED 4 0 6
UPF2 WILD-TYPE 58 73 69

Figure S3232.  Get High-res Image Gene #1190: 'UPF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'UPF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.78

Table S12156.  Gene #1190: 'UPF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UPF2 MUTATED 2 5 7
UPF2 WILD-TYPE 68 115 93
'UPF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S12157.  Gene #1190: 'UPF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UPF2 MUTATED 2 0 1 3 1 4 3 0 0
UPF2 WILD-TYPE 39 26 29 26 38 65 17 14 22
'UPF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0415 (Fisher's exact test), Q value = 0.21

Table S12158.  Gene #1190: 'UPF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UPF2 MUTATED 1 7 4 4
UPF2 WILD-TYPE 99 65 68 117

Figure S3233.  Get High-res Image Gene #1190: 'UPF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'UPF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00795 (Fisher's exact test), Q value = 0.084

Table S12159.  Gene #1190: 'UPF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UPF2 MUTATED 1 3 7 1 4
UPF2 WILD-TYPE 58 72 67 118 34

Figure S3234.  Get High-res Image Gene #1190: 'UPF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UPF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0584 (Fisher's exact test), Q value = 0.26

Table S12160.  Gene #1190: 'UPF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UPF2 MUTATED 1 7 2 0 5
UPF2 WILD-TYPE 50 69 59 71 90
'UPF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S12161.  Gene #1190: 'UPF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UPF2 MUTATED 2 4 0 2 1 0 1 3 2
UPF2 WILD-TYPE 67 44 39 14 52 20 20 35 48
'MFSD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S12162.  Gene #1191: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MFSD6 MUTATED 2 3 2
MFSD6 WILD-TYPE 40 170 145
'MFSD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.91

Table S12163.  Gene #1191: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MFSD6 MUTATED 2 3 1
MFSD6 WILD-TYPE 60 70 74
'MFSD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S12164.  Gene #1191: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MFSD6 MUTATED 1 1 4
MFSD6 WILD-TYPE 69 119 96
'MFSD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S12165.  Gene #1191: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MFSD6 MUTATED 1 0 0 0 0 4 0 1 0
MFSD6 WILD-TYPE 40 26 30 29 39 65 20 13 22
'MFSD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.95

Table S12166.  Gene #1191: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MFSD6 MUTATED 3 1 2 1
MFSD6 WILD-TYPE 97 71 70 120
'MFSD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S12167.  Gene #1191: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MFSD6 MUTATED 1 2 3 0 1
MFSD6 WILD-TYPE 58 73 71 119 37
'MFSD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S12168.  Gene #1191: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MFSD6 MUTATED 1 4 1 0 1
MFSD6 WILD-TYPE 50 72 60 71 94
'MFSD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.74

Table S12169.  Gene #1191: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MFSD6 MUTATED 2 2 1 0 0 1 1 0 0
MFSD6 WILD-TYPE 67 46 38 16 53 19 20 38 50
'MFSD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S12170.  Gene #1191: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MFSD6 MUTATED 2 1 1 0 0 0
MFSD6 WILD-TYPE 11 15 13 11 11 9
'MFSD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S12171.  Gene #1191: 'MFSD6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MFSD6 MUTATED 0 0 0 0 1 0 1 1 1
MFSD6 WILD-TYPE 11 7 7 9 7 7 10 8 4
'CACNA1D MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.48

Table S12172.  Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CACNA1D MUTATED 1 0 0 2 0
CACNA1D WILD-TYPE 31 18 46 25 23
'CACNA1D MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S12173.  Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CACNA1D MUTATED 1 2 0
CACNA1D WILD-TYPE 42 65 36
'CACNA1D MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S12174.  Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CACNA1D MUTATED 2 0 20
CACNA1D WILD-TYPE 40 173 127

Figure S3235.  Get High-res Image Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CACNA1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00161 (Fisher's exact test), Q value = 0.033

Table S12175.  Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CACNA1D MUTATED 7 0 10
CACNA1D WILD-TYPE 55 73 65

Figure S3236.  Get High-res Image Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CACNA1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S12176.  Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CACNA1D MUTATED 3 7 9
CACNA1D WILD-TYPE 67 113 91
'CACNA1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0685 (Fisher's exact test), Q value = 0.28

Table S12177.  Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CACNA1D MUTATED 3 0 3 3 0 8 0 2 0
CACNA1D WILD-TYPE 38 26 27 26 39 61 20 12 22
'CACNA1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.01

Table S12178.  Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CACNA1D MUTATED 0 9 8 5
CACNA1D WILD-TYPE 100 63 64 116

Figure S3237.  Get High-res Image Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CACNA1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S12179.  Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CACNA1D MUTATED 1 2 14 2 3
CACNA1D WILD-TYPE 58 73 60 117 35

Figure S3238.  Get High-res Image Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CACNA1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00336 (Fisher's exact test), Q value = 0.051

Table S12180.  Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CACNA1D MUTATED 1 12 2 1 5
CACNA1D WILD-TYPE 50 64 59 70 90

Figure S3239.  Get High-res Image Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CACNA1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S12181.  Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CACNA1D MUTATED 1 7 0 5 1 3 0 3 1
CACNA1D WILD-TYPE 68 41 39 11 52 17 21 35 49

Figure S3240.  Get High-res Image Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CACNA1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00109 (Fisher's exact test), Q value = 0.026

Table S12182.  Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CACNA1D MUTATED 1 1 1 0 6 0
CACNA1D WILD-TYPE 12 15 13 11 5 9

Figure S3241.  Get High-res Image Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CACNA1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.029 (Fisher's exact test), Q value = 0.18

Table S12183.  Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CACNA1D MUTATED 0 0 0 3 0 1 4 0 1
CACNA1D WILD-TYPE 11 7 7 6 8 6 7 9 4

Figure S3242.  Get High-res Image Gene #1192: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OR9Q1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S12184.  Gene #1193: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR9Q1 MUTATED 0 1 5
OR9Q1 WILD-TYPE 42 172 142
'OR9Q1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S12185.  Gene #1193: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR9Q1 MUTATED 1 1 4
OR9Q1 WILD-TYPE 61 72 71
'OR9Q1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S12186.  Gene #1193: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR9Q1 MUTATED 2 2 1
OR9Q1 WILD-TYPE 68 118 99
'OR9Q1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S12187.  Gene #1193: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR9Q1 MUTATED 0 1 0 0 1 1 1 0 1
OR9Q1 WILD-TYPE 41 25 30 29 38 68 19 14 21
'OR9Q1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0697 (Fisher's exact test), Q value = 0.28

Table S12188.  Gene #1193: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR9Q1 MUTATED 1 3 2 0
OR9Q1 WILD-TYPE 99 69 70 121
'OR9Q1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00474 (Fisher's exact test), Q value = 0.064

Table S12189.  Gene #1193: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR9Q1 MUTATED 0 1 5 0 0
OR9Q1 WILD-TYPE 59 74 69 119 38

Figure S3243.  Get High-res Image Gene #1193: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR9Q1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00336 (Fisher's exact test), Q value = 0.051

Table S12190.  Gene #1193: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR9Q1 MUTATED 1 5 0 0 0
OR9Q1 WILD-TYPE 50 71 61 71 95

Figure S3244.  Get High-res Image Gene #1193: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR9Q1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00244 (Fisher's exact test), Q value = 0.042

Table S12191.  Gene #1193: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR9Q1 MUTATED 1 1 0 3 0 1 0 0 0
OR9Q1 WILD-TYPE 68 47 39 13 53 19 21 38 50

Figure S3245.  Get High-res Image Gene #1193: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OR9Q1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S12192.  Gene #1193: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR9Q1 MUTATED 0 0 1 0 2 0
OR9Q1 WILD-TYPE 13 16 13 11 9 9
'OR9Q1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S12193.  Gene #1193: 'OR9Q1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR9Q1 MUTATED 0 0 0 1 1 1 0 0 0
OR9Q1 WILD-TYPE 11 7 7 8 7 6 11 9 5
'SSRP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.19

Table S12194.  Gene #1194: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SSRP1 MUTATED 0 3 10
SSRP1 WILD-TYPE 42 170 137

Figure S3246.  Get High-res Image Gene #1194: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SSRP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S12195.  Gene #1194: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SSRP1 MUTATED 6 3 3
SSRP1 WILD-TYPE 56 70 72
'SSRP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0761 (Fisher's exact test), Q value = 0.3

Table S12196.  Gene #1194: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SSRP1 MUTATED 1 2 7
SSRP1 WILD-TYPE 69 118 93
'SSRP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S12197.  Gene #1194: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SSRP1 MUTATED 1 1 0 0 0 5 2 1 0
SSRP1 WILD-TYPE 40 25 30 29 39 64 18 13 22
'SSRP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.076 (Fisher's exact test), Q value = 0.3

Table S12198.  Gene #1194: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SSRP1 MUTATED 3 4 5 1
SSRP1 WILD-TYPE 97 68 67 120
'SSRP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0065

Table S12199.  Gene #1194: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SSRP1 MUTATED 0 3 9 0 1
SSRP1 WILD-TYPE 59 72 65 119 37

Figure S3247.  Get High-res Image Gene #1194: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SSRP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0075

Table S12200.  Gene #1194: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SSRP1 MUTATED 1 10 1 0 1
SSRP1 WILD-TYPE 50 66 60 71 94

Figure S3248.  Get High-res Image Gene #1194: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SSRP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S12201.  Gene #1194: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SSRP1 MUTATED 1 3 1 2 3 2 0 1 0
SSRP1 WILD-TYPE 68 45 38 14 50 18 21 37 50
'SSRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 0.26

Table S12202.  Gene #1194: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SSRP1 MUTATED 0 0 3 0 1 0
SSRP1 WILD-TYPE 13 16 11 11 10 9
'SSRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S12203.  Gene #1194: 'SSRP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SSRP1 MUTATED 0 0 0 1 1 1 1 0 0
SSRP1 WILD-TYPE 11 7 7 8 7 6 10 9 5
'ST6GALNAC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S12204.  Gene #1195: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ST6GALNAC3 MUTATED 1 3 8
ST6GALNAC3 WILD-TYPE 41 170 139
'ST6GALNAC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S12205.  Gene #1195: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ST6GALNAC3 MUTATED 6 2 2
ST6GALNAC3 WILD-TYPE 56 71 73
'ST6GALNAC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S12206.  Gene #1195: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ST6GALNAC3 MUTATED 3 3 6
ST6GALNAC3 WILD-TYPE 67 117 94
'ST6GALNAC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S12207.  Gene #1195: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ST6GALNAC3 MUTATED 2 1 0 2 1 5 0 0 1
ST6GALNAC3 WILD-TYPE 39 25 30 27 38 64 20 14 21
'ST6GALNAC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S12208.  Gene #1195: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ST6GALNAC3 MUTATED 2 2 7 1
ST6GALNAC3 WILD-TYPE 98 70 65 120

Figure S3249.  Get High-res Image Gene #1195: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ST6GALNAC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S12209.  Gene #1195: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ST6GALNAC3 MUTATED 4 2 5 0 1
ST6GALNAC3 WILD-TYPE 55 73 69 119 37

Figure S3250.  Get High-res Image Gene #1195: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ST6GALNAC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S12210.  Gene #1195: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ST6GALNAC3 MUTATED 1 4 5 0 1
ST6GALNAC3 WILD-TYPE 50 72 56 71 94

Figure S3251.  Get High-res Image Gene #1195: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ST6GALNAC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S12211.  Gene #1195: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ST6GALNAC3 MUTATED 3 4 0 1 2 0 1 0 0
ST6GALNAC3 WILD-TYPE 66 44 39 15 51 20 20 38 50
'ST6GALNAC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S12212.  Gene #1195: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ST6GALNAC3 MUTATED 0 1 1 1 1 0
ST6GALNAC3 WILD-TYPE 13 15 13 10 10 9
'ST6GALNAC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S12213.  Gene #1195: 'ST6GALNAC3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ST6GALNAC3 MUTATED 0 1 0 0 0 2 1 0 0
ST6GALNAC3 WILD-TYPE 11 6 7 9 8 5 10 9 5
'TCF7L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.65

Table S12214.  Gene #1196: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TCF7L2 MUTATED 3 0 1 3 1
TCF7L2 WILD-TYPE 29 18 45 24 22
'TCF7L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12215.  Gene #1196: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TCF7L2 MUTATED 2 4 2
TCF7L2 WILD-TYPE 41 63 34
'TCF7L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0013 (Fisher's exact test), Q value = 0.03

Table S12216.  Gene #1196: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TCF7L2 MUTATED 4 3 16
TCF7L2 WILD-TYPE 38 170 131

Figure S3252.  Get High-res Image Gene #1196: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TCF7L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.94

Table S12217.  Gene #1196: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TCF7L2 MUTATED 5 3 5
TCF7L2 WILD-TYPE 57 70 70
'TCF7L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S12218.  Gene #1196: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TCF7L2 MUTATED 4 5 9
TCF7L2 WILD-TYPE 66 115 91
'TCF7L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S12219.  Gene #1196: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TCF7L2 MUTATED 2 1 3 1 2 6 2 0 1
TCF7L2 WILD-TYPE 39 25 27 28 37 63 18 14 21
'TCF7L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S12220.  Gene #1196: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TCF7L2 MUTATED 3 6 6 7
TCF7L2 WILD-TYPE 97 66 66 114
'TCF7L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S12221.  Gene #1196: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TCF7L2 MUTATED 3 3 7 7 2
TCF7L2 WILD-TYPE 56 72 67 112 36
'TCF7L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0601 (Fisher's exact test), Q value = 0.26

Table S12222.  Gene #1196: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TCF7L2 MUTATED 0 9 2 5 5
TCF7L2 WILD-TYPE 51 67 59 66 90
'TCF7L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S12223.  Gene #1196: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TCF7L2 MUTATED 2 6 2 2 2 1 1 2 3
TCF7L2 WILD-TYPE 67 42 37 14 51 19 20 36 47
'TCF7L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.56

Table S12224.  Gene #1196: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TCF7L2 MUTATED 1 0 0 1 2 0
TCF7L2 WILD-TYPE 12 16 14 10 9 9
'TCF7L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S12225.  Gene #1196: 'TCF7L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TCF7L2 MUTATED 0 0 1 0 0 1 1 1 0
TCF7L2 WILD-TYPE 11 7 6 9 8 6 10 8 5
'PACS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.19

Table S12226.  Gene #1197: 'PACS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PACS2 MUTATED 0 0 5
PACS2 WILD-TYPE 42 173 142

Figure S3253.  Get High-res Image Gene #1197: 'PACS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PACS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0834 (Fisher's exact test), Q value = 0.31

Table S12227.  Gene #1197: 'PACS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PACS2 MUTATED 1 0 4
PACS2 WILD-TYPE 61 73 71
'PACS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S12228.  Gene #1197: 'PACS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PACS2 MUTATED 2 1 1
PACS2 WILD-TYPE 68 119 99
'PACS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.94

Table S12229.  Gene #1197: 'PACS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PACS2 MUTATED 1 1 0 0 0 1 1 0 0
PACS2 WILD-TYPE 40 25 30 29 39 68 19 14 22
'PACS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.14

Table S12230.  Gene #1197: 'PACS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PACS2 MUTATED 0 2 3 0
PACS2 WILD-TYPE 100 70 69 121

Figure S3254.  Get High-res Image Gene #1197: 'PACS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PACS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0209 (Fisher's exact test), Q value = 0.15

Table S12231.  Gene #1197: 'PACS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PACS2 MUTATED 0 1 4 0 0
PACS2 WILD-TYPE 59 74 70 119 38

Figure S3255.  Get High-res Image Gene #1197: 'PACS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PACS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S12232.  Gene #1197: 'PACS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PACS2 MUTATED 1 4 0 0 0
PACS2 WILD-TYPE 50 72 61 71 95

Figure S3256.  Get High-res Image Gene #1197: 'PACS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PACS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0375 (Fisher's exact test), Q value = 0.21

Table S12233.  Gene #1197: 'PACS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PACS2 MUTATED 1 2 0 2 0 0 0 0 0
PACS2 WILD-TYPE 68 46 39 14 53 20 21 38 50

Figure S3257.  Get High-res Image Gene #1197: 'PACS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PACS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S12234.  Gene #1197: 'PACS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PACS2 MUTATED 0 1 1 0 1 0
PACS2 WILD-TYPE 13 15 13 11 10 9
'PACS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.99

Table S12235.  Gene #1197: 'PACS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PACS2 MUTATED 0 0 0 0 1 1 1 0 0
PACS2 WILD-TYPE 11 7 7 9 7 6 10 9 5
'STAT5B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 0.3

Table S12236.  Gene #1198: 'STAT5B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
STAT5B MUTATED 3 0 0 2 0
STAT5B WILD-TYPE 29 18 46 25 23
'STAT5B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0677 (Fisher's exact test), Q value = 0.28

Table S12237.  Gene #1198: 'STAT5B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
STAT5B MUTATED 4 1 0
STAT5B WILD-TYPE 39 66 36
'STAT5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00305 (Fisher's exact test), Q value = 0.048

Table S12238.  Gene #1198: 'STAT5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STAT5B MUTATED 0 1 10
STAT5B WILD-TYPE 42 172 137

Figure S3258.  Get High-res Image Gene #1198: 'STAT5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STAT5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S12239.  Gene #1198: 'STAT5B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STAT5B MUTATED 4 1 3
STAT5B WILD-TYPE 58 72 72
'STAT5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S12240.  Gene #1198: 'STAT5B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STAT5B MUTATED 1 2 9
STAT5B WILD-TYPE 69 118 91

Figure S3259.  Get High-res Image Gene #1198: 'STAT5B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'STAT5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.75

Table S12241.  Gene #1198: 'STAT5B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STAT5B MUTATED 2 0 1 0 1 7 1 0 0
STAT5B WILD-TYPE 39 26 29 29 38 62 19 14 22
'STAT5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.045 (Fisher's exact test), Q value = 0.23

Table S12242.  Gene #1198: 'STAT5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STAT5B MUTATED 0 2 5 5
STAT5B WILD-TYPE 100 70 67 116

Figure S3260.  Get High-res Image Gene #1198: 'STAT5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'STAT5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 0.17

Table S12243.  Gene #1198: 'STAT5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STAT5B MUTATED 2 1 4 1 4
STAT5B WILD-TYPE 57 74 70 118 34

Figure S3261.  Get High-res Image Gene #1198: 'STAT5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STAT5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.34

Table S12244.  Gene #1198: 'STAT5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STAT5B MUTATED 0 5 2 0 4
STAT5B WILD-TYPE 51 71 59 71 91
'STAT5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S12245.  Gene #1198: 'STAT5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STAT5B MUTATED 2 3 0 1 1 1 0 3 0
STAT5B WILD-TYPE 67 45 39 15 52 19 21 35 50
'STAT5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S12246.  Gene #1198: 'STAT5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
STAT5B MUTATED 0 1 1 1 1 0
STAT5B WILD-TYPE 13 15 13 10 10 9
'STAT5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S12247.  Gene #1198: 'STAT5B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
STAT5B MUTATED 1 0 1 1 0 0 1 0 0
STAT5B WILD-TYPE 10 7 6 8 8 7 10 9 5
'ZNF622 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S12248.  Gene #1199: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF622 MUTATED 0 2 5
ZNF622 WILD-TYPE 42 171 142
'ZNF622 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S12249.  Gene #1199: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF622 MUTATED 0 2 4
ZNF622 WILD-TYPE 62 71 71
'ZNF622 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12250.  Gene #1199: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF622 MUTATED 1 2 1
ZNF622 WILD-TYPE 69 118 99
'ZNF622 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S12251.  Gene #1199: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF622 MUTATED 0 0 1 0 1 1 0 0 1
ZNF622 WILD-TYPE 41 26 29 29 38 68 20 14 21
'ZNF622 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.048 (Fisher's exact test), Q value = 0.23

Table S12252.  Gene #1199: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF622 MUTATED 0 3 3 1
ZNF622 WILD-TYPE 100 69 69 120

Figure S3262.  Get High-res Image Gene #1199: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF622 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S12253.  Gene #1199: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF622 MUTATED 2 0 4 0 1
ZNF622 WILD-TYPE 57 75 70 119 37

Figure S3263.  Get High-res Image Gene #1199: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF622 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S12254.  Gene #1199: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF622 MUTATED 1 3 1 1 1
ZNF622 WILD-TYPE 50 73 60 70 94
'ZNF622 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0894 (Fisher's exact test), Q value = 0.32

Table S12255.  Gene #1199: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF622 MUTATED 2 1 0 2 0 1 0 1 0
ZNF622 WILD-TYPE 67 47 39 14 53 19 21 37 50
'ZNF622 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S12256.  Gene #1199: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF622 MUTATED 0 0 1 0 1 1
ZNF622 WILD-TYPE 13 16 13 11 10 8
'ZNF622 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.94

Table S12257.  Gene #1199: 'ZNF622 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF622 MUTATED 1 0 0 0 0 0 1 0 1
ZNF622 WILD-TYPE 10 7 7 9 8 7 10 9 4
'ABCB6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S12258.  Gene #1200: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ABCB6 MUTATED 2 0 0 1 0
ABCB6 WILD-TYPE 30 18 46 26 23
'ABCB6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S12259.  Gene #1200: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ABCB6 MUTATED 2 1 0
ABCB6 WILD-TYPE 41 66 36
'ABCB6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0995 (Fisher's exact test), Q value = 0.34

Table S12260.  Gene #1200: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ABCB6 MUTATED 2 1 4
ABCB6 WILD-TYPE 40 172 143
'ABCB6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0717 (Fisher's exact test), Q value = 0.29

Table S12261.  Gene #1200: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ABCB6 MUTATED 3 1 0
ABCB6 WILD-TYPE 59 72 75
'ABCB6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0521 (Fisher's exact test), Q value = 0.24

Table S12262.  Gene #1200: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ABCB6 MUTATED 0 1 5
ABCB6 WILD-TYPE 70 119 95
'ABCB6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S12263.  Gene #1200: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ABCB6 MUTATED 1 0 0 0 1 4 0 0 0
ABCB6 WILD-TYPE 40 26 30 29 38 65 20 14 22
'ABCB6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S12264.  Gene #1200: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ABCB6 MUTATED 2 1 2 2
ABCB6 WILD-TYPE 98 71 70 119
'ABCB6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S12265.  Gene #1200: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ABCB6 MUTATED 0 1 3 2 1
ABCB6 WILD-TYPE 59 74 71 117 37
'ABCB6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S12266.  Gene #1200: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ABCB6 MUTATED 1 3 0 0 2
ABCB6 WILD-TYPE 50 73 61 71 93
'ABCB6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.95

Table S12267.  Gene #1200: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ABCB6 MUTATED 2 2 0 0 1 0 1 0 0
ABCB6 WILD-TYPE 67 46 39 16 52 20 20 38 50
'ZKSCAN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0973 (Fisher's exact test), Q value = 0.34

Table S12268.  Gene #1201: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZKSCAN1 MUTATED 3 0 0 1 0
ZKSCAN1 WILD-TYPE 29 18 46 26 23
'ZKSCAN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00975 (Fisher's exact test), Q value = 0.093

Table S12269.  Gene #1201: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZKSCAN1 MUTATED 4 0 0
ZKSCAN1 WILD-TYPE 39 67 36

Figure S3264.  Get High-res Image Gene #1201: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZKSCAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00702 (Fisher's exact test), Q value = 0.078

Table S12270.  Gene #1201: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZKSCAN1 MUTATED 0 0 7
ZKSCAN1 WILD-TYPE 42 173 140

Figure S3265.  Get High-res Image Gene #1201: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZKSCAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S12271.  Gene #1201: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZKSCAN1 MUTATED 0 0 3
ZKSCAN1 WILD-TYPE 62 73 72
'ZKSCAN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S12272.  Gene #1201: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZKSCAN1 MUTATED 3 2 0
ZKSCAN1 WILD-TYPE 67 118 100
'ZKSCAN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S12273.  Gene #1201: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZKSCAN1 MUTATED 2 0 0 0 2 0 1 0 0
ZKSCAN1 WILD-TYPE 39 26 30 29 37 69 19 14 22
'ZKSCAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S12274.  Gene #1201: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZKSCAN1 MUTATED 0 2 1 4
ZKSCAN1 WILD-TYPE 100 70 71 117
'ZKSCAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00185 (Fisher's exact test), Q value = 0.036

Table S12275.  Gene #1201: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZKSCAN1 MUTATED 0 1 2 0 4
ZKSCAN1 WILD-TYPE 59 74 72 119 34

Figure S3266.  Get High-res Image Gene #1201: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S12276.  Gene #1201: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZKSCAN1 MUTATED 1 1 0 0 5
ZKSCAN1 WILD-TYPE 50 75 61 71 90
'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00169 (Fisher's exact test), Q value = 0.034

Table S12277.  Gene #1201: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZKSCAN1 MUTATED 0 1 0 0 0 2 0 4 0
ZKSCAN1 WILD-TYPE 69 47 39 16 53 18 21 34 50

Figure S3267.  Get High-res Image Gene #1201: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C10ORF119 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S12278.  Gene #1202: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C10ORF119 MUTATED 0 3 6
C10ORF119 WILD-TYPE 42 170 141
'C10ORF119 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S12279.  Gene #1202: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C10ORF119 MUTATED 4 1 2
C10ORF119 WILD-TYPE 58 72 73
'C10ORF119 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S12280.  Gene #1202: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C10ORF119 MUTATED 0 3 3
C10ORF119 WILD-TYPE 70 117 97
'C10ORF119 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S12281.  Gene #1202: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C10ORF119 MUTATED 0 0 1 1 1 3 0 0 0
C10ORF119 WILD-TYPE 41 26 29 28 38 66 20 14 22
'C10ORF119 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S12282.  Gene #1202: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C10ORF119 MUTATED 3 2 2 2
C10ORF119 WILD-TYPE 97 70 70 119
'C10ORF119 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S12283.  Gene #1202: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C10ORF119 MUTATED 1 4 2 2 0
C10ORF119 WILD-TYPE 58 71 72 117 38
'C10ORF119 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S12284.  Gene #1202: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C10ORF119 MUTATED 1 3 1 2 2
C10ORF119 WILD-TYPE 50 73 60 69 93
'C10ORF119 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.74

Table S12285.  Gene #1202: 'C10ORF119 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C10ORF119 MUTATED 2 1 0 0 3 2 0 0 1
C10ORF119 WILD-TYPE 67 47 39 16 50 18 21 38 49
'CLTCL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.91

Table S12286.  Gene #1203: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CLTCL1 MUTATED 2 1 1 2 0
CLTCL1 WILD-TYPE 30 17 45 25 23
'CLTCL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12287.  Gene #1203: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CLTCL1 MUTATED 2 3 1
CLTCL1 WILD-TYPE 41 64 35
'CLTCL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S12288.  Gene #1203: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CLTCL1 MUTATED 2 6 10
CLTCL1 WILD-TYPE 40 167 137
'CLTCL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S12289.  Gene #1203: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CLTCL1 MUTATED 3 4 5
CLTCL1 WILD-TYPE 59 69 70
'CLTCL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S12290.  Gene #1203: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CLTCL1 MUTATED 4 5 5
CLTCL1 WILD-TYPE 66 115 95
'CLTCL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S12291.  Gene #1203: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CLTCL1 MUTATED 3 0 2 1 3 4 1 0 0
CLTCL1 WILD-TYPE 38 26 28 28 36 65 19 14 22
'CLTCL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S12292.  Gene #1203: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CLTCL1 MUTATED 4 4 4 6
CLTCL1 WILD-TYPE 96 68 68 115
'CLTCL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S12293.  Gene #1203: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CLTCL1 MUTATED 2 4 6 4 2
CLTCL1 WILD-TYPE 57 71 68 115 36
'CLTCL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.85

Table S12294.  Gene #1203: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CLTCL1 MUTATED 3 6 4 2 3
CLTCL1 WILD-TYPE 48 70 57 69 92
'CLTCL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S12295.  Gene #1203: 'CLTCL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CLTCL1 MUTATED 2 3 1 1 3 3 3 1 1
CLTCL1 WILD-TYPE 67 45 38 15 50 17 18 37 49
'GFRA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S12296.  Gene #1204: 'GFRA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GFRA4 MUTATED 0 0 3
GFRA4 WILD-TYPE 42 173 144
'GFRA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S12297.  Gene #1204: 'GFRA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GFRA4 MUTATED 0 2 1
GFRA4 WILD-TYPE 70 118 99
'GFRA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.55

Table S12298.  Gene #1204: 'GFRA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GFRA4 MUTATED 0 1 0 0 1 0 1 0 0
GFRA4 WILD-TYPE 41 25 30 29 38 69 19 14 22
'GFRA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S12299.  Gene #1204: 'GFRA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GFRA4 MUTATED 0 1 0 2
GFRA4 WILD-TYPE 100 71 72 119
'GFRA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.88

Table S12300.  Gene #1204: 'GFRA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GFRA4 MUTATED 0 0 1 1 1
GFRA4 WILD-TYPE 59 75 73 118 37
'GFRA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S12301.  Gene #1204: 'GFRA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GFRA4 MUTATED 0 1 0 0 2
GFRA4 WILD-TYPE 51 75 61 71 93
'GFRA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S12302.  Gene #1204: 'GFRA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GFRA4 MUTATED 0 0 0 0 0 1 0 1 1
GFRA4 WILD-TYPE 69 48 39 16 53 19 21 37 49
'CYP3A7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S12303.  Gene #1205: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CYP3A7 MUTATED 2 0 1 2 0
CYP3A7 WILD-TYPE 30 18 45 25 23
'CYP3A7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S12304.  Gene #1205: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CYP3A7 MUTATED 3 2 0
CYP3A7 WILD-TYPE 40 65 36
'CYP3A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.25

Table S12305.  Gene #1205: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CYP3A7 MUTATED 0 2 8
CYP3A7 WILD-TYPE 42 171 139
'CYP3A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12306.  Gene #1205: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CYP3A7 MUTATED 2 2 2
CYP3A7 WILD-TYPE 60 71 73
'CYP3A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12307.  Gene #1205: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CYP3A7 MUTATED 2 3 3
CYP3A7 WILD-TYPE 68 117 97
'CYP3A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S12308.  Gene #1205: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CYP3A7 MUTATED 2 0 1 0 3 0 1 1 0
CYP3A7 WILD-TYPE 39 26 29 29 36 69 19 13 22
'CYP3A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S12309.  Gene #1205: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CYP3A7 MUTATED 3 1 2 4
CYP3A7 WILD-TYPE 97 71 70 117
'CYP3A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.73

Table S12310.  Gene #1205: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CYP3A7 MUTATED 1 2 2 2 3
CYP3A7 WILD-TYPE 58 73 72 117 35
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S12311.  Gene #1205: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CYP3A7 MUTATED 0 4 1 0 5
CYP3A7 WILD-TYPE 51 72 60 71 90
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S12312.  Gene #1205: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CYP3A7 MUTATED 1 2 1 0 3 1 0 2 0
CYP3A7 WILD-TYPE 68 46 38 16 50 19 21 36 50
'THRAP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.34

Table S12313.  Gene #1206: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
THRAP3 MUTATED 3 0 0 1 0
THRAP3 WILD-TYPE 29 18 46 26 23
'THRAP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.095

Table S12314.  Gene #1206: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
THRAP3 MUTATED 4 0 0
THRAP3 WILD-TYPE 39 67 36

Figure S3268.  Get High-res Image Gene #1206: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'THRAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00841 (Fisher's exact test), Q value = 0.086

Table S12315.  Gene #1206: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
THRAP3 MUTATED 0 1 9
THRAP3 WILD-TYPE 42 172 138

Figure S3269.  Get High-res Image Gene #1206: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'THRAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.84

Table S12316.  Gene #1206: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
THRAP3 MUTATED 3 1 3
THRAP3 WILD-TYPE 59 72 72
'THRAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00188 (Fisher's exact test), Q value = 0.036

Table S12317.  Gene #1206: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
THRAP3 MUTATED 2 0 8
THRAP3 WILD-TYPE 68 120 92

Figure S3270.  Get High-res Image Gene #1206: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'THRAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.97

Table S12318.  Gene #1206: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
THRAP3 MUTATED 1 0 0 0 2 4 1 1 1
THRAP3 WILD-TYPE 40 26 30 29 37 65 19 13 21
'THRAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0834 (Fisher's exact test), Q value = 0.31

Table S12319.  Gene #1206: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
THRAP3 MUTATED 0 4 3 4
THRAP3 WILD-TYPE 100 68 69 117
'THRAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00424 (Fisher's exact test), Q value = 0.059

Table S12320.  Gene #1206: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
THRAP3 MUTATED 2 1 4 0 4
THRAP3 WILD-TYPE 57 74 70 119 34

Figure S3271.  Get High-res Image Gene #1206: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'THRAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S12321.  Gene #1206: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
THRAP3 MUTATED 1 3 2 1 3
THRAP3 WILD-TYPE 50 73 59 70 92
'THRAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S12322.  Gene #1206: 'THRAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
THRAP3 MUTATED 1 2 1 2 1 0 0 3 0
THRAP3 WILD-TYPE 68 46 38 14 52 20 21 35 50
'DNAH8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.1

Table S12323.  Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DNAH8 MUTATED 8 1 1 4 1
DNAH8 WILD-TYPE 24 17 45 23 22

Figure S3272.  Get High-res Image Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DNAH8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0234 (Fisher's exact test), Q value = 0.16

Table S12324.  Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DNAH8 MUTATED 9 3 3
DNAH8 WILD-TYPE 34 64 33

Figure S3273.  Get High-res Image Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DNAH8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00413 (Fisher's exact test), Q value = 0.058

Table S12325.  Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DNAH8 MUTATED 5 18 35
DNAH8 WILD-TYPE 37 155 112

Figure S3274.  Get High-res Image Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNAH8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.5

Table S12326.  Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DNAH8 MUTATED 17 11 17
DNAH8 WILD-TYPE 45 62 58
'DNAH8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0951 (Fisher's exact test), Q value = 0.34

Table S12327.  Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DNAH8 MUTATED 8 19 24
DNAH8 WILD-TYPE 62 101 76
'DNAH8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S12328.  Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DNAH8 MUTATED 5 4 4 5 7 18 4 3 1
DNAH8 WILD-TYPE 36 22 26 24 32 51 16 11 21
'DNAH8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S12329.  Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DNAH8 MUTATED 13 16 14 16
DNAH8 WILD-TYPE 87 56 58 105
'DNAH8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00211 (Fisher's exact test), Q value = 0.039

Table S12330.  Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DNAH8 MUTATED 8 12 21 9 9
DNAH8 WILD-TYPE 51 63 53 110 29

Figure S3275.  Get High-res Image Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DNAH8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 0.31

Table S12331.  Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DNAH8 MUTATED 8 20 10 7 12
DNAH8 WILD-TYPE 43 56 51 64 83
'DNAH8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S12332.  Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DNAH8 MUTATED 12 7 4 7 8 4 4 7 4
DNAH8 WILD-TYPE 57 41 35 9 45 16 17 31 46
'DNAH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00092 (Fisher's exact test), Q value = 0.024

Table S12333.  Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DNAH8 MUTATED 3 1 3 0 7 0
DNAH8 WILD-TYPE 10 15 11 11 4 9

Figure S3276.  Get High-res Image Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DNAH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0666 (Fisher's exact test), Q value = 0.28

Table S12334.  Gene #1207: 'DNAH8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DNAH8 MUTATED 0 1 0 5 3 1 2 1 1
DNAH8 WILD-TYPE 11 6 7 4 5 6 9 8 4
'PDGFC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S12335.  Gene #1208: 'PDGFC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PDGFC MUTATED 0 2 6
PDGFC WILD-TYPE 42 171 141
'PDGFC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S12336.  Gene #1208: 'PDGFC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PDGFC MUTATED 4 1 1
PDGFC WILD-TYPE 58 72 74
'PDGFC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S12337.  Gene #1208: 'PDGFC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PDGFC MUTATED 1 2 5
PDGFC WILD-TYPE 69 118 95
'PDGFC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S12338.  Gene #1208: 'PDGFC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PDGFC MUTATED 0 0 1 1 1 4 1 0 0
PDGFC WILD-TYPE 41 26 29 28 38 65 19 14 22
'PDGFC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S12339.  Gene #1208: 'PDGFC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PDGFC MUTATED 3 1 3 2
PDGFC WILD-TYPE 97 71 69 119
'PDGFC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S12340.  Gene #1208: 'PDGFC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PDGFC MUTATED 2 3 2 1 1
PDGFC WILD-TYPE 57 72 72 118 37
'PDGFC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.99

Table S12341.  Gene #1208: 'PDGFC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PDGFC MUTATED 0 3 2 1 3
PDGFC WILD-TYPE 51 73 59 70 92
'PDGFC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.91

Table S12342.  Gene #1208: 'PDGFC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PDGFC MUTATED 4 1 0 0 2 1 0 1 0
PDGFC WILD-TYPE 65 47 39 16 51 19 21 37 50
'PDGFC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S12343.  Gene #1208: 'PDGFC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PDGFC MUTATED 1 0 2 0 1 0
PDGFC WILD-TYPE 12 16 12 11 10 9
'PDGFC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S12344.  Gene #1208: 'PDGFC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PDGFC MUTATED 0 0 0 1 1 1 1 0 0
PDGFC WILD-TYPE 11 7 7 8 7 6 10 9 5
'STAG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0751 (Fisher's exact test), Q value = 0.3

Table S12345.  Gene #1209: 'STAG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
STAG2 MUTATED 3 0 0 2 0
STAG2 WILD-TYPE 29 18 46 25 23
'STAG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S12346.  Gene #1209: 'STAG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
STAG2 MUTATED 2 2 1
STAG2 WILD-TYPE 41 65 35
'STAG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S12347.  Gene #1209: 'STAG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STAG2 MUTATED 0 6 7
STAG2 WILD-TYPE 42 167 140
'STAG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0525 (Fisher's exact test), Q value = 0.25

Table S12348.  Gene #1209: 'STAG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STAG2 MUTATED 3 5 0
STAG2 WILD-TYPE 59 68 75
'STAG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.76

Table S12349.  Gene #1209: 'STAG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STAG2 MUTATED 1 6 3
STAG2 WILD-TYPE 69 114 97
'STAG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S12350.  Gene #1209: 'STAG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STAG2 MUTATED 0 1 2 1 0 3 0 1 2
STAG2 WILD-TYPE 41 25 28 28 39 66 20 13 20
'STAG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S12351.  Gene #1209: 'STAG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STAG2 MUTATED 5 0 2 6
STAG2 WILD-TYPE 95 72 70 115
'STAG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 0.98

Table S12352.  Gene #1209: 'STAG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STAG2 MUTATED 2 4 1 4 2
STAG2 WILD-TYPE 57 71 73 115 36
'STAG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S12353.  Gene #1209: 'STAG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STAG2 MUTATED 3 2 1 3 4
STAG2 WILD-TYPE 48 74 60 68 91
'STAG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S12354.  Gene #1209: 'STAG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STAG2 MUTATED 2 2 0 0 5 1 0 2 1
STAG2 WILD-TYPE 67 46 39 16 48 19 21 36 49
'CNOT10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.21

Table S12355.  Gene #1210: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CNOT10 MUTATED 1 1 7
CNOT10 WILD-TYPE 41 172 140

Figure S3277.  Get High-res Image Gene #1210: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CNOT10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S12356.  Gene #1210: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CNOT10 MUTATED 4 1 1
CNOT10 WILD-TYPE 58 72 74
'CNOT10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.16

Table S12357.  Gene #1210: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CNOT10 MUTATED 0 2 7
CNOT10 WILD-TYPE 70 118 93

Figure S3278.  Get High-res Image Gene #1210: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CNOT10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S12358.  Gene #1210: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CNOT10 MUTATED 1 0 2 0 0 6 0 0 0
CNOT10 WILD-TYPE 40 26 28 29 39 63 20 14 22
'CNOT10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S12359.  Gene #1210: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CNOT10 MUTATED 1 2 3 3
CNOT10 WILD-TYPE 99 70 69 118
'CNOT10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S12360.  Gene #1210: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CNOT10 MUTATED 1 2 3 1 2
CNOT10 WILD-TYPE 58 73 71 118 36
'CNOT10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S12361.  Gene #1210: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CNOT10 MUTATED 1 3 1 0 3
CNOT10 WILD-TYPE 50 73 60 71 92
'CNOT10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 0.97

Table S12362.  Gene #1210: 'CNOT10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CNOT10 MUTATED 3 2 0 0 0 1 0 1 1
CNOT10 WILD-TYPE 66 46 39 16 53 19 21 37 49
'RSPO2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.66

Table S12363.  Gene #1211: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RSPO2 MUTATED 2 0 0 1 1
RSPO2 WILD-TYPE 30 18 46 26 22
'RSPO2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 0.8

Table S12364.  Gene #1211: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RSPO2 MUTATED 1 1 2
RSPO2 WILD-TYPE 42 66 34
'RSPO2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S12365.  Gene #1211: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RSPO2 MUTATED 0 7 10
RSPO2 WILD-TYPE 42 166 137
'RSPO2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.095

Table S12366.  Gene #1211: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RSPO2 MUTATED 6 0 7
RSPO2 WILD-TYPE 56 73 68

Figure S3279.  Get High-res Image Gene #1211: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RSPO2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S12367.  Gene #1211: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RSPO2 MUTATED 3 4 5
RSPO2 WILD-TYPE 67 116 95
'RSPO2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S12368.  Gene #1211: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RSPO2 MUTATED 2 3 1 1 1 2 2 0 0
RSPO2 WILD-TYPE 39 23 29 28 38 67 18 14 22
'RSPO2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S12369.  Gene #1211: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RSPO2 MUTATED 4 3 6 4
RSPO2 WILD-TYPE 96 69 66 117
'RSPO2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S12370.  Gene #1211: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RSPO2 MUTATED 5 3 5 3 1
RSPO2 WILD-TYPE 54 72 69 116 37
'RSPO2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S12371.  Gene #1211: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RSPO2 MUTATED 2 7 3 3 2
RSPO2 WILD-TYPE 49 69 58 68 93
'RSPO2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S12372.  Gene #1211: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RSPO2 MUTATED 4 4 2 1 2 2 0 1 1
RSPO2 WILD-TYPE 65 44 37 15 51 18 21 37 49
'RSPO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.72

Table S12373.  Gene #1211: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RSPO2 MUTATED 0 2 2 0 2 0
RSPO2 WILD-TYPE 13 14 12 11 9 9
'RSPO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S12374.  Gene #1211: 'RSPO2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RSPO2 MUTATED 1 2 0 0 1 0 2 0 0
RSPO2 WILD-TYPE 10 5 7 9 7 7 9 9 5
'LPAR6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S12375.  Gene #1212: 'LPAR6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LPAR6 MUTATED 1 2 4
LPAR6 WILD-TYPE 41 171 143
'LPAR6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S12376.  Gene #1212: 'LPAR6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LPAR6 MUTATED 3 1 2
LPAR6 WILD-TYPE 59 72 73
'LPAR6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S12377.  Gene #1212: 'LPAR6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LPAR6 MUTATED 0 1 4
LPAR6 WILD-TYPE 70 119 96
'LPAR6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.99

Table S12378.  Gene #1212: 'LPAR6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LPAR6 MUTATED 1 0 0 0 0 3 1 0 0
LPAR6 WILD-TYPE 40 26 30 29 39 66 19 14 22
'LPAR6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S12379.  Gene #1212: 'LPAR6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LPAR6 MUTATED 2 2 2 1
LPAR6 WILD-TYPE 98 70 70 120
'LPAR6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S12380.  Gene #1212: 'LPAR6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LPAR6 MUTATED 1 3 2 0 1
LPAR6 WILD-TYPE 58 72 72 119 37
'LPAR6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S12381.  Gene #1212: 'LPAR6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LPAR6 MUTATED 2 3 0 0 1
LPAR6 WILD-TYPE 49 73 61 71 94
'LPAR6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S12382.  Gene #1212: 'LPAR6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LPAR6 MUTATED 1 2 1 0 1 0 0 0 1
LPAR6 WILD-TYPE 68 46 38 16 52 20 21 38 49
'FAM175A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S12383.  Gene #1213: 'FAM175A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FAM175A MUTATED 1 0 0 2 0
FAM175A WILD-TYPE 31 18 46 25 23
'FAM175A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S12384.  Gene #1213: 'FAM175A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FAM175A MUTATED 2 1 0
FAM175A WILD-TYPE 41 66 36
'FAM175A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0388 (Fisher's exact test), Q value = 0.21

Table S12385.  Gene #1213: 'FAM175A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM175A MUTATED 0 1 7
FAM175A WILD-TYPE 42 172 140

Figure S3280.  Get High-res Image Gene #1213: 'FAM175A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM175A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S12386.  Gene #1213: 'FAM175A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM175A MUTATED 2 1 2
FAM175A WILD-TYPE 60 72 73
'FAM175A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S12387.  Gene #1213: 'FAM175A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM175A MUTATED 0 5 3
FAM175A WILD-TYPE 70 115 97
'FAM175A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S12388.  Gene #1213: 'FAM175A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM175A MUTATED 0 1 1 1 0 3 1 1 0
FAM175A WILD-TYPE 41 25 29 28 39 66 19 13 22
'FAM175A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.93

Table S12389.  Gene #1213: 'FAM175A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM175A MUTATED 1 3 1 3
FAM175A WILD-TYPE 99 69 71 118
'FAM175A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S12390.  Gene #1213: 'FAM175A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM175A MUTATED 1 1 3 1 2
FAM175A WILD-TYPE 58 74 71 118 36
'FAM175A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S12391.  Gene #1213: 'FAM175A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM175A MUTATED 1 2 1 1 1
FAM175A WILD-TYPE 50 74 60 70 94
'FAM175A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S12392.  Gene #1213: 'FAM175A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM175A MUTATED 2 0 1 1 1 1 0 0 0
FAM175A WILD-TYPE 67 48 38 15 52 19 21 38 50
'SLC8A3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S12393.  Gene #1214: 'SLC8A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC8A3 MUTATED 2 0 1 2 0
SLC8A3 WILD-TYPE 30 18 45 25 23
'SLC8A3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S12394.  Gene #1214: 'SLC8A3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC8A3 MUTATED 3 1 1
SLC8A3 WILD-TYPE 40 66 35
'SLC8A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.21

Table S12395.  Gene #1214: 'SLC8A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC8A3 MUTATED 1 2 9
SLC8A3 WILD-TYPE 41 171 138

Figure S3281.  Get High-res Image Gene #1214: 'SLC8A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC8A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S12396.  Gene #1214: 'SLC8A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC8A3 MUTATED 3 2 2
SLC8A3 WILD-TYPE 59 71 73
'SLC8A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12397.  Gene #1214: 'SLC8A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC8A3 MUTATED 2 5 4
SLC8A3 WILD-TYPE 68 115 96
'SLC8A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 0.78

Table S12398.  Gene #1214: 'SLC8A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC8A3 MUTATED 0 1 0 2 3 3 1 1 0
SLC8A3 WILD-TYPE 41 25 30 27 36 66 19 13 22
'SLC8A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S12399.  Gene #1214: 'SLC8A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC8A3 MUTATED 1 4 2 5
SLC8A3 WILD-TYPE 99 68 70 116
'SLC8A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.55

Table S12400.  Gene #1214: 'SLC8A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC8A3 MUTATED 0 3 3 3 3
SLC8A3 WILD-TYPE 59 72 71 116 35
'SLC8A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S12401.  Gene #1214: 'SLC8A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC8A3 MUTATED 1 1 1 3 6
SLC8A3 WILD-TYPE 50 75 60 68 89
'SLC8A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S12402.  Gene #1214: 'SLC8A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC8A3 MUTATED 2 1 0 0 1 2 0 3 3
SLC8A3 WILD-TYPE 67 47 39 16 52 18 21 35 47
'A1CF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0541 (Fisher's exact test), Q value = 0.25

Table S12403.  Gene #1215: 'A1CF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
A1CF MUTATED 3 0 0 0 0
A1CF WILD-TYPE 29 18 46 27 23
'A1CF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S12404.  Gene #1215: 'A1CF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
A1CF MUTATED 2 0 1
A1CF WILD-TYPE 41 67 35
'A1CF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S12405.  Gene #1215: 'A1CF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
A1CF MUTATED 0 4 4
A1CF WILD-TYPE 42 169 143
'A1CF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S12406.  Gene #1215: 'A1CF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
A1CF MUTATED 1 3 2
A1CF WILD-TYPE 61 70 73
'A1CF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S12407.  Gene #1215: 'A1CF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
A1CF MUTATED 0 2 4
A1CF WILD-TYPE 70 118 96
'A1CF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S12408.  Gene #1215: 'A1CF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
A1CF MUTATED 2 0 0 0 1 2 0 1 0
A1CF WILD-TYPE 39 26 30 29 38 67 20 13 22
'A1CF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.9

Table S12409.  Gene #1215: 'A1CF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
A1CF MUTATED 3 0 2 3
A1CF WILD-TYPE 97 72 70 118
'A1CF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0821 (Fisher's exact test), Q value = 0.31

Table S12410.  Gene #1215: 'A1CF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
A1CF MUTATED 3 2 0 1 2
A1CF WILD-TYPE 56 73 74 118 36
'A1CF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S12411.  Gene #1215: 'A1CF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
A1CF MUTATED 2 1 1 2 2
A1CF WILD-TYPE 49 75 60 69 93
'A1CF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S12412.  Gene #1215: 'A1CF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
A1CF MUTATED 2 1 1 0 2 0 0 2 0
A1CF WILD-TYPE 67 47 38 16 51 20 21 36 50
'ARHGEF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0688 (Fisher's exact test), Q value = 0.28

Table S12413.  Gene #1216: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ARHGEF1 MUTATED 3 0 0 0 1
ARHGEF1 WILD-TYPE 29 18 46 27 22
'ARHGEF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0519 (Fisher's exact test), Q value = 0.24

Table S12414.  Gene #1216: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ARHGEF1 MUTATED 3 0 1
ARHGEF1 WILD-TYPE 40 67 35
'ARHGEF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.21

Table S12415.  Gene #1216: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARHGEF1 MUTATED 1 2 9
ARHGEF1 WILD-TYPE 41 171 138

Figure S3282.  Get High-res Image Gene #1216: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARHGEF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S12416.  Gene #1216: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARHGEF1 MUTATED 2 2 5
ARHGEF1 WILD-TYPE 60 71 70
'ARHGEF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S12417.  Gene #1216: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARHGEF1 MUTATED 2 3 6
ARHGEF1 WILD-TYPE 68 117 94
'ARHGEF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.63

Table S12418.  Gene #1216: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARHGEF1 MUTATED 0 1 0 1 1 5 2 1 0
ARHGEF1 WILD-TYPE 41 25 30 28 38 64 18 13 22
'ARHGEF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S12419.  Gene #1216: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARHGEF1 MUTATED 2 4 3 4
ARHGEF1 WILD-TYPE 98 68 69 117
'ARHGEF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00424 (Fisher's exact test), Q value = 0.059

Table S12420.  Gene #1216: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARHGEF1 MUTATED 0 2 7 1 3
ARHGEF1 WILD-TYPE 59 73 67 118 35

Figure S3283.  Get High-res Image Gene #1216: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARHGEF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.73

Table S12421.  Gene #1216: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARHGEF1 MUTATED 1 6 1 2 3
ARHGEF1 WILD-TYPE 50 70 60 69 92
'ARHGEF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S12422.  Gene #1216: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARHGEF1 MUTATED 3 2 1 3 1 1 0 2 0
ARHGEF1 WILD-TYPE 66 46 38 13 52 19 21 36 50
'ARHGEF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 0.31

Table S12423.  Gene #1216: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ARHGEF1 MUTATED 1 0 1 0 3 0
ARHGEF1 WILD-TYPE 12 16 13 11 8 9
'ARHGEF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.54

Table S12424.  Gene #1216: 'ARHGEF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ARHGEF1 MUTATED 0 0 0 2 2 0 1 0 0
ARHGEF1 WILD-TYPE 11 7 7 7 6 7 10 9 5
'ZNF559 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S12425.  Gene #1217: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF559 MUTATED 5 1 0 1 0
ZNF559 WILD-TYPE 27 17 46 26 23

Figure S3284.  Get High-res Image Gene #1217: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF559 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0347 (Fisher's exact test), Q value = 0.2

Table S12426.  Gene #1217: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF559 MUTATED 5 2 0
ZNF559 WILD-TYPE 38 65 36

Figure S3285.  Get High-res Image Gene #1217: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZNF559 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00782 (Fisher's exact test), Q value = 0.083

Table S12427.  Gene #1217: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF559 MUTATED 0 3 12
ZNF559 WILD-TYPE 42 170 135

Figure S3286.  Get High-res Image Gene #1217: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF559 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S12428.  Gene #1217: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF559 MUTATED 5 3 1
ZNF559 WILD-TYPE 57 70 74
'ZNF559 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.91

Table S12429.  Gene #1217: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF559 MUTATED 3 5 7
ZNF559 WILD-TYPE 67 115 93
'ZNF559 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S12430.  Gene #1217: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF559 MUTATED 3 0 1 0 3 6 1 1 0
ZNF559 WILD-TYPE 38 26 29 29 36 63 19 13 22
'ZNF559 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S12431.  Gene #1217: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF559 MUTATED 2 4 3 6
ZNF559 WILD-TYPE 98 68 69 115
'ZNF559 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S12432.  Gene #1217: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF559 MUTATED 1 3 4 4 3
ZNF559 WILD-TYPE 58 72 70 115 35
'ZNF559 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S12433.  Gene #1217: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF559 MUTATED 1 3 2 2 6
ZNF559 WILD-TYPE 50 73 59 69 89
'ZNF559 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S12434.  Gene #1217: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF559 MUTATED 2 2 1 0 2 1 2 3 1
ZNF559 WILD-TYPE 67 46 38 16 51 19 19 35 49
'ZNF559 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S12435.  Gene #1217: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF559 MUTATED 1 0 1 0 1 0
ZNF559 WILD-TYPE 12 16 13 11 10 9
'ZNF559 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S12436.  Gene #1217: 'ZNF559 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF559 MUTATED 0 0 0 1 1 0 1 0 0
ZNF559 WILD-TYPE 11 7 7 8 7 7 10 9 5
'EPHA7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0079 (Fisher's exact test), Q value = 0.083

Table S12437.  Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EPHA7 MUTATED 6 0 0 2 1
EPHA7 WILD-TYPE 26 18 46 25 22

Figure S3287.  Get High-res Image Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EPHA7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00703 (Fisher's exact test), Q value = 0.079

Table S12438.  Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EPHA7 MUTATED 7 1 1
EPHA7 WILD-TYPE 36 66 35

Figure S3288.  Get High-res Image Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EPHA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00101 (Fisher's exact test), Q value = 0.025

Table S12439.  Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EPHA7 MUTATED 2 8 24
EPHA7 WILD-TYPE 40 165 123

Figure S3289.  Get High-res Image Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EPHA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 0.21

Table S12440.  Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EPHA7 MUTATED 12 4 11
EPHA7 WILD-TYPE 50 69 64

Figure S3290.  Get High-res Image Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'EPHA7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.25

Table S12441.  Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EPHA7 MUTATED 4 9 16
EPHA7 WILD-TYPE 66 111 84
'EPHA7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S12442.  Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EPHA7 MUTATED 3 2 1 1 5 11 4 0 2
EPHA7 WILD-TYPE 38 24 29 28 34 58 16 14 20
'EPHA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00069 (Fisher's exact test), Q value = 0.02

Table S12443.  Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EPHA7 MUTATED 2 11 13 9
EPHA7 WILD-TYPE 98 61 59 112

Figure S3291.  Get High-res Image Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EPHA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S12444.  Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EPHA7 MUTATED 5 6 15 2 7
EPHA7 WILD-TYPE 54 69 59 117 31

Figure S3292.  Get High-res Image Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EPHA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00354 (Fisher's exact test), Q value = 0.053

Table S12445.  Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EPHA7 MUTATED 2 16 5 2 9
EPHA7 WILD-TYPE 49 60 56 69 86

Figure S3293.  Get High-res Image Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EPHA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.16

Table S12446.  Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EPHA7 MUTATED 10 7 1 3 2 2 0 7 2
EPHA7 WILD-TYPE 59 41 38 13 51 18 21 31 48

Figure S3294.  Get High-res Image Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EPHA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12447.  Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EPHA7 MUTATED 1 2 2 1 1 1
EPHA7 WILD-TYPE 12 14 12 10 10 8
'EPHA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S12448.  Gene #1218: 'EPHA7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EPHA7 MUTATED 3 0 0 1 1 0 3 0 0
EPHA7 WILD-TYPE 8 7 7 8 7 7 8 9 5
'KCTD9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.19

Table S12449.  Gene #1219: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KCTD9 MUTATED 0 0 5
KCTD9 WILD-TYPE 42 173 142

Figure S3295.  Get High-res Image Gene #1219: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KCTD9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0375 (Fisher's exact test), Q value = 0.21

Table S12450.  Gene #1219: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KCTD9 MUTATED 4 0 1
KCTD9 WILD-TYPE 58 73 74

Figure S3296.  Get High-res Image Gene #1219: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KCTD9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0619 (Fisher's exact test), Q value = 0.27

Table S12451.  Gene #1219: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KCTD9 MUTATED 1 0 4
KCTD9 WILD-TYPE 69 120 96
'KCTD9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S12452.  Gene #1219: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KCTD9 MUTATED 1 0 0 0 0 3 1 0 0
KCTD9 WILD-TYPE 40 26 30 29 39 66 19 14 22
'KCTD9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00049 (Fisher's exact test), Q value = 0.016

Table S12453.  Gene #1219: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KCTD9 MUTATED 0 0 5 0
KCTD9 WILD-TYPE 100 72 67 121

Figure S3297.  Get High-res Image Gene #1219: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KCTD9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00108 (Fisher's exact test), Q value = 0.026

Table S12454.  Gene #1219: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KCTD9 MUTATED 0 0 5 0 0
KCTD9 WILD-TYPE 59 75 69 119 38

Figure S3298.  Get High-res Image Gene #1219: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0017 (Fisher's exact test), Q value = 0.034

Table S12455.  Gene #1219: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KCTD9 MUTATED 0 5 0 0 0
KCTD9 WILD-TYPE 51 71 61 71 95

Figure S3299.  Get High-res Image Gene #1219: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S12456.  Gene #1219: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KCTD9 MUTATED 2 3 0 0 0 0 0 0 0
KCTD9 WILD-TYPE 67 45 39 16 53 20 21 38 50
'KCTD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.93

Table S12457.  Gene #1219: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KCTD9 MUTATED 0 1 2 0 1 0
KCTD9 WILD-TYPE 13 15 12 11 10 9
'KCTD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0842 (Fisher's exact test), Q value = 0.31

Table S12458.  Gene #1219: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KCTD9 MUTATED 0 0 0 0 0 2 2 0 0
KCTD9 WILD-TYPE 11 7 7 9 8 5 9 9 5
'CD47 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S12459.  Gene #1220: 'CD47 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CD47 MUTATED 0 2 6
CD47 WILD-TYPE 42 171 141
'CD47 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S12460.  Gene #1220: 'CD47 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CD47 MUTATED 2 2 1
CD47 WILD-TYPE 60 71 74
'CD47 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S12461.  Gene #1220: 'CD47 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CD47 MUTATED 1 2 4
CD47 WILD-TYPE 69 118 96
'CD47 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S12462.  Gene #1220: 'CD47 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CD47 MUTATED 2 1 2 0 1 1 0 0 0
CD47 WILD-TYPE 39 25 28 29 38 68 20 14 22
'CD47 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12463.  Gene #1220: 'CD47 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CD47 MUTATED 2 1 2 3
CD47 WILD-TYPE 98 71 70 118
'CD47 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S12464.  Gene #1220: 'CD47 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CD47 MUTATED 2 2 1 1 2
CD47 WILD-TYPE 57 73 73 118 36
'CD47 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S12465.  Gene #1220: 'CD47 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CD47 MUTATED 0 3 2 0 3
CD47 WILD-TYPE 51 73 59 71 92
'CD47 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0592 (Fisher's exact test), Q value = 0.26

Table S12466.  Gene #1220: 'CD47 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CD47 MUTATED 1 2 0 1 0 2 0 2 0
CD47 WILD-TYPE 68 46 39 15 53 18 21 36 50
'PTPRB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0965 (Fisher's exact test), Q value = 0.34

Table S12467.  Gene #1221: 'PTPRB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PTPRB MUTATED 3 0 0 1 0
PTPRB WILD-TYPE 29 18 46 26 23
'PTPRB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0507 (Fisher's exact test), Q value = 0.24

Table S12468.  Gene #1221: 'PTPRB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PTPRB MUTATED 3 0 1
PTPRB WILD-TYPE 40 67 35
'PTPRB MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-04 (Fisher's exact test), Q value = 0.023

Table S12469.  Gene #1221: 'PTPRB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTPRB MUTATED 1 2 14
PTPRB WILD-TYPE 41 171 133

Figure S3300.  Get High-res Image Gene #1221: 'PTPRB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPRB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S12470.  Gene #1221: 'PTPRB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTPRB MUTATED 7 2 4
PTPRB WILD-TYPE 55 71 71
'PTPRB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S12471.  Gene #1221: 'PTPRB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTPRB MUTATED 3 3 8
PTPRB WILD-TYPE 67 117 92
'PTPRB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.97

Table S12472.  Gene #1221: 'PTPRB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTPRB MUTATED 2 1 0 0 3 6 1 0 1
PTPRB WILD-TYPE 39 25 30 29 36 63 19 14 21
'PTPRB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.91

Table S12473.  Gene #1221: 'PTPRB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTPRB MUTATED 3 4 5 5
PTPRB WILD-TYPE 97 68 67 116
'PTPRB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0978 (Fisher's exact test), Q value = 0.34

Table S12474.  Gene #1221: 'PTPRB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTPRB MUTATED 2 3 7 2 3
PTPRB WILD-TYPE 57 72 67 117 35
'PTPRB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S12475.  Gene #1221: 'PTPRB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTPRB MUTATED 4 5 3 1 4
PTPRB WILD-TYPE 47 71 58 70 91
'PTPRB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.78

Table S12476.  Gene #1221: 'PTPRB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTPRB MUTATED 2 5 1 2 3 1 1 1 1
PTPRB WILD-TYPE 67 43 38 14 50 19 20 37 49
'PTPRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S12477.  Gene #1221: 'PTPRB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PTPRB MUTATED 1 1 0 0 1 0
PTPRB WILD-TYPE 12 15 14 11 10 9
'PTPRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S12478.  Gene #1221: 'PTPRB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PTPRB MUTATED 1 0 0 1 0 0 0 0 1
PTPRB WILD-TYPE 10 7 7 8 8 7 11 9 4
'GPR113 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.55

Table S12479.  Gene #1222: 'GPR113 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GPR113 MUTATED 3 0 1 0 0
GPR113 WILD-TYPE 29 18 45 27 23
'GPR113 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S12480.  Gene #1222: 'GPR113 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GPR113 MUTATED 3 1 0
GPR113 WILD-TYPE 40 66 36
'GPR113 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00352 (Fisher's exact test), Q value = 0.053

Table S12481.  Gene #1222: 'GPR113 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GPR113 MUTATED 0 2 12
GPR113 WILD-TYPE 42 171 135

Figure S3301.  Get High-res Image Gene #1222: 'GPR113 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPR113 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S12482.  Gene #1222: 'GPR113 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GPR113 MUTATED 5 1 4
GPR113 WILD-TYPE 57 72 71
'GPR113 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S12483.  Gene #1222: 'GPR113 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GPR113 MUTATED 0 4 6
GPR113 WILD-TYPE 70 116 94
'GPR113 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S12484.  Gene #1222: 'GPR113 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GPR113 MUTATED 1 1 1 2 1 3 1 0 0
GPR113 WILD-TYPE 40 25 29 27 38 66 19 14 22
'GPR113 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S12485.  Gene #1222: 'GPR113 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GPR113 MUTATED 1 5 3 5
GPR113 WILD-TYPE 99 67 69 116
'GPR113 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.16

Table S12486.  Gene #1222: 'GPR113 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GPR113 MUTATED 1 1 7 2 3
GPR113 WILD-TYPE 58 74 67 117 35

Figure S3302.  Get High-res Image Gene #1222: 'GPR113 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GPR113 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S12487.  Gene #1222: 'GPR113 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GPR113 MUTATED 1 6 2 0 5
GPR113 WILD-TYPE 50 70 59 71 90
'GPR113 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00104 (Fisher's exact test), Q value = 0.025

Table S12488.  Gene #1222: 'GPR113 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GPR113 MUTATED 1 3 1 5 0 0 1 2 1
GPR113 WILD-TYPE 68 45 38 11 53 20 20 36 49

Figure S3303.  Get High-res Image Gene #1222: 'GPR113 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA1407 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0973 (Fisher's exact test), Q value = 0.34

Table S12489.  Gene #1223: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIAA1407 MUTATED 3 0 0 1 0
KIAA1407 WILD-TYPE 29 18 46 26 23
'KIAA1407 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S12490.  Gene #1223: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIAA1407 MUTATED 3 1 0
KIAA1407 WILD-TYPE 40 66 36
'KIAA1407 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S12491.  Gene #1223: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA1407 MUTATED 1 4 5
KIAA1407 WILD-TYPE 41 169 142
'KIAA1407 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S12492.  Gene #1223: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA1407 MUTATED 3 2 2
KIAA1407 WILD-TYPE 59 71 73
'KIAA1407 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S12493.  Gene #1223: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA1407 MUTATED 0 5 5
KIAA1407 WILD-TYPE 70 115 95
'KIAA1407 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S12494.  Gene #1223: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA1407 MUTATED 0 1 1 1 2 3 1 1 0
KIAA1407 WILD-TYPE 41 25 29 28 37 66 19 13 22
'KIAA1407 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S12495.  Gene #1223: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA1407 MUTATED 2 2 3 4
KIAA1407 WILD-TYPE 98 70 69 117
'KIAA1407 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0865 (Fisher's exact test), Q value = 0.32

Table S12496.  Gene #1223: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA1407 MUTATED 3 1 3 1 3
KIAA1407 WILD-TYPE 56 74 71 118 35
'KIAA1407 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S12497.  Gene #1223: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA1407 MUTATED 0 4 2 1 4
KIAA1407 WILD-TYPE 51 72 59 70 91
'KIAA1407 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0513 (Fisher's exact test), Q value = 0.24

Table S12498.  Gene #1223: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA1407 MUTATED 3 2 0 2 0 1 0 3 0
KIAA1407 WILD-TYPE 66 46 39 14 53 19 21 35 50
'KIAA1407 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.95

Table S12499.  Gene #1223: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIAA1407 MUTATED 0 1 1 1 2 0
KIAA1407 WILD-TYPE 13 15 13 10 9 9
'KIAA1407 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.995 (Fisher's exact test), Q value = 1

Table S12500.  Gene #1223: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIAA1407 MUTATED 1 1 0 1 0 0 1 1 0
KIAA1407 WILD-TYPE 10 6 7 8 8 7 10 8 5
'PCDH20 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.9

Table S12501.  Gene #1224: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PCDH20 MUTATED 3 0 1 1 1
PCDH20 WILD-TYPE 29 18 45 26 22
'PCDH20 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S12502.  Gene #1224: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PCDH20 MUTATED 3 1 2
PCDH20 WILD-TYPE 40 66 34
'PCDH20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00188 (Fisher's exact test), Q value = 0.036

Table S12503.  Gene #1224: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PCDH20 MUTATED 5 3 13
PCDH20 WILD-TYPE 37 170 134

Figure S3304.  Get High-res Image Gene #1224: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PCDH20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S12504.  Gene #1224: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PCDH20 MUTATED 5 3 7
PCDH20 WILD-TYPE 57 70 68
'PCDH20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.94

Table S12505.  Gene #1224: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PCDH20 MUTATED 3 7 8
PCDH20 WILD-TYPE 67 113 92
'PCDH20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S12506.  Gene #1224: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PCDH20 MUTATED 1 0 1 3 3 7 2 0 1
PCDH20 WILD-TYPE 40 26 29 26 36 62 18 14 21
'PCDH20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.78

Table S12507.  Gene #1224: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PCDH20 MUTATED 4 7 4 6
PCDH20 WILD-TYPE 96 65 68 115
'PCDH20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S12508.  Gene #1224: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PCDH20 MUTATED 1 6 8 4 2
PCDH20 WILD-TYPE 58 69 66 115 36
'PCDH20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S12509.  Gene #1224: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PCDH20 MUTATED 3 6 2 2 8
PCDH20 WILD-TYPE 48 70 59 69 87
'PCDH20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.5

Table S12510.  Gene #1224: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PCDH20 MUTATED 5 3 0 3 1 2 1 3 3
PCDH20 WILD-TYPE 64 45 39 13 52 18 20 35 47
'PCDH20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S12511.  Gene #1224: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PCDH20 MUTATED 3 0 1 1 2 1
PCDH20 WILD-TYPE 10 16 13 10 9 8
'PCDH20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S12512.  Gene #1224: 'PCDH20 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PCDH20 MUTATED 1 0 0 2 0 0 3 1 1
PCDH20 WILD-TYPE 10 7 7 7 8 7 8 8 4
'ADH1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S12513.  Gene #1225: 'ADH1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ADH1B MUTATED 0 2 5
ADH1B WILD-TYPE 42 171 142
'ADH1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S12514.  Gene #1225: 'ADH1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ADH1B MUTATED 0 1 4
ADH1B WILD-TYPE 62 72 71
'ADH1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12515.  Gene #1225: 'ADH1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ADH1B MUTATED 1 2 2
ADH1B WILD-TYPE 69 118 98
'ADH1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.93

Table S12516.  Gene #1225: 'ADH1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ADH1B MUTATED 0 1 1 0 0 2 1 0 0
ADH1B WILD-TYPE 41 25 29 29 39 67 19 14 22
'ADH1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.78

Table S12517.  Gene #1225: 'ADH1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ADH1B MUTATED 2 3 1 1
ADH1B WILD-TYPE 98 69 71 120
'ADH1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.76

Table S12518.  Gene #1225: 'ADH1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ADH1B MUTATED 1 0 3 2 1
ADH1B WILD-TYPE 58 75 71 117 37
'ADH1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S12519.  Gene #1225: 'ADH1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ADH1B MUTATED 1 3 0 1 2
ADH1B WILD-TYPE 50 73 61 70 93
'ADH1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00341 (Fisher's exact test), Q value = 0.052

Table S12520.  Gene #1225: 'ADH1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ADH1B MUTATED 0 0 0 3 1 0 0 2 1
ADH1B WILD-TYPE 69 48 39 13 52 20 21 36 49

Figure S3305.  Get High-res Image Gene #1225: 'ADH1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TGIF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S12521.  Gene #1226: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TGIF1 MUTATED 2 2 5
TGIF1 WILD-TYPE 40 171 142
'TGIF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S12522.  Gene #1226: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TGIF1 MUTATED 4 3 1
TGIF1 WILD-TYPE 58 70 74
'TGIF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S12523.  Gene #1226: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TGIF1 MUTATED 0 5 3
TGIF1 WILD-TYPE 70 115 97
'TGIF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S12524.  Gene #1226: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TGIF1 MUTATED 0 2 1 2 0 2 0 1 0
TGIF1 WILD-TYPE 41 24 29 27 39 67 20 13 22
'TGIF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S12525.  Gene #1226: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TGIF1 MUTATED 3 1 3 2
TGIF1 WILD-TYPE 97 71 69 119
'TGIF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.84

Table S12526.  Gene #1226: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TGIF1 MUTATED 1 4 2 2 0
TGIF1 WILD-TYPE 58 71 72 117 38
'TGIF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S12527.  Gene #1226: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TGIF1 MUTATED 1 3 2 1 2
TGIF1 WILD-TYPE 50 73 59 70 93
'TGIF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S12528.  Gene #1226: 'TGIF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TGIF1 MUTATED 3 2 2 0 0 0 0 1 1
TGIF1 WILD-TYPE 66 46 37 16 53 20 21 37 49
'IGFBP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S12529.  Gene #1227: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IGFBP3 MUTATED 0 1 5
IGFBP3 WILD-TYPE 42 172 142
'IGFBP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12530.  Gene #1227: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IGFBP3 MUTATED 1 2 2
IGFBP3 WILD-TYPE 61 71 73
'IGFBP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S12531.  Gene #1227: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IGFBP3 MUTATED 1 1 3
IGFBP3 WILD-TYPE 69 119 97
'IGFBP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S12532.  Gene #1227: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IGFBP3 MUTATED 1 0 0 1 0 3 0 0 0
IGFBP3 WILD-TYPE 40 26 30 28 39 66 20 14 22
'IGFBP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S12533.  Gene #1227: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IGFBP3 MUTATED 2 2 1 1
IGFBP3 WILD-TYPE 98 70 71 120
'IGFBP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S12534.  Gene #1227: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IGFBP3 MUTATED 1 1 2 1 1
IGFBP3 WILD-TYPE 58 74 72 118 37
'IGFBP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.92

Table S12535.  Gene #1227: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IGFBP3 MUTATED 0 2 0 1 3
IGFBP3 WILD-TYPE 51 74 61 70 92
'IGFBP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S12536.  Gene #1227: 'IGFBP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IGFBP3 MUTATED 1 2 1 0 0 0 0 1 1
IGFBP3 WILD-TYPE 68 46 38 16 53 20 21 37 49
'POPDC3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S12537.  Gene #1228: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
POPDC3 MUTATED 2 0 0 1 0
POPDC3 WILD-TYPE 30 18 46 26 23
'POPDC3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12538.  Gene #1228: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
POPDC3 MUTATED 1 1 1
POPDC3 WILD-TYPE 42 66 35
'POPDC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S12539.  Gene #1228: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
POPDC3 MUTATED 0 1 5
POPDC3 WILD-TYPE 42 172 142
'POPDC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12540.  Gene #1228: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
POPDC3 MUTATED 1 1 1
POPDC3 WILD-TYPE 61 72 74
'POPDC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S12541.  Gene #1228: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
POPDC3 MUTATED 1 3 0
POPDC3 WILD-TYPE 69 117 100
'POPDC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 0.23

Table S12542.  Gene #1228: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
POPDC3 MUTATED 0 0 1 0 0 0 1 1 1
POPDC3 WILD-TYPE 41 26 29 29 39 69 19 13 21

Figure S3306.  Get High-res Image Gene #1228: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'POPDC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S12543.  Gene #1228: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
POPDC3 MUTATED 1 2 0 3
POPDC3 WILD-TYPE 99 70 72 118
'POPDC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S12544.  Gene #1228: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
POPDC3 MUTATED 0 1 2 2 1
POPDC3 WILD-TYPE 59 74 72 117 37
'POPDC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S12545.  Gene #1228: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
POPDC3 MUTATED 2 0 1 1 2
POPDC3 WILD-TYPE 49 76 60 70 93
'POPDC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S12546.  Gene #1228: 'POPDC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
POPDC3 MUTATED 1 0 0 0 2 2 0 1 0
POPDC3 WILD-TYPE 68 48 39 16 51 18 21 37 50
'SNRNP200 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S12547.  Gene #1229: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SNRNP200 MUTATED 4 0 1 1 1
SNRNP200 WILD-TYPE 28 18 45 26 22
'SNRNP200 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S12548.  Gene #1229: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SNRNP200 MUTATED 4 1 2
SNRNP200 WILD-TYPE 39 66 34
'SNRNP200 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S12549.  Gene #1229: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SNRNP200 MUTATED 2 7 11
SNRNP200 WILD-TYPE 40 166 136
'SNRNP200 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.76

Table S12550.  Gene #1229: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SNRNP200 MUTATED 6 3 4
SNRNP200 WILD-TYPE 56 70 71
'SNRNP200 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S12551.  Gene #1229: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SNRNP200 MUTATED 3 4 10
SNRNP200 WILD-TYPE 67 116 90
'SNRNP200 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S12552.  Gene #1229: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SNRNP200 MUTATED 1 4 1 0 2 7 2 0 0
SNRNP200 WILD-TYPE 40 22 29 29 37 62 18 14 22
'SNRNP200 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.83

Table S12553.  Gene #1229: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SNRNP200 MUTATED 4 6 5 5
SNRNP200 WILD-TYPE 96 66 67 116
'SNRNP200 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S12554.  Gene #1229: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SNRNP200 MUTATED 4 5 5 2 4
SNRNP200 WILD-TYPE 55 70 69 117 34
'SNRNP200 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.18

Table S12555.  Gene #1229: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SNRNP200 MUTATED 1 8 3 6 1
SNRNP200 WILD-TYPE 50 68 58 65 94

Figure S3307.  Get High-res Image Gene #1229: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SNRNP200 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 0.93

Table S12556.  Gene #1229: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SNRNP200 MUTATED 3 4 2 0 5 2 0 2 1
SNRNP200 WILD-TYPE 66 44 37 16 48 18 21 36 49
'SNRNP200 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12557.  Gene #1229: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SNRNP200 MUTATED 1 1 1 1 0 0
SNRNP200 WILD-TYPE 12 15 13 10 11 9
'SNRNP200 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S12558.  Gene #1229: 'SNRNP200 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SNRNP200 MUTATED 0 1 0 0 0 1 1 1 0
SNRNP200 WILD-TYPE 11 6 7 9 8 6 10 8 5
'BEND2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00225 (Fisher's exact test), Q value = 0.04

Table S12559.  Gene #1230: 'BEND2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BEND2 MUTATED 7 1 1 0 0
BEND2 WILD-TYPE 25 17 45 27 23

Figure S3308.  Get High-res Image Gene #1230: 'BEND2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BEND2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00652 (Fisher's exact test), Q value = 0.076

Table S12560.  Gene #1230: 'BEND2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BEND2 MUTATED 7 1 1
BEND2 WILD-TYPE 36 66 35

Figure S3309.  Get High-res Image Gene #1230: 'BEND2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BEND2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S12561.  Gene #1230: 'BEND2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BEND2 MUTATED 1 8 14
BEND2 WILD-TYPE 41 165 133
'BEND2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.78

Table S12562.  Gene #1230: 'BEND2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BEND2 MUTATED 5 7 3
BEND2 WILD-TYPE 57 66 72
'BEND2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S12563.  Gene #1230: 'BEND2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BEND2 MUTATED 3 9 7
BEND2 WILD-TYPE 67 111 93
'BEND2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.98

Table S12564.  Gene #1230: 'BEND2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BEND2 MUTATED 3 1 1 4 4 3 2 0 1
BEND2 WILD-TYPE 38 25 29 25 35 66 18 14 21
'BEND2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S12565.  Gene #1230: 'BEND2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BEND2 MUTATED 7 3 4 9
BEND2 WILD-TYPE 93 69 68 112
'BEND2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0577 (Fisher's exact test), Q value = 0.26

Table S12566.  Gene #1230: 'BEND2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BEND2 MUTATED 4 6 4 3 6
BEND2 WILD-TYPE 55 69 70 116 32
'BEND2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S12567.  Gene #1230: 'BEND2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BEND2 MUTATED 2 6 4 3 8
BEND2 WILD-TYPE 49 70 57 68 87
'BEND2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S12568.  Gene #1230: 'BEND2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BEND2 MUTATED 2 4 2 0 5 1 2 6 1
BEND2 WILD-TYPE 67 44 37 16 48 19 19 32 49
'BEND2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S12569.  Gene #1230: 'BEND2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BEND2 MUTATED 2 0 0 0 1 0
BEND2 WILD-TYPE 11 16 14 11 10 9
'BEND2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S12570.  Gene #1230: 'BEND2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BEND2 MUTATED 0 0 1 1 0 0 1 0 0
BEND2 WILD-TYPE 11 7 6 8 8 7 10 9 5
'MAP3K13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00582 (Fisher's exact test), Q value = 0.072

Table S12571.  Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MAP3K13 MUTATED 5 0 0 3 0
MAP3K13 WILD-TYPE 27 18 46 24 23

Figure S3310.  Get High-res Image Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MAP3K13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00151 (Fisher's exact test), Q value = 0.032

Table S12572.  Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MAP3K13 MUTATED 7 1 0
MAP3K13 WILD-TYPE 36 66 36

Figure S3311.  Get High-res Image Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MAP3K13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00427 (Fisher's exact test), Q value = 0.059

Table S12573.  Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAP3K13 MUTATED 1 3 14
MAP3K13 WILD-TYPE 41 170 133

Figure S3312.  Get High-res Image Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP3K13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S12574.  Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAP3K13 MUTATED 1 1 8
MAP3K13 WILD-TYPE 61 72 67

Figure S3313.  Get High-res Image Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MAP3K13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.89

Table S12575.  Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAP3K13 MUTATED 2 8 6
MAP3K13 WILD-TYPE 68 112 94
'MAP3K13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S12576.  Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAP3K13 MUTATED 0 2 2 1 3 4 3 1 0
MAP3K13 WILD-TYPE 41 24 28 28 36 65 17 13 22
'MAP3K13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0441 (Fisher's exact test), Q value = 0.22

Table S12577.  Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAP3K13 MUTATED 2 7 1 8
MAP3K13 WILD-TYPE 98 65 71 113

Figure S3314.  Get High-res Image Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAP3K13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.013

Table S12578.  Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAP3K13 MUTATED 1 1 7 2 7
MAP3K13 WILD-TYPE 58 74 67 117 31

Figure S3315.  Get High-res Image Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP3K13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S12579.  Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAP3K13 MUTATED 3 4 1 2 7
MAP3K13 WILD-TYPE 48 72 60 69 88
'MAP3K13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00871 (Fisher's exact test), Q value = 0.088

Table S12580.  Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAP3K13 MUTATED 5 0 0 2 2 2 1 5 0
MAP3K13 WILD-TYPE 64 48 39 14 51 18 20 33 50

Figure S3316.  Get High-res Image Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP3K13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S12581.  Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAP3K13 MUTATED 1 0 2 0 2 0
MAP3K13 WILD-TYPE 12 16 12 11 9 9
'MAP3K13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.93

Table S12582.  Gene #1231: 'MAP3K13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAP3K13 MUTATED 0 0 0 1 2 0 1 1 0
MAP3K13 WILD-TYPE 11 7 7 8 6 7 10 8 5
'ADAMTS16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S12583.  Gene #1232: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ADAMTS16 MUTATED 3 0 1 4 2
ADAMTS16 WILD-TYPE 29 18 45 23 21
'ADAMTS16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S12584.  Gene #1232: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ADAMTS16 MUTATED 4 3 3
ADAMTS16 WILD-TYPE 39 64 33
'ADAMTS16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00135 (Fisher's exact test), Q value = 0.03

Table S12585.  Gene #1232: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ADAMTS16 MUTATED 5 5 19
ADAMTS16 WILD-TYPE 37 168 128

Figure S3317.  Get High-res Image Gene #1232: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADAMTS16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 0.94

Table S12586.  Gene #1232: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ADAMTS16 MUTATED 7 5 8
ADAMTS16 WILD-TYPE 55 68 67
'ADAMTS16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S12587.  Gene #1232: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ADAMTS16 MUTATED 4 8 12
ADAMTS16 WILD-TYPE 66 112 88
'ADAMTS16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S12588.  Gene #1232: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ADAMTS16 MUTATED 4 2 2 2 2 8 3 0 1
ADAMTS16 WILD-TYPE 37 24 28 27 37 61 17 14 21
'ADAMTS16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.71

Table S12589.  Gene #1232: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ADAMTS16 MUTATED 6 9 7 8
ADAMTS16 WILD-TYPE 94 63 65 113
'ADAMTS16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.72

Table S12590.  Gene #1232: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ADAMTS16 MUTATED 4 5 10 7 4
ADAMTS16 WILD-TYPE 55 70 64 112 34
'ADAMTS16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.53

Table S12591.  Gene #1232: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ADAMTS16 MUTATED 2 11 3 5 7
ADAMTS16 WILD-TYPE 49 65 58 66 88
'ADAMTS16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0952 (Fisher's exact test), Q value = 0.34

Table S12592.  Gene #1232: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ADAMTS16 MUTATED 4 5 0 4 5 2 0 3 5
ADAMTS16 WILD-TYPE 65 43 39 12 48 18 21 35 45
'ADAMTS16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S12593.  Gene #1232: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ADAMTS16 MUTATED 0 2 1 1 1 0
ADAMTS16 WILD-TYPE 13 14 13 10 10 9
'ADAMTS16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.58

Table S12594.  Gene #1232: 'ADAMTS16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ADAMTS16 MUTATED 1 0 2 0 0 0 2 0 0
ADAMTS16 WILD-TYPE 10 7 5 9 8 7 9 9 5
'MAP3K10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.25

Table S12595.  Gene #1233: 'MAP3K10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAP3K10 MUTATED 0 2 8
MAP3K10 WILD-TYPE 42 171 139
'MAP3K10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.77

Table S12596.  Gene #1233: 'MAP3K10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAP3K10 MUTATED 3 1 4
MAP3K10 WILD-TYPE 59 72 71
'MAP3K10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S12597.  Gene #1233: 'MAP3K10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAP3K10 MUTATED 0 2 5
MAP3K10 WILD-TYPE 70 118 95
'MAP3K10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S12598.  Gene #1233: 'MAP3K10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAP3K10 MUTATED 1 0 1 0 1 4 0 0 0
MAP3K10 WILD-TYPE 40 26 29 29 38 65 20 14 22
'MAP3K10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.15

Table S12599.  Gene #1233: 'MAP3K10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAP3K10 MUTATED 0 5 3 2
MAP3K10 WILD-TYPE 100 67 69 119

Figure S3318.  Get High-res Image Gene #1233: 'MAP3K10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAP3K10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00062 (Fisher's exact test), Q value = 0.018

Table S12600.  Gene #1233: 'MAP3K10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAP3K10 MUTATED 0 1 7 0 2
MAP3K10 WILD-TYPE 59 74 67 119 36

Figure S3319.  Get High-res Image Gene #1233: 'MAP3K10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP3K10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S12601.  Gene #1233: 'MAP3K10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAP3K10 MUTATED 0 5 2 2 1
MAP3K10 WILD-TYPE 51 71 59 69 94
'MAP3K10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0418 (Fisher's exact test), Q value = 0.22

Table S12602.  Gene #1233: 'MAP3K10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAP3K10 MUTATED 3 1 0 3 1 0 0 2 0
MAP3K10 WILD-TYPE 66 47 39 13 52 20 21 36 50

Figure S3320.  Get High-res Image Gene #1233: 'MAP3K10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RUNX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 0.34

Table S12603.  Gene #1234: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RUNX2 MUTATED 3 0 0 1 0
RUNX2 WILD-TYPE 29 18 46 26 23
'RUNX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0516 (Fisher's exact test), Q value = 0.24

Table S12604.  Gene #1234: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RUNX2 MUTATED 3 0 1
RUNX2 WILD-TYPE 40 67 35
'RUNX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00229 (Fisher's exact test), Q value = 0.04

Table S12605.  Gene #1234: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RUNX2 MUTATED 0 0 8
RUNX2 WILD-TYPE 42 173 139

Figure S3321.  Get High-res Image Gene #1234: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RUNX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0822 (Fisher's exact test), Q value = 0.31

Table S12606.  Gene #1234: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RUNX2 MUTATED 1 0 4
RUNX2 WILD-TYPE 61 73 71
'RUNX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.99

Table S12607.  Gene #1234: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RUNX2 MUTATED 2 2 3
RUNX2 WILD-TYPE 68 118 97
'RUNX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S12608.  Gene #1234: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RUNX2 MUTATED 1 0 0 0 3 2 1 0 0
RUNX2 WILD-TYPE 40 26 30 29 36 67 19 14 22
'RUNX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.17

Table S12609.  Gene #1234: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RUNX2 MUTATED 0 0 4 4
RUNX2 WILD-TYPE 100 72 68 117

Figure S3322.  Get High-res Image Gene #1234: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RUNX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00739 (Fisher's exact test), Q value = 0.08

Table S12610.  Gene #1234: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RUNX2 MUTATED 0 0 4 1 3
RUNX2 WILD-TYPE 59 75 70 118 35

Figure S3323.  Get High-res Image Gene #1234: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RUNX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.54

Table S12611.  Gene #1234: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RUNX2 MUTATED 0 4 0 1 3
RUNX2 WILD-TYPE 51 72 61 70 92
'RUNX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0405 (Fisher's exact test), Q value = 0.21

Table S12612.  Gene #1234: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RUNX2 MUTATED 0 3 0 1 1 0 0 3 0
RUNX2 WILD-TYPE 69 45 39 15 52 20 21 35 50

Figure S3324.  Get High-res Image Gene #1234: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RUNX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.52

Table S12613.  Gene #1234: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RUNX2 MUTATED 0 1 0 0 2 0
RUNX2 WILD-TYPE 13 15 14 11 9 9
'RUNX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S12614.  Gene #1234: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RUNX2 MUTATED 0 0 0 0 1 0 2 0 0
RUNX2 WILD-TYPE 11 7 7 9 7 7 9 9 5
'SMARCA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S12615.  Gene #1235: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SMARCA1 MUTATED 3 0 0 1 1
SMARCA1 WILD-TYPE 29 18 46 26 22
'SMARCA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S12616.  Gene #1235: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SMARCA1 MUTATED 3 2 0
SMARCA1 WILD-TYPE 40 65 36
'SMARCA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S12617.  Gene #1235: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SMARCA1 MUTATED 0 2 17
SMARCA1 WILD-TYPE 42 171 130

Figure S3325.  Get High-res Image Gene #1235: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SMARCA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 0.26

Table S12618.  Gene #1235: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SMARCA1 MUTATED 4 1 8
SMARCA1 WILD-TYPE 58 72 67
'SMARCA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S12619.  Gene #1235: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SMARCA1 MUTATED 4 8 4
SMARCA1 WILD-TYPE 66 112 96
'SMARCA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.74

Table S12620.  Gene #1235: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SMARCA1 MUTATED 3 3 1 2 1 2 3 0 1
SMARCA1 WILD-TYPE 38 23 29 27 38 67 17 14 21
'SMARCA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S12621.  Gene #1235: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SMARCA1 MUTATED 2 6 5 6
SMARCA1 WILD-TYPE 98 66 67 115
'SMARCA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0275 (Fisher's exact test), Q value = 0.17

Table S12622.  Gene #1235: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SMARCA1 MUTATED 2 3 8 2 4
SMARCA1 WILD-TYPE 57 72 66 117 34

Figure S3326.  Get High-res Image Gene #1235: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMARCA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 0.32

Table S12623.  Gene #1235: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SMARCA1 MUTATED 4 6 2 0 6
SMARCA1 WILD-TYPE 47 70 59 71 89
'SMARCA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S12624.  Gene #1235: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SMARCA1 MUTATED 5 3 1 0 4 0 1 4 0
SMARCA1 WILD-TYPE 64 45 38 16 49 20 20 34 50
'SMARCA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.96

Table S12625.  Gene #1235: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SMARCA1 MUTATED 0 0 1 1 1 0
SMARCA1 WILD-TYPE 13 16 13 10 10 9
'SMARCA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 0.99

Table S12626.  Gene #1235: 'SMARCA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SMARCA1 MUTATED 0 0 0 0 1 1 1 0 0
SMARCA1 WILD-TYPE 11 7 7 9 7 6 10 9 5
'ZNF41 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S12627.  Gene #1236: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF41 MUTATED 0 0 1 1 1
ZNF41 WILD-TYPE 32 18 45 26 22
'ZNF41 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S12628.  Gene #1236: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF41 MUTATED 0 3 0
ZNF41 WILD-TYPE 43 64 36
'ZNF41 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.82

Table S12629.  Gene #1236: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF41 MUTATED 2 4 3
ZNF41 WILD-TYPE 40 169 144
'ZNF41 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S12630.  Gene #1236: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF41 MUTATED 1 2 3
ZNF41 WILD-TYPE 61 71 72
'ZNF41 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S12631.  Gene #1236: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF41 MUTATED 0 4 2
ZNF41 WILD-TYPE 70 116 98
'ZNF41 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S12632.  Gene #1236: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF41 MUTATED 0 1 1 2 0 2 0 0 0
ZNF41 WILD-TYPE 41 25 29 27 39 67 20 14 22
'ZNF41 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S12633.  Gene #1236: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF41 MUTATED 2 3 0 4
ZNF41 WILD-TYPE 98 69 72 117
'ZNF41 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S12634.  Gene #1236: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF41 MUTATED 0 4 1 4 0
ZNF41 WILD-TYPE 59 71 73 115 38
'ZNF41 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S12635.  Gene #1236: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF41 MUTATED 3 3 0 1 2
ZNF41 WILD-TYPE 48 73 61 70 93
'ZNF41 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 0.9

Table S12636.  Gene #1236: 'ZNF41 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF41 MUTATED 3 0 1 1 1 1 0 0 2
ZNF41 WILD-TYPE 66 48 38 15 52 19 21 38 48
'CD79A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S12637.  Gene #1237: 'CD79A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CD79A MUTATED 2 0 0 1 0
CD79A WILD-TYPE 30 18 46 26 23
'CD79A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S12638.  Gene #1237: 'CD79A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CD79A MUTATED 3 0 0
CD79A WILD-TYPE 40 67 36

Figure S3327.  Get High-res Image Gene #1237: 'CD79A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CD79A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S12639.  Gene #1237: 'CD79A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CD79A MUTATED 0 1 5
CD79A WILD-TYPE 42 172 142
'CD79A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S12640.  Gene #1237: 'CD79A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CD79A MUTATED 1 0 2
CD79A WILD-TYPE 61 73 73
'CD79A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.78

Table S12641.  Gene #1237: 'CD79A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CD79A MUTATED 0 3 3
CD79A WILD-TYPE 70 117 97
'CD79A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S12642.  Gene #1237: 'CD79A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CD79A MUTATED 1 1 0 1 2 1 0 0 0
CD79A WILD-TYPE 40 25 30 28 37 68 20 14 22
'CD79A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S12643.  Gene #1237: 'CD79A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CD79A MUTATED 0 2 1 3
CD79A WILD-TYPE 100 70 71 118
'CD79A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00747 (Fisher's exact test), Q value = 0.081

Table S12644.  Gene #1237: 'CD79A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CD79A MUTATED 1 0 2 0 3
CD79A WILD-TYPE 58 75 72 119 35

Figure S3328.  Get High-res Image Gene #1237: 'CD79A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CD79A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S12645.  Gene #1237: 'CD79A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CD79A MUTATED 1 2 0 0 3
CD79A WILD-TYPE 50 74 61 71 92
'CD79A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0929 (Fisher's exact test), Q value = 0.33

Table S12646.  Gene #1237: 'CD79A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CD79A MUTATED 1 1 0 1 0 0 0 3 0
CD79A WILD-TYPE 68 47 39 15 53 20 21 35 50
'TBX4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0518 (Fisher's exact test), Q value = 0.24

Table S12647.  Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TBX4 MUTATED 1 0 0 3 0
TBX4 WILD-TYPE 31 18 46 24 23
'TBX4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S12648.  Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TBX4 MUTATED 3 1 0
TBX4 WILD-TYPE 40 66 36
'TBX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00075 (Fisher's exact test), Q value = 0.021

Table S12649.  Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TBX4 MUTATED 1 0 10
TBX4 WILD-TYPE 41 173 137

Figure S3329.  Get High-res Image Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TBX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 0.24

Table S12650.  Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TBX4 MUTATED 2 0 5
TBX4 WILD-TYPE 60 73 70

Figure S3330.  Get High-res Image Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TBX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S12651.  Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TBX4 MUTATED 1 4 5
TBX4 WILD-TYPE 69 116 95
'TBX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.95

Table S12652.  Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TBX4 MUTATED 0 0 1 1 2 4 1 1 0
TBX4 WILD-TYPE 41 26 29 28 37 65 19 13 22
'TBX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 0.24

Table S12653.  Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TBX4 MUTATED 0 5 2 4
TBX4 WILD-TYPE 100 67 70 117

Figure S3331.  Get High-res Image Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TBX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.012

Table S12654.  Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TBX4 MUTATED 0 0 7 1 3
TBX4 WILD-TYPE 59 75 67 118 35

Figure S3332.  Get High-res Image Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0605 (Fisher's exact test), Q value = 0.26

Table S12655.  Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TBX4 MUTATED 1 5 0 0 4
TBX4 WILD-TYPE 50 71 61 71 91
'TBX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S12656.  Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TBX4 MUTATED 1 2 0 2 0 2 1 2 0
TBX4 WILD-TYPE 68 46 39 14 53 18 20 36 50

Figure S3333.  Get High-res Image Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0064 (Fisher's exact test), Q value = 0.075

Table S12657.  Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TBX4 MUTATED 0 0 0 0 3 0
TBX4 WILD-TYPE 13 16 14 11 8 9

Figure S3334.  Get High-res Image Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S12658.  Gene #1238: 'TBX4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TBX4 MUTATED 0 0 0 1 0 0 2 0 0
TBX4 WILD-TYPE 11 7 7 8 8 7 9 9 5
'EPSTI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S12659.  Gene #1239: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EPSTI1 MUTATED 1 1 5
EPSTI1 WILD-TYPE 41 172 142
'EPSTI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S12660.  Gene #1239: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EPSTI1 MUTATED 2 1 3
EPSTI1 WILD-TYPE 60 72 72
'EPSTI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S12661.  Gene #1239: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EPSTI1 MUTATED 0 3 3
EPSTI1 WILD-TYPE 70 117 97
'EPSTI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.992 (Fisher's exact test), Q value = 1

Table S12662.  Gene #1239: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EPSTI1 MUTATED 1 1 0 1 1 2 0 0 0
EPSTI1 WILD-TYPE 40 25 30 28 38 67 20 14 22
'EPSTI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S12663.  Gene #1239: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EPSTI1 MUTATED 1 3 1 2
EPSTI1 WILD-TYPE 99 69 71 119
'EPSTI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S12664.  Gene #1239: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EPSTI1 MUTATED 1 2 1 1 2
EPSTI1 WILD-TYPE 58 73 73 118 36
'EPSTI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S12665.  Gene #1239: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EPSTI1 MUTATED 1 1 1 0 4
EPSTI1 WILD-TYPE 50 75 60 71 91
'EPSTI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 0.23

Table S12666.  Gene #1239: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EPSTI1 MUTATED 0 1 0 1 0 1 0 3 1
EPSTI1 WILD-TYPE 69 47 39 15 53 19 21 35 49

Figure S3335.  Get High-res Image Gene #1239: 'EPSTI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TSPAN7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0883 (Fisher's exact test), Q value = 0.32

Table S12667.  Gene #1240: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TSPAN7 MUTATED 0 2 7
TSPAN7 WILD-TYPE 42 171 140
'TSPAN7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S12668.  Gene #1240: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TSPAN7 MUTATED 3 0 4
TSPAN7 WILD-TYPE 59 73 71
'TSPAN7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.62

Table S12669.  Gene #1240: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TSPAN7 MUTATED 2 1 4
TSPAN7 WILD-TYPE 68 119 96
'TSPAN7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S12670.  Gene #1240: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TSPAN7 MUTATED 1 1 0 0 2 2 1 0 0
TSPAN7 WILD-TYPE 40 25 30 29 37 67 19 14 22
'TSPAN7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S12671.  Gene #1240: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TSPAN7 MUTATED 1 2 4 2
TSPAN7 WILD-TYPE 99 70 68 119
'TSPAN7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S12672.  Gene #1240: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TSPAN7 MUTATED 1 1 5 0 2
TSPAN7 WILD-TYPE 58 74 69 119 36

Figure S3336.  Get High-res Image Gene #1240: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TSPAN7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S12673.  Gene #1240: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TSPAN7 MUTATED 0 3 3 0 3
TSPAN7 WILD-TYPE 51 73 58 71 92
'TSPAN7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 0.24

Table S12674.  Gene #1240: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TSPAN7 MUTATED 0 4 0 1 2 0 0 2 0
TSPAN7 WILD-TYPE 69 44 39 15 51 20 21 36 50

Figure S3337.  Get High-res Image Gene #1240: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TSPAN7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.58

Table S12675.  Gene #1240: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TSPAN7 MUTATED 0 2 0 0 0 1
TSPAN7 WILD-TYPE 13 14 14 11 11 8
'TSPAN7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S12676.  Gene #1240: 'TSPAN7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TSPAN7 MUTATED 0 1 0 0 0 1 1 0 0
TSPAN7 WILD-TYPE 11 6 7 9 8 6 10 9 5
'MED14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00379 (Fisher's exact test), Q value = 0.055

Table S12677.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MED14 MUTATED 6 0 1 0 0
MED14 WILD-TYPE 26 18 45 27 23

Figure S3338.  Get High-res Image Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MED14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00532 (Fisher's exact test), Q value = 0.069

Table S12678.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MED14 MUTATED 6 1 0
MED14 WILD-TYPE 37 66 36

Figure S3339.  Get High-res Image Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MED14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00126 (Fisher's exact test), Q value = 0.029

Table S12679.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MED14 MUTATED 3 2 14
MED14 WILD-TYPE 39 171 133

Figure S3340.  Get High-res Image Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MED14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S12680.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MED14 MUTATED 4 3 5
MED14 WILD-TYPE 58 70 70
'MED14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.16

Table S12681.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MED14 MUTATED 4 2 10
MED14 WILD-TYPE 66 118 90

Figure S3341.  Get High-res Image Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MED14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.56

Table S12682.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MED14 MUTATED 5 0 0 1 2 6 2 0 0
MED14 WILD-TYPE 36 26 30 28 37 63 18 14 22
'MED14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S12683.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MED14 MUTATED 4 4 5 6
MED14 WILD-TYPE 96 68 67 115
'MED14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00618 (Fisher's exact test), Q value = 0.074

Table S12684.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MED14 MUTATED 4 1 7 2 5
MED14 WILD-TYPE 55 74 67 117 33

Figure S3342.  Get High-res Image Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MED14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 0.26

Table S12685.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MED14 MUTATED 0 7 4 1 7
MED14 WILD-TYPE 51 69 57 70 88
'MED14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0412 (Fisher's exact test), Q value = 0.21

Table S12686.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MED14 MUTATED 3 5 1 3 1 1 1 4 0
MED14 WILD-TYPE 66 43 38 13 52 19 20 34 50

Figure S3343.  Get High-res Image Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MED14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S12687.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MED14 MUTATED 0 3 0 2 2 1
MED14 WILD-TYPE 13 13 14 9 9 8
'MED14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S12688.  Gene #1241: 'MED14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MED14 MUTATED 1 1 1 1 1 1 2 0 0
MED14 WILD-TYPE 10 6 6 8 7 6 9 9 5
'DOCK7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S12689.  Gene #1242: 'DOCK7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DOCK7 MUTATED 3 0 0 2 1
DOCK7 WILD-TYPE 29 18 46 25 22
'DOCK7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S12690.  Gene #1242: 'DOCK7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DOCK7 MUTATED 4 1 1
DOCK7 WILD-TYPE 39 66 35
'DOCK7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00148 (Fisher's exact test), Q value = 0.032

Table S12691.  Gene #1242: 'DOCK7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DOCK7 MUTATED 0 3 14
DOCK7 WILD-TYPE 42 170 133

Figure S3344.  Get High-res Image Gene #1242: 'DOCK7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DOCK7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S12692.  Gene #1242: 'DOCK7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DOCK7 MUTATED 4 1 6
DOCK7 WILD-TYPE 58 72 69
'DOCK7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.56

Table S12693.  Gene #1242: 'DOCK7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DOCK7 MUTATED 2 3 7
DOCK7 WILD-TYPE 68 117 93
'DOCK7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S12694.  Gene #1242: 'DOCK7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DOCK7 MUTATED 2 1 1 1 1 6 0 0 0
DOCK7 WILD-TYPE 39 25 29 28 38 63 20 14 22
'DOCK7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.74

Table S12695.  Gene #1242: 'DOCK7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DOCK7 MUTATED 2 5 4 6
DOCK7 WILD-TYPE 98 67 68 115
'DOCK7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0486 (Fisher's exact test), Q value = 0.24

Table S12696.  Gene #1242: 'DOCK7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DOCK7 MUTATED 1 2 7 3 4
DOCK7 WILD-TYPE 58 73 67 116 34

Figure S3345.  Get High-res Image Gene #1242: 'DOCK7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DOCK7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.62

Table S12697.  Gene #1242: 'DOCK7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DOCK7 MUTATED 1 6 2 1 6
DOCK7 WILD-TYPE 50 70 59 70 89
'DOCK7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S12698.  Gene #1242: 'DOCK7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DOCK7 MUTATED 3 4 1 1 0 2 1 3 1
DOCK7 WILD-TYPE 66 44 38 15 53 18 20 35 49
'DBF4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0543 (Fisher's exact test), Q value = 0.25

Table S12699.  Gene #1243: 'DBF4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DBF4 MUTATED 3 0 0 0 0
DBF4 WILD-TYPE 29 18 46 27 23
'DBF4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S12700.  Gene #1243: 'DBF4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DBF4 MUTATED 2 0 1
DBF4 WILD-TYPE 41 67 35
'DBF4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00704 (Fisher's exact test), Q value = 0.079

Table S12701.  Gene #1243: 'DBF4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DBF4 MUTATED 0 0 7
DBF4 WILD-TYPE 42 173 140

Figure S3346.  Get High-res Image Gene #1243: 'DBF4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DBF4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.59

Table S12702.  Gene #1243: 'DBF4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DBF4 MUTATED 2 0 3
DBF4 WILD-TYPE 60 73 72
'DBF4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S12703.  Gene #1243: 'DBF4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DBF4 MUTATED 1 1 2
DBF4 WILD-TYPE 69 119 98
'DBF4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S12704.  Gene #1243: 'DBF4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DBF4 MUTATED 2 0 0 0 1 1 0 0 0
DBF4 WILD-TYPE 39 26 30 29 38 68 20 14 22
'DBF4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S12705.  Gene #1243: 'DBF4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DBF4 MUTATED 0 1 3 3
DBF4 WILD-TYPE 100 71 69 118
'DBF4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S12706.  Gene #1243: 'DBF4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DBF4 MUTATED 1 0 3 1 2
DBF4 WILD-TYPE 58 75 71 118 36
'DBF4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S12707.  Gene #1243: 'DBF4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DBF4 MUTATED 0 3 1 1 2
DBF4 WILD-TYPE 51 73 60 70 93
'DBF4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0894 (Fisher's exact test), Q value = 0.32

Table S12708.  Gene #1243: 'DBF4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DBF4 MUTATED 0 3 0 1 1 0 0 2 0
DBF4 WILD-TYPE 69 45 39 15 52 20 21 36 50
'OR13C5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S12709.  Gene #1244: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR13C5 MUTATED 3 3 4
OR13C5 WILD-TYPE 39 170 143
'OR13C5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S12710.  Gene #1244: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR13C5 MUTATED 5 1 3
OR13C5 WILD-TYPE 57 72 72
'OR13C5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.25

Table S12711.  Gene #1244: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR13C5 MUTATED 0 4 7
OR13C5 WILD-TYPE 70 116 93
'OR13C5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S12712.  Gene #1244: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR13C5 MUTATED 2 0 0 1 1 5 2 0 0
OR13C5 WILD-TYPE 39 26 30 28 38 64 18 14 22
'OR13C5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S12713.  Gene #1244: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR13C5 MUTATED 3 2 3 3
OR13C5 WILD-TYPE 97 70 69 118
'OR13C5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.93

Table S12714.  Gene #1244: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR13C5 MUTATED 2 2 4 2 1
OR13C5 WILD-TYPE 57 73 70 117 37
'OR13C5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S12715.  Gene #1244: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR13C5 MUTATED 2 3 3 1 2
OR13C5 WILD-TYPE 49 73 58 70 93
'OR13C5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S12716.  Gene #1244: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR13C5 MUTATED 1 3 1 2 2 0 0 1 1
OR13C5 WILD-TYPE 68 45 38 14 51 20 21 37 49
'OR13C5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S12717.  Gene #1244: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR13C5 MUTATED 1 2 0 0 0 0
OR13C5 WILD-TYPE 12 14 14 11 11 9
'OR13C5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S12718.  Gene #1244: 'OR13C5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR13C5 MUTATED 0 1 0 0 0 1 0 1 0
OR13C5 WILD-TYPE 11 6 7 9 8 6 11 8 5
'GOLIM4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 0.34

Table S12719.  Gene #1245: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GOLIM4 MUTATED 3 1 0 2 0
GOLIM4 WILD-TYPE 29 17 46 25 23
'GOLIM4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0858 (Fisher's exact test), Q value = 0.32

Table S12720.  Gene #1245: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GOLIM4 MUTATED 4 2 0
GOLIM4 WILD-TYPE 39 65 36
'GOLIM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.14

Table S12721.  Gene #1245: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GOLIM4 MUTATED 0 1 8
GOLIM4 WILD-TYPE 42 172 139

Figure S3347.  Get High-res Image Gene #1245: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GOLIM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.98

Table S12722.  Gene #1245: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GOLIM4 MUTATED 2 1 1
GOLIM4 WILD-TYPE 60 72 74
'GOLIM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.91

Table S12723.  Gene #1245: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GOLIM4 MUTATED 2 2 4
GOLIM4 WILD-TYPE 68 118 96
'GOLIM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S12724.  Gene #1245: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GOLIM4 MUTATED 1 1 1 0 2 3 0 0 0
GOLIM4 WILD-TYPE 40 25 29 29 37 66 20 14 22
'GOLIM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0941 (Fisher's exact test), Q value = 0.33

Table S12725.  Gene #1245: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GOLIM4 MUTATED 0 1 2 6
GOLIM4 WILD-TYPE 100 71 70 115
'GOLIM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 0.12

Table S12726.  Gene #1245: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GOLIM4 MUTATED 0 0 2 3 4
GOLIM4 WILD-TYPE 59 75 72 116 34

Figure S3348.  Get High-res Image Gene #1245: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GOLIM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S12727.  Gene #1245: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GOLIM4 MUTATED 0 2 0 1 5
GOLIM4 WILD-TYPE 51 74 61 70 90
'GOLIM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.046 (Fisher's exact test), Q value = 0.23

Table S12728.  Gene #1245: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GOLIM4 MUTATED 0 1 0 1 0 1 1 3 1
GOLIM4 WILD-TYPE 69 47 39 15 53 19 20 35 49

Figure S3349.  Get High-res Image Gene #1245: 'GOLIM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IRGQ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S12729.  Gene #1246: 'IRGQ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IRGQ MUTATED 0 0 3
IRGQ WILD-TYPE 42 173 144
'IRGQ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.25

Table S12730.  Gene #1246: 'IRGQ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IRGQ MUTATED 0 0 3
IRGQ WILD-TYPE 70 120 97
'IRGQ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 0.96

Table S12731.  Gene #1246: 'IRGQ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IRGQ MUTATED 0 0 0 0 0 3 0 0 0
IRGQ WILD-TYPE 41 26 30 29 39 66 20 14 22
'IRGQ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S12732.  Gene #1246: 'IRGQ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IRGQ MUTATED 0 2 0 1
IRGQ WILD-TYPE 100 70 72 120
'IRGQ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.78

Table S12733.  Gene #1246: 'IRGQ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IRGQ MUTATED 0 0 2 1 0
IRGQ WILD-TYPE 59 75 72 118 38
'IRGQ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S12734.  Gene #1246: 'IRGQ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IRGQ MUTATED 0 2 0 0 1
IRGQ WILD-TYPE 51 74 61 71 94
'IRGQ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00103 (Fisher's exact test), Q value = 0.025

Table S12735.  Gene #1246: 'IRGQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IRGQ MUTATED 0 0 0 2 0 0 1 0 0
IRGQ WILD-TYPE 69 48 39 14 53 20 20 38 50

Figure S3350.  Get High-res Image Gene #1246: 'IRGQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CYP2C9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S12736.  Gene #1247: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CYP2C9 MUTATED 3 0 1 0 0
CYP2C9 WILD-TYPE 29 18 45 27 23
'CYP2C9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S12737.  Gene #1247: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CYP2C9 MUTATED 2 0 2
CYP2C9 WILD-TYPE 41 67 34
'CYP2C9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S12738.  Gene #1247: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CYP2C9 MUTATED 0 4 4
CYP2C9 WILD-TYPE 42 169 143
'CYP2C9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S12739.  Gene #1247: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CYP2C9 MUTATED 0 3 1
CYP2C9 WILD-TYPE 62 70 74
'CYP2C9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S12740.  Gene #1247: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CYP2C9 MUTATED 0 3 4
CYP2C9 WILD-TYPE 70 117 96
'CYP2C9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S12741.  Gene #1247: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CYP2C9 MUTATED 0 0 0 1 3 3 0 0 0
CYP2C9 WILD-TYPE 41 26 30 28 36 66 20 14 22
'CYP2C9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S12742.  Gene #1247: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CYP2C9 MUTATED 3 1 0 4
CYP2C9 WILD-TYPE 97 71 72 117
'CYP2C9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.64

Table S12743.  Gene #1247: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CYP2C9 MUTATED 0 3 1 2 2
CYP2C9 WILD-TYPE 59 72 73 117 36
'CYP2C9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S12744.  Gene #1247: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CYP2C9 MUTATED 1 2 0 2 2
CYP2C9 WILD-TYPE 50 74 61 69 93
'CYP2C9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 0.96

Table S12745.  Gene #1247: 'CYP2C9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CYP2C9 MUTATED 3 0 0 1 1 0 0 1 1
CYP2C9 WILD-TYPE 66 48 39 15 52 20 21 37 49
'IL6R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00726 (Fisher's exact test), Q value = 0.08

Table S12746.  Gene #1248: 'IL6R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IL6R MUTATED 0 0 7
IL6R WILD-TYPE 42 173 140

Figure S3351.  Get High-res Image Gene #1248: 'IL6R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IL6R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S12747.  Gene #1248: 'IL6R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IL6R MUTATED 2 1 2
IL6R WILD-TYPE 60 72 73
'IL6R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S12748.  Gene #1248: 'IL6R MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IL6R MUTATED 0 4 2
IL6R WILD-TYPE 70 116 98
'IL6R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 0.78

Table S12749.  Gene #1248: 'IL6R MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IL6R MUTATED 0 2 0 0 2 2 0 0 0
IL6R WILD-TYPE 41 24 30 29 37 67 20 14 22
'IL6R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S12750.  Gene #1248: 'IL6R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IL6R MUTATED 1 1 2 3
IL6R WILD-TYPE 99 71 70 118
'IL6R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S12751.  Gene #1248: 'IL6R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IL6R MUTATED 0 1 3 1 2
IL6R WILD-TYPE 59 74 71 118 36
'IL6R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S12752.  Gene #1248: 'IL6R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IL6R MUTATED 0 1 2 1 3
IL6R WILD-TYPE 51 75 59 70 92
'IL6R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S12753.  Gene #1248: 'IL6R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IL6R MUTATED 0 2 1 1 0 0 0 2 1
IL6R WILD-TYPE 69 46 38 15 53 20 21 36 49
'ZNF235 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S12754.  Gene #1249: 'ZNF235 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF235 MUTATED 1 0 1 0 1
ZNF235 WILD-TYPE 31 18 45 27 22
'ZNF235 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S12755.  Gene #1249: 'ZNF235 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF235 MUTATED 0 2 1
ZNF235 WILD-TYPE 43 65 35
'ZNF235 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 0.88

Table S12756.  Gene #1249: 'ZNF235 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF235 MUTATED 0 6 3
ZNF235 WILD-TYPE 42 167 144
'ZNF235 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S12757.  Gene #1249: 'ZNF235 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF235 MUTATED 3 1 2
ZNF235 WILD-TYPE 59 72 73
'ZNF235 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12758.  Gene #1249: 'ZNF235 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF235 MUTATED 2 3 2
ZNF235 WILD-TYPE 68 117 98
'ZNF235 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.63

Table S12759.  Gene #1249: 'ZNF235 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF235 MUTATED 0 0 0 1 3 1 1 0 1
ZNF235 WILD-TYPE 41 26 30 28 36 68 19 14 21
'ZNF235 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S12760.  Gene #1249: 'ZNF235 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF235 MUTATED 1 2 3 3
ZNF235 WILD-TYPE 99 70 69 118
'ZNF235 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.94

Table S12761.  Gene #1249: 'ZNF235 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF235 MUTATED 3 1 2 3 0
ZNF235 WILD-TYPE 56 74 72 116 38
'ZNF235 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S12762.  Gene #1249: 'ZNF235 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF235 MUTATED 1 3 1 1 3
ZNF235 WILD-TYPE 50 73 60 70 92
'ZNF235 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 0.91

Table S12763.  Gene #1249: 'ZNF235 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF235 MUTATED 1 2 0 0 4 0 0 1 1
ZNF235 WILD-TYPE 68 46 39 16 49 20 21 37 49
'C20ORF151 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S12764.  Gene #1250: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C20ORF151 MUTATED 1 2 6
C20ORF151 WILD-TYPE 41 171 141
'C20ORF151 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S12765.  Gene #1250: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C20ORF151 MUTATED 3 2 2
C20ORF151 WILD-TYPE 59 71 73
'C20ORF151 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S12766.  Gene #1250: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C20ORF151 MUTATED 4 3 2
C20ORF151 WILD-TYPE 66 117 98
'C20ORF151 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S12767.  Gene #1250: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C20ORF151 MUTATED 0 2 1 0 1 3 0 1 1
C20ORF151 WILD-TYPE 41 24 29 29 38 66 20 13 21
'C20ORF151 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.53

Table S12768.  Gene #1250: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C20ORF151 MUTATED 2 2 4 1
C20ORF151 WILD-TYPE 98 70 68 120
'C20ORF151 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.22

Table S12769.  Gene #1250: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C20ORF151 MUTATED 2 0 5 1 1
C20ORF151 WILD-TYPE 57 75 69 118 37

Figure S3352.  Get High-res Image Gene #1250: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C20ORF151 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S12770.  Gene #1250: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C20ORF151 MUTATED 0 4 2 2 1
C20ORF151 WILD-TYPE 51 72 59 69 94
'C20ORF151 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S12771.  Gene #1250: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C20ORF151 MUTATED 4 2 1 1 0 0 0 1 0
C20ORF151 WILD-TYPE 65 46 38 15 53 20 21 37 50
'C20ORF151 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S12772.  Gene #1250: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C20ORF151 MUTATED 0 1 1 1 1 0
C20ORF151 WILD-TYPE 13 15 13 10 10 9
'C20ORF151 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S12773.  Gene #1250: 'C20ORF151 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C20ORF151 MUTATED 1 0 0 1 0 1 0 1 0
C20ORF151 WILD-TYPE 10 7 7 8 8 6 11 8 5
'CEPT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.56

Table S12774.  Gene #1251: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CEPT1 MUTATED 0 1 4
CEPT1 WILD-TYPE 42 172 143
'CEPT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S12775.  Gene #1251: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CEPT1 MUTATED 2 0 2
CEPT1 WILD-TYPE 60 73 73
'CEPT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S12776.  Gene #1251: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CEPT1 MUTATED 0 1 3
CEPT1 WILD-TYPE 70 119 97
'CEPT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S12777.  Gene #1251: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CEPT1 MUTATED 1 0 1 0 0 2 0 0 0
CEPT1 WILD-TYPE 40 26 29 29 39 67 20 14 22
'CEPT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S12778.  Gene #1251: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CEPT1 MUTATED 1 1 2 1
CEPT1 WILD-TYPE 99 71 70 120
'CEPT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.53

Table S12779.  Gene #1251: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CEPT1 MUTATED 1 1 2 0 1
CEPT1 WILD-TYPE 58 74 72 119 37
'CEPT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S12780.  Gene #1251: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CEPT1 MUTATED 0 2 1 1 1
CEPT1 WILD-TYPE 51 74 60 70 94
'CEPT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.74

Table S12781.  Gene #1251: 'CEPT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CEPT1 MUTATED 2 2 0 0 0 0 1 0 0
CEPT1 WILD-TYPE 67 46 39 16 53 20 20 38 50
'GGNBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S12782.  Gene #1252: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GGNBP2 MUTATED 1 3 7
GGNBP2 WILD-TYPE 41 170 140
'GGNBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S12783.  Gene #1252: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GGNBP2 MUTATED 3 1 5
GGNBP2 WILD-TYPE 59 72 70
'GGNBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S12784.  Gene #1252: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GGNBP2 MUTATED 1 4 5
GGNBP2 WILD-TYPE 69 116 95
'GGNBP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S12785.  Gene #1252: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GGNBP2 MUTATED 2 0 1 2 0 3 2 0 0
GGNBP2 WILD-TYPE 39 26 29 27 39 66 18 14 22
'GGNBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S12786.  Gene #1252: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GGNBP2 MUTATED 2 3 4 2
GGNBP2 WILD-TYPE 98 69 68 119
'GGNBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S12787.  Gene #1252: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GGNBP2 MUTATED 1 4 4 1 1
GGNBP2 WILD-TYPE 58 71 70 118 37
'GGNBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.56

Table S12788.  Gene #1252: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GGNBP2 MUTATED 1 5 0 2 2
GGNBP2 WILD-TYPE 50 71 61 69 93
'GGNBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S12789.  Gene #1252: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GGNBP2 MUTATED 2 2 0 2 2 1 0 0 1
GGNBP2 WILD-TYPE 67 46 39 14 51 19 21 38 49
'CTCFL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00834 (Fisher's exact test), Q value = 0.086

Table S12790.  Gene #1253: 'CTCFL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CTCFL MUTATED 5 0 0 1 0
CTCFL WILD-TYPE 27 18 46 26 23

Figure S3353.  Get High-res Image Gene #1253: 'CTCFL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CTCFL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00674 (Fisher's exact test), Q value = 0.077

Table S12791.  Gene #1253: 'CTCFL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CTCFL MUTATED 5 0 1
CTCFL WILD-TYPE 38 67 35

Figure S3354.  Get High-res Image Gene #1253: 'CTCFL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CTCFL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00334 (Fisher's exact test), Q value = 0.051

Table S12792.  Gene #1253: 'CTCFL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CTCFL MUTATED 0 2 12
CTCFL WILD-TYPE 42 171 135

Figure S3355.  Get High-res Image Gene #1253: 'CTCFL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTCFL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S12793.  Gene #1253: 'CTCFL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CTCFL MUTATED 4 1 3
CTCFL WILD-TYPE 58 72 72
'CTCFL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S12794.  Gene #1253: 'CTCFL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CTCFL MUTATED 3 2 7
CTCFL WILD-TYPE 67 118 93
'CTCFL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S12795.  Gene #1253: 'CTCFL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CTCFL MUTATED 1 0 1 0 0 6 1 2 1
CTCFL WILD-TYPE 40 26 29 29 39 63 19 12 21
'CTCFL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.89

Table S12796.  Gene #1253: 'CTCFL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CTCFL MUTATED 2 3 3 7
CTCFL WILD-TYPE 98 69 69 114
'CTCFL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0232 (Fisher's exact test), Q value = 0.16

Table S12797.  Gene #1253: 'CTCFL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CTCFL MUTATED 1 2 5 2 5
CTCFL WILD-TYPE 58 73 69 117 33

Figure S3356.  Get High-res Image Gene #1253: 'CTCFL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTCFL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S12798.  Gene #1253: 'CTCFL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CTCFL MUTATED 2 4 3 1 4
CTCFL WILD-TYPE 49 72 58 70 91
'CTCFL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S12799.  Gene #1253: 'CTCFL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CTCFL MUTATED 3 2 0 1 2 1 2 3 0
CTCFL WILD-TYPE 66 46 39 15 51 19 19 35 50
'CTCFL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12800.  Gene #1253: 'CTCFL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CTCFL MUTATED 1 1 1 0 1 0
CTCFL WILD-TYPE 12 15 13 11 10 9
'CTCFL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S12801.  Gene #1253: 'CTCFL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CTCFL MUTATED 1 0 0 0 1 0 1 0 1
CTCFL WILD-TYPE 10 7 7 9 7 7 10 9 4
'SLC16A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00736 (Fisher's exact test), Q value = 0.08

Table S12802.  Gene #1254: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC16A1 MUTATED 0 0 7
SLC16A1 WILD-TYPE 42 173 140

Figure S3357.  Get High-res Image Gene #1254: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC16A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0798 (Fisher's exact test), Q value = 0.31

Table S12803.  Gene #1254: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC16A1 MUTATED 1 0 4
SLC16A1 WILD-TYPE 61 73 71
'SLC16A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S12804.  Gene #1254: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC16A1 MUTATED 0 3 2
SLC16A1 WILD-TYPE 70 117 98
'SLC16A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S12805.  Gene #1254: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC16A1 MUTATED 1 0 0 1 1 1 1 0 0
SLC16A1 WILD-TYPE 40 26 30 28 38 68 19 14 22
'SLC16A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S12806.  Gene #1254: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC16A1 MUTATED 0 3 2 2
SLC16A1 WILD-TYPE 100 69 70 119
'SLC16A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0632 (Fisher's exact test), Q value = 0.27

Table S12807.  Gene #1254: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC16A1 MUTATED 1 1 3 0 2
SLC16A1 WILD-TYPE 58 74 71 119 36
'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S12808.  Gene #1254: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC16A1 MUTATED 1 3 1 0 2
SLC16A1 WILD-TYPE 50 73 60 71 93
'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S12809.  Gene #1254: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC16A1 MUTATED 1 2 0 1 0 1 0 2 0
SLC16A1 WILD-TYPE 68 46 39 15 53 19 21 36 50
'MAP2K4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 0.23

Table S12810.  Gene #1255: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MAP2K4 MUTATED 3 2 0 4 1
MAP2K4 WILD-TYPE 29 16 46 23 22

Figure S3358.  Get High-res Image Gene #1255: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MAP2K4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S12811.  Gene #1255: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MAP2K4 MUTATED 5 3 2
MAP2K4 WILD-TYPE 38 64 34
'MAP2K4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S12812.  Gene #1255: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAP2K4 MUTATED 4 7 18
MAP2K4 WILD-TYPE 38 166 129

Figure S3359.  Get High-res Image Gene #1255: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP2K4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0817 (Fisher's exact test), Q value = 0.31

Table S12813.  Gene #1255: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAP2K4 MUTATED 6 3 11
MAP2K4 WILD-TYPE 56 70 64
'MAP2K4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S12814.  Gene #1255: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAP2K4 MUTATED 3 12 9
MAP2K4 WILD-TYPE 67 108 91
'MAP2K4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0615 (Fisher's exact test), Q value = 0.27

Table S12815.  Gene #1255: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAP2K4 MUTATED 0 1 3 4 3 9 1 3 0
MAP2K4 WILD-TYPE 41 25 27 25 36 60 19 11 22
'MAP2K4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S12816.  Gene #1255: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAP2K4 MUTATED 3 12 6 9
MAP2K4 WILD-TYPE 97 60 66 112

Figure S3360.  Get High-res Image Gene #1255: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAP2K4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0862 (Fisher's exact test), Q value = 0.32

Table S12817.  Gene #1255: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAP2K4 MUTATED 2 7 11 6 4
MAP2K4 WILD-TYPE 57 68 63 113 34
'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0296 (Fisher's exact test), Q value = 0.18

Table S12818.  Gene #1255: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAP2K4 MUTATED 3 13 3 2 8
MAP2K4 WILD-TYPE 48 63 58 69 87

Figure S3361.  Get High-res Image Gene #1255: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0526 (Fisher's exact test), Q value = 0.25

Table S12819.  Gene #1255: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAP2K4 MUTATED 7 2 2 5 4 3 2 3 1
MAP2K4 WILD-TYPE 62 46 37 11 49 17 19 35 49
'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S12820.  Gene #1255: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAP2K4 MUTATED 1 1 2 0 3 1
MAP2K4 WILD-TYPE 12 15 12 11 8 8
'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S12821.  Gene #1255: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAP2K4 MUTATED 2 0 1 2 1 0 2 0 0
MAP2K4 WILD-TYPE 9 7 6 7 7 7 9 9 5
'DUSP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S12822.  Gene #1256: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DUSP9 MUTATED 0 3 6
DUSP9 WILD-TYPE 42 170 141
'DUSP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.73

Table S12823.  Gene #1256: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DUSP9 MUTATED 3 4 1
DUSP9 WILD-TYPE 59 69 74
'DUSP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S12824.  Gene #1256: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DUSP9 MUTATED 2 1 5
DUSP9 WILD-TYPE 68 119 95
'DUSP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.91

Table S12825.  Gene #1256: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DUSP9 MUTATED 2 0 0 0 1 3 0 0 2
DUSP9 WILD-TYPE 39 26 30 29 38 66 20 14 20
'DUSP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S12826.  Gene #1256: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DUSP9 MUTATED 1 3 4 1
DUSP9 WILD-TYPE 99 69 68 120
'DUSP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0839 (Fisher's exact test), Q value = 0.31

Table S12827.  Gene #1256: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DUSP9 MUTATED 3 2 3 0 1
DUSP9 WILD-TYPE 56 73 71 119 37
'DUSP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00923 (Fisher's exact test), Q value = 0.09

Table S12828.  Gene #1256: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DUSP9 MUTATED 0 3 5 1 0
DUSP9 WILD-TYPE 51 73 56 70 95

Figure S3362.  Get High-res Image Gene #1256: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DUSP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0701 (Fisher's exact test), Q value = 0.29

Table S12829.  Gene #1256: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DUSP9 MUTATED 3 3 0 2 0 0 0 1 0
DUSP9 WILD-TYPE 66 45 39 14 53 20 21 37 50
'DUSP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S12830.  Gene #1256: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DUSP9 MUTATED 0 1 0 1 0 1
DUSP9 WILD-TYPE 13 15 14 10 11 8
'DUSP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 0.9

Table S12831.  Gene #1256: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DUSP9 MUTATED 1 0 1 0 0 1 0 0 0
DUSP9 WILD-TYPE 10 7 6 9 8 6 11 9 5
'BRD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0546 (Fisher's exact test), Q value = 0.25

Table S12832.  Gene #1257: 'BRD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BRD2 MUTATED 3 0 0 0 0
BRD2 WILD-TYPE 29 18 46 27 23
'BRD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S12833.  Gene #1257: 'BRD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BRD2 MUTATED 2 0 1
BRD2 WILD-TYPE 41 67 35
'BRD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S12834.  Gene #1257: 'BRD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BRD2 MUTATED 2 1 8
BRD2 WILD-TYPE 40 172 139

Figure S3363.  Get High-res Image Gene #1257: 'BRD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BRD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S12835.  Gene #1257: 'BRD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BRD2 MUTATED 1 2 6
BRD2 WILD-TYPE 61 71 69
'BRD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S12836.  Gene #1257: 'BRD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BRD2 MUTATED 0 5 4
BRD2 WILD-TYPE 70 115 96
'BRD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.99

Table S12837.  Gene #1257: 'BRD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BRD2 MUTATED 0 1 0 2 1 3 1 0 1
BRD2 WILD-TYPE 41 25 30 27 38 66 19 14 21
'BRD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.25

Table S12838.  Gene #1257: 'BRD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BRD2 MUTATED 1 6 1 3
BRD2 WILD-TYPE 99 66 71 118
'BRD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S12839.  Gene #1257: 'BRD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BRD2 MUTATED 1 2 4 2 2
BRD2 WILD-TYPE 58 73 70 117 36
'BRD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S12840.  Gene #1257: 'BRD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BRD2 MUTATED 3 3 0 3 2
BRD2 WILD-TYPE 48 73 61 68 93
'BRD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.1

Table S12841.  Gene #1257: 'BRD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BRD2 MUTATED 1 0 1 3 2 1 0 3 0
BRD2 WILD-TYPE 68 48 38 13 51 19 21 35 50

Figure S3364.  Get High-res Image Gene #1257: 'BRD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AP4B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0703 (Fisher's exact test), Q value = 0.29

Table S12842.  Gene #1258: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AP4B1 MUTATED 0 3 9
AP4B1 WILD-TYPE 42 170 138
'AP4B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S12843.  Gene #1258: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AP4B1 MUTATED 3 2 5
AP4B1 WILD-TYPE 59 71 70
'AP4B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S12844.  Gene #1258: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AP4B1 MUTATED 1 6 2
AP4B1 WILD-TYPE 69 114 98
'AP4B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S12845.  Gene #1258: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AP4B1 MUTATED 0 1 1 2 2 2 0 0 1
AP4B1 WILD-TYPE 41 25 29 27 37 67 20 14 21
'AP4B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S12846.  Gene #1258: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AP4B1 MUTATED 3 5 1 3
AP4B1 WILD-TYPE 97 67 71 118
'AP4B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S12847.  Gene #1258: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AP4B1 MUTATED 1 3 5 2 1
AP4B1 WILD-TYPE 58 72 69 117 37
'AP4B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S12848.  Gene #1258: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AP4B1 MUTATED 2 5 1 1 3
AP4B1 WILD-TYPE 49 71 60 70 92
'AP4B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.55

Table S12849.  Gene #1258: 'AP4B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AP4B1 MUTATED 3 2 0 1 1 3 0 1 1
AP4B1 WILD-TYPE 66 46 39 15 52 17 21 37 49
'NTNG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S12850.  Gene #1259: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NTNG1 MUTATED 1 4 9
NTNG1 WILD-TYPE 41 169 138
'NTNG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.33

Table S12851.  Gene #1259: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NTNG1 MUTATED 4 1 7
NTNG1 WILD-TYPE 58 72 68
'NTNG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.57

Table S12852.  Gene #1259: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NTNG1 MUTATED 1 8 4
NTNG1 WILD-TYPE 69 112 96
'NTNG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S12853.  Gene #1259: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NTNG1 MUTATED 0 2 0 3 2 2 1 1 2
NTNG1 WILD-TYPE 41 24 30 26 37 67 19 13 20
'NTNG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 0.29

Table S12854.  Gene #1259: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NTNG1 MUTATED 2 7 2 3
NTNG1 WILD-TYPE 98 65 70 118
'NTNG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S12855.  Gene #1259: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NTNG1 MUTATED 2 2 7 2 1
NTNG1 WILD-TYPE 57 73 67 117 37
'NTNG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00224 (Fisher's exact test), Q value = 0.04

Table S12856.  Gene #1259: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NTNG1 MUTATED 1 9 1 0 2
NTNG1 WILD-TYPE 50 67 60 71 93

Figure S3365.  Get High-res Image Gene #1259: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NTNG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00382 (Fisher's exact test), Q value = 0.055

Table S12857.  Gene #1259: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NTNG1 MUTATED 3 4 0 4 0 0 0 1 1
NTNG1 WILD-TYPE 66 44 39 12 53 20 21 37 49

Figure S3366.  Get High-res Image Gene #1259: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NTNG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S12858.  Gene #1259: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NTNG1 MUTATED 1 1 0 0 1 0
NTNG1 WILD-TYPE 12 15 14 11 10 9
'NTNG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S12859.  Gene #1259: 'NTNG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NTNG1 MUTATED 1 0 0 2 0 0 0 0 0
NTNG1 WILD-TYPE 10 7 7 7 8 7 11 9 5
'LGALS9C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S12860.  Gene #1260: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LGALS9C MUTATED 0 2 3
LGALS9C WILD-TYPE 42 171 144
'LGALS9C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S12861.  Gene #1260: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LGALS9C MUTATED 2 1 2
LGALS9C WILD-TYPE 60 72 73
'LGALS9C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S12862.  Gene #1260: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LGALS9C MUTATED 0 2 3
LGALS9C WILD-TYPE 70 118 97
'LGALS9C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.77

Table S12863.  Gene #1260: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LGALS9C MUTATED 0 0 0 0 0 3 1 0 1
LGALS9C WILD-TYPE 41 26 30 29 39 66 19 14 21
'LGALS9C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S12864.  Gene #1260: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LGALS9C MUTATED 2 2 1 0
LGALS9C WILD-TYPE 98 70 71 121
'LGALS9C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0348 (Fisher's exact test), Q value = 0.2

Table S12865.  Gene #1260: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LGALS9C MUTATED 2 0 3 0 0
LGALS9C WILD-TYPE 57 75 71 119 38

Figure S3367.  Get High-res Image Gene #1260: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LGALS9C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S12866.  Gene #1260: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LGALS9C MUTATED 1 3 0 1 0
LGALS9C WILD-TYPE 50 73 61 70 95
'LGALS9C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S12867.  Gene #1260: 'LGALS9C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LGALS9C MUTATED 2 1 0 0 2 0 0 0 0
LGALS9C WILD-TYPE 67 47 39 16 51 20 21 38 50
'CHMP4C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S12868.  Gene #1261: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CHMP4C MUTATED 0 1 2
CHMP4C WILD-TYPE 42 172 145
'CHMP4C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.84

Table S12869.  Gene #1261: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CHMP4C MUTATED 1 0 2
CHMP4C WILD-TYPE 61 73 73
'CHMP4C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0791 (Fisher's exact test), Q value = 0.31

Table S12870.  Gene #1261: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CHMP4C MUTATED 0 2 1 0
CHMP4C WILD-TYPE 100 70 71 121
'CHMP4C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0319 (Fisher's exact test), Q value = 0.19

Table S12871.  Gene #1261: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CHMP4C MUTATED 0 0 3 0 0
CHMP4C WILD-TYPE 59 75 71 119 38

Figure S3368.  Get High-res Image Gene #1261: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHMP4C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S12872.  Gene #1261: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CHMP4C MUTATED 1 2 0 0 0
CHMP4C WILD-TYPE 50 74 61 71 95
'CHMP4C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0459 (Fisher's exact test), Q value = 0.23

Table S12873.  Gene #1261: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CHMP4C MUTATED 0 1 0 1 0 1 0 0 0
CHMP4C WILD-TYPE 69 47 39 15 53 19 21 38 50

Figure S3369.  Get High-res Image Gene #1261: 'CHMP4C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF630 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S12874.  Gene #1262: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF630 MUTATED 0 3 4
ZNF630 WILD-TYPE 42 170 143
'ZNF630 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S12875.  Gene #1262: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF630 MUTATED 2 2 1
ZNF630 WILD-TYPE 60 71 74
'ZNF630 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S12876.  Gene #1262: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF630 MUTATED 0 2 3
ZNF630 WILD-TYPE 70 118 97
'ZNF630 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.22

Table S12877.  Gene #1262: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF630 MUTATED 0 0 0 0 0 2 0 0 3
ZNF630 WILD-TYPE 41 26 30 29 39 67 20 14 19

Figure S3370.  Get High-res Image Gene #1262: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ZNF630 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.98

Table S12878.  Gene #1262: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF630 MUTATED 2 2 0 3
ZNF630 WILD-TYPE 98 70 72 118
'ZNF630 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S12879.  Gene #1262: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF630 MUTATED 2 1 1 2 1
ZNF630 WILD-TYPE 57 74 73 117 37
'ZNF630 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S12880.  Gene #1262: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF630 MUTATED 1 2 0 1 3
ZNF630 WILD-TYPE 50 74 61 70 92
'ZNF630 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S12881.  Gene #1262: 'ZNF630 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF630 MUTATED 0 0 1 1 2 0 0 1 2
ZNF630 WILD-TYPE 69 48 38 15 51 20 21 37 48
'PTPDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 0.32

Table S12882.  Gene #1263: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTPDC1 MUTATED 1 1 6
PTPDC1 WILD-TYPE 41 172 141
'PTPDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S12883.  Gene #1263: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTPDC1 MUTATED 2 0 4
PTPDC1 WILD-TYPE 60 73 71
'PTPDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S12884.  Gene #1263: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTPDC1 MUTATED 1 2 4
PTPDC1 WILD-TYPE 69 118 96
'PTPDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S12885.  Gene #1263: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTPDC1 MUTATED 1 0 0 2 0 4 0 0 0
PTPDC1 WILD-TYPE 40 26 30 27 39 65 20 14 22
'PTPDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0663 (Fisher's exact test), Q value = 0.28

Table S12886.  Gene #1263: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTPDC1 MUTATED 0 4 2 2
PTPDC1 WILD-TYPE 100 68 70 119
'PTPDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00403 (Fisher's exact test), Q value = 0.057

Table S12887.  Gene #1263: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTPDC1 MUTATED 0 0 6 1 1
PTPDC1 WILD-TYPE 59 75 68 118 37

Figure S3371.  Get High-res Image Gene #1263: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.072 (Fisher's exact test), Q value = 0.29

Table S12888.  Gene #1263: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTPDC1 MUTATED 0 5 1 0 2
PTPDC1 WILD-TYPE 51 71 60 71 93
'PTPDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.16

Table S12889.  Gene #1263: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTPDC1 MUTATED 1 2 0 3 0 0 0 1 1
PTPDC1 WILD-TYPE 68 46 39 13 53 20 21 37 49

Figure S3372.  Get High-res Image Gene #1263: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DMXL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.1

Table S12890.  Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DMXL2 MUTATED 7 1 1 3 0
DMXL2 WILD-TYPE 25 17 45 24 23

Figure S3373.  Get High-res Image Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DMXL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00183 (Fisher's exact test), Q value = 0.036

Table S12891.  Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DMXL2 MUTATED 9 2 1
DMXL2 WILD-TYPE 34 65 35

Figure S3374.  Get High-res Image Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'DMXL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S12892.  Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DMXL2 MUTATED 0 8 25
DMXL2 WILD-TYPE 42 165 122

Figure S3375.  Get High-res Image Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DMXL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.54

Table S12893.  Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DMXL2 MUTATED 8 4 10
DMXL2 WILD-TYPE 54 69 65
'DMXL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S12894.  Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DMXL2 MUTATED 3 14 12
DMXL2 WILD-TYPE 67 106 88
'DMXL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S12895.  Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DMXL2 MUTATED 3 1 1 4 3 11 2 1 3
DMXL2 WILD-TYPE 38 25 29 25 36 58 18 13 19
'DMXL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.18

Table S12896.  Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DMXL2 MUTATED 3 6 11 13
DMXL2 WILD-TYPE 97 66 61 108

Figure S3376.  Get High-res Image Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DMXL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00748 (Fisher's exact test), Q value = 0.081

Table S12897.  Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DMXL2 MUTATED 5 4 11 5 8
DMXL2 WILD-TYPE 54 71 63 114 30

Figure S3377.  Get High-res Image Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DMXL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S12898.  Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DMXL2 MUTATED 3 10 7 3 9
DMXL2 WILD-TYPE 48 66 54 68 86
'DMXL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S12899.  Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DMXL2 MUTATED 4 8 1 2 5 2 2 6 2
DMXL2 WILD-TYPE 65 40 38 14 48 18 19 32 48
'DMXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S12900.  Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DMXL2 MUTATED 0 1 2 2 3 1
DMXL2 WILD-TYPE 13 15 12 9 8 8
'DMXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00456 (Fisher's exact test), Q value = 0.062

Table S12901.  Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DMXL2 MUTATED 1 0 1 0 0 1 6 0 0
DMXL2 WILD-TYPE 10 7 6 9 8 6 5 9 5

Figure S3378.  Get High-res Image Gene #1264: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DIAPH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S12902.  Gene #1265: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DIAPH3 MUTATED 2 5 9
DIAPH3 WILD-TYPE 40 168 138
'DIAPH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.89

Table S12903.  Gene #1265: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DIAPH3 MUTATED 5 3 6
DIAPH3 WILD-TYPE 57 70 69
'DIAPH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S12904.  Gene #1265: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DIAPH3 MUTATED 2 2 7
DIAPH3 WILD-TYPE 68 118 93
'DIAPH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S12905.  Gene #1265: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DIAPH3 MUTATED 2 1 0 0 1 5 1 0 1
DIAPH3 WILD-TYPE 39 25 30 29 38 64 19 14 21
'DIAPH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S12906.  Gene #1265: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DIAPH3 MUTATED 4 5 5 2
DIAPH3 WILD-TYPE 96 67 67 119
'DIAPH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0641 (Fisher's exact test), Q value = 0.27

Table S12907.  Gene #1265: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DIAPH3 MUTATED 5 5 4 1 1
DIAPH3 WILD-TYPE 54 70 70 118 37
'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S12908.  Gene #1265: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DIAPH3 MUTATED 4 5 4 2 1
DIAPH3 WILD-TYPE 47 71 57 69 94
'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S12909.  Gene #1265: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DIAPH3 MUTATED 3 4 1 3 3 1 0 1 0
DIAPH3 WILD-TYPE 66 44 38 13 50 19 21 37 50
'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12910.  Gene #1265: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DIAPH3 MUTATED 1 1 1 0 0 0
DIAPH3 WILD-TYPE 12 15 13 11 11 9
'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S12911.  Gene #1265: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DIAPH3 MUTATED 1 0 0 1 0 1 0 0 0
DIAPH3 WILD-TYPE 10 7 7 8 8 6 11 9 5
'KLF11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S12912.  Gene #1266: 'KLF11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KLF11 MUTATED 0 3 4
KLF11 WILD-TYPE 42 170 143
'KLF11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S12913.  Gene #1266: 'KLF11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KLF11 MUTATED 2 0 4
KLF11 WILD-TYPE 60 73 71
'KLF11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S12914.  Gene #1266: 'KLF11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KLF11 MUTATED 0 2 2
KLF11 WILD-TYPE 70 118 98
'KLF11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S12915.  Gene #1266: 'KLF11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KLF11 MUTATED 1 0 0 2 0 1 0 0 0
KLF11 WILD-TYPE 40 26 30 27 39 68 20 14 22
'KLF11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S12916.  Gene #1266: 'KLF11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KLF11 MUTATED 2 3 1 1
KLF11 WILD-TYPE 98 69 71 120
'KLF11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S12917.  Gene #1266: 'KLF11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KLF11 MUTATED 2 1 3 0 1
KLF11 WILD-TYPE 57 74 71 119 37
'KLF11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S12918.  Gene #1266: 'KLF11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KLF11 MUTATED 1 2 3 0 1
KLF11 WILD-TYPE 50 74 58 71 94
'KLF11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0214 (Fisher's exact test), Q value = 0.15

Table S12919.  Gene #1266: 'KLF11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KLF11 MUTATED 0 4 0 1 1 0 1 0 0
KLF11 WILD-TYPE 69 44 39 15 52 20 20 38 50

Figure S3379.  Get High-res Image Gene #1266: 'KLF11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TAX1BP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S12920.  Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TAX1BP1 MUTATED 0 0 0 2 1
TAX1BP1 WILD-TYPE 32 18 46 25 22
'TAX1BP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12921.  Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TAX1BP1 MUTATED 1 1 1
TAX1BP1 WILD-TYPE 42 66 35
'TAX1BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00572 (Fisher's exact test), Q value = 0.071

Table S12922.  Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TAX1BP1 MUTATED 1 1 10
TAX1BP1 WILD-TYPE 41 172 137

Figure S3380.  Get High-res Image Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TAX1BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0347 (Fisher's exact test), Q value = 0.2

Table S12923.  Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TAX1BP1 MUTATED 3 0 6
TAX1BP1 WILD-TYPE 59 73 69

Figure S3381.  Get High-res Image Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TAX1BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S12924.  Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TAX1BP1 MUTATED 0 4 6
TAX1BP1 WILD-TYPE 70 116 94
'TAX1BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S12925.  Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TAX1BP1 MUTATED 0 0 1 2 1 6 0 0 0
TAX1BP1 WILD-TYPE 41 26 29 27 38 63 20 14 22
'TAX1BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S12926.  Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TAX1BP1 MUTATED 0 6 3 3
TAX1BP1 WILD-TYPE 100 66 69 118

Figure S3382.  Get High-res Image Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TAX1BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S12927.  Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TAX1BP1 MUTATED 0 0 9 2 1
TAX1BP1 WILD-TYPE 59 75 65 117 37

Figure S3383.  Get High-res Image Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TAX1BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.019

Table S12928.  Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TAX1BP1 MUTATED 0 9 0 1 2
TAX1BP1 WILD-TYPE 51 67 61 70 93

Figure S3384.  Get High-res Image Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TAX1BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.01

Table S12929.  Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TAX1BP1 MUTATED 1 3 0 5 0 1 0 1 1
TAX1BP1 WILD-TYPE 68 45 39 11 53 19 21 37 49

Figure S3385.  Get High-res Image Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TAX1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00679 (Fisher's exact test), Q value = 0.077

Table S12930.  Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TAX1BP1 MUTATED 0 0 0 0 3 0
TAX1BP1 WILD-TYPE 13 16 14 11 8 9

Figure S3386.  Get High-res Image Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TAX1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S12931.  Gene #1267: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TAX1BP1 MUTATED 0 0 0 1 0 0 2 0 0
TAX1BP1 WILD-TYPE 11 7 7 8 8 7 9 9 5
'MCM9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S12932.  Gene #1268: 'MCM9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MCM9 MUTATED 0 2 5
MCM9 WILD-TYPE 42 171 142
'MCM9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.21

Table S12933.  Gene #1268: 'MCM9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MCM9 MUTATED 4 0 1
MCM9 WILD-TYPE 58 73 74

Figure S3387.  Get High-res Image Gene #1268: 'MCM9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MCM9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S12934.  Gene #1268: 'MCM9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MCM9 MUTATED 0 3 2
MCM9 WILD-TYPE 70 117 98
'MCM9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S12935.  Gene #1268: 'MCM9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MCM9 MUTATED 1 1 1 0 1 1 0 0 0
MCM9 WILD-TYPE 40 25 29 29 38 68 20 14 22
'MCM9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.98

Table S12936.  Gene #1268: 'MCM9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MCM9 MUTATED 2 0 2 3
MCM9 WILD-TYPE 98 72 70 118
'MCM9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S12937.  Gene #1268: 'MCM9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MCM9 MUTATED 2 2 0 2 1
MCM9 WILD-TYPE 57 73 74 117 37
'MCM9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S12938.  Gene #1268: 'MCM9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MCM9 MUTATED 1 1 2 0 3
MCM9 WILD-TYPE 50 75 59 71 92
'MCM9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S12939.  Gene #1268: 'MCM9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MCM9 MUTATED 1 2 0 0 1 1 0 1 1
MCM9 WILD-TYPE 68 46 39 16 52 19 21 37 49
'SBDS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.67

Table S12940.  Gene #1269: 'SBDS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SBDS MUTATED 0 3 0
SBDS WILD-TYPE 42 170 147
'SBDS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 0.28

Table S12941.  Gene #1269: 'SBDS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SBDS MUTATED 0 3 0
SBDS WILD-TYPE 62 70 75
'SBDS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S12942.  Gene #1269: 'SBDS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SBDS MUTATED 1 0 2 0
SBDS WILD-TYPE 99 72 70 121
'SBDS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.37

Table S12943.  Gene #1269: 'SBDS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SBDS MUTATED 2 1 0 0 0
SBDS WILD-TYPE 57 74 74 119 38
'SBDS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0597 (Fisher's exact test), Q value = 0.26

Table S12944.  Gene #1269: 'SBDS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SBDS MUTATED 1 0 2 0 0
SBDS WILD-TYPE 50 76 59 71 95
'SBDS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0893 (Fisher's exact test), Q value = 0.32

Table S12945.  Gene #1269: 'SBDS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SBDS MUTATED 0 2 0 0 0 1 0 0 0
SBDS WILD-TYPE 69 46 39 16 53 19 21 38 50
'ANXA11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12946.  Gene #1270: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ANXA11 MUTATED 1 0 1 1 0
ANXA11 WILD-TYPE 31 18 45 26 23
'ANXA11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S12947.  Gene #1270: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ANXA11 MUTATED 1 2 0
ANXA11 WILD-TYPE 42 65 36
'ANXA11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0805 (Fisher's exact test), Q value = 0.31

Table S12948.  Gene #1270: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ANXA11 MUTATED 0 1 6
ANXA11 WILD-TYPE 42 172 141
'ANXA11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S12949.  Gene #1270: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ANXA11 MUTATED 1 0 3
ANXA11 WILD-TYPE 61 73 72
'ANXA11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12950.  Gene #1270: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ANXA11 MUTATED 1 3 2
ANXA11 WILD-TYPE 69 117 98
'ANXA11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S12951.  Gene #1270: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ANXA11 MUTATED 0 0 1 1 2 2 0 0 0
ANXA11 WILD-TYPE 41 26 29 28 37 67 20 14 22
'ANXA11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S12952.  Gene #1270: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ANXA11 MUTATED 1 4 0 2
ANXA11 WILD-TYPE 99 68 72 119
'ANXA11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S12953.  Gene #1270: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ANXA11 MUTATED 0 1 3 2 1
ANXA11 WILD-TYPE 59 74 71 117 37
'ANXA11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 0.28

Table S12954.  Gene #1270: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ANXA11 MUTATED 0 2 0 0 5
ANXA11 WILD-TYPE 51 74 61 71 90
'ANXA11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.5

Table S12955.  Gene #1270: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ANXA11 MUTATED 0 1 1 1 0 1 0 2 1
ANXA11 WILD-TYPE 69 47 38 15 53 19 21 36 49
'OR2A5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0547 (Fisher's exact test), Q value = 0.25

Table S12956.  Gene #1271: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OR2A5 MUTATED 3 0 0 0 0
OR2A5 WILD-TYPE 29 18 46 27 23
'OR2A5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S12957.  Gene #1271: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OR2A5 MUTATED 2 0 1
OR2A5 WILD-TYPE 41 67 35
'OR2A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S12958.  Gene #1271: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR2A5 MUTATED 1 3 6
OR2A5 WILD-TYPE 41 170 141
'OR2A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S12959.  Gene #1271: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR2A5 MUTATED 4 1 1
OR2A5 WILD-TYPE 58 72 74
'OR2A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S12960.  Gene #1271: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR2A5 MUTATED 2 1 5
OR2A5 WILD-TYPE 68 119 95
'OR2A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.62

Table S12961.  Gene #1271: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR2A5 MUTATED 1 0 0 0 3 1 1 1 1
OR2A5 WILD-TYPE 40 26 30 29 36 68 19 13 21
'OR2A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S12962.  Gene #1271: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR2A5 MUTATED 2 1 3 3
OR2A5 WILD-TYPE 98 71 69 118
'OR2A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S12963.  Gene #1271: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR2A5 MUTATED 3 1 2 1 2
OR2A5 WILD-TYPE 56 74 72 118 36
'OR2A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S12964.  Gene #1271: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR2A5 MUTATED 0 3 1 4 2
OR2A5 WILD-TYPE 51 73 60 67 93
'OR2A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S12965.  Gene #1271: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR2A5 MUTATED 3 2 2 0 1 0 0 2 0
OR2A5 WILD-TYPE 66 46 37 16 52 20 21 36 50
'OR2A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S12966.  Gene #1271: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR2A5 MUTATED 0 0 1 1 0 1
OR2A5 WILD-TYPE 13 16 13 10 11 8
'OR2A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S12967.  Gene #1271: 'OR2A5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR2A5 MUTATED 0 0 0 0 0 0 1 2 0
OR2A5 WILD-TYPE 11 7 7 9 8 7 10 7 5
'SLC45A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S12968.  Gene #1272: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC45A2 MUTATED 1 0 1 1 0
SLC45A2 WILD-TYPE 31 18 45 26 23
'SLC45A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S12969.  Gene #1272: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC45A2 MUTATED 0 3 0
SLC45A2 WILD-TYPE 43 64 36
'SLC45A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S12970.  Gene #1272: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC45A2 MUTATED 0 5 4
SLC45A2 WILD-TYPE 42 168 143
'SLC45A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S12971.  Gene #1272: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC45A2 MUTATED 3 0 3
SLC45A2 WILD-TYPE 59 73 72
'SLC45A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S12972.  Gene #1272: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC45A2 MUTATED 0 1 4
SLC45A2 WILD-TYPE 70 119 96
'SLC45A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S12973.  Gene #1272: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC45A2 MUTATED 0 1 0 0 0 3 1 0 0
SLC45A2 WILD-TYPE 41 25 30 29 39 66 19 14 22
'SLC45A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.9

Table S12974.  Gene #1272: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC45A2 MUTATED 1 2 3 3
SLC45A2 WILD-TYPE 99 70 69 118
'SLC45A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S12975.  Gene #1272: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC45A2 MUTATED 1 3 2 3 0
SLC45A2 WILD-TYPE 58 72 72 116 38
'SLC45A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0672 (Fisher's exact test), Q value = 0.28

Table S12976.  Gene #1272: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC45A2 MUTATED 1 5 0 0 3
SLC45A2 WILD-TYPE 50 71 61 71 92
'SLC45A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.54

Table S12977.  Gene #1272: 'SLC45A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC45A2 MUTATED 2 1 0 2 2 0 0 2 0
SLC45A2 WILD-TYPE 67 47 39 14 51 20 21 36 50
'SYNJ1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00766 (Fisher's exact test), Q value = 0.082

Table S12978.  Gene #1273: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SYNJ1 MUTATED 5 0 0 1 0
SYNJ1 WILD-TYPE 27 18 46 26 23

Figure S3388.  Get High-res Image Gene #1273: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SYNJ1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S12979.  Gene #1273: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SYNJ1 MUTATED 4 1 1
SYNJ1 WILD-TYPE 39 66 35
'SYNJ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00104 (Fisher's exact test), Q value = 0.025

Table S12980.  Gene #1273: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SYNJ1 MUTATED 3 1 12
SYNJ1 WILD-TYPE 39 172 135

Figure S3389.  Get High-res Image Gene #1273: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SYNJ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.46

Table S12981.  Gene #1273: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SYNJ1 MUTATED 5 1 4
SYNJ1 WILD-TYPE 57 72 71
'SYNJ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S12982.  Gene #1273: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SYNJ1 MUTATED 1 4 8
SYNJ1 WILD-TYPE 69 116 92
'SYNJ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S12983.  Gene #1273: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SYNJ1 MUTATED 3 0 1 1 2 4 0 1 1
SYNJ1 WILD-TYPE 38 26 29 28 37 65 20 13 21
'SYNJ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S12984.  Gene #1273: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SYNJ1 MUTATED 1 3 6 6
SYNJ1 WILD-TYPE 99 69 66 115
'SYNJ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S12985.  Gene #1273: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SYNJ1 MUTATED 3 1 6 3 3
SYNJ1 WILD-TYPE 56 74 68 116 35
'SYNJ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.94

Table S12986.  Gene #1273: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SYNJ1 MUTATED 2 4 3 1 6
SYNJ1 WILD-TYPE 49 72 58 70 89
'SYNJ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S12987.  Gene #1273: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SYNJ1 MUTATED 3 4 1 1 1 1 1 4 0
SYNJ1 WILD-TYPE 66 44 38 15 52 19 20 34 50
'SYNJ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S12988.  Gene #1273: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SYNJ1 MUTATED 0 1 1 0 2 1
SYNJ1 WILD-TYPE 13 15 13 11 9 8
'SYNJ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.94

Table S12989.  Gene #1273: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SYNJ1 MUTATED 2 0 0 1 0 0 2 0 0
SYNJ1 WILD-TYPE 9 7 7 8 8 7 9 9 5
'SLC9A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.16

Table S12990.  Gene #1274: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC9A2 MUTATED 1 1 8
SLC9A2 WILD-TYPE 41 172 139

Figure S3390.  Get High-res Image Gene #1274: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC9A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.077 (Fisher's exact test), Q value = 0.3

Table S12991.  Gene #1274: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC9A2 MUTATED 4 0 4
SLC9A2 WILD-TYPE 58 73 71
'SLC9A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S12992.  Gene #1274: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC9A2 MUTATED 0 4 3
SLC9A2 WILD-TYPE 70 116 97
'SLC9A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.95

Table S12993.  Gene #1274: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC9A2 MUTATED 2 1 0 2 0 2 0 0 0
SLC9A2 WILD-TYPE 39 25 30 27 39 67 20 14 22
'SLC9A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.15

Table S12994.  Gene #1274: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC9A2 MUTATED 0 5 3 2
SLC9A2 WILD-TYPE 100 67 69 119

Figure S3391.  Get High-res Image Gene #1274: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC9A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.12

Table S12995.  Gene #1274: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC9A2 MUTATED 2 1 5 0 2
SLC9A2 WILD-TYPE 57 74 69 119 36

Figure S3392.  Get High-res Image Gene #1274: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC9A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S12996.  Gene #1274: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC9A2 MUTATED 0 4 3 1 2
SLC9A2 WILD-TYPE 51 72 58 70 93
'SLC9A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S12997.  Gene #1274: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC9A2 MUTATED 1 3 0 2 1 0 1 1 1
SLC9A2 WILD-TYPE 68 45 39 14 52 20 20 37 49
'SLC9A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.75

Table S12998.  Gene #1274: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLC9A2 MUTATED 0 2 0 0 1 0
SLC9A2 WILD-TYPE 13 14 14 11 10 9
'SLC9A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S12999.  Gene #1274: 'SLC9A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLC9A2 MUTATED 0 1 0 1 0 1 0 0 0
SLC9A2 WILD-TYPE 11 6 7 8 8 6 11 9 5
'DUSP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S13000.  Gene #1275: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DUSP7 MUTATED 0 2 4
DUSP7 WILD-TYPE 42 171 143
'DUSP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S13001.  Gene #1275: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DUSP7 MUTATED 0 2 3
DUSP7 WILD-TYPE 62 71 72
'DUSP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 0.32

Table S13002.  Gene #1275: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DUSP7 MUTATED 2 0 3
DUSP7 WILD-TYPE 68 120 97
'DUSP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S13003.  Gene #1275: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DUSP7 MUTATED 1 0 0 0 1 3 0 0 0
DUSP7 WILD-TYPE 40 26 30 29 38 66 20 14 22
'DUSP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0526 (Fisher's exact test), Q value = 0.25

Table S13004.  Gene #1275: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DUSP7 MUTATED 1 4 0 1
DUSP7 WILD-TYPE 99 68 72 120
'DUSP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S13005.  Gene #1275: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DUSP7 MUTATED 0 3 2 1 0
DUSP7 WILD-TYPE 59 72 72 118 38
'DUSP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S13006.  Gene #1275: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DUSP7 MUTATED 1 3 1 0 1
DUSP7 WILD-TYPE 50 73 60 71 94
'DUSP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S13007.  Gene #1275: 'DUSP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DUSP7 MUTATED 1 1 0 1 2 1 0 0 0
DUSP7 WILD-TYPE 68 47 39 15 51 19 21 38 50
'EFCAB4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S13008.  Gene #1276: 'EFCAB4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EFCAB4B MUTATED 0 1 4
EFCAB4B WILD-TYPE 42 172 143
'EFCAB4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S13009.  Gene #1276: 'EFCAB4B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EFCAB4B MUTATED 0 1 3
EFCAB4B WILD-TYPE 62 72 72
'EFCAB4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S13010.  Gene #1276: 'EFCAB4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EFCAB4B MUTATED 2 0 1
EFCAB4B WILD-TYPE 68 120 99
'EFCAB4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S13011.  Gene #1276: 'EFCAB4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EFCAB4B MUTATED 1 1 0 0 0 1 0 0 0
EFCAB4B WILD-TYPE 40 25 30 29 39 68 20 14 22
'EFCAB4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S13012.  Gene #1276: 'EFCAB4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EFCAB4B MUTATED 1 3 0 1
EFCAB4B WILD-TYPE 99 69 72 120
'EFCAB4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0576 (Fisher's exact test), Q value = 0.26

Table S13013.  Gene #1276: 'EFCAB4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EFCAB4B MUTATED 1 0 3 0 1
EFCAB4B WILD-TYPE 58 75 71 119 37
'EFCAB4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S13014.  Gene #1276: 'EFCAB4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EFCAB4B MUTATED 0 3 1 1 0
EFCAB4B WILD-TYPE 51 73 60 70 95
'EFCAB4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S13015.  Gene #1276: 'EFCAB4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EFCAB4B MUTATED 2 1 0 1 0 0 0 1 0
EFCAB4B WILD-TYPE 67 47 39 15 53 20 21 37 50
'PAK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S13016.  Gene #1277: 'PAK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PAK1 MUTATED 2 0 0 1 0
PAK1 WILD-TYPE 30 18 46 26 23
'PAK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13017.  Gene #1277: 'PAK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PAK1 MUTATED 1 1 1
PAK1 WILD-TYPE 42 66 35
'PAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00121 (Fisher's exact test), Q value = 0.028

Table S13018.  Gene #1277: 'PAK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PAK1 MUTATED 1 0 9
PAK1 WILD-TYPE 41 173 138

Figure S3393.  Get High-res Image Gene #1277: 'PAK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0791 (Fisher's exact test), Q value = 0.31

Table S13019.  Gene #1277: 'PAK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PAK1 MUTATED 4 0 2
PAK1 WILD-TYPE 58 73 73
'PAK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0769 (Fisher's exact test), Q value = 0.3

Table S13020.  Gene #1277: 'PAK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PAK1 MUTATED 1 1 6
PAK1 WILD-TYPE 69 119 94
'PAK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S13021.  Gene #1277: 'PAK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PAK1 MUTATED 1 0 2 0 1 4 0 0 0
PAK1 WILD-TYPE 40 26 28 29 38 65 20 14 22
'PAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S13022.  Gene #1277: 'PAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PAK1 MUTATED 1 3 2 4
PAK1 WILD-TYPE 99 69 70 117
'PAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.93

Table S13023.  Gene #1277: 'PAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PAK1 MUTATED 1 2 3 2 2
PAK1 WILD-TYPE 58 73 71 117 36
'PAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S13024.  Gene #1277: 'PAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PAK1 MUTATED 0 4 1 1 4
PAK1 WILD-TYPE 51 72 60 70 91
'PAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S13025.  Gene #1277: 'PAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PAK1 MUTATED 2 1 0 1 2 1 0 2 1
PAK1 WILD-TYPE 67 47 39 15 51 19 21 36 49
'OR4N4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.48

Table S13026.  Gene #1278: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OR4N4 MUTATED 1 0 0 2 0
OR4N4 WILD-TYPE 31 18 46 25 23
'OR4N4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S13027.  Gene #1278: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OR4N4 MUTATED 2 1 0
OR4N4 WILD-TYPE 41 66 36
'OR4N4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S13028.  Gene #1278: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR4N4 MUTATED 0 5 7
OR4N4 WILD-TYPE 42 168 140
'OR4N4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.99

Table S13029.  Gene #1278: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR4N4 MUTATED 3 4 2
OR4N4 WILD-TYPE 59 69 73
'OR4N4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S13030.  Gene #1278: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR4N4 MUTATED 1 5 6
OR4N4 WILD-TYPE 69 115 94
'OR4N4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S13031.  Gene #1278: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR4N4 MUTATED 1 0 1 0 2 3 1 3 1
OR4N4 WILD-TYPE 40 26 29 29 37 66 19 11 21
'OR4N4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S13032.  Gene #1278: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR4N4 MUTATED 4 3 2 3
OR4N4 WILD-TYPE 96 69 70 118
'OR4N4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.62

Table S13033.  Gene #1278: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR4N4 MUTATED 3 3 3 1 2
OR4N4 WILD-TYPE 56 72 71 118 36
'OR4N4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S13034.  Gene #1278: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR4N4 MUTATED 1 4 2 2 2
OR4N4 WILD-TYPE 50 72 59 69 93
'OR4N4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S13035.  Gene #1278: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR4N4 MUTATED 3 2 2 1 0 2 0 1 0
OR4N4 WILD-TYPE 66 46 37 15 53 18 21 37 50
'OR4N4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.2

Table S13036.  Gene #1278: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR4N4 MUTATED 1 0 0 3 0 1
OR4N4 WILD-TYPE 12 16 14 8 11 8

Figure S3394.  Get High-res Image Gene #1278: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'OR4N4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S13037.  Gene #1278: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR4N4 MUTATED 0 0 1 1 0 0 1 2 0
OR4N4 WILD-TYPE 11 7 6 8 8 7 10 7 5
'IFI44 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S13038.  Gene #1279: 'IFI44 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IFI44 MUTATED 0 2 6
IFI44 WILD-TYPE 42 171 141
'IFI44 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S13039.  Gene #1279: 'IFI44 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IFI44 MUTATED 3 1 2
IFI44 WILD-TYPE 59 72 73
'IFI44 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S13040.  Gene #1279: 'IFI44 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IFI44 MUTATED 0 2 5
IFI44 WILD-TYPE 70 118 95
'IFI44 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S13041.  Gene #1279: 'IFI44 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IFI44 MUTATED 1 0 0 0 1 3 0 1 1
IFI44 WILD-TYPE 40 26 30 29 38 66 20 13 21
'IFI44 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.99

Table S13042.  Gene #1279: 'IFI44 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IFI44 MUTATED 2 3 1 2
IFI44 WILD-TYPE 98 69 71 119
'IFI44 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0841 (Fisher's exact test), Q value = 0.31

Table S13043.  Gene #1279: 'IFI44 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IFI44 MUTATED 1 3 2 0 2
IFI44 WILD-TYPE 58 72 72 119 36
'IFI44 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S13044.  Gene #1279: 'IFI44 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IFI44 MUTATED 1 2 1 1 3
IFI44 WILD-TYPE 50 74 60 70 92
'IFI44 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S13045.  Gene #1279: 'IFI44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IFI44 MUTATED 1 1 2 0 0 1 0 2 1
IFI44 WILD-TYPE 68 47 37 16 53 19 21 36 49
'IPPK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S13046.  Gene #1280: 'IPPK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IPPK MUTATED 0 3 6
IPPK WILD-TYPE 42 170 141
'IPPK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.072 (Fisher's exact test), Q value = 0.29

Table S13047.  Gene #1280: 'IPPK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IPPK MUTATED 5 1 1
IPPK WILD-TYPE 57 72 74
'IPPK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0065 (Fisher's exact test), Q value = 0.075

Table S13048.  Gene #1280: 'IPPK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IPPK MUTATED 0 1 7
IPPK WILD-TYPE 70 119 93

Figure S3395.  Get High-res Image Gene #1280: 'IPPK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'IPPK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.79

Table S13049.  Gene #1280: 'IPPK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IPPK MUTATED 1 0 0 0 1 4 2 0 0
IPPK WILD-TYPE 40 26 30 29 38 65 18 14 22
'IPPK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S13050.  Gene #1280: 'IPPK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IPPK MUTATED 1 2 4 2
IPPK WILD-TYPE 99 70 68 119
'IPPK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S13051.  Gene #1280: 'IPPK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IPPK MUTATED 2 2 3 1 1
IPPK WILD-TYPE 57 73 71 118 37
'IPPK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.17

Table S13052.  Gene #1280: 'IPPK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IPPK MUTATED 0 6 1 0 2
IPPK WILD-TYPE 51 70 60 71 93

Figure S3396.  Get High-res Image Gene #1280: 'IPPK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IPPK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S13053.  Gene #1280: 'IPPK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IPPK MUTATED 0 4 1 0 2 1 0 1 0
IPPK WILD-TYPE 69 44 38 16 51 19 21 37 50
'IPPK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S13054.  Gene #1280: 'IPPK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IPPK MUTATED 1 0 1 0 1 0
IPPK WILD-TYPE 12 16 13 11 10 9
'IPPK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S13055.  Gene #1280: 'IPPK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IPPK MUTATED 0 0 0 0 0 1 1 1 0
IPPK WILD-TYPE 11 7 7 9 8 6 10 8 5
'SPATA16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.22

Table S13056.  Gene #1281: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SPATA16 MUTATED 4 1 0 2 0
SPATA16 WILD-TYPE 28 17 46 25 23

Figure S3397.  Get High-res Image Gene #1281: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SPATA16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0336 (Fisher's exact test), Q value = 0.19

Table S13057.  Gene #1281: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SPATA16 MUTATED 5 2 0
SPATA16 WILD-TYPE 38 65 36

Figure S3398.  Get High-res Image Gene #1281: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SPATA16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.21

Table S13058.  Gene #1281: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SPATA16 MUTATED 1 2 9
SPATA16 WILD-TYPE 41 171 138

Figure S3399.  Get High-res Image Gene #1281: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SPATA16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.78

Table S13059.  Gene #1281: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SPATA16 MUTATED 3 1 1
SPATA16 WILD-TYPE 59 72 74
'SPATA16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S13060.  Gene #1281: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SPATA16 MUTATED 0 5 5
SPATA16 WILD-TYPE 70 115 95
'SPATA16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S13061.  Gene #1281: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SPATA16 MUTATED 2 1 1 1 1 2 0 1 1
SPATA16 WILD-TYPE 39 25 29 28 38 67 20 13 21
'SPATA16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S13062.  Gene #1281: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SPATA16 MUTATED 2 2 2 6
SPATA16 WILD-TYPE 98 70 70 115
'SPATA16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 0.17

Table S13063.  Gene #1281: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SPATA16 MUTATED 2 1 2 2 5
SPATA16 WILD-TYPE 57 74 72 117 33

Figure S3400.  Get High-res Image Gene #1281: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SPATA16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S13064.  Gene #1281: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SPATA16 MUTATED 1 2 2 0 5
SPATA16 WILD-TYPE 50 74 59 71 90
'SPATA16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0677 (Fisher's exact test), Q value = 0.28

Table S13065.  Gene #1281: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SPATA16 MUTATED 0 1 1 2 1 2 0 2 1
SPATA16 WILD-TYPE 69 47 38 14 52 18 21 36 49
'SPATA16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.52

Table S13066.  Gene #1281: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SPATA16 MUTATED 0 1 0 0 2 0
SPATA16 WILD-TYPE 13 15 14 11 9 9
'SPATA16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S13067.  Gene #1281: 'SPATA16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SPATA16 MUTATED 0 1 0 2 0 0 0 0 0
SPATA16 WILD-TYPE 11 6 7 7 8 7 11 9 5
'ACAN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00322 (Fisher's exact test), Q value = 0.05

Table S13068.  Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ACAN MUTATED 5 0 0 4 0
ACAN WILD-TYPE 27 18 46 23 23

Figure S3401.  Get High-res Image Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ACAN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0535 (Fisher's exact test), Q value = 0.25

Table S13069.  Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ACAN MUTATED 6 2 1
ACAN WILD-TYPE 37 65 35
'ACAN MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S13070.  Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ACAN MUTATED 2 3 21
ACAN WILD-TYPE 40 170 126

Figure S3402.  Get High-res Image Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ACAN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S13071.  Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ACAN MUTATED 8 1 9
ACAN WILD-TYPE 54 72 66

Figure S3403.  Get High-res Image Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ACAN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 0.93

Table S13072.  Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ACAN MUTATED 5 9 11
ACAN WILD-TYPE 65 111 89
'ACAN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S13073.  Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ACAN MUTATED 3 2 2 3 5 8 2 0 0
ACAN WILD-TYPE 38 24 28 26 34 61 18 14 22
'ACAN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S13074.  Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ACAN MUTATED 2 9 9 7
ACAN WILD-TYPE 98 63 63 114

Figure S3404.  Get High-res Image Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ACAN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S13075.  Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ACAN MUTATED 4 3 10 6 4
ACAN WILD-TYPE 55 72 64 113 34
'ACAN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.14

Table S13076.  Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ACAN MUTATED 1 12 3 2 8
ACAN WILD-TYPE 50 64 58 69 87

Figure S3405.  Get High-res Image Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ACAN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 0.17

Table S13077.  Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ACAN MUTATED 5 6 0 2 4 2 1 6 0
ACAN WILD-TYPE 64 42 39 14 49 18 20 32 50

Figure S3406.  Get High-res Image Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ACAN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S13078.  Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ACAN MUTATED 1 2 1 1 2 0
ACAN WILD-TYPE 12 14 13 10 9 9
'ACAN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0474 (Fisher's exact test), Q value = 0.23

Table S13079.  Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ACAN MUTATED 0 0 0 0 1 1 4 0 1
ACAN WILD-TYPE 11 7 7 9 7 6 7 9 4

Figure S3407.  Get High-res Image Gene #1282: 'ACAN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C16ORF88 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S13080.  Gene #1283: 'C16ORF88 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C16ORF88 MUTATED 1 0 6
C16ORF88 WILD-TYPE 41 173 141

Figure S3408.  Get High-res Image Gene #1283: 'C16ORF88 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C16ORF88 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S13081.  Gene #1283: 'C16ORF88 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C16ORF88 MUTATED 2 0 3
C16ORF88 WILD-TYPE 60 73 72
'C16ORF88 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.78

Table S13082.  Gene #1283: 'C16ORF88 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C16ORF88 MUTATED 0 3 3
C16ORF88 WILD-TYPE 70 117 97
'C16ORF88 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S13083.  Gene #1283: 'C16ORF88 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C16ORF88 MUTATED 0 0 1 2 0 3 0 0 0
C16ORF88 WILD-TYPE 41 26 29 27 39 66 20 14 22
'C16ORF88 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00654 (Fisher's exact test), Q value = 0.076

Table S13084.  Gene #1283: 'C16ORF88 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C16ORF88 MUTATED 0 5 0 2
C16ORF88 WILD-TYPE 100 67 72 119

Figure S3409.  Get High-res Image Gene #1283: 'C16ORF88 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C16ORF88 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S13085.  Gene #1283: 'C16ORF88 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C16ORF88 MUTATED 0 1 4 1 1
C16ORF88 WILD-TYPE 59 74 70 118 37
'C16ORF88 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 0.23

Table S13086.  Gene #1283: 'C16ORF88 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C16ORF88 MUTATED 0 5 0 1 1
C16ORF88 WILD-TYPE 51 71 61 70 94

Figure S3410.  Get High-res Image Gene #1283: 'C16ORF88 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C16ORF88 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S13087.  Gene #1283: 'C16ORF88 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C16ORF88 MUTATED 2 1 0 1 1 0 0 1 1
C16ORF88 WILD-TYPE 67 47 39 15 52 20 21 37 49
'ABCG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.74

Table S13088.  Gene #1284: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ABCG2 MUTATED 3 0 1 1 0
ABCG2 WILD-TYPE 29 18 45 26 23
'ABCG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S13089.  Gene #1284: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ABCG2 MUTATED 3 2 0
ABCG2 WILD-TYPE 40 65 36
'ABCG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S13090.  Gene #1284: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ABCG2 MUTATED 0 5 7
ABCG2 WILD-TYPE 42 168 140
'ABCG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S13091.  Gene #1284: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ABCG2 MUTATED 2 3 2
ABCG2 WILD-TYPE 60 70 73
'ABCG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.14

Table S13092.  Gene #1284: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ABCG2 MUTATED 0 3 8
ABCG2 WILD-TYPE 70 117 92

Figure S3411.  Get High-res Image Gene #1284: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ABCG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S13093.  Gene #1284: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ABCG2 MUTATED 2 0 3 0 0 6 0 0 0
ABCG2 WILD-TYPE 39 26 27 29 39 63 20 14 22
'ABCG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S13094.  Gene #1284: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ABCG2 MUTATED 4 1 3 4
ABCG2 WILD-TYPE 96 71 69 117
'ABCG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13095.  Gene #1284: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ABCG2 MUTATED 2 3 2 4 1
ABCG2 WILD-TYPE 57 72 72 115 37
'ABCG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13096.  Gene #1284: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ABCG2 MUTATED 2 2 2 2 3
ABCG2 WILD-TYPE 49 74 59 69 92
'ABCG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S13097.  Gene #1284: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ABCG2 MUTATED 3 2 1 1 1 1 1 1 0
ABCG2 WILD-TYPE 66 46 38 15 52 19 20 37 50
'ABCG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.79

Table S13098.  Gene #1284: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ABCG2 MUTATED 2 0 1 1 0 0
ABCG2 WILD-TYPE 11 16 13 10 11 9
'ABCG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S13099.  Gene #1284: 'ABCG2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ABCG2 MUTATED 0 0 1 1 0 0 1 0 1
ABCG2 WILD-TYPE 11 7 6 8 8 7 10 9 4
'EPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.92

Table S13100.  Gene #1285: 'EPC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EPC1 MUTATED 1 5 7
EPC1 WILD-TYPE 41 168 140
'EPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S13101.  Gene #1285: 'EPC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EPC1 MUTATED 4 2 5
EPC1 WILD-TYPE 58 71 70
'EPC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.63

Table S13102.  Gene #1285: 'EPC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EPC1 MUTATED 1 5 6
EPC1 WILD-TYPE 69 115 94
'EPC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S13103.  Gene #1285: 'EPC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EPC1 MUTATED 4 0 2 2 0 2 2 0 0
EPC1 WILD-TYPE 37 26 28 27 39 67 18 14 22
'EPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0952 (Fisher's exact test), Q value = 0.34

Table S13104.  Gene #1285: 'EPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EPC1 MUTATED 2 3 6 2
EPC1 WILD-TYPE 98 69 66 119
'EPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0771 (Fisher's exact test), Q value = 0.3

Table S13105.  Gene #1285: 'EPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EPC1 MUTATED 5 2 4 1 1
EPC1 WILD-TYPE 54 73 70 118 37
'EPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S13106.  Gene #1285: 'EPC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EPC1 MUTATED 3 5 2 1 2
EPC1 WILD-TYPE 48 71 59 70 93
'EPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S13107.  Gene #1285: 'EPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EPC1 MUTATED 4 5 0 1 1 1 0 1 0
EPC1 WILD-TYPE 65 43 39 15 52 19 21 37 50
'EPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.18

Table S13108.  Gene #1285: 'EPC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EPC1 MUTATED 0 0 0 1 3 1
EPC1 WILD-TYPE 13 16 14 10 8 8

Figure S3412.  Get High-res Image Gene #1285: 'EPC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'EPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S13109.  Gene #1285: 'EPC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EPC1 MUTATED 1 0 1 1 0 1 1 0 0
EPC1 WILD-TYPE 10 7 6 8 8 6 10 9 5
'PTPN3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S13110.  Gene #1286: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PTPN3 MUTATED 2 0 1 2 0
PTPN3 WILD-TYPE 30 18 45 25 23
'PTPN3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S13111.  Gene #1286: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PTPN3 MUTATED 2 1 2
PTPN3 WILD-TYPE 41 66 34
'PTPN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S13112.  Gene #1286: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTPN3 MUTATED 2 5 8
PTPN3 WILD-TYPE 40 168 139
'PTPN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S13113.  Gene #1286: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTPN3 MUTATED 2 4 4
PTPN3 WILD-TYPE 60 69 71
'PTPN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S13114.  Gene #1286: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTPN3 MUTATED 2 6 4
PTPN3 WILD-TYPE 68 114 96
'PTPN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.58

Table S13115.  Gene #1286: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTPN3 MUTATED 3 0 1 3 0 3 2 0 0
PTPN3 WILD-TYPE 38 26 29 26 39 66 18 14 22
'PTPN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S13116.  Gene #1286: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTPN3 MUTATED 4 4 2 5
PTPN3 WILD-TYPE 96 68 70 116
'PTPN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.37

Table S13117.  Gene #1286: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTPN3 MUTATED 0 4 6 3 2
PTPN3 WILD-TYPE 59 71 68 116 36
'PTPN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.14

Table S13118.  Gene #1286: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTPN3 MUTATED 2 8 0 1 3
PTPN3 WILD-TYPE 49 68 61 70 92

Figure S3413.  Get High-res Image Gene #1286: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PTPN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S13119.  Gene #1286: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTPN3 MUTATED 2 2 3 2 3 1 0 1 0
PTPN3 WILD-TYPE 67 46 36 14 50 19 21 37 50
'DGKH MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0997 (Fisher's exact test), Q value = 0.34

Table S13120.  Gene #1287: 'DGKH MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DGKH MUTATED 3 0 0 1 0
DGKH WILD-TYPE 29 18 46 26 23
'DGKH MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S13121.  Gene #1287: 'DGKH MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DGKH MUTATED 3 1 0
DGKH WILD-TYPE 40 66 36
'DGKH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S13122.  Gene #1287: 'DGKH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DGKH MUTATED 2 6 6
DGKH WILD-TYPE 40 167 141
'DGKH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S13123.  Gene #1287: 'DGKH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DGKH MUTATED 4 4 2
DGKH WILD-TYPE 58 69 73
'DGKH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0756 (Fisher's exact test), Q value = 0.3

Table S13124.  Gene #1287: 'DGKH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DGKH MUTATED 1 3 8
DGKH WILD-TYPE 69 117 92
'DGKH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.74

Table S13125.  Gene #1287: 'DGKH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DGKH MUTATED 1 1 1 1 0 4 3 0 1
DGKH WILD-TYPE 40 25 29 28 39 65 17 14 21
'DGKH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S13126.  Gene #1287: 'DGKH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DGKH MUTATED 4 3 4 4
DGKH WILD-TYPE 96 69 68 117
'DGKH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0943 (Fisher's exact test), Q value = 0.33

Table S13127.  Gene #1287: 'DGKH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DGKH MUTATED 3 3 5 1 3
DGKH WILD-TYPE 56 72 69 118 35
'DGKH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S13128.  Gene #1287: 'DGKH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DGKH MUTATED 2 4 2 2 5
DGKH WILD-TYPE 49 72 59 69 90
'DGKH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S13129.  Gene #1287: 'DGKH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DGKH MUTATED 4 2 0 0 3 1 1 4 0
DGKH WILD-TYPE 65 46 39 16 50 19 20 34 50
'DGKH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S13130.  Gene #1287: 'DGKH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DGKH MUTATED 1 2 0 1 0 1
DGKH WILD-TYPE 12 14 14 10 11 8
'DGKH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S13131.  Gene #1287: 'DGKH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DGKH MUTATED 1 1 0 0 0 0 1 1 1
DGKH WILD-TYPE 10 6 7 9 8 7 10 8 4
'LEMD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S13132.  Gene #1288: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LEMD1 MUTATED 0 0 3
LEMD1 WILD-TYPE 42 173 144
'LEMD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S13133.  Gene #1288: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LEMD1 MUTATED 0 0 3
LEMD1 WILD-TYPE 62 73 72
'LEMD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0809 (Fisher's exact test), Q value = 0.31

Table S13134.  Gene #1288: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LEMD1 MUTATED 0 2 1 0
LEMD1 WILD-TYPE 100 70 71 121
'LEMD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0318 (Fisher's exact test), Q value = 0.19

Table S13135.  Gene #1288: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LEMD1 MUTATED 0 0 3 0 0
LEMD1 WILD-TYPE 59 75 71 119 38

Figure S3414.  Get High-res Image Gene #1288: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LEMD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S13136.  Gene #1288: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LEMD1 MUTATED 0 2 1 0 0
LEMD1 WILD-TYPE 51 74 60 71 95
'LEMD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S13137.  Gene #1288: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LEMD1 MUTATED 1 1 0 1 0 0 0 0 0
LEMD1 WILD-TYPE 68 47 39 15 53 20 21 38 50
'ABCD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.34

Table S13138.  Gene #1289: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ABCD4 MUTATED 3 0 0 1 0
ABCD4 WILD-TYPE 29 18 46 26 23
'ABCD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.095

Table S13139.  Gene #1289: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ABCD4 MUTATED 4 0 0
ABCD4 WILD-TYPE 39 67 36

Figure S3415.  Get High-res Image Gene #1289: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ABCD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.014

Table S13140.  Gene #1289: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ABCD4 MUTATED 0 0 10
ABCD4 WILD-TYPE 42 173 137

Figure S3416.  Get High-res Image Gene #1289: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ABCD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.37

Table S13141.  Gene #1289: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ABCD4 MUTATED 2 0 4
ABCD4 WILD-TYPE 60 73 71
'ABCD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S13142.  Gene #1289: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ABCD4 MUTATED 1 2 4
ABCD4 WILD-TYPE 69 118 96
'ABCD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.95

Table S13143.  Gene #1289: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ABCD4 MUTATED 0 0 1 0 1 4 1 0 0
ABCD4 WILD-TYPE 41 26 29 29 38 65 19 14 22
'ABCD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S13144.  Gene #1289: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ABCD4 MUTATED 0 3 3 4
ABCD4 WILD-TYPE 100 69 69 117
'ABCD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00094 (Fisher's exact test), Q value = 0.024

Table S13145.  Gene #1289: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ABCD4 MUTATED 0 0 6 1 3
ABCD4 WILD-TYPE 59 75 68 118 35

Figure S3417.  Get High-res Image Gene #1289: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ABCD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0824 (Fisher's exact test), Q value = 0.31

Table S13146.  Gene #1289: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ABCD4 MUTATED 0 5 1 0 3
ABCD4 WILD-TYPE 51 71 60 71 92
'ABCD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.005 (Fisher's exact test), Q value = 0.066

Table S13147.  Gene #1289: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ABCD4 MUTATED 2 1 0 3 0 0 2 1 0
ABCD4 WILD-TYPE 67 47 39 13 53 20 19 37 50

Figure S3418.  Get High-res Image Gene #1289: 'ABCD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HCLS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S13148.  Gene #1290: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HCLS1 MUTATED 4 0 1 2 0
HCLS1 WILD-TYPE 28 18 45 25 23
'HCLS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S13149.  Gene #1290: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HCLS1 MUTATED 4 3 0
HCLS1 WILD-TYPE 39 64 36
'HCLS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00201 (Fisher's exact test), Q value = 0.038

Table S13150.  Gene #1290: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HCLS1 MUTATED 0 2 13
HCLS1 WILD-TYPE 42 171 134

Figure S3419.  Get High-res Image Gene #1290: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HCLS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S13151.  Gene #1290: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HCLS1 MUTATED 4 1 3
HCLS1 WILD-TYPE 58 72 72
'HCLS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S13152.  Gene #1290: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HCLS1 MUTATED 2 4 5
HCLS1 WILD-TYPE 68 116 95
'HCLS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S13153.  Gene #1290: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HCLS1 MUTATED 3 0 2 1 0 5 0 0 0
HCLS1 WILD-TYPE 38 26 28 28 39 64 20 14 22
'HCLS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S13154.  Gene #1290: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HCLS1 MUTATED 1 4 3 7
HCLS1 WILD-TYPE 99 68 69 114
'HCLS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S13155.  Gene #1290: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HCLS1 MUTATED 2 1 5 3 4
HCLS1 WILD-TYPE 57 74 69 116 34
'HCLS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S13156.  Gene #1290: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HCLS1 MUTATED 0 4 2 1 7
HCLS1 WILD-TYPE 51 72 59 70 88
'HCLS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00831 (Fisher's exact test), Q value = 0.086

Table S13157.  Gene #1290: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HCLS1 MUTATED 1 4 0 2 0 2 0 4 1
HCLS1 WILD-TYPE 68 44 39 14 53 18 21 34 49

Figure S3420.  Get High-res Image Gene #1290: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SULT1C4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S13158.  Gene #1291: 'SULT1C4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SULT1C4 MUTATED 1 0 0 2 0
SULT1C4 WILD-TYPE 31 18 46 25 23
'SULT1C4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0381 (Fisher's exact test), Q value = 0.21

Table S13159.  Gene #1291: 'SULT1C4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SULT1C4 MUTATED 3 0 0
SULT1C4 WILD-TYPE 40 67 36

Figure S3421.  Get High-res Image Gene #1291: 'SULT1C4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SULT1C4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S13160.  Gene #1291: 'SULT1C4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SULT1C4 MUTATED 0 0 3
SULT1C4 WILD-TYPE 42 173 144
'SULT1C4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S13161.  Gene #1291: 'SULT1C4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SULT1C4 MUTATED 1 0 0 2
SULT1C4 WILD-TYPE 99 72 72 119
'SULT1C4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.16

Table S13162.  Gene #1291: 'SULT1C4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SULT1C4 MUTATED 0 1 0 0 2
SULT1C4 WILD-TYPE 59 74 74 119 36

Figure S3422.  Get High-res Image Gene #1291: 'SULT1C4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRAF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0805 (Fisher's exact test), Q value = 0.31

Table S13163.  Gene #1292: 'TRAF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRAF2 MUTATED 0 1 6
TRAF2 WILD-TYPE 42 172 141
'TRAF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.18

Table S13164.  Gene #1292: 'TRAF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRAF2 MUTATED 1 0 5
TRAF2 WILD-TYPE 61 73 70

Figure S3423.  Get High-res Image Gene #1292: 'TRAF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TRAF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S13165.  Gene #1292: 'TRAF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRAF2 MUTATED 2 2 2
TRAF2 WILD-TYPE 68 118 98
'TRAF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S13166.  Gene #1292: 'TRAF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRAF2 MUTATED 1 0 0 0 1 2 0 2 0
TRAF2 WILD-TYPE 40 26 30 29 38 67 20 12 22
'TRAF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S13167.  Gene #1292: 'TRAF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRAF2 MUTATED 1 4 1 1
TRAF2 WILD-TYPE 99 68 71 120
'TRAF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0296 (Fisher's exact test), Q value = 0.18

Table S13168.  Gene #1292: 'TRAF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRAF2 MUTATED 0 2 4 0 1
TRAF2 WILD-TYPE 59 73 70 119 37

Figure S3424.  Get High-res Image Gene #1292: 'TRAF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRAF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S13169.  Gene #1292: 'TRAF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRAF2 MUTATED 2 3 0 0 2
TRAF2 WILD-TYPE 49 73 61 71 93
'TRAF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.49

Table S13170.  Gene #1292: 'TRAF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRAF2 MUTATED 1 1 0 1 1 2 0 1 0
TRAF2 WILD-TYPE 68 47 39 15 52 18 21 37 50
'ZNF564 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0524 (Fisher's exact test), Q value = 0.25

Table S13171.  Gene #1293: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF564 MUTATED 1 0 0 3 0
ZNF564 WILD-TYPE 31 18 46 24 23
'ZNF564 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S13172.  Gene #1293: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF564 MUTATED 2 1 1
ZNF564 WILD-TYPE 41 66 35
'ZNF564 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S13173.  Gene #1293: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF564 MUTATED 1 1 8
ZNF564 WILD-TYPE 41 172 139

Figure S3425.  Get High-res Image Gene #1293: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF564 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13174.  Gene #1293: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF564 MUTATED 2 2 2
ZNF564 WILD-TYPE 60 71 73
'ZNF564 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S13175.  Gene #1293: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF564 MUTATED 0 4 3
ZNF564 WILD-TYPE 70 116 97
'ZNF564 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.991 (Fisher's exact test), Q value = 1

Table S13176.  Gene #1293: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF564 MUTATED 2 0 1 1 1 2 0 0 0
ZNF564 WILD-TYPE 39 26 29 28 38 67 20 14 22
'ZNF564 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.91

Table S13177.  Gene #1293: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF564 MUTATED 1 3 2 4
ZNF564 WILD-TYPE 99 69 70 117
'ZNF564 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S13178.  Gene #1293: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF564 MUTATED 1 1 4 2 2
ZNF564 WILD-TYPE 58 74 70 117 36
'ZNF564 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S13179.  Gene #1293: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF564 MUTATED 1 3 1 2 2
ZNF564 WILD-TYPE 50 73 60 69 93
'ZNF564 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S13180.  Gene #1293: 'ZNF564 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF564 MUTATED 1 2 0 2 2 1 0 1 0
ZNF564 WILD-TYPE 68 46 39 14 51 19 21 37 50
'JMJD1C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 0.16

Table S13181.  Gene #1294: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
JMJD1C MUTATED 4 2 0 1 0
JMJD1C WILD-TYPE 28 16 46 26 23

Figure S3426.  Get High-res Image Gene #1294: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'JMJD1C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.92

Table S13182.  Gene #1294: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
JMJD1C MUTATED 3 2 2
JMJD1C WILD-TYPE 40 65 34
'JMJD1C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00044 (Fisher's exact test), Q value = 0.015

Table S13183.  Gene #1294: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
JMJD1C MUTATED 1 4 19
JMJD1C WILD-TYPE 41 169 128

Figure S3427.  Get High-res Image Gene #1294: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'JMJD1C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S13184.  Gene #1294: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
JMJD1C MUTATED 8 1 8
JMJD1C WILD-TYPE 54 72 67

Figure S3428.  Get High-res Image Gene #1294: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'JMJD1C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.19

Table S13185.  Gene #1294: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
JMJD1C MUTATED 2 5 12
JMJD1C WILD-TYPE 68 115 88

Figure S3429.  Get High-res Image Gene #1294: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'JMJD1C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S13186.  Gene #1294: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
JMJD1C MUTATED 3 1 1 1 0 8 2 2 1
JMJD1C WILD-TYPE 38 25 29 28 39 61 18 12 21
'JMJD1C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0861 (Fisher's exact test), Q value = 0.32

Table S13187.  Gene #1294: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
JMJD1C MUTATED 2 7 7 8
JMJD1C WILD-TYPE 98 65 65 113
'JMJD1C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 0.93

Table S13188.  Gene #1294: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
JMJD1C MUTATED 3 5 8 6 2
JMJD1C WILD-TYPE 56 70 66 113 36
'JMJD1C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.92

Table S13189.  Gene #1294: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
JMJD1C MUTATED 3 7 4 2 7
JMJD1C WILD-TYPE 48 69 57 69 88
'JMJD1C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S13190.  Gene #1294: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
JMJD1C MUTATED 4 4 1 1 4 2 3 2 2
JMJD1C WILD-TYPE 65 44 38 15 49 18 18 36 48
'JMJD1C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S13191.  Gene #1294: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
JMJD1C MUTATED 0 0 2 1 1 0
JMJD1C WILD-TYPE 13 16 12 10 10 9
'JMJD1C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S13192.  Gene #1294: 'JMJD1C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
JMJD1C MUTATED 0 0 0 0 1 2 1 0 0
JMJD1C WILD-TYPE 11 7 7 9 7 5 10 9 5
'CCDC111 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S13193.  Gene #1295: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCDC111 MUTATED 0 2 5
CCDC111 WILD-TYPE 42 171 142
'CCDC111 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S13194.  Gene #1295: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCDC111 MUTATED 2 1 3
CCDC111 WILD-TYPE 60 72 72
'CCDC111 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S13195.  Gene #1295: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCDC111 MUTATED 0 3 2
CCDC111 WILD-TYPE 70 117 98
'CCDC111 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.76

Table S13196.  Gene #1295: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCDC111 MUTATED 0 2 1 0 0 2 0 0 0
CCDC111 WILD-TYPE 41 24 29 29 39 67 20 14 22
'CCDC111 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.63

Table S13197.  Gene #1295: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCDC111 MUTATED 1 3 2 1
CCDC111 WILD-TYPE 99 69 70 120
'CCDC111 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S13198.  Gene #1295: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCDC111 MUTATED 2 2 2 1 0
CCDC111 WILD-TYPE 57 73 72 118 38
'CCDC111 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S13199.  Gene #1295: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCDC111 MUTATED 2 1 1 1 2
CCDC111 WILD-TYPE 49 75 60 70 93
'CCDC111 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00343 (Fisher's exact test), Q value = 0.052

Table S13200.  Gene #1295: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCDC111 MUTATED 0 2 0 1 0 3 0 0 1
CCDC111 WILD-TYPE 69 46 39 15 53 17 21 38 49

Figure S3430.  Get High-res Image Gene #1295: 'CCDC111 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PAK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S13201.  Gene #1296: 'PAK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PAK2 MUTATED 0 3 7
PAK2 WILD-TYPE 42 170 140
'PAK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S13202.  Gene #1296: 'PAK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PAK2 MUTATED 3 1 5
PAK2 WILD-TYPE 59 72 70
'PAK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S13203.  Gene #1296: 'PAK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PAK2 MUTATED 1 3 5
PAK2 WILD-TYPE 69 117 95
'PAK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.92

Table S13204.  Gene #1296: 'PAK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PAK2 MUTATED 1 0 0 1 1 4 2 0 0
PAK2 WILD-TYPE 40 26 30 28 38 65 18 14 22
'PAK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S13205.  Gene #1296: 'PAK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PAK2 MUTATED 2 4 2 2
PAK2 WILD-TYPE 98 68 70 119
'PAK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.46

Table S13206.  Gene #1296: 'PAK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PAK2 MUTATED 1 2 5 1 1
PAK2 WILD-TYPE 58 73 69 118 37
'PAK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 0.17

Table S13207.  Gene #1296: 'PAK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PAK2 MUTATED 2 6 1 0 1
PAK2 WILD-TYPE 49 70 60 71 94

Figure S3431.  Get High-res Image Gene #1296: 'PAK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PAK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S13208.  Gene #1296: 'PAK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PAK2 MUTATED 2 1 0 2 3 1 0 1 0
PAK2 WILD-TYPE 67 47 39 14 50 19 21 37 50
'SGOL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0701 (Fisher's exact test), Q value = 0.29

Table S13209.  Gene #1297: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SGOL2 MUTATED 0 3 9
SGOL2 WILD-TYPE 42 170 138
'SGOL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S13210.  Gene #1297: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SGOL2 MUTATED 4 3 3
SGOL2 WILD-TYPE 58 70 72
'SGOL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S13211.  Gene #1297: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SGOL2 MUTATED 1 3 7
SGOL2 WILD-TYPE 69 117 93
'SGOL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.987 (Fisher's exact test), Q value = 1

Table S13212.  Gene #1297: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SGOL2 MUTATED 2 0 1 1 1 4 1 0 1
SGOL2 WILD-TYPE 39 26 29 28 38 65 19 14 21
'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 0.28

Table S13213.  Gene #1297: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SGOL2 MUTATED 1 4 5 2
SGOL2 WILD-TYPE 99 68 67 119
'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S13214.  Gene #1297: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SGOL2 MUTATED 3 2 5 1 1
SGOL2 WILD-TYPE 56 73 69 118 37
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.56

Table S13215.  Gene #1297: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SGOL2 MUTATED 2 5 2 0 3
SGOL2 WILD-TYPE 49 71 59 71 92
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.54

Table S13216.  Gene #1297: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SGOL2 MUTATED 1 4 0 1 2 2 0 1 1
SGOL2 WILD-TYPE 68 44 39 15 51 18 21 37 49
'HECW2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S13217.  Gene #1298: 'HECW2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HECW2 MUTATED 4 0 0 3 1
HECW2 WILD-TYPE 28 18 46 24 22

Figure S3432.  Get High-res Image Gene #1298: 'HECW2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HECW2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S13218.  Gene #1298: 'HECW2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HECW2 MUTATED 6 1 1
HECW2 WILD-TYPE 37 66 35

Figure S3433.  Get High-res Image Gene #1298: 'HECW2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HECW2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00318 (Fisher's exact test), Q value = 0.049

Table S13219.  Gene #1298: 'HECW2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HECW2 MUTATED 1 7 20
HECW2 WILD-TYPE 41 166 127

Figure S3434.  Get High-res Image Gene #1298: 'HECW2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HECW2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.91

Table S13220.  Gene #1298: 'HECW2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HECW2 MUTATED 7 7 5
HECW2 WILD-TYPE 55 66 70
'HECW2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 0.24

Table S13221.  Gene #1298: 'HECW2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HECW2 MUTATED 3 7 14
HECW2 WILD-TYPE 67 113 86
'HECW2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S13222.  Gene #1298: 'HECW2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HECW2 MUTATED 4 4 2 1 1 11 0 0 1
HECW2 WILD-TYPE 37 22 28 28 38 58 20 14 21
'HECW2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.77

Table S13223.  Gene #1298: 'HECW2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HECW2 MUTATED 6 5 9 8
HECW2 WILD-TYPE 94 67 63 113
'HECW2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S13224.  Gene #1298: 'HECW2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HECW2 MUTATED 4 7 8 4 5
HECW2 WILD-TYPE 55 68 66 115 33
'HECW2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0901 (Fisher's exact test), Q value = 0.33

Table S13225.  Gene #1298: 'HECW2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HECW2 MUTATED 3 9 4 1 10
HECW2 WILD-TYPE 48 67 57 70 85
'HECW2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.056 (Fisher's exact test), Q value = 0.25

Table S13226.  Gene #1298: 'HECW2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HECW2 MUTATED 2 9 3 2 1 2 1 4 3
HECW2 WILD-TYPE 67 39 36 14 52 18 20 34 47
'HECW2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S13227.  Gene #1298: 'HECW2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HECW2 MUTATED 0 2 1 2 3 0
HECW2 WILD-TYPE 13 14 13 9 8 9
'HECW2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S13228.  Gene #1298: 'HECW2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HECW2 MUTATED 1 0 1 1 0 1 3 1 0
HECW2 WILD-TYPE 10 7 6 8 8 6 8 8 5
'BTNL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0075 (Fisher's exact test), Q value = 0.081

Table S13229.  Gene #1299: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BTNL3 MUTATED 0 0 7
BTNL3 WILD-TYPE 42 173 140

Figure S3435.  Get High-res Image Gene #1299: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BTNL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S13230.  Gene #1299: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BTNL3 MUTATED 3 0 4
BTNL3 WILD-TYPE 59 73 71
'BTNL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S13231.  Gene #1299: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BTNL3 MUTATED 0 2 5
BTNL3 WILD-TYPE 70 118 95
'BTNL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S13232.  Gene #1299: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BTNL3 MUTATED 1 0 0 2 0 4 0 0 0
BTNL3 WILD-TYPE 40 26 30 27 39 65 20 14 22
'BTNL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00116 (Fisher's exact test), Q value = 0.027

Table S13233.  Gene #1299: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BTNL3 MUTATED 0 5 2 0
BTNL3 WILD-TYPE 100 67 70 121

Figure S3436.  Get High-res Image Gene #1299: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BTNL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00092 (Fisher's exact test), Q value = 0.024

Table S13234.  Gene #1299: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BTNL3 MUTATED 1 0 6 0 0
BTNL3 WILD-TYPE 58 75 68 119 38

Figure S3437.  Get High-res Image Gene #1299: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BTNL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00147 (Fisher's exact test), Q value = 0.032

Table S13235.  Gene #1299: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BTNL3 MUTATED 0 6 1 0 0
BTNL3 WILD-TYPE 51 70 60 71 95

Figure S3438.  Get High-res Image Gene #1299: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BTNL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0545 (Fisher's exact test), Q value = 0.25

Table S13236.  Gene #1299: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BTNL3 MUTATED 3 2 0 2 0 0 0 0 0
BTNL3 WILD-TYPE 66 46 39 14 53 20 21 38 50
'ATF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S13237.  Gene #1300: 'ATF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATF2 MUTATED 1 3 1
ATF2 WILD-TYPE 41 170 146
'ATF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13238.  Gene #1300: 'ATF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATF2 MUTATED 1 2 2
ATF2 WILD-TYPE 61 71 73
'ATF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13239.  Gene #1300: 'ATF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATF2 MUTATED 1 3 2
ATF2 WILD-TYPE 69 117 98
'ATF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S13240.  Gene #1300: 'ATF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATF2 MUTATED 0 0 0 0 0 2 1 1 2
ATF2 WILD-TYPE 41 26 30 29 39 67 19 13 20
'ATF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S13241.  Gene #1300: 'ATF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATF2 MUTATED 3 1 2 0
ATF2 WILD-TYPE 97 71 70 121
'ATF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.18

Table S13242.  Gene #1300: 'ATF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATF2 MUTATED 0 4 2 0 0
ATF2 WILD-TYPE 59 71 72 119 38

Figure S3439.  Get High-res Image Gene #1300: 'ATF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S13243.  Gene #1300: 'ATF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATF2 MUTATED 2 1 2 0 1
ATF2 WILD-TYPE 49 75 59 71 94
'ATF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S13244.  Gene #1300: 'ATF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATF2 MUTATED 0 2 1 0 2 1 0 0 0
ATF2 WILD-TYPE 69 46 38 16 51 19 21 38 50
'STK38L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.098 (Fisher's exact test), Q value = 0.34

Table S13245.  Gene #1301: 'STK38L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STK38L MUTATED 2 1 4
STK38L WILD-TYPE 40 172 143
'STK38L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.49

Table S13246.  Gene #1301: 'STK38L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STK38L MUTATED 3 0 2
STK38L WILD-TYPE 59 73 73
'STK38L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S13247.  Gene #1301: 'STK38L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STK38L MUTATED 3 1 2
STK38L WILD-TYPE 67 119 98
'STK38L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S13248.  Gene #1301: 'STK38L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STK38L MUTATED 0 0 1 0 1 2 0 2 0
STK38L WILD-TYPE 41 26 29 29 38 67 20 12 22
'STK38L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S13249.  Gene #1301: 'STK38L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STK38L MUTATED 1 3 1 2
STK38L WILD-TYPE 99 69 71 119
'STK38L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S13250.  Gene #1301: 'STK38L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STK38L MUTATED 1 2 2 1 1
STK38L WILD-TYPE 58 73 72 118 37
'STK38L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S13251.  Gene #1301: 'STK38L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STK38L MUTATED 0 4 1 0 1
STK38L WILD-TYPE 51 72 60 71 94
'STK38L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S13252.  Gene #1301: 'STK38L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STK38L MUTATED 3 0 0 0 2 1 0 0 0
STK38L WILD-TYPE 66 48 39 16 51 19 21 38 50
'B4GALT6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0971 (Fisher's exact test), Q value = 0.34

Table S13253.  Gene #1302: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
B4GALT6 MUTATED 3 0 0 1 0
B4GALT6 WILD-TYPE 29 18 46 26 23
'B4GALT6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S13254.  Gene #1302: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
B4GALT6 MUTATED 3 1 0
B4GALT6 WILD-TYPE 40 66 36
'B4GALT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00131 (Fisher's exact test), Q value = 0.03

Table S13255.  Gene #1302: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
B4GALT6 MUTATED 1 0 9
B4GALT6 WILD-TYPE 41 173 138

Figure S3440.  Get High-res Image Gene #1302: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'B4GALT6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.2

Table S13256.  Gene #1302: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
B4GALT6 MUTATED 4 0 1
B4GALT6 WILD-TYPE 58 73 74

Figure S3441.  Get High-res Image Gene #1302: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'B4GALT6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S13257.  Gene #1302: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
B4GALT6 MUTATED 2 4 2
B4GALT6 WILD-TYPE 68 116 98
'B4GALT6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S13258.  Gene #1302: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
B4GALT6 MUTATED 3 0 2 1 0 1 1 0 0
B4GALT6 WILD-TYPE 38 26 28 28 39 68 19 14 22
'B4GALT6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S13259.  Gene #1302: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
B4GALT6 MUTATED 0 2 3 5
B4GALT6 WILD-TYPE 100 70 69 116
'B4GALT6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00736 (Fisher's exact test), Q value = 0.08

Table S13260.  Gene #1302: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
B4GALT6 MUTATED 0 1 4 1 4
B4GALT6 WILD-TYPE 59 74 70 118 34

Figure S3442.  Get High-res Image Gene #1302: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'B4GALT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.046 (Fisher's exact test), Q value = 0.23

Table S13261.  Gene #1302: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
B4GALT6 MUTATED 0 1 3 0 6
B4GALT6 WILD-TYPE 51 75 58 71 89

Figure S3443.  Get High-res Image Gene #1302: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'B4GALT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00885 (Fisher's exact test), Q value = 0.088

Table S13262.  Gene #1302: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
B4GALT6 MUTATED 0 4 0 0 0 1 0 4 1
B4GALT6 WILD-TYPE 69 44 39 16 53 19 21 34 49

Figure S3444.  Get High-res Image Gene #1302: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MFSD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.91

Table S13263.  Gene #1303: 'MFSD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MFSD4 MUTATED 1 2 3
MFSD4 WILD-TYPE 41 171 144
'MFSD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S13264.  Gene #1303: 'MFSD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MFSD4 MUTATED 2 0 2
MFSD4 WILD-TYPE 60 73 73
'MFSD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13265.  Gene #1303: 'MFSD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MFSD4 MUTATED 1 3 2
MFSD4 WILD-TYPE 69 117 98
'MFSD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S13266.  Gene #1303: 'MFSD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MFSD4 MUTATED 1 1 1 0 0 1 1 1 0
MFSD4 WILD-TYPE 40 25 29 29 39 68 19 13 22
'MFSD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S13267.  Gene #1303: 'MFSD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MFSD4 MUTATED 1 2 1 2
MFSD4 WILD-TYPE 99 70 71 119
'MFSD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S13268.  Gene #1303: 'MFSD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MFSD4 MUTATED 1 2 1 2 0
MFSD4 WILD-TYPE 58 73 73 117 38
'MFSD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S13269.  Gene #1303: 'MFSD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MFSD4 MUTATED 0 1 2 1 2
MFSD4 WILD-TYPE 51 75 59 70 93
'MFSD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0659 (Fisher's exact test), Q value = 0.28

Table S13270.  Gene #1303: 'MFSD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MFSD4 MUTATED 0 1 3 1 0 0 0 0 1
MFSD4 WILD-TYPE 69 47 36 15 53 20 21 38 49
'LRRC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.55

Table S13271.  Gene #1304: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LRRC6 MUTATED 1 2 0
LRRC6 WILD-TYPE 41 171 147
'LRRC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S13272.  Gene #1304: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LRRC6 MUTATED 2 1 0
LRRC6 WILD-TYPE 60 72 75
'LRRC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S13273.  Gene #1304: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LRRC6 MUTATED 0 1 2
LRRC6 WILD-TYPE 70 119 98
'LRRC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S13274.  Gene #1304: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LRRC6 MUTATED 1 0 0 0 0 2 0 0 0
LRRC6 WILD-TYPE 40 26 30 29 39 67 20 14 22
'LRRC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S13275.  Gene #1304: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LRRC6 MUTATED 1 0 2 0
LRRC6 WILD-TYPE 99 72 70 121
'LRRC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S13276.  Gene #1304: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LRRC6 MUTATED 1 1 1 0 0
LRRC6 WILD-TYPE 58 74 73 119 38
'LRRC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0618 (Fisher's exact test), Q value = 0.27

Table S13277.  Gene #1304: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LRRC6 MUTATED 1 0 2 0 0
LRRC6 WILD-TYPE 50 76 59 71 95
'LRRC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S13278.  Gene #1304: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LRRC6 MUTATED 0 1 0 0 1 1 0 0 0
LRRC6 WILD-TYPE 69 47 39 16 52 19 21 38 50
'LRRC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S13279.  Gene #1304: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LRRC6 MUTATED 1 1 0 1 0 0
LRRC6 WILD-TYPE 12 15 14 10 11 9
'LRRC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S13280.  Gene #1304: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LRRC6 MUTATED 0 0 0 0 0 2 0 0 1
LRRC6 WILD-TYPE 11 7 7 9 8 5 11 9 4

Figure S3445.  Get High-res Image Gene #1304: 'LRRC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MPP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S13281.  Gene #1305: 'MPP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MPP7 MUTATED 1 3 1
MPP7 WILD-TYPE 41 170 146
'MPP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S13282.  Gene #1305: 'MPP7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MPP7 MUTATED 1 2 1
MPP7 WILD-TYPE 61 71 74
'MPP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S13283.  Gene #1305: 'MPP7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MPP7 MUTATED 1 4 0
MPP7 WILD-TYPE 69 116 100
'MPP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S13284.  Gene #1305: 'MPP7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MPP7 MUTATED 0 0 2 0 1 1 1 0 0
MPP7 WILD-TYPE 41 26 28 29 38 68 19 14 22
'MPP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.62

Table S13285.  Gene #1305: 'MPP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MPP7 MUTATED 2 2 1 0
MPP7 WILD-TYPE 98 70 71 121
'MPP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0621 (Fisher's exact test), Q value = 0.27

Table S13286.  Gene #1305: 'MPP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MPP7 MUTATED 1 3 0 0 1
MPP7 WILD-TYPE 58 72 74 119 37
'MPP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S13287.  Gene #1305: 'MPP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MPP7 MUTATED 0 1 1 2 1
MPP7 WILD-TYPE 51 75 60 69 94
'MPP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S13288.  Gene #1305: 'MPP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MPP7 MUTATED 2 0 0 0 2 0 0 1 0
MPP7 WILD-TYPE 67 48 39 16 51 20 21 37 50
'IKBKE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S13289.  Gene #1306: 'IKBKE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IKBKE MUTATED 1 2 4
IKBKE WILD-TYPE 41 171 143
'IKBKE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S13290.  Gene #1306: 'IKBKE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IKBKE MUTATED 0 1 4
IKBKE WILD-TYPE 62 72 71
'IKBKE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S13291.  Gene #1306: 'IKBKE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IKBKE MUTATED 1 4 1
IKBKE WILD-TYPE 69 116 99
'IKBKE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.65

Table S13292.  Gene #1306: 'IKBKE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IKBKE MUTATED 1 0 2 1 1 0 1 0 0
IKBKE WILD-TYPE 40 26 28 28 38 69 19 14 22
'IKBKE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S13293.  Gene #1306: 'IKBKE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IKBKE MUTATED 1 3 1 2
IKBKE WILD-TYPE 99 69 71 119
'IKBKE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S13294.  Gene #1306: 'IKBKE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IKBKE MUTATED 1 1 3 1 1
IKBKE WILD-TYPE 58 74 71 118 37
'IKBKE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S13295.  Gene #1306: 'IKBKE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IKBKE MUTATED 0 2 1 2 2
IKBKE WILD-TYPE 51 74 60 69 93
'IKBKE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S13296.  Gene #1306: 'IKBKE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IKBKE MUTATED 1 1 0 1 2 0 0 2 0
IKBKE WILD-TYPE 68 47 39 15 51 20 21 36 50
'IKBKE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S13297.  Gene #1306: 'IKBKE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IKBKE MUTATED 1 0 0 1 1 0
IKBKE WILD-TYPE 12 16 14 10 10 9
'IKBKE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.92

Table S13298.  Gene #1306: 'IKBKE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IKBKE MUTATED 0 0 1 1 0 0 0 1 0
IKBKE WILD-TYPE 11 7 6 8 8 7 11 8 5
'MRPS22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S13299.  Gene #1307: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MRPS22 MUTATED 0 3 7
MRPS22 WILD-TYPE 42 170 140
'MRPS22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13300.  Gene #1307: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MRPS22 MUTATED 2 3 3
MRPS22 WILD-TYPE 60 70 72
'MRPS22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S13301.  Gene #1307: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MRPS22 MUTATED 0 4 5
MRPS22 WILD-TYPE 70 116 95
'MRPS22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0708 (Fisher's exact test), Q value = 0.29

Table S13302.  Gene #1307: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MRPS22 MUTATED 0 0 3 0 0 4 2 0 0
MRPS22 WILD-TYPE 41 26 27 29 39 65 18 14 22
'MRPS22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S13303.  Gene #1307: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MRPS22 MUTATED 3 4 1 2
MRPS22 WILD-TYPE 97 68 71 119
'MRPS22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.63

Table S13304.  Gene #1307: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MRPS22 MUTATED 1 3 4 1 1
MRPS22 WILD-TYPE 58 72 70 118 37
'MRPS22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.76

Table S13305.  Gene #1307: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MRPS22 MUTATED 1 5 1 1 2
MRPS22 WILD-TYPE 50 71 60 70 93
'MRPS22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0454 (Fisher's exact test), Q value = 0.23

Table S13306.  Gene #1307: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MRPS22 MUTATED 3 1 0 3 1 1 0 1 0
MRPS22 WILD-TYPE 66 47 39 13 52 19 21 37 50

Figure S3446.  Get High-res Image Gene #1307: 'MRPS22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HEATR4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S13307.  Gene #1308: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HEATR4 MUTATED 2 0 0 0 1
HEATR4 WILD-TYPE 30 18 46 27 22
'HEATR4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S13308.  Gene #1308: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HEATR4 MUTATED 2 0 1
HEATR4 WILD-TYPE 41 67 35
'HEATR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00303 (Fisher's exact test), Q value = 0.048

Table S13309.  Gene #1308: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HEATR4 MUTATED 0 2 12
HEATR4 WILD-TYPE 42 171 135

Figure S3447.  Get High-res Image Gene #1308: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HEATR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.12

Table S13310.  Gene #1308: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HEATR4 MUTATED 6 0 4
HEATR4 WILD-TYPE 56 73 71

Figure S3448.  Get High-res Image Gene #1308: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HEATR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.17

Table S13311.  Gene #1308: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HEATR4 MUTATED 2 2 9
HEATR4 WILD-TYPE 68 118 91

Figure S3449.  Get High-res Image Gene #1308: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'HEATR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S13312.  Gene #1308: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HEATR4 MUTATED 1 1 1 1 1 4 2 1 1
HEATR4 WILD-TYPE 40 25 29 28 38 65 18 13 21
'HEATR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S13313.  Gene #1308: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HEATR4 MUTATED 1 5 4 4
HEATR4 WILD-TYPE 99 67 68 117
'HEATR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.034 (Fisher's exact test), Q value = 0.19

Table S13314.  Gene #1308: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HEATR4 MUTATED 1 1 8 3 1
HEATR4 WILD-TYPE 58 74 66 116 37

Figure S3450.  Get High-res Image Gene #1308: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HEATR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.78

Table S13315.  Gene #1308: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HEATR4 MUTATED 0 5 2 3 3
HEATR4 WILD-TYPE 51 71 59 68 92
'HEATR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.63

Table S13316.  Gene #1308: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HEATR4 MUTATED 1 2 2 2 2 1 1 2 0
HEATR4 WILD-TYPE 68 46 37 14 51 19 20 36 50
'HEATR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S13317.  Gene #1308: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HEATR4 MUTATED 0 0 2 0 1 1
HEATR4 WILD-TYPE 13 16 12 11 10 8
'HEATR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S13318.  Gene #1308: 'HEATR4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HEATR4 MUTATED 0 0 0 0 2 0 1 1 0
HEATR4 WILD-TYPE 11 7 7 9 6 7 10 8 5
'PSMD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 0.26

Table S13319.  Gene #1309: 'PSMD11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PSMD11 MUTATED 2 1 5
PSMD11 WILD-TYPE 40 172 142
'PSMD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13320.  Gene #1309: 'PSMD11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PSMD11 MUTATED 1 2 2
PSMD11 WILD-TYPE 61 71 73
'PSMD11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S13321.  Gene #1309: 'PSMD11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PSMD11 MUTATED 1 5 2
PSMD11 WILD-TYPE 69 115 98
'PSMD11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0556 (Fisher's exact test), Q value = 0.25

Table S13322.  Gene #1309: 'PSMD11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PSMD11 MUTATED 1 0 3 0 0 1 2 1 0
PSMD11 WILD-TYPE 40 26 27 29 39 68 18 13 22
'PSMD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13323.  Gene #1309: 'PSMD11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PSMD11 MUTATED 2 1 2 3
PSMD11 WILD-TYPE 98 71 70 118
'PSMD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S13324.  Gene #1309: 'PSMD11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PSMD11 MUTATED 0 3 2 1 2
PSMD11 WILD-TYPE 59 72 72 118 36
'PSMD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.96

Table S13325.  Gene #1309: 'PSMD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PSMD11 MUTATED 2 2 0 1 2
PSMD11 WILD-TYPE 49 74 61 70 93
'PSMD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S13326.  Gene #1309: 'PSMD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PSMD11 MUTATED 1 2 1 0 0 2 0 1 0
PSMD11 WILD-TYPE 68 46 38 16 53 18 21 37 50
'KRTAP12-3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S13327.  Gene #1310: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KRTAP12-3 MUTATED 0 0 3
KRTAP12-3 WILD-TYPE 42 173 144
'KRTAP12-3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S13328.  Gene #1310: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KRTAP12-3 MUTATED 0 0 3
KRTAP12-3 WILD-TYPE 62 73 72
'KRTAP12-3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S13329.  Gene #1310: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KRTAP12-3 MUTATED 0 2 1
KRTAP12-3 WILD-TYPE 70 118 99
'KRTAP12-3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S13330.  Gene #1310: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KRTAP12-3 MUTATED 0 0 0 1 0 1 1 0 0
KRTAP12-3 WILD-TYPE 41 26 30 28 39 68 19 14 22
'KRTAP12-3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S13331.  Gene #1310: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KRTAP12-3 MUTATED 0 3 0 0
KRTAP12-3 WILD-TYPE 100 69 72 121

Figure S3451.  Get High-res Image Gene #1310: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KRTAP12-3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0314 (Fisher's exact test), Q value = 0.19

Table S13332.  Gene #1310: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KRTAP12-3 MUTATED 0 0 3 0 0
KRTAP12-3 WILD-TYPE 59 75 71 119 38

Figure S3452.  Get High-res Image Gene #1310: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KRTAP12-3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S13333.  Gene #1310: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KRTAP12-3 MUTATED 1 2 0 0 0
KRTAP12-3 WILD-TYPE 50 74 61 71 95
'KRTAP12-3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 0.98

Table S13334.  Gene #1310: 'KRTAP12-3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KRTAP12-3 MUTATED 1 0 0 0 2 0 0 0 0
KRTAP12-3 WILD-TYPE 68 48 39 16 51 20 21 38 50
'FLNB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00572 (Fisher's exact test), Q value = 0.071

Table S13335.  Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FLNB MUTATED 5 0 0 3 0
FLNB WILD-TYPE 27 18 46 24 23

Figure S3453.  Get High-res Image Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FLNB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00155 (Fisher's exact test), Q value = 0.033

Table S13336.  Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FLNB MUTATED 7 1 0
FLNB WILD-TYPE 36 66 36

Figure S3454.  Get High-res Image Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S13337.  Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FLNB MUTATED 0 3 25
FLNB WILD-TYPE 42 170 122

Figure S3455.  Get High-res Image Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FLNB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0065

Table S13338.  Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FLNB MUTATED 4 0 13
FLNB WILD-TYPE 58 73 62

Figure S3456.  Get High-res Image Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FLNB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.93

Table S13339.  Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FLNB MUTATED 5 9 11
FLNB WILD-TYPE 65 111 89
'FLNB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S13340.  Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FLNB MUTATED 3 4 3 1 3 9 2 0 0
FLNB WILD-TYPE 38 22 27 28 36 60 18 14 22
'FLNB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00238 (Fisher's exact test), Q value = 0.041

Table S13341.  Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FLNB MUTATED 1 11 5 11
FLNB WILD-TYPE 99 61 67 110

Figure S3457.  Get High-res Image Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FLNB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0081

Table S13342.  Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FLNB MUTATED 2 2 12 4 8
FLNB WILD-TYPE 57 73 62 115 30

Figure S3458.  Get High-res Image Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0019 (Fisher's exact test), Q value = 0.037

Table S13343.  Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FLNB MUTATED 0 12 2 2 9
FLNB WILD-TYPE 51 64 59 69 86

Figure S3459.  Get High-res Image Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FLNB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00197 (Fisher's exact test), Q value = 0.038

Table S13344.  Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FLNB MUTATED 5 3 0 5 2 1 1 7 1
FLNB WILD-TYPE 64 45 39 11 51 19 20 31 49

Figure S3460.  Get High-res Image Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00325 (Fisher's exact test), Q value = 0.05

Table S13345.  Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FLNB MUTATED 0 0 1 0 4 0
FLNB WILD-TYPE 13 16 13 11 7 9

Figure S3461.  Get High-res Image Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S13346.  Gene #1311: 'FLNB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FLNB MUTATED 0 0 0 2 1 1 1 0 0
FLNB WILD-TYPE 11 7 7 7 7 6 10 9 5
'PALLD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S13347.  Gene #1312: 'PALLD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PALLD MUTATED 1 2 6
PALLD WILD-TYPE 41 171 141
'PALLD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13348.  Gene #1312: 'PALLD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PALLD MUTATED 2 2 3
PALLD WILD-TYPE 60 71 72
'PALLD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.15

Table S13349.  Gene #1312: 'PALLD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PALLD MUTATED 1 0 5
PALLD WILD-TYPE 69 120 95

Figure S3462.  Get High-res Image Gene #1312: 'PALLD MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PALLD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.5

Table S13350.  Gene #1312: 'PALLD MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PALLD MUTATED 0 0 0 0 0 5 0 0 1
PALLD WILD-TYPE 41 26 30 29 39 64 20 14 21
'PALLD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S13351.  Gene #1312: 'PALLD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PALLD MUTATED 3 3 2 1
PALLD WILD-TYPE 97 69 70 120
'PALLD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S13352.  Gene #1312: 'PALLD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PALLD MUTATED 1 2 4 1 1
PALLD WILD-TYPE 58 73 70 118 37
'PALLD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S13353.  Gene #1312: 'PALLD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PALLD MUTATED 1 5 1 0 2
PALLD WILD-TYPE 50 71 60 71 93
'PALLD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S13354.  Gene #1312: 'PALLD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PALLD MUTATED 0 2 1 2 1 1 0 1 1
PALLD WILD-TYPE 69 46 38 14 52 19 21 37 49
'GATA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00871 (Fisher's exact test), Q value = 0.088

Table S13355.  Gene #1313: 'GATA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GATA1 MUTATED 4 0 0 0 0
GATA1 WILD-TYPE 28 18 46 27 23

Figure S3463.  Get High-res Image Gene #1313: 'GATA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GATA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0517 (Fisher's exact test), Q value = 0.24

Table S13356.  Gene #1313: 'GATA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GATA1 MUTATED 3 0 1
GATA1 WILD-TYPE 40 67 35
'GATA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0568 (Fisher's exact test), Q value = 0.25

Table S13357.  Gene #1313: 'GATA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GATA1 MUTATED 0 5 11
GATA1 WILD-TYPE 42 168 136
'GATA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.94

Table S13358.  Gene #1313: 'GATA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GATA1 MUTATED 2 5 4
GATA1 WILD-TYPE 60 68 71
'GATA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S13359.  Gene #1313: 'GATA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GATA1 MUTATED 3 4 4
GATA1 WILD-TYPE 67 116 96
'GATA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S13360.  Gene #1313: 'GATA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GATA1 MUTATED 2 0 2 1 2 3 0 0 1
GATA1 WILD-TYPE 39 26 28 28 37 66 20 14 21
'GATA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S13361.  Gene #1313: 'GATA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GATA1 MUTATED 4 4 3 5
GATA1 WILD-TYPE 96 68 69 116
'GATA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S13362.  Gene #1313: 'GATA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GATA1 MUTATED 2 4 5 1 4
GATA1 WILD-TYPE 57 71 69 118 34

Figure S3464.  Get High-res Image Gene #1313: 'GATA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GATA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S13363.  Gene #1313: 'GATA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GATA1 MUTATED 2 7 1 1 5
GATA1 WILD-TYPE 49 69 60 70 90
'GATA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0548 (Fisher's exact test), Q value = 0.25

Table S13364.  Gene #1313: 'GATA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GATA1 MUTATED 2 2 1 2 2 2 0 5 0
GATA1 WILD-TYPE 67 46 38 14 51 18 21 33 50
'GATA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.75

Table S13365.  Gene #1313: 'GATA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GATA1 MUTATED 0 2 0 1 0 0
GATA1 WILD-TYPE 13 14 14 10 11 9
'GATA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S13366.  Gene #1313: 'GATA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GATA1 MUTATED 1 0 1 0 0 0 1 0 0
GATA1 WILD-TYPE 10 7 6 9 8 7 10 9 5
'TRIP12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00552 (Fisher's exact test), Q value = 0.07

Table S13367.  Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TRIP12 MUTATED 6 1 0 2 0
TRIP12 WILD-TYPE 26 17 46 25 23

Figure S3465.  Get High-res Image Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRIP12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00709 (Fisher's exact test), Q value = 0.079

Table S13368.  Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TRIP12 MUTATED 7 1 1
TRIP12 WILD-TYPE 36 66 35

Figure S3466.  Get High-res Image Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TRIP12 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S13369.  Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRIP12 MUTATED 1 3 23
TRIP12 WILD-TYPE 41 170 124

Figure S3467.  Get High-res Image Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRIP12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00759 (Fisher's exact test), Q value = 0.082

Table S13370.  Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRIP12 MUTATED 6 1 11
TRIP12 WILD-TYPE 56 72 64

Figure S3468.  Get High-res Image Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TRIP12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S13371.  Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRIP12 MUTATED 3 6 11
TRIP12 WILD-TYPE 67 114 89
'TRIP12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S13372.  Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRIP12 MUTATED 1 2 2 1 2 9 2 1 0
TRIP12 WILD-TYPE 40 24 28 28 37 60 18 13 22
'TRIP12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.065 (Fisher's exact test), Q value = 0.28

Table S13373.  Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRIP12 MUTATED 3 10 6 9
TRIP12 WILD-TYPE 97 62 66 112
'TRIP12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S13374.  Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRIP12 MUTATED 1 4 13 2 8
TRIP12 WILD-TYPE 58 71 61 117 30

Figure S3469.  Get High-res Image Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRIP12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S13375.  Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRIP12 MUTATED 2 8 5 3 9
TRIP12 WILD-TYPE 49 68 56 68 86
'TRIP12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.025 (Fisher's exact test), Q value = 0.16

Table S13376.  Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRIP12 MUTATED 5 4 1 5 2 2 2 5 1
TRIP12 WILD-TYPE 64 44 38 11 51 18 19 33 49

Figure S3470.  Get High-res Image Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TRIP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.95

Table S13377.  Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TRIP12 MUTATED 1 1 2 0 2 0
TRIP12 WILD-TYPE 12 15 12 11 9 9
'TRIP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.95

Table S13378.  Gene #1314: 'TRIP12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TRIP12 MUTATED 0 1 0 1 1 1 0 1 1
TRIP12 WILD-TYPE 11 6 7 8 7 6 11 8 4
'ZFP91 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S13379.  Gene #1315: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZFP91 MUTATED 0 3 4
ZFP91 WILD-TYPE 42 170 143
'ZFP91 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13380.  Gene #1315: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZFP91 MUTATED 1 1 2
ZFP91 WILD-TYPE 61 72 73
'ZFP91 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S13381.  Gene #1315: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZFP91 MUTATED 1 2 3
ZFP91 WILD-TYPE 69 118 97
'ZFP91 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0456 (Fisher's exact test), Q value = 0.23

Table S13382.  Gene #1315: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZFP91 MUTATED 1 2 1 0 0 0 2 0 0
ZFP91 WILD-TYPE 40 24 29 29 39 69 18 14 22

Figure S3471.  Get High-res Image Gene #1315: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ZFP91 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S13383.  Gene #1315: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZFP91 MUTATED 2 1 2 2
ZFP91 WILD-TYPE 98 71 70 119
'ZFP91 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S13384.  Gene #1315: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZFP91 MUTATED 1 1 2 2 1
ZFP91 WILD-TYPE 58 74 72 117 37
'ZFP91 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S13385.  Gene #1315: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZFP91 MUTATED 1 2 1 2 1
ZFP91 WILD-TYPE 50 74 60 69 94
'ZFP91 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S13386.  Gene #1315: 'ZFP91 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZFP91 MUTATED 0 2 2 1 0 0 0 1 1
ZFP91 WILD-TYPE 69 46 37 15 53 20 21 37 49
'OR9Q2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S13387.  Gene #1316: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OR9Q2 MUTATED 2 0 0 1 0
OR9Q2 WILD-TYPE 30 18 46 26 23
'OR9Q2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13388.  Gene #1316: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OR9Q2 MUTATED 1 1 1
OR9Q2 WILD-TYPE 42 66 35
'OR9Q2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S13389.  Gene #1316: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR9Q2 MUTATED 0 5 9
OR9Q2 WILD-TYPE 42 168 138
'OR9Q2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S13390.  Gene #1316: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR9Q2 MUTATED 1 4 6
OR9Q2 WILD-TYPE 61 69 69
'OR9Q2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S13391.  Gene #1316: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR9Q2 MUTATED 1 7 4
OR9Q2 WILD-TYPE 69 113 96
'OR9Q2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.994 (Fisher's exact test), Q value = 1

Table S13392.  Gene #1316: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR9Q2 MUTATED 2 2 1 1 1 3 1 0 1
OR9Q2 WILD-TYPE 39 24 29 28 38 66 19 14 21
'OR9Q2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S13393.  Gene #1316: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR9Q2 MUTATED 4 5 1 4
OR9Q2 WILD-TYPE 96 67 71 117
'OR9Q2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S13394.  Gene #1316: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR9Q2 MUTATED 3 2 5 3 1
OR9Q2 WILD-TYPE 56 73 69 116 37
'OR9Q2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S13395.  Gene #1316: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR9Q2 MUTATED 3 5 2 1 3
OR9Q2 WILD-TYPE 48 71 59 70 92
'OR9Q2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S13396.  Gene #1316: 'OR9Q2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR9Q2 MUTATED 2 2 0 1 4 3 0 1 1
OR9Q2 WILD-TYPE 67 46 39 15 49 17 21 37 49
'HIST1H2BC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.27

Table S13397.  Gene #1317: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HIST1H2BC MUTATED 0 0 4
HIST1H2BC WILD-TYPE 42 173 143
'HIST1H2BC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S13398.  Gene #1317: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HIST1H2BC MUTATED 1 0 2
HIST1H2BC WILD-TYPE 61 73 73
'HIST1H2BC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S13399.  Gene #1317: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HIST1H2BC MUTATED 0 3 1
HIST1H2BC WILD-TYPE 70 117 99
'HIST1H2BC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S13400.  Gene #1317: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HIST1H2BC MUTATED 0 1 1 2 0 0 0 0 0
HIST1H2BC WILD-TYPE 41 25 29 27 39 69 20 14 22
'HIST1H2BC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.95

Table S13401.  Gene #1317: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HIST1H2BC MUTATED 0 1 1 2
HIST1H2BC WILD-TYPE 100 71 71 119
'HIST1H2BC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S13402.  Gene #1317: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HIST1H2BC MUTATED 0 0 2 2 0
HIST1H2BC WILD-TYPE 59 75 72 117 38
'HIST1H2BC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S13403.  Gene #1317: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HIST1H2BC MUTATED 0 1 0 1 2
HIST1H2BC WILD-TYPE 51 75 61 70 93
'HIST1H2BC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S13404.  Gene #1317: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HIST1H2BC MUTATED 1 0 0 0 1 1 0 0 1
HIST1H2BC WILD-TYPE 68 48 39 16 52 19 21 38 49
'CLK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.94

Table S13405.  Gene #1318: 'CLK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CLK4 MUTATED 1 3 5
CLK4 WILD-TYPE 41 170 142
'CLK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S13406.  Gene #1318: 'CLK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CLK4 MUTATED 3 1 3
CLK4 WILD-TYPE 59 72 72
'CLK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S13407.  Gene #1318: 'CLK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CLK4 MUTATED 1 5 2
CLK4 WILD-TYPE 69 115 98
'CLK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S13408.  Gene #1318: 'CLK4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CLK4 MUTATED 0 0 1 0 0 3 1 2 1
CLK4 WILD-TYPE 41 26 29 29 39 66 19 12 21
'CLK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.98

Table S13409.  Gene #1318: 'CLK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CLK4 MUTATED 4 1 2 2
CLK4 WILD-TYPE 96 71 70 119
'CLK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0809 (Fisher's exact test), Q value = 0.31

Table S13410.  Gene #1318: 'CLK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CLK4 MUTATED 2 2 3 0 2
CLK4 WILD-TYPE 57 73 71 119 36
'CLK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S13411.  Gene #1318: 'CLK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CLK4 MUTATED 0 3 2 2 2
CLK4 WILD-TYPE 51 73 59 69 93
'CLK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.78

Table S13412.  Gene #1318: 'CLK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CLK4 MUTATED 3 2 1 1 0 1 0 1 0
CLK4 WILD-TYPE 66 46 38 15 53 19 21 37 50
'CLK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.99

Table S13413.  Gene #1318: 'CLK4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CLK4 MUTATED 2 1 0 1 1 0
CLK4 WILD-TYPE 11 15 14 10 10 9
'CLK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.85

Table S13414.  Gene #1318: 'CLK4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CLK4 MUTATED 1 0 0 0 0 0 2 2 0
CLK4 WILD-TYPE 10 7 7 9 8 7 9 7 5
'LPGAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13415.  Gene #1319: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LPGAT1 MUTATED 0 2 1
LPGAT1 WILD-TYPE 42 171 146
'LPGAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S13416.  Gene #1319: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LPGAT1 MUTATED 1 2 0
LPGAT1 WILD-TYPE 61 71 75
'LPGAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S13417.  Gene #1319: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LPGAT1 MUTATED 0 1 2
LPGAT1 WILD-TYPE 70 119 98
'LPGAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.94

Table S13418.  Gene #1319: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LPGAT1 MUTATED 0 0 0 0 0 2 0 0 1
LPGAT1 WILD-TYPE 41 26 30 29 39 67 20 14 21
'LPGAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.67

Table S13419.  Gene #1319: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LPGAT1 MUTATED 2 0 1 0
LPGAT1 WILD-TYPE 98 72 71 121
'LPGAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S13420.  Gene #1319: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LPGAT1 MUTATED 1 1 1 0 0
LPGAT1 WILD-TYPE 58 74 73 119 38
'LPGAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S13421.  Gene #1319: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LPGAT1 MUTATED 1 2 0 0 0
LPGAT1 WILD-TYPE 50 74 61 71 95
'LPGAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S13422.  Gene #1319: 'LPGAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LPGAT1 MUTATED 1 0 2 0 0 0 0 0 0
LPGAT1 WILD-TYPE 68 48 37 16 53 20 21 38 50
'C1ORF85 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0804 (Fisher's exact test), Q value = 0.31

Table S13423.  Gene #1320: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C1ORF85 MUTATED 0 1 6
C1ORF85 WILD-TYPE 42 172 141
'C1ORF85 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.84

Table S13424.  Gene #1320: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C1ORF85 MUTATED 3 1 3
C1ORF85 WILD-TYPE 59 72 72
'C1ORF85 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.42

Table S13425.  Gene #1320: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C1ORF85 MUTATED 1 1 5
C1ORF85 WILD-TYPE 69 119 95
'C1ORF85 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.82

Table S13426.  Gene #1320: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C1ORF85 MUTATED 3 1 0 0 0 3 0 0 0
C1ORF85 WILD-TYPE 38 25 30 29 39 66 20 14 22
'C1ORF85 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S13427.  Gene #1320: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C1ORF85 MUTATED 1 2 4 0
C1ORF85 WILD-TYPE 99 70 68 121

Figure S3472.  Get High-res Image Gene #1320: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C1ORF85 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S13428.  Gene #1320: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C1ORF85 MUTATED 2 2 3 0 0
C1ORF85 WILD-TYPE 57 73 71 119 38
'C1ORF85 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S13429.  Gene #1320: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C1ORF85 MUTATED 1 3 1 1 1
C1ORF85 WILD-TYPE 50 73 60 70 94
'C1ORF85 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S13430.  Gene #1320: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C1ORF85 MUTATED 2 2 1 1 0 0 0 0 1
C1ORF85 WILD-TYPE 67 46 38 15 53 20 21 38 49
'C1ORF85 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S13431.  Gene #1320: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C1ORF85 MUTATED 1 1 1 0 0 1
C1ORF85 WILD-TYPE 12 15 13 11 11 8
'C1ORF85 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S13432.  Gene #1320: 'C1ORF85 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C1ORF85 MUTATED 1 0 0 0 0 0 2 1 0
C1ORF85 WILD-TYPE 10 7 7 9 8 7 9 8 5
'UGT2A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S13433.  Gene #1321: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
UGT2A1 MUTATED 2 1 0 2 0
UGT2A1 WILD-TYPE 30 17 46 25 23
'UGT2A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S13434.  Gene #1321: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
UGT2A1 MUTATED 3 2 0
UGT2A1 WILD-TYPE 40 65 36
'UGT2A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.013

Table S13435.  Gene #1321: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UGT2A1 MUTATED 0 0 10
UGT2A1 WILD-TYPE 42 173 137

Figure S3473.  Get High-res Image Gene #1321: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UGT2A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S13436.  Gene #1321: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UGT2A1 MUTATED 1 0 2
UGT2A1 WILD-TYPE 61 73 73
'UGT2A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S13437.  Gene #1321: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UGT2A1 MUTATED 2 4 1
UGT2A1 WILD-TYPE 68 116 99
'UGT2A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0369 (Fisher's exact test), Q value = 0.2

Table S13438.  Gene #1321: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UGT2A1 MUTATED 1 0 3 0 1 0 2 0 0
UGT2A1 WILD-TYPE 40 26 27 29 38 69 18 14 22

Figure S3474.  Get High-res Image Gene #1321: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'UGT2A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0514 (Fisher's exact test), Q value = 0.24

Table S13439.  Gene #1321: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UGT2A1 MUTATED 0 1 2 7
UGT2A1 WILD-TYPE 100 71 70 114
'UGT2A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S13440.  Gene #1321: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UGT2A1 MUTATED 1 1 1 2 5
UGT2A1 WILD-TYPE 58 74 73 117 33

Figure S3475.  Get High-res Image Gene #1321: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UGT2A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.96

Table S13441.  Gene #1321: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UGT2A1 MUTATED 1 1 1 2 5
UGT2A1 WILD-TYPE 50 75 60 69 90
'UGT2A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00131 (Fisher's exact test), Q value = 0.03

Table S13442.  Gene #1321: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UGT2A1 MUTATED 0 1 0 1 0 2 0 5 1
UGT2A1 WILD-TYPE 69 47 39 15 53 18 21 33 49

Figure S3476.  Get High-res Image Gene #1321: 'UGT2A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TMEM229B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S13443.  Gene #1322: 'TMEM229B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMEM229B MUTATED 0 1 3
TMEM229B WILD-TYPE 42 172 144
'TMEM229B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13444.  Gene #1322: 'TMEM229B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TMEM229B MUTATED 1 1 2
TMEM229B WILD-TYPE 61 72 73
'TMEM229B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S13445.  Gene #1322: 'TMEM229B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMEM229B MUTATED 2 1 1 0
TMEM229B WILD-TYPE 98 71 71 121
'TMEM229B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13446.  Gene #1322: 'TMEM229B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMEM229B MUTATED 1 1 1 1 0
TMEM229B WILD-TYPE 58 74 73 118 38
'TMEM229B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S13447.  Gene #1322: 'TMEM229B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMEM229B MUTATED 1 1 1 0 1
TMEM229B WILD-TYPE 50 75 60 71 94
'TMEM229B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.96

Table S13448.  Gene #1322: 'TMEM229B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMEM229B MUTATED 1 2 0 0 0 0 0 1 0
TMEM229B WILD-TYPE 68 46 39 16 53 20 21 37 50
'FSHR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S13449.  Gene #1323: 'FSHR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FSHR MUTATED 3 0 0 2 1
FSHR WILD-TYPE 29 18 46 25 22
'FSHR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S13450.  Gene #1323: 'FSHR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FSHR MUTATED 3 1 2
FSHR WILD-TYPE 40 66 34
'FSHR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 0.33

Table S13451.  Gene #1323: 'FSHR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FSHR MUTATED 0 5 10
FSHR WILD-TYPE 42 168 137
'FSHR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S13452.  Gene #1323: 'FSHR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FSHR MUTATED 5 2 2
FSHR WILD-TYPE 57 71 73
'FSHR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S13453.  Gene #1323: 'FSHR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FSHR MUTATED 2 3 7
FSHR WILD-TYPE 68 117 93
'FSHR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S13454.  Gene #1323: 'FSHR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FSHR MUTATED 3 0 1 1 1 4 0 1 1
FSHR WILD-TYPE 38 26 29 28 38 65 20 13 21
'FSHR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S13455.  Gene #1323: 'FSHR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FSHR MUTATED 3 3 3 6
FSHR WILD-TYPE 97 69 69 115
'FSHR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.76

Table S13456.  Gene #1323: 'FSHR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FSHR MUTATED 4 3 2 3 3
FSHR WILD-TYPE 55 72 72 116 35
'FSHR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.96

Table S13457.  Gene #1323: 'FSHR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FSHR MUTATED 3 2 4 2 3
FSHR WILD-TYPE 48 74 57 69 92
'FSHR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0447 (Fisher's exact test), Q value = 0.22

Table S13458.  Gene #1323: 'FSHR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FSHR MUTATED 0 3 0 1 5 2 0 2 1
FSHR WILD-TYPE 69 45 39 15 48 18 21 36 49

Figure S3477.  Get High-res Image Gene #1323: 'FSHR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FSHR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S13459.  Gene #1323: 'FSHR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FSHR MUTATED 0 1 1 1 0 0
FSHR WILD-TYPE 13 15 13 10 11 9
'FSHR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S13460.  Gene #1323: 'FSHR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FSHR MUTATED 0 1 0 0 0 0 2 0 0
FSHR WILD-TYPE 11 6 7 9 8 7 9 9 5
'VEPH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00794 (Fisher's exact test), Q value = 0.084

Table S13461.  Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
VEPH1 MUTATED 5 0 0 1 0
VEPH1 WILD-TYPE 27 18 46 26 23

Figure S3478.  Get High-res Image Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'VEPH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S13462.  Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
VEPH1 MUTATED 5 1 0
VEPH1 WILD-TYPE 38 66 36

Figure S3479.  Get High-res Image Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'VEPH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S13463.  Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
VEPH1 MUTATED 1 1 14
VEPH1 WILD-TYPE 41 172 133

Figure S3480.  Get High-res Image Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VEPH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S13464.  Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
VEPH1 MUTATED 6 3 2
VEPH1 WILD-TYPE 56 70 73
'VEPH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00476 (Fisher's exact test), Q value = 0.064

Table S13465.  Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
VEPH1 MUTATED 0 5 11
VEPH1 WILD-TYPE 70 115 89

Figure S3481.  Get High-res Image Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'VEPH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.88

Table S13466.  Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
VEPH1 MUTATED 1 0 1 1 2 8 1 1 1
VEPH1 WILD-TYPE 40 26 29 28 37 61 19 13 21
'VEPH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S13467.  Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
VEPH1 MUTATED 3 4 4 6
VEPH1 WILD-TYPE 97 68 68 115
'VEPH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00599 (Fisher's exact test), Q value = 0.073

Table S13468.  Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
VEPH1 MUTATED 1 4 6 1 5
VEPH1 WILD-TYPE 58 71 68 118 33

Figure S3482.  Get High-res Image Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VEPH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S13469.  Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
VEPH1 MUTATED 1 7 2 1 6
VEPH1 WILD-TYPE 50 69 59 70 89
'VEPH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0278 (Fisher's exact test), Q value = 0.17

Table S13470.  Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
VEPH1 MUTATED 1 4 2 3 2 1 0 4 0
VEPH1 WILD-TYPE 68 44 37 13 51 19 21 34 50

Figure S3483.  Get High-res Image Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'VEPH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0837 (Fisher's exact test), Q value = 0.31

Table S13471.  Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
VEPH1 MUTATED 1 0 1 0 3 0
VEPH1 WILD-TYPE 12 16 13 11 8 9
'VEPH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.93

Table S13472.  Gene #1324: 'VEPH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
VEPH1 MUTATED 0 0 0 2 0 1 1 1 0
VEPH1 WILD-TYPE 11 7 7 7 8 6 10 8 5
'IFITM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S13473.  Gene #1325: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IFITM5 MUTATED 0 1 2
IFITM5 WILD-TYPE 42 172 145
'IFITM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S13474.  Gene #1325: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IFITM5 MUTATED 0 1 2
IFITM5 WILD-TYPE 62 72 73
'IFITM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S13475.  Gene #1325: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IFITM5 MUTATED 1 0 2
IFITM5 WILD-TYPE 69 120 98
'IFITM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13476.  Gene #1325: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IFITM5 MUTATED 1 0 0 0 1 1 0 0 0
IFITM5 WILD-TYPE 40 26 30 29 38 68 20 14 22
'IFITM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0809 (Fisher's exact test), Q value = 0.31

Table S13477.  Gene #1325: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IFITM5 MUTATED 0 2 1 0
IFITM5 WILD-TYPE 100 70 71 121
'IFITM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S13478.  Gene #1325: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IFITM5 MUTATED 1 0 2 0 0
IFITM5 WILD-TYPE 58 75 72 119 38
'IFITM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S13479.  Gene #1325: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IFITM5 MUTATED 0 1 1 0 1
IFITM5 WILD-TYPE 51 75 60 71 94
'IFITM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S13480.  Gene #1325: 'IFITM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IFITM5 MUTATED 0 1 0 1 0 0 0 1 0
IFITM5 WILD-TYPE 69 47 39 15 53 20 21 37 50
'SBSN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00915 (Fisher's exact test), Q value = 0.09

Table S13481.  Gene #1326: 'SBSN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SBSN MUTATED 4 0 0 0 0
SBSN WILD-TYPE 28 18 46 27 23

Figure S3484.  Get High-res Image Gene #1326: 'SBSN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SBSN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.095

Table S13482.  Gene #1326: 'SBSN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SBSN MUTATED 4 0 0
SBSN WILD-TYPE 39 67 36

Figure S3485.  Get High-res Image Gene #1326: 'SBSN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SBSN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.16

Table S13483.  Gene #1326: 'SBSN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SBSN MUTATED 1 1 8
SBSN WILD-TYPE 41 172 139

Figure S3486.  Get High-res Image Gene #1326: 'SBSN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SBSN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S13484.  Gene #1326: 'SBSN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SBSN MUTATED 1 2 3
SBSN WILD-TYPE 61 71 72
'SBSN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.91

Table S13485.  Gene #1326: 'SBSN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SBSN MUTATED 2 2 4
SBSN WILD-TYPE 68 118 96
'SBSN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S13486.  Gene #1326: 'SBSN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SBSN MUTATED 2 0 1 0 1 4 0 0 0
SBSN WILD-TYPE 39 26 29 29 38 65 20 14 22
'SBSN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S13487.  Gene #1326: 'SBSN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SBSN MUTATED 1 3 2 4
SBSN WILD-TYPE 99 69 70 117
'SBSN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.22

Table S13488.  Gene #1326: 'SBSN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SBSN MUTATED 0 2 4 1 3
SBSN WILD-TYPE 59 73 70 118 35

Figure S3487.  Get High-res Image Gene #1326: 'SBSN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SBSN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S13489.  Gene #1326: 'SBSN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SBSN MUTATED 0 4 1 1 2
SBSN WILD-TYPE 51 72 60 70 93
'SBSN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.86

Table S13490.  Gene #1326: 'SBSN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SBSN MUTATED 2 2 0 1 1 0 0 2 0
SBSN WILD-TYPE 67 46 39 15 52 20 21 36 50
'SBSN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S13491.  Gene #1326: 'SBSN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SBSN MUTATED 1 2 0 0 0 0
SBSN WILD-TYPE 12 14 14 11 11 9
'SBSN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13492.  Gene #1326: 'SBSN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SBSN MUTATED 1 0 0 1 0 0 1 0 0
SBSN WILD-TYPE 10 7 7 8 8 7 10 9 5
'RUSC2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S13493.  Gene #1327: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RUSC2 MUTATED 2 0 0 2 1
RUSC2 WILD-TYPE 30 18 46 25 22
'RUSC2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S13494.  Gene #1327: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RUSC2 MUTATED 3 1 1
RUSC2 WILD-TYPE 40 66 35
'RUSC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S13495.  Gene #1327: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RUSC2 MUTATED 0 2 10
RUSC2 WILD-TYPE 42 171 137

Figure S3488.  Get High-res Image Gene #1327: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RUSC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.53

Table S13496.  Gene #1327: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RUSC2 MUTATED 1 1 5
RUSC2 WILD-TYPE 61 72 70
'RUSC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S13497.  Gene #1327: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RUSC2 MUTATED 3 5 3
RUSC2 WILD-TYPE 67 115 97
'RUSC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S13498.  Gene #1327: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RUSC2 MUTATED 2 1 1 1 2 3 0 1 0
RUSC2 WILD-TYPE 39 25 29 28 37 66 20 13 22
'RUSC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S13499.  Gene #1327: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RUSC2 MUTATED 1 4 2 5
RUSC2 WILD-TYPE 99 68 70 116
'RUSC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0706 (Fisher's exact test), Q value = 0.29

Table S13500.  Gene #1327: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RUSC2 MUTATED 0 1 5 3 3
RUSC2 WILD-TYPE 59 74 69 116 35
'RUSC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.19

Table S13501.  Gene #1327: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RUSC2 MUTATED 0 6 0 1 5
RUSC2 WILD-TYPE 51 70 61 70 90

Figure S3489.  Get High-res Image Gene #1327: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RUSC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0424 (Fisher's exact test), Q value = 0.22

Table S13502.  Gene #1327: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RUSC2 MUTATED 2 2 1 2 0 1 0 4 0
RUSC2 WILD-TYPE 67 46 38 14 53 19 21 34 50

Figure S3490.  Get High-res Image Gene #1327: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CLVS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S13503.  Gene #1328: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CLVS1 MUTATED 1 4 5
CLVS1 WILD-TYPE 41 169 142
'CLVS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.79

Table S13504.  Gene #1328: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CLVS1 MUTATED 3 3 1
CLVS1 WILD-TYPE 59 70 74
'CLVS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S13505.  Gene #1328: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CLVS1 MUTATED 0 6 2
CLVS1 WILD-TYPE 70 114 98
'CLVS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.85

Table S13506.  Gene #1328: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CLVS1 MUTATED 1 1 0 2 1 1 1 1 0
CLVS1 WILD-TYPE 40 25 30 27 38 68 19 13 22
'CLVS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S13507.  Gene #1328: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CLVS1 MUTATED 4 1 2 3
CLVS1 WILD-TYPE 96 71 70 118
'CLVS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 0.23

Table S13508.  Gene #1328: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CLVS1 MUTATED 3 4 0 1 2
CLVS1 WILD-TYPE 56 71 74 118 36

Figure S3491.  Get High-res Image Gene #1328: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CLVS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.76

Table S13509.  Gene #1328: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CLVS1 MUTATED 2 0 2 3 3
CLVS1 WILD-TYPE 49 76 59 68 92
'CLVS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S13510.  Gene #1328: 'CLVS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CLVS1 MUTATED 4 2 0 0 1 0 0 2 1
CLVS1 WILD-TYPE 65 46 39 16 52 20 21 36 49
'FOXA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13511.  Gene #1329: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FOXA2 MUTATED 0 3 3
FOXA2 WILD-TYPE 42 170 144
'FOXA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S13512.  Gene #1329: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FOXA2 MUTATED 0 2 3
FOXA2 WILD-TYPE 62 71 72
'FOXA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S13513.  Gene #1329: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FOXA2 MUTATED 0 3 1
FOXA2 WILD-TYPE 70 117 99
'FOXA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S13514.  Gene #1329: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FOXA2 MUTATED 0 1 0 2 0 1 0 0 0
FOXA2 WILD-TYPE 41 25 30 27 39 68 20 14 22
'FOXA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.55

Table S13515.  Gene #1329: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FOXA2 MUTATED 2 3 0 1
FOXA2 WILD-TYPE 98 69 72 120
'FOXA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S13516.  Gene #1329: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FOXA2 MUTATED 0 2 3 1 0
FOXA2 WILD-TYPE 59 73 71 118 38
'FOXA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S13517.  Gene #1329: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FOXA2 MUTATED 1 2 1 1 1
FOXA2 WILD-TYPE 50 74 60 70 94
'FOXA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.036 (Fisher's exact test), Q value = 0.2

Table S13518.  Gene #1329: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FOXA2 MUTATED 0 1 1 2 0 1 0 0 1
FOXA2 WILD-TYPE 69 47 38 14 53 19 21 38 49

Figure S3492.  Get High-res Image Gene #1329: 'FOXA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM70A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S13519.  Gene #1330: 'FAM70A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM70A MUTATED 0 2 5
FAM70A WILD-TYPE 42 171 142
'FAM70A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S13520.  Gene #1330: 'FAM70A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM70A MUTATED 2 3 1
FAM70A WILD-TYPE 60 70 74
'FAM70A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S13521.  Gene #1330: 'FAM70A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM70A MUTATED 0 2 4
FAM70A WILD-TYPE 70 118 96
'FAM70A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 0.95

Table S13522.  Gene #1330: 'FAM70A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM70A MUTATED 1 1 0 0 0 4 0 0 0
FAM70A WILD-TYPE 40 25 30 29 39 65 20 14 22
'FAM70A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.94

Table S13523.  Gene #1330: 'FAM70A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM70A MUTATED 3 2 1 1
FAM70A WILD-TYPE 97 70 71 120
'FAM70A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0644 (Fisher's exact test), Q value = 0.27

Table S13524.  Gene #1330: 'FAM70A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM70A MUTATED 1 4 1 0 1
FAM70A WILD-TYPE 58 71 73 119 37
'FAM70A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S13525.  Gene #1330: 'FAM70A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM70A MUTATED 2 2 1 0 1
FAM70A WILD-TYPE 49 74 60 71 94
'FAM70A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.77

Table S13526.  Gene #1330: 'FAM70A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM70A MUTATED 2 1 0 1 0 1 0 0 1
FAM70A WILD-TYPE 67 47 39 15 53 19 21 38 49
'MAOB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.18

Table S13527.  Gene #1331: 'MAOB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAOB MUTATED 1 0 5
MAOB WILD-TYPE 41 173 142

Figure S3493.  Get High-res Image Gene #1331: 'MAOB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAOB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.93

Table S13528.  Gene #1331: 'MAOB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAOB MUTATED 1 1 3
MAOB WILD-TYPE 61 72 72
'MAOB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S13529.  Gene #1331: 'MAOB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAOB MUTATED 0 2 4
MAOB WILD-TYPE 70 118 96
'MAOB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S13530.  Gene #1331: 'MAOB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAOB MUTATED 1 0 0 1 0 3 1 0 0
MAOB WILD-TYPE 40 26 30 28 39 66 19 14 22
'MAOB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.72

Table S13531.  Gene #1331: 'MAOB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAOB MUTATED 1 3 1 1
MAOB WILD-TYPE 99 69 71 120
'MAOB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S13532.  Gene #1331: 'MAOB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAOB MUTATED 1 1 3 0 1
MAOB WILD-TYPE 58 74 71 119 37
'MAOB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S13533.  Gene #1331: 'MAOB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAOB MUTATED 0 3 0 2 1
MAOB WILD-TYPE 51 73 61 69 94
'MAOB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S13534.  Gene #1331: 'MAOB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAOB MUTATED 2 1 0 1 1 0 0 1 0
MAOB WILD-TYPE 67 47 39 15 52 20 21 37 50
'CCDC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.17

Table S13535.  Gene #1332: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCDC6 MUTATED 0 2 9
CCDC6 WILD-TYPE 42 171 138

Figure S3494.  Get High-res Image Gene #1332: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 0.21

Table S13536.  Gene #1332: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCDC6 MUTATED 5 0 4
CCDC6 WILD-TYPE 57 73 71

Figure S3495.  Get High-res Image Gene #1332: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CCDC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S13537.  Gene #1332: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCDC6 MUTATED 2 3 6
CCDC6 WILD-TYPE 68 117 94
'CCDC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S13538.  Gene #1332: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCDC6 MUTATED 2 1 0 1 1 4 1 1 0
CCDC6 WILD-TYPE 39 25 30 28 38 65 19 13 22
'CCDC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S13539.  Gene #1332: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCDC6 MUTATED 1 4 3 3
CCDC6 WILD-TYPE 99 68 69 118
'CCDC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S13540.  Gene #1332: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCDC6 MUTATED 2 2 4 2 1
CCDC6 WILD-TYPE 57 73 70 117 37
'CCDC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.41

Table S13541.  Gene #1332: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCDC6 MUTATED 1 5 3 0 2
CCDC6 WILD-TYPE 50 71 58 71 93
'CCDC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 0.99

Table S13542.  Gene #1332: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCDC6 MUTATED 3 2 1 1 0 1 1 1 1
CCDC6 WILD-TYPE 66 46 38 15 53 19 20 37 49
'WNK4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.61

Table S13543.  Gene #1333: 'WNK4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
WNK4 MUTATED 2 0 0 1 0
WNK4 WILD-TYPE 30 18 46 26 23
'WNK4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0383 (Fisher's exact test), Q value = 0.21

Table S13544.  Gene #1333: 'WNK4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
WNK4 MUTATED 3 0 0
WNK4 WILD-TYPE 40 67 36

Figure S3496.  Get High-res Image Gene #1333: 'WNK4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'WNK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0069

Table S13545.  Gene #1333: 'WNK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WNK4 MUTATED 0 0 11
WNK4 WILD-TYPE 42 173 136

Figure S3497.  Get High-res Image Gene #1333: 'WNK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WNK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 0.3

Table S13546.  Gene #1333: 'WNK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WNK4 MUTATED 4 0 4
WNK4 WILD-TYPE 58 73 71
'WNK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S13547.  Gene #1333: 'WNK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WNK4 MUTATED 1 2 6
WNK4 WILD-TYPE 69 118 94
'WNK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.56

Table S13548.  Gene #1333: 'WNK4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WNK4 MUTATED 0 1 0 0 2 6 0 0 0
WNK4 WILD-TYPE 41 25 30 29 37 63 20 14 22
'WNK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 0.2

Table S13549.  Gene #1333: 'WNK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WNK4 MUTATED 0 5 3 3
WNK4 WILD-TYPE 100 67 69 118

Figure S3498.  Get High-res Image Gene #1333: 'WNK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'WNK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00127 (Fisher's exact test), Q value = 0.029

Table S13550.  Gene #1333: 'WNK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WNK4 MUTATED 0 2 6 0 3
WNK4 WILD-TYPE 59 73 68 119 35

Figure S3499.  Get High-res Image Gene #1333: 'WNK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WNK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S13551.  Gene #1333: 'WNK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WNK4 MUTATED 1 3 2 0 5
WNK4 WILD-TYPE 50 73 59 71 90
'WNK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0558 (Fisher's exact test), Q value = 0.25

Table S13552.  Gene #1333: 'WNK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WNK4 MUTATED 1 3 0 2 0 0 1 3 1
WNK4 WILD-TYPE 68 45 39 14 53 20 20 35 49
'METT5D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S13553.  Gene #1334: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
METT5D1 MUTATED 0 1 5
METT5D1 WILD-TYPE 42 172 142
'METT5D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S13554.  Gene #1334: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
METT5D1 MUTATED 0 2 3
METT5D1 WILD-TYPE 62 71 72
'METT5D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S13555.  Gene #1334: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
METT5D1 MUTATED 0 2 3
METT5D1 WILD-TYPE 70 118 97
'METT5D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.92

Table S13556.  Gene #1334: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
METT5D1 MUTATED 0 1 0 1 0 2 1 0 0
METT5D1 WILD-TYPE 41 25 30 28 39 67 19 14 22
'METT5D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S13557.  Gene #1334: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
METT5D1 MUTATED 2 2 1 1
METT5D1 WILD-TYPE 98 70 71 120
'METT5D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.073 (Fisher's exact test), Q value = 0.29

Table S13558.  Gene #1334: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
METT5D1 MUTATED 0 2 3 0 1
METT5D1 WILD-TYPE 59 73 71 119 37
'METT5D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.62

Table S13559.  Gene #1334: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
METT5D1 MUTATED 0 2 0 3 1
METT5D1 WILD-TYPE 51 74 61 68 94
'METT5D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S13560.  Gene #1334: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
METT5D1 MUTATED 1 0 1 1 2 0 0 1 0
METT5D1 WILD-TYPE 68 48 38 15 51 20 21 37 50
'METT5D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.62

Table S13561.  Gene #1334: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
METT5D1 MUTATED 2 0 1 0 0 0
METT5D1 WILD-TYPE 11 16 13 11 11 9
'METT5D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S13562.  Gene #1334: 'METT5D1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
METT5D1 MUTATED 0 0 0 1 1 0 0 1 0
METT5D1 WILD-TYPE 11 7 7 8 7 7 11 8 5
'SCYL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00517 (Fisher's exact test), Q value = 0.067

Table S13563.  Gene #1335: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SCYL2 MUTATED 1 2 12
SCYL2 WILD-TYPE 41 171 135

Figure S3500.  Get High-res Image Gene #1335: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SCYL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0609 (Fisher's exact test), Q value = 0.26

Table S13564.  Gene #1335: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SCYL2 MUTATED 4 1 8
SCYL2 WILD-TYPE 58 72 67
'SCYL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S13565.  Gene #1335: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SCYL2 MUTATED 3 4 5
SCYL2 WILD-TYPE 67 116 95
'SCYL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S13566.  Gene #1335: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SCYL2 MUTATED 2 1 0 2 0 3 3 0 1
SCYL2 WILD-TYPE 39 25 30 27 39 66 17 14 21
'SCYL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.16

Table S13567.  Gene #1335: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SCYL2 MUTATED 3 8 3 2
SCYL2 WILD-TYPE 97 64 69 119

Figure S3501.  Get High-res Image Gene #1335: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SCYL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00473 (Fisher's exact test), Q value = 0.064

Table S13568.  Gene #1335: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SCYL2 MUTATED 1 4 9 1 1
SCYL2 WILD-TYPE 58 71 65 118 37

Figure S3502.  Get High-res Image Gene #1335: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SCYL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.089 (Fisher's exact test), Q value = 0.32

Table S13569.  Gene #1335: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SCYL2 MUTATED 2 8 1 1 4
SCYL2 WILD-TYPE 49 68 60 70 91
'SCYL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.89

Table S13570.  Gene #1335: 'SCYL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SCYL2 MUTATED 2 3 2 2 4 0 0 2 1
SCYL2 WILD-TYPE 67 45 37 14 49 20 21 36 49
'RBM15B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00211 (Fisher's exact test), Q value = 0.039

Table S13571.  Gene #1336: 'RBM15B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RBM15B MUTATED 0 0 8
RBM15B WILD-TYPE 42 173 139

Figure S3503.  Get High-res Image Gene #1336: 'RBM15B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBM15B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S13572.  Gene #1336: 'RBM15B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RBM15B MUTATED 1 1 4
RBM15B WILD-TYPE 61 72 71
'RBM15B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S13573.  Gene #1336: 'RBM15B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RBM15B MUTATED 3 1 4
RBM15B WILD-TYPE 67 119 96
'RBM15B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S13574.  Gene #1336: 'RBM15B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RBM15B MUTATED 2 0 0 0 2 3 1 0 0
RBM15B WILD-TYPE 39 26 30 29 37 66 19 14 22
'RBM15B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S13575.  Gene #1336: 'RBM15B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RBM15B MUTATED 1 3 2 2
RBM15B WILD-TYPE 99 69 70 119
'RBM15B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S13576.  Gene #1336: 'RBM15B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RBM15B MUTATED 1 0 5 1 1
RBM15B WILD-TYPE 58 75 69 118 37

Figure S3504.  Get High-res Image Gene #1336: 'RBM15B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBM15B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S13577.  Gene #1336: 'RBM15B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RBM15B MUTATED 0 4 0 1 2
RBM15B WILD-TYPE 51 72 61 70 93
'RBM15B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0493 (Fisher's exact test), Q value = 0.24

Table S13578.  Gene #1336: 'RBM15B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RBM15B MUTATED 1 2 0 2 0 0 0 2 0
RBM15B WILD-TYPE 68 46 39 14 53 20 21 36 50

Figure S3505.  Get High-res Image Gene #1336: 'RBM15B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RBM15B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.65

Table S13579.  Gene #1336: 'RBM15B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RBM15B MUTATED 0 1 0 1 2 0
RBM15B WILD-TYPE 13 15 14 10 9 9
'RBM15B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S13580.  Gene #1336: 'RBM15B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RBM15B MUTATED 0 0 0 1 0 0 3 0 0
RBM15B WILD-TYPE 11 7 7 8 8 7 8 9 5
'DHX36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S13581.  Gene #1337: 'DHX36 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DHX36 MUTATED 1 3 8
DHX36 WILD-TYPE 41 170 139
'DHX36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0457 (Fisher's exact test), Q value = 0.23

Table S13582.  Gene #1337: 'DHX36 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DHX36 MUTATED 7 1 3
DHX36 WILD-TYPE 55 72 72

Figure S3506.  Get High-res Image Gene #1337: 'DHX36 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DHX36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0284 (Fisher's exact test), Q value = 0.18

Table S13583.  Gene #1337: 'DHX36 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DHX36 MUTATED 1 1 7
DHX36 WILD-TYPE 69 119 93

Figure S3507.  Get High-res Image Gene #1337: 'DHX36 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DHX36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S13584.  Gene #1337: 'DHX36 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DHX36 MUTATED 1 0 0 1 0 6 0 0 1
DHX36 WILD-TYPE 40 26 30 28 39 63 20 14 21
'DHX36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0523 (Fisher's exact test), Q value = 0.24

Table S13585.  Gene #1337: 'DHX36 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DHX36 MUTATED 2 4 5 1
DHX36 WILD-TYPE 98 68 67 120
'DHX36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0047 (Fisher's exact test), Q value = 0.064

Table S13586.  Gene #1337: 'DHX36 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DHX36 MUTATED 1 3 7 0 1
DHX36 WILD-TYPE 58 72 67 119 37

Figure S3508.  Get High-res Image Gene #1337: 'DHX36 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DHX36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S13587.  Gene #1337: 'DHX36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DHX36 MUTATED 0 6 2 2 2
DHX36 WILD-TYPE 51 70 59 69 93
'DHX36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.63

Table S13588.  Gene #1337: 'DHX36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DHX36 MUTATED 2 2 1 3 2 0 0 1 1
DHX36 WILD-TYPE 67 46 38 13 51 20 21 37 49
'DHX36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.18

Table S13589.  Gene #1337: 'DHX36 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DHX36 MUTATED 0 0 4 0 1 1
DHX36 WILD-TYPE 13 16 10 11 10 8

Figure S3509.  Get High-res Image Gene #1337: 'DHX36 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DHX36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.99

Table S13590.  Gene #1337: 'DHX36 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DHX36 MUTATED 0 0 0 1 2 1 1 1 0
DHX36 WILD-TYPE 11 7 7 8 6 6 10 8 5
'GFRAL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.33

Table S13591.  Gene #1338: 'GFRAL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GFRAL MUTATED 1 0 3
GFRAL WILD-TYPE 41 173 144
'GFRAL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S13592.  Gene #1338: 'GFRAL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GFRAL MUTATED 3 0 1
GFRAL WILD-TYPE 59 73 74
'GFRAL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.92

Table S13593.  Gene #1338: 'GFRAL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GFRAL MUTATED 0 1 2
GFRAL WILD-TYPE 70 119 98
'GFRAL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S13594.  Gene #1338: 'GFRAL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GFRAL MUTATED 1 1 0 0 0 1 0 0 0
GFRAL WILD-TYPE 40 25 30 29 39 68 20 14 22
'GFRAL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S13595.  Gene #1338: 'GFRAL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GFRAL MUTATED 0 2 1 1
GFRAL WILD-TYPE 100 70 71 120
'GFRAL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S13596.  Gene #1338: 'GFRAL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GFRAL MUTATED 0 1 2 1 0
GFRAL WILD-TYPE 59 74 72 118 38
'GFRAL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S13597.  Gene #1338: 'GFRAL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GFRAL MUTATED 0 3 0 0 1
GFRAL WILD-TYPE 51 73 61 71 94
'GFRAL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S13598.  Gene #1338: 'GFRAL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GFRAL MUTATED 2 0 0 1 0 0 0 0 1
GFRAL WILD-TYPE 67 48 39 15 53 20 21 38 49
'TAB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S13599.  Gene #1339: 'TAB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TAB3 MUTATED 1 4 5
TAB3 WILD-TYPE 41 169 142
'TAB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.17

Table S13600.  Gene #1339: 'TAB3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TAB3 MUTATED 5 2 0
TAB3 WILD-TYPE 57 71 75

Figure S3510.  Get High-res Image Gene #1339: 'TAB3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TAB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S13601.  Gene #1339: 'TAB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TAB3 MUTATED 1 3 4
TAB3 WILD-TYPE 69 117 96
'TAB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S13602.  Gene #1339: 'TAB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TAB3 MUTATED 0 1 1 0 1 4 0 1 0
TAB3 WILD-TYPE 41 25 29 29 38 65 20 13 22
'TAB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.54

Table S13603.  Gene #1339: 'TAB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TAB3 MUTATED 3 0 4 3
TAB3 WILD-TYPE 97 72 68 118
'TAB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0074 (Fisher's exact test), Q value = 0.081

Table S13604.  Gene #1339: 'TAB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TAB3 MUTATED 4 1 2 0 3
TAB3 WILD-TYPE 55 74 72 119 35

Figure S3511.  Get High-res Image Gene #1339: 'TAB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TAB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0886 (Fisher's exact test), Q value = 0.32

Table S13605.  Gene #1339: 'TAB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TAB3 MUTATED 0 3 4 0 2
TAB3 WILD-TYPE 51 73 57 71 93
'TAB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S13606.  Gene #1339: 'TAB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TAB3 MUTATED 1 3 0 0 2 1 0 2 0
TAB3 WILD-TYPE 68 45 39 16 51 19 21 36 50
'TAB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S13607.  Gene #1339: 'TAB3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TAB3 MUTATED 0 2 1 0 1 0
TAB3 WILD-TYPE 13 14 13 11 10 9
'TAB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 0.95

Table S13608.  Gene #1339: 'TAB3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TAB3 MUTATED 1 1 0 0 0 0 2 0 0
TAB3 WILD-TYPE 10 6 7 9 8 7 9 9 5
'NXPH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.098

Table S13609.  Gene #1340: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NXPH1 MUTATED 0 0 0 3 0
NXPH1 WILD-TYPE 32 18 46 24 23

Figure S3512.  Get High-res Image Gene #1340: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NXPH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S13610.  Gene #1340: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NXPH1 MUTATED 1 2 0
NXPH1 WILD-TYPE 42 65 36
'NXPH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00744 (Fisher's exact test), Q value = 0.081

Table S13611.  Gene #1340: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NXPH1 MUTATED 0 0 7
NXPH1 WILD-TYPE 42 173 140

Figure S3513.  Get High-res Image Gene #1340: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NXPH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00199 (Fisher's exact test), Q value = 0.038

Table S13612.  Gene #1340: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NXPH1 MUTATED 5 0 0
NXPH1 WILD-TYPE 57 73 75

Figure S3514.  Get High-res Image Gene #1340: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NXPH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13613.  Gene #1340: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NXPH1 MUTATED 2 3 3
NXPH1 WILD-TYPE 68 117 97
'NXPH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.53

Table S13614.  Gene #1340: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NXPH1 MUTATED 1 0 1 0 0 3 1 2 0
NXPH1 WILD-TYPE 40 26 29 29 39 66 19 12 22
'NXPH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 0.28

Table S13615.  Gene #1340: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NXPH1 MUTATED 0 4 2 2
NXPH1 WILD-TYPE 100 68 70 119
'NXPH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S13616.  Gene #1340: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NXPH1 MUTATED 0 1 4 2 1
NXPH1 WILD-TYPE 59 74 70 117 37
'NXPH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S13617.  Gene #1340: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NXPH1 MUTATED 0 3 2 0 2
NXPH1 WILD-TYPE 51 73 59 71 93
'NXPH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0597 (Fisher's exact test), Q value = 0.26

Table S13618.  Gene #1340: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NXPH1 MUTATED 3 1 0 1 0 2 0 0 0
NXPH1 WILD-TYPE 66 47 39 15 53 18 21 38 50
'NXPH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S13619.  Gene #1340: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NXPH1 MUTATED 0 0 2 1 1 0
NXPH1 WILD-TYPE 13 16 12 10 10 9
'NXPH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.92

Table S13620.  Gene #1340: 'NXPH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NXPH1 MUTATED 0 0 0 1 1 0 2 0 0
NXPH1 WILD-TYPE 11 7 7 8 7 7 9 9 5
'KCNN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13621.  Gene #1341: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KCNN4 MUTATED 0 4 3
KCNN4 WILD-TYPE 42 169 144
'KCNN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S13622.  Gene #1341: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KCNN4 MUTATED 3 1 3
KCNN4 WILD-TYPE 59 72 72
'KCNN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S13623.  Gene #1341: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KCNN4 MUTATED 0 2 3
KCNN4 WILD-TYPE 70 118 97
'KCNN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S13624.  Gene #1341: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KCNN4 MUTATED 1 0 0 0 1 1 1 1 0
KCNN4 WILD-TYPE 40 26 30 29 38 68 19 13 22
'KCNN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.63

Table S13625.  Gene #1341: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KCNN4 MUTATED 1 3 2 1
KCNN4 WILD-TYPE 99 69 70 120
'KCNN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0842 (Fisher's exact test), Q value = 0.31

Table S13626.  Gene #1341: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KCNN4 MUTATED 3 0 3 1 0
KCNN4 WILD-TYPE 56 75 71 118 38
'KCNN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S13627.  Gene #1341: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KCNN4 MUTATED 3 3 1 0 0
KCNN4 WILD-TYPE 48 73 60 71 95

Figure S3515.  Get High-res Image Gene #1341: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KCNN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.56

Table S13628.  Gene #1341: 'KCNN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KCNN4 MUTATED 3 1 0 0 1 2 0 0 0
KCNN4 WILD-TYPE 66 47 39 16 52 18 21 38 50
'SLC9A9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00067 (Fisher's exact test), Q value = 0.019

Table S13629.  Gene #1342: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC9A9 MUTATED 7 0 0 2 0
SLC9A9 WILD-TYPE 25 18 46 25 23

Figure S3516.  Get High-res Image Gene #1342: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SLC9A9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00679 (Fisher's exact test), Q value = 0.077

Table S13630.  Gene #1342: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC9A9 MUTATED 7 1 1
SLC9A9 WILD-TYPE 36 66 35

Figure S3517.  Get High-res Image Gene #1342: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SLC9A9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0484 (Fisher's exact test), Q value = 0.24

Table S13631.  Gene #1342: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC9A9 MUTATED 1 6 14
SLC9A9 WILD-TYPE 41 167 133

Figure S3518.  Get High-res Image Gene #1342: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC9A9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S13632.  Gene #1342: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC9A9 MUTATED 4 3 4
SLC9A9 WILD-TYPE 58 70 71
'SLC9A9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S13633.  Gene #1342: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC9A9 MUTATED 3 7 6
SLC9A9 WILD-TYPE 67 113 94
'SLC9A9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.53

Table S13634.  Gene #1342: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC9A9 MUTATED 2 3 3 1 0 4 0 0 3
SLC9A9 WILD-TYPE 39 23 27 28 39 65 20 14 19
'SLC9A9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.89

Table S13635.  Gene #1342: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC9A9 MUTATED 4 3 4 10
SLC9A9 WILD-TYPE 96 69 68 111
'SLC9A9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00183 (Fisher's exact test), Q value = 0.036

Table S13636.  Gene #1342: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC9A9 MUTATED 4 4 3 2 8
SLC9A9 WILD-TYPE 55 71 71 117 30

Figure S3519.  Get High-res Image Gene #1342: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC9A9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S13637.  Gene #1342: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC9A9 MUTATED 2 6 3 1 7
SLC9A9 WILD-TYPE 49 70 58 70 88
'SLC9A9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S13638.  Gene #1342: 'SLC9A9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC9A9 MUTATED 2 4 1 1 3 2 1 5 0
SLC9A9 WILD-TYPE 67 44 38 15 50 18 20 33 50
'ATP6V0A4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S13639.  Gene #1343: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATP6V0A4 MUTATED 2 0 0 2 0
ATP6V0A4 WILD-TYPE 30 18 46 25 23
'ATP6V0A4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S13640.  Gene #1343: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATP6V0A4 MUTATED 2 1 1
ATP6V0A4 WILD-TYPE 41 66 35
'ATP6V0A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0069

Table S13641.  Gene #1343: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATP6V0A4 MUTATED 0 0 11
ATP6V0A4 WILD-TYPE 42 173 136

Figure S3520.  Get High-res Image Gene #1343: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP6V0A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S13642.  Gene #1343: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATP6V0A4 MUTATED 3 0 4
ATP6V0A4 WILD-TYPE 59 73 71
'ATP6V0A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.6

Table S13643.  Gene #1343: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATP6V0A4 MUTATED 0 4 4
ATP6V0A4 WILD-TYPE 70 116 96
'ATP6V0A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.991 (Fisher's exact test), Q value = 1

Table S13644.  Gene #1343: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATP6V0A4 MUTATED 1 0 1 1 1 3 1 0 0
ATP6V0A4 WILD-TYPE 40 26 29 28 38 66 19 14 22
'ATP6V0A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.31

Table S13645.  Gene #1343: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATP6V0A4 MUTATED 0 3 4 4
ATP6V0A4 WILD-TYPE 100 69 68 117
'ATP6V0A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S13646.  Gene #1343: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATP6V0A4 MUTATED 1 0 6 2 2
ATP6V0A4 WILD-TYPE 58 75 68 117 36

Figure S3521.  Get High-res Image Gene #1343: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATP6V0A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0931 (Fisher's exact test), Q value = 0.33

Table S13647.  Gene #1343: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATP6V0A4 MUTATED 0 6 1 1 2
ATP6V0A4 WILD-TYPE 51 70 60 70 93
'ATP6V0A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S13648.  Gene #1343: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATP6V0A4 MUTATED 1 4 0 1 2 1 0 1 0
ATP6V0A4 WILD-TYPE 68 44 39 15 51 19 21 37 50
'ATG10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0627 (Fisher's exact test), Q value = 0.27

Table S13649.  Gene #1344: 'ATG10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATG10 MUTATED 0 0 4
ATG10 WILD-TYPE 42 173 143
'ATG10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S13650.  Gene #1344: 'ATG10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATG10 MUTATED 0 2 2
ATG10 WILD-TYPE 70 118 98
'ATG10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S13651.  Gene #1344: 'ATG10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATG10 MUTATED 0 0 1 1 0 2 0 0 0
ATG10 WILD-TYPE 41 26 29 28 39 67 20 14 22
'ATG10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.95

Table S13652.  Gene #1344: 'ATG10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATG10 MUTATED 0 1 1 2
ATG10 WILD-TYPE 100 71 71 119
'ATG10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S13653.  Gene #1344: 'ATG10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATG10 MUTATED 0 0 2 1 1
ATG10 WILD-TYPE 59 75 72 118 37
'ATG10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S13654.  Gene #1344: 'ATG10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATG10 MUTATED 0 2 0 0 2
ATG10 WILD-TYPE 51 74 61 71 93
'ATG10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S13655.  Gene #1344: 'ATG10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATG10 MUTATED 0 2 0 0 0 1 0 1 0
ATG10 WILD-TYPE 69 46 39 16 53 19 21 37 50
'MORC2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S13656.  Gene #1345: 'MORC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MORC2 MUTATED 2 0 1 0 0
MORC2 WILD-TYPE 30 18 45 27 23
'MORC2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S13657.  Gene #1345: 'MORC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MORC2 MUTATED 2 0 1
MORC2 WILD-TYPE 41 67 35
'MORC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.53

Table S13658.  Gene #1345: 'MORC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MORC2 MUTATED 2 3 7
MORC2 WILD-TYPE 40 170 140
'MORC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S13659.  Gene #1345: 'MORC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MORC2 MUTATED 5 2 2
MORC2 WILD-TYPE 57 71 73
'MORC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S13660.  Gene #1345: 'MORC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MORC2 MUTATED 1 6 4
MORC2 WILD-TYPE 69 114 96
'MORC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S13661.  Gene #1345: 'MORC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MORC2 MUTATED 0 1 0 3 1 5 0 1 0
MORC2 WILD-TYPE 41 25 30 26 38 64 20 13 22
'MORC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S13662.  Gene #1345: 'MORC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MORC2 MUTATED 2 3 3 4
MORC2 WILD-TYPE 98 69 69 117
'MORC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S13663.  Gene #1345: 'MORC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MORC2 MUTATED 0 3 5 2 2
MORC2 WILD-TYPE 59 72 69 117 36
'MORC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.53

Table S13664.  Gene #1345: 'MORC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MORC2 MUTATED 2 5 0 1 3
MORC2 WILD-TYPE 49 71 61 70 92
'MORC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S13665.  Gene #1345: 'MORC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MORC2 MUTATED 2 2 0 2 2 1 0 0 2
MORC2 WILD-TYPE 67 46 39 14 51 19 21 38 48
'MORC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S13666.  Gene #1345: 'MORC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MORC2 MUTATED 1 1 0 0 2 0
MORC2 WILD-TYPE 12 15 14 11 9 9
'MORC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.98

Table S13667.  Gene #1345: 'MORC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MORC2 MUTATED 1 0 0 2 0 0 1 0 0
MORC2 WILD-TYPE 10 7 7 7 8 7 10 9 5
'GRIN2B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.076 (Fisher's exact test), Q value = 0.3

Table S13668.  Gene #1346: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GRIN2B MUTATED 3 0 0 2 0
GRIN2B WILD-TYPE 29 18 46 25 23
'GRIN2B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0688 (Fisher's exact test), Q value = 0.28

Table S13669.  Gene #1346: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GRIN2B MUTATED 4 1 0
GRIN2B WILD-TYPE 39 66 36
'GRIN2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00242 (Fisher's exact test), Q value = 0.042

Table S13670.  Gene #1346: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GRIN2B MUTATED 1 6 19
GRIN2B WILD-TYPE 41 167 128

Figure S3522.  Get High-res Image Gene #1346: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GRIN2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S13671.  Gene #1346: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GRIN2B MUTATED 5 5 10
GRIN2B WILD-TYPE 57 68 65
'GRIN2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.5

Table S13672.  Gene #1346: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GRIN2B MUTATED 2 7 10
GRIN2B WILD-TYPE 68 113 90
'GRIN2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S13673.  Gene #1346: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GRIN2B MUTATED 2 2 2 3 1 8 1 0 0
GRIN2B WILD-TYPE 39 24 28 26 38 61 19 14 22
'GRIN2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S13674.  Gene #1346: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GRIN2B MUTATED 5 9 6 6
GRIN2B WILD-TYPE 95 63 66 115
'GRIN2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0079

Table S13675.  Gene #1346: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GRIN2B MUTATED 4 4 12 1 5
GRIN2B WILD-TYPE 55 71 62 118 33

Figure S3523.  Get High-res Image Gene #1346: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GRIN2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S13676.  Gene #1346: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GRIN2B MUTATED 3 10 5 2 4
GRIN2B WILD-TYPE 48 66 56 69 91
'GRIN2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0368 (Fisher's exact test), Q value = 0.2

Table S13677.  Gene #1346: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GRIN2B MUTATED 7 4 1 4 2 2 1 3 0
GRIN2B WILD-TYPE 62 44 38 12 51 18 20 35 50

Figure S3524.  Get High-res Image Gene #1346: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GRIN2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.27

Table S13678.  Gene #1346: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GRIN2B MUTATED 0 0 1 1 3 2
GRIN2B WILD-TYPE 13 16 13 10 8 7
'GRIN2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.989 (Fisher's exact test), Q value = 1

Table S13679.  Gene #1346: 'GRIN2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GRIN2B MUTATED 1 0 1 1 1 0 2 1 0
GRIN2B WILD-TYPE 10 7 6 8 7 7 9 8 5
'FSCB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S13680.  Gene #1347: 'FSCB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FSCB MUTATED 3 0 1 2 0
FSCB WILD-TYPE 29 18 45 25 23
'FSCB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S13681.  Gene #1347: 'FSCB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FSCB MUTATED 4 1 1
FSCB WILD-TYPE 39 66 35
'FSCB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0767 (Fisher's exact test), Q value = 0.3

Table S13682.  Gene #1347: 'FSCB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FSCB MUTATED 3 5 12
FSCB WILD-TYPE 39 168 135
'FSCB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S13683.  Gene #1347: 'FSCB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FSCB MUTATED 5 4 5
FSCB WILD-TYPE 57 69 70
'FSCB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.053 (Fisher's exact test), Q value = 0.25

Table S13684.  Gene #1347: 'FSCB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FSCB MUTATED 1 6 10
FSCB WILD-TYPE 69 114 90
'FSCB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S13685.  Gene #1347: 'FSCB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FSCB MUTATED 2 0 2 2 2 6 1 1 1
FSCB WILD-TYPE 39 26 28 27 37 63 19 13 21
'FSCB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S13686.  Gene #1347: 'FSCB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FSCB MUTATED 3 4 6 7
FSCB WILD-TYPE 97 68 66 114
'FSCB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S13687.  Gene #1347: 'FSCB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FSCB MUTATED 3 3 7 3 4
FSCB WILD-TYPE 56 72 67 116 34
'FSCB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.97

Table S13688.  Gene #1347: 'FSCB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FSCB MUTATED 4 5 4 2 4
FSCB WILD-TYPE 47 71 57 69 91
'FSCB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S13689.  Gene #1347: 'FSCB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FSCB MUTATED 1 3 2 3 4 2 0 3 1
FSCB WILD-TYPE 68 45 37 13 49 18 21 35 49
'FSCB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 0.26

Table S13690.  Gene #1347: 'FSCB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FSCB MUTATED 0 0 3 0 1 0
FSCB WILD-TYPE 13 16 11 11 10 9
'FSCB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0225 (Fisher's exact test), Q value = 0.15

Table S13691.  Gene #1347: 'FSCB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FSCB MUTATED 0 0 0 0 3 0 1 0 0
FSCB WILD-TYPE 11 7 7 9 5 7 10 9 5

Figure S3525.  Get High-res Image Gene #1347: 'FSCB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DLGAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S13692.  Gene #1348: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DLGAP5 MUTATED 0 4 4
DLGAP5 WILD-TYPE 42 169 143
'DLGAP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0971 (Fisher's exact test), Q value = 0.34

Table S13693.  Gene #1348: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DLGAP5 MUTATED 3 4 0
DLGAP5 WILD-TYPE 59 69 75
'DLGAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S13694.  Gene #1348: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DLGAP5 MUTATED 0 5 3
DLGAP5 WILD-TYPE 70 115 97
'DLGAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S13695.  Gene #1348: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DLGAP5 MUTATED 1 0 1 2 1 3 0 0 0
DLGAP5 WILD-TYPE 40 26 29 27 38 66 20 14 22
'DLGAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.96

Table S13696.  Gene #1348: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DLGAP5 MUTATED 4 1 1 2
DLGAP5 WILD-TYPE 96 71 71 119
'DLGAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S13697.  Gene #1348: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DLGAP5 MUTATED 2 4 0 1 1
DLGAP5 WILD-TYPE 57 71 74 118 37
'DLGAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S13698.  Gene #1348: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DLGAP5 MUTATED 1 3 2 0 2
DLGAP5 WILD-TYPE 50 73 59 71 93
'DLGAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S13699.  Gene #1348: 'DLGAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DLGAP5 MUTATED 1 2 2 0 1 0 0 1 1
DLGAP5 WILD-TYPE 68 46 37 16 52 20 21 37 49
'ACCN5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0523 (Fisher's exact test), Q value = 0.24

Table S13700.  Gene #1349: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ACCN5 MUTATED 1 0 0 3 0
ACCN5 WILD-TYPE 31 18 46 24 23
'ACCN5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13701.  Gene #1349: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ACCN5 MUTATED 1 2 1
ACCN5 WILD-TYPE 42 65 35
'ACCN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S13702.  Gene #1349: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ACCN5 MUTATED 0 7 6
ACCN5 WILD-TYPE 42 166 141
'ACCN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.99

Table S13703.  Gene #1349: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ACCN5 MUTATED 3 4 2
ACCN5 WILD-TYPE 59 69 73
'ACCN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0689 (Fisher's exact test), Q value = 0.28

Table S13704.  Gene #1349: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ACCN5 MUTATED 0 3 6
ACCN5 WILD-TYPE 70 117 94
'ACCN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S13705.  Gene #1349: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ACCN5 MUTATED 0 1 1 1 0 4 2 0 0
ACCN5 WILD-TYPE 41 25 29 28 39 65 18 14 22
'ACCN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.96

Table S13706.  Gene #1349: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ACCN5 MUTATED 5 1 2 5
ACCN5 WILD-TYPE 95 71 70 116
'ACCN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.81

Table S13707.  Gene #1349: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ACCN5 MUTATED 1 5 2 3 2
ACCN5 WILD-TYPE 58 70 72 116 36
'ACCN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S13708.  Gene #1349: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ACCN5 MUTATED 2 3 1 3 3
ACCN5 WILD-TYPE 49 73 60 68 92
'ACCN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S13709.  Gene #1349: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ACCN5 MUTATED 4 2 0 1 2 1 0 1 1
ACCN5 WILD-TYPE 65 46 39 15 51 19 21 37 49
'ACCN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S13710.  Gene #1349: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ACCN5 MUTATED 1 0 0 1 0 1
ACCN5 WILD-TYPE 12 16 14 10 11 8
'ACCN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S13711.  Gene #1349: 'ACCN5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ACCN5 MUTATED 0 0 0 1 0 1 1 0 0
ACCN5 WILD-TYPE 11 7 7 8 8 6 10 9 5
'DLGAP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0972 (Fisher's exact test), Q value = 0.34

Table S13712.  Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DLGAP3 MUTATED 3 0 0 1 0
DLGAP3 WILD-TYPE 29 18 46 26 23
'DLGAP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S13713.  Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DLGAP3 MUTATED 2 1 1
DLGAP3 WILD-TYPE 41 66 35
'DLGAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S13714.  Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DLGAP3 MUTATED 1 0 14
DLGAP3 WILD-TYPE 41 173 133

Figure S3526.  Get High-res Image Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DLGAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.1

Table S13715.  Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DLGAP3 MUTATED 5 0 7
DLGAP3 WILD-TYPE 57 73 68

Figure S3527.  Get High-res Image Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DLGAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0894 (Fisher's exact test), Q value = 0.32

Table S13716.  Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DLGAP3 MUTATED 0 6 6
DLGAP3 WILD-TYPE 70 114 94
'DLGAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S13717.  Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DLGAP3 MUTATED 1 2 1 3 0 4 1 0 0
DLGAP3 WILD-TYPE 40 24 29 26 39 65 19 14 22
'DLGAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00794 (Fisher's exact test), Q value = 0.084

Table S13718.  Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DLGAP3 MUTATED 0 7 4 5
DLGAP3 WILD-TYPE 100 65 68 116

Figure S3528.  Get High-res Image Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DLGAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S13719.  Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DLGAP3 MUTATED 1 1 9 3 2
DLGAP3 WILD-TYPE 58 74 65 116 36

Figure S3529.  Get High-res Image Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.095

Table S13720.  Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DLGAP3 MUTATED 0 9 2 1 3
DLGAP3 WILD-TYPE 51 67 59 70 92

Figure S3530.  Get High-res Image Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00149 (Fisher's exact test), Q value = 0.032

Table S13721.  Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DLGAP3 MUTATED 2 4 0 5 1 1 0 1 1
DLGAP3 WILD-TYPE 67 44 39 11 52 19 21 37 49

Figure S3531.  Get High-res Image Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00618 (Fisher's exact test), Q value = 0.074

Table S13722.  Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DLGAP3 MUTATED 0 0 0 0 3 0
DLGAP3 WILD-TYPE 13 16 14 11 8 9

Figure S3532.  Get High-res Image Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S13723.  Gene #1350: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DLGAP3 MUTATED 0 0 0 2 0 0 1 0 0
DLGAP3 WILD-TYPE 11 7 7 7 8 7 10 9 5
'HSPBAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S13724.  Gene #1351: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HSPBAP1 MUTATED 1 2 4
HSPBAP1 WILD-TYPE 41 171 143
'HSPBAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S13725.  Gene #1351: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HSPBAP1 MUTATED 1 1 4
HSPBAP1 WILD-TYPE 61 72 71
'HSPBAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S13726.  Gene #1351: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HSPBAP1 MUTATED 1 2 3
HSPBAP1 WILD-TYPE 69 118 97
'HSPBAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S13727.  Gene #1351: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HSPBAP1 MUTATED 1 1 0 1 0 3 0 0 0
HSPBAP1 WILD-TYPE 40 25 30 28 39 66 20 14 22
'HSPBAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S13728.  Gene #1351: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HSPBAP1 MUTATED 1 4 1 1
HSPBAP1 WILD-TYPE 99 68 71 120
'HSPBAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S13729.  Gene #1351: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HSPBAP1 MUTATED 2 0 4 0 1
HSPBAP1 WILD-TYPE 57 75 70 119 37

Figure S3533.  Get High-res Image Gene #1351: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HSPBAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S13730.  Gene #1351: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HSPBAP1 MUTATED 0 4 2 0 0
HSPBAP1 WILD-TYPE 51 72 59 71 95

Figure S3534.  Get High-res Image Gene #1351: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HSPBAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0065

Table S13731.  Gene #1351: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HSPBAP1 MUTATED 0 1 0 4 1 0 0 0 0
HSPBAP1 WILD-TYPE 69 47 39 12 52 20 21 38 50

Figure S3535.  Get High-res Image Gene #1351: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HSPBAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 0.2

Table S13732.  Gene #1351: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HSPBAP1 MUTATED 0 0 0 2 2 0
HSPBAP1 WILD-TYPE 13 16 14 9 9 9

Figure S3536.  Get High-res Image Gene #1351: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'HSPBAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S13733.  Gene #1351: 'HSPBAP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HSPBAP1 MUTATED 0 0 1 2 0 1 0 0 0
HSPBAP1 WILD-TYPE 11 7 6 7 8 6 11 9 5
'COLEC12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0572 (Fisher's exact test), Q value = 0.26

Table S13734.  Gene #1352: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
COLEC12 MUTATED 4 0 0 1 1
COLEC12 WILD-TYPE 28 18 46 26 22
'COLEC12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S13735.  Gene #1352: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
COLEC12 MUTATED 4 1 1
COLEC12 WILD-TYPE 39 66 35
'COLEC12 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.012

Table S13736.  Gene #1352: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
COLEC12 MUTATED 0 2 15
COLEC12 WILD-TYPE 42 171 132

Figure S3537.  Get High-res Image Gene #1352: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'COLEC12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S13737.  Gene #1352: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
COLEC12 MUTATED 5 2 5
COLEC12 WILD-TYPE 57 71 70
'COLEC12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00647 (Fisher's exact test), Q value = 0.075

Table S13738.  Gene #1352: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
COLEC12 MUTATED 0 3 9
COLEC12 WILD-TYPE 70 117 91

Figure S3538.  Get High-res Image Gene #1352: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'COLEC12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S13739.  Gene #1352: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
COLEC12 MUTATED 1 0 1 0 3 6 1 0 0
COLEC12 WILD-TYPE 40 26 29 29 36 63 19 14 22
'COLEC12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.6

Table S13740.  Gene #1352: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
COLEC12 MUTATED 2 6 3 6
COLEC12 WILD-TYPE 98 66 69 115
'COLEC12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 0.2

Table S13741.  Gene #1352: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
COLEC12 MUTATED 2 2 7 2 4
COLEC12 WILD-TYPE 57 73 67 117 34

Figure S3539.  Get High-res Image Gene #1352: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'COLEC12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S13742.  Gene #1352: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
COLEC12 MUTATED 1 6 2 2 6
COLEC12 WILD-TYPE 50 70 59 69 89
'COLEC12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0633 (Fisher's exact test), Q value = 0.27

Table S13743.  Gene #1352: 'COLEC12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
COLEC12 MUTATED 2 3 1 4 1 1 1 3 1
COLEC12 WILD-TYPE 67 45 38 12 52 19 20 35 49
'KIFC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S13744.  Gene #1353: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIFC2 MUTATED 0 2 4
KIFC2 WILD-TYPE 42 171 143
'KIFC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S13745.  Gene #1353: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIFC2 MUTATED 1 2 3
KIFC2 WILD-TYPE 61 71 72
'KIFC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13746.  Gene #1353: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIFC2 MUTATED 1 2 2
KIFC2 WILD-TYPE 69 118 98
'KIFC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.93

Table S13747.  Gene #1353: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIFC2 MUTATED 0 0 0 1 1 2 0 1 0
KIFC2 WILD-TYPE 41 26 30 28 38 67 20 13 22
'KIFC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S13748.  Gene #1353: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIFC2 MUTATED 2 3 1 0
KIFC2 WILD-TYPE 98 69 71 121
'KIFC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 0.22

Table S13749.  Gene #1353: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIFC2 MUTATED 0 3 3 0 0
KIFC2 WILD-TYPE 59 72 71 119 38

Figure S3540.  Get High-res Image Gene #1353: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIFC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00332 (Fisher's exact test), Q value = 0.051

Table S13750.  Gene #1353: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIFC2 MUTATED 1 5 0 0 0
KIFC2 WILD-TYPE 50 71 61 71 95

Figure S3541.  Get High-res Image Gene #1353: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIFC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.44

Table S13751.  Gene #1353: 'KIFC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIFC2 MUTATED 4 1 0 1 0 0 0 0 0
KIFC2 WILD-TYPE 65 47 39 15 53 20 21 38 50
'PPYR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 0.27

Table S13752.  Gene #1354: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PPYR1 MUTATED 1 0 4
PPYR1 WILD-TYPE 41 173 143
'PPYR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S13753.  Gene #1354: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PPYR1 MUTATED 2 1 1
PPYR1 WILD-TYPE 60 72 74
'PPYR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S13754.  Gene #1354: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PPYR1 MUTATED 0 0 4
PPYR1 WILD-TYPE 70 120 96

Figure S3542.  Get High-res Image Gene #1354: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PPYR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.74

Table S13755.  Gene #1354: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PPYR1 MUTATED 0 0 0 0 0 4 0 0 0
PPYR1 WILD-TYPE 41 26 30 29 39 65 20 14 22
'PPYR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S13756.  Gene #1354: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PPYR1 MUTATED 1 1 2 1
PPYR1 WILD-TYPE 99 71 70 120
'PPYR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S13757.  Gene #1354: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PPYR1 MUTATED 0 1 3 1 0
PPYR1 WILD-TYPE 59 74 71 118 38
'PPYR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0849 (Fisher's exact test), Q value = 0.32

Table S13758.  Gene #1354: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PPYR1 MUTATED 0 3 0 2 0
PPYR1 WILD-TYPE 51 73 61 69 95
'PPYR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S13759.  Gene #1354: 'PPYR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PPYR1 MUTATED 2 2 0 0 1 0 0 0 0
PPYR1 WILD-TYPE 67 46 39 16 52 20 21 38 50
'CASP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S13760.  Gene #1355: 'CASP10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CASP10 MUTATED 0 2 5
CASP10 WILD-TYPE 42 171 142
'CASP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S13761.  Gene #1355: 'CASP10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CASP10 MUTATED 2 1 2
CASP10 WILD-TYPE 60 72 73
'CASP10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S13762.  Gene #1355: 'CASP10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CASP10 MUTATED 0 5 2
CASP10 WILD-TYPE 70 115 98
'CASP10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S13763.  Gene #1355: 'CASP10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CASP10 MUTATED 1 1 1 1 1 1 1 0 0
CASP10 WILD-TYPE 40 25 29 28 38 68 19 14 22
'CASP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S13764.  Gene #1355: 'CASP10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CASP10 MUTATED 2 2 2 1
CASP10 WILD-TYPE 98 70 70 120
'CASP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S13765.  Gene #1355: 'CASP10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CASP10 MUTATED 2 2 1 2 0
CASP10 WILD-TYPE 57 73 73 117 38
'CASP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.97

Table S13766.  Gene #1355: 'CASP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CASP10 MUTATED 1 2 2 0 2
CASP10 WILD-TYPE 50 74 59 71 93
'CASP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00389 (Fisher's exact test), Q value = 0.056

Table S13767.  Gene #1355: 'CASP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CASP10 MUTATED 0 3 0 0 1 3 0 0 0
CASP10 WILD-TYPE 69 45 39 16 52 17 21 38 50

Figure S3543.  Get High-res Image Gene #1355: 'CASP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'STAU1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13768.  Gene #1356: 'STAU1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STAU1 MUTATED 0 4 3
STAU1 WILD-TYPE 42 169 144
'STAU1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13769.  Gene #1356: 'STAU1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STAU1 MUTATED 2 2 3
STAU1 WILD-TYPE 60 71 72
'STAU1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S13770.  Gene #1356: 'STAU1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STAU1 MUTATED 3 2 2
STAU1 WILD-TYPE 67 118 98
'STAU1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S13771.  Gene #1356: 'STAU1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STAU1 MUTATED 0 1 1 0 1 1 1 1 1
STAU1 WILD-TYPE 41 25 29 29 38 68 19 13 21
'STAU1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S13772.  Gene #1356: 'STAU1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STAU1 MUTATED 2 2 3 0
STAU1 WILD-TYPE 98 70 69 121
'STAU1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S13773.  Gene #1356: 'STAU1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STAU1 MUTATED 2 3 2 0 0
STAU1 WILD-TYPE 57 72 72 119 38
'STAU1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S13774.  Gene #1356: 'STAU1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STAU1 MUTATED 1 5 1 0 0
STAU1 WILD-TYPE 50 71 60 71 95

Figure S3544.  Get High-res Image Gene #1356: 'STAU1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'STAU1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S13775.  Gene #1356: 'STAU1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STAU1 MUTATED 2 3 0 0 1 1 0 0 0
STAU1 WILD-TYPE 67 45 39 16 52 19 21 38 50
'STAU1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S13776.  Gene #1356: 'STAU1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
STAU1 MUTATED 1 0 0 1 1 0
STAU1 WILD-TYPE 12 16 14 10 10 9
'STAU1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S13777.  Gene #1356: 'STAU1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
STAU1 MUTATED 0 0 1 0 0 0 2 0 0
STAU1 WILD-TYPE 11 7 6 9 8 7 9 9 5
'EFNB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.19

Table S13778.  Gene #1357: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EFNB3 MUTATED 3 1 4
EFNB3 WILD-TYPE 39 172 143

Figure S3545.  Get High-res Image Gene #1357: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EFNB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0831 (Fisher's exact test), Q value = 0.31

Table S13779.  Gene #1357: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EFNB3 MUTATED 1 0 4
EFNB3 WILD-TYPE 61 73 71
'EFNB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S13780.  Gene #1357: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EFNB3 MUTATED 1 4 2
EFNB3 WILD-TYPE 69 116 98
'EFNB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S13781.  Gene #1357: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EFNB3 MUTATED 0 0 1 2 1 2 1 0 0
EFNB3 WILD-TYPE 41 26 29 27 38 67 19 14 22
'EFNB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.19

Table S13782.  Gene #1357: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EFNB3 MUTATED 1 5 0 2
EFNB3 WILD-TYPE 99 67 72 119

Figure S3546.  Get High-res Image Gene #1357: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EFNB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.88

Table S13783.  Gene #1357: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EFNB3 MUTATED 0 2 3 2 1
EFNB3 WILD-TYPE 59 73 71 117 37
'EFNB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S13784.  Gene #1357: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EFNB3 MUTATED 0 3 0 2 3
EFNB3 WILD-TYPE 51 73 61 69 92
'EFNB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.81

Table S13785.  Gene #1357: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EFNB3 MUTATED 2 1 0 1 0 0 0 1 3
EFNB3 WILD-TYPE 67 47 39 15 53 20 21 37 47
'ICAM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.15

Table S13786.  Gene #1358: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ICAM5 MUTATED 1 1 8
ICAM5 WILD-TYPE 41 172 139

Figure S3547.  Get High-res Image Gene #1358: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ICAM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0484 (Fisher's exact test), Q value = 0.24

Table S13787.  Gene #1358: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ICAM5 MUTATED 1 1 7
ICAM5 WILD-TYPE 61 72 68

Figure S3548.  Get High-res Image Gene #1358: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ICAM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S13788.  Gene #1358: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ICAM5 MUTATED 3 2 4
ICAM5 WILD-TYPE 67 118 96
'ICAM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S13789.  Gene #1358: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ICAM5 MUTATED 2 1 0 1 2 3 0 0 0
ICAM5 WILD-TYPE 39 25 30 28 37 66 20 14 22
'ICAM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0072

Table S13790.  Gene #1358: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ICAM5 MUTATED 1 8 0 1
ICAM5 WILD-TYPE 99 64 72 120

Figure S3549.  Get High-res Image Gene #1358: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ICAM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00696 (Fisher's exact test), Q value = 0.078

Table S13791.  Gene #1358: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ICAM5 MUTATED 1 0 7 2 0
ICAM5 WILD-TYPE 58 75 67 117 38

Figure S3550.  Get High-res Image Gene #1358: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ICAM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0925 (Fisher's exact test), Q value = 0.33

Table S13792.  Gene #1358: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ICAM5 MUTATED 0 6 1 1 2
ICAM5 WILD-TYPE 51 70 60 70 93
'ICAM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S13793.  Gene #1358: 'ICAM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ICAM5 MUTATED 4 1 0 2 1 0 0 2 0
ICAM5 WILD-TYPE 65 47 39 14 52 20 21 36 50
'ZP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.3

Table S13794.  Gene #1359: 'ZP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZP2 MUTATED 3 0 0 2 0
ZP2 WILD-TYPE 29 18 46 25 23
'ZP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0675 (Fisher's exact test), Q value = 0.28

Table S13795.  Gene #1359: 'ZP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZP2 MUTATED 4 1 0
ZP2 WILD-TYPE 39 66 36
'ZP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S13796.  Gene #1359: 'ZP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZP2 MUTATED 1 3 8
ZP2 WILD-TYPE 41 170 139
'ZP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S13797.  Gene #1359: 'ZP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZP2 MUTATED 3 3 2
ZP2 WILD-TYPE 59 70 73
'ZP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S13798.  Gene #1359: 'ZP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZP2 MUTATED 1 5 4
ZP2 WILD-TYPE 69 115 96
'ZP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S13799.  Gene #1359: 'ZP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZP2 MUTATED 1 0 1 1 3 3 0 1 0
ZP2 WILD-TYPE 40 26 29 28 36 66 20 13 22
'ZP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S13800.  Gene #1359: 'ZP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZP2 MUTATED 4 1 2 5
ZP2 WILD-TYPE 96 71 70 116
'ZP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0373 (Fisher's exact test), Q value = 0.21

Table S13801.  Gene #1359: 'ZP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZP2 MUTATED 1 4 2 1 4
ZP2 WILD-TYPE 58 71 72 118 34

Figure S3551.  Get High-res Image Gene #1359: 'ZP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S13802.  Gene #1359: 'ZP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZP2 MUTATED 2 2 2 1 5
ZP2 WILD-TYPE 49 74 59 70 90
'ZP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S13803.  Gene #1359: 'ZP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZP2 MUTATED 1 2 1 1 2 1 0 4 0
ZP2 WILD-TYPE 68 46 38 15 51 19 21 34 50
'ZP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S13804.  Gene #1359: 'ZP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZP2 MUTATED 1 1 0 0 1 0
ZP2 WILD-TYPE 12 15 14 11 10 9
'ZP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S13805.  Gene #1359: 'ZP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZP2 MUTATED 0 1 0 2 0 0 0 0 0
ZP2 WILD-TYPE 11 6 7 7 8 7 11 9 5
'RXRA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00625 (Fisher's exact test), Q value = 0.074

Table S13806.  Gene #1360: 'RXRA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RXRA MUTATED 1 0 7
RXRA WILD-TYPE 41 173 140

Figure S3552.  Get High-res Image Gene #1360: 'RXRA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RXRA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 0.31

Table S13807.  Gene #1360: 'RXRA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RXRA MUTATED 4 0 3
RXRA WILD-TYPE 58 73 72
'RXRA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S13808.  Gene #1360: 'RXRA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RXRA MUTATED 1 1 5
RXRA WILD-TYPE 69 119 95
'RXRA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.78

Table S13809.  Gene #1360: 'RXRA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RXRA MUTATED 0 0 0 1 1 5 0 0 0
RXRA WILD-TYPE 41 26 30 28 38 64 20 14 22
'RXRA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00234 (Fisher's exact test), Q value = 0.041

Table S13810.  Gene #1360: 'RXRA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RXRA MUTATED 0 6 1 1
RXRA WILD-TYPE 100 66 71 120

Figure S3553.  Get High-res Image Gene #1360: 'RXRA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RXRA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0023 (Fisher's exact test), Q value = 0.041

Table S13811.  Gene #1360: 'RXRA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RXRA MUTATED 0 1 6 0 1
RXRA WILD-TYPE 59 74 68 119 37

Figure S3554.  Get High-res Image Gene #1360: 'RXRA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RXRA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S13812.  Gene #1360: 'RXRA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RXRA MUTATED 0 4 1 0 3
RXRA WILD-TYPE 51 72 60 71 92
'RXRA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.13

Table S13813.  Gene #1360: 'RXRA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RXRA MUTATED 1 1 0 3 0 0 0 2 1
RXRA WILD-TYPE 68 47 39 13 53 20 21 36 49

Figure S3555.  Get High-res Image Gene #1360: 'RXRA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CCT5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.48

Table S13814.  Gene #1361: 'CCT5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CCT5 MUTATED 1 0 0 2 0
CCT5 WILD-TYPE 31 18 46 25 23
'CCT5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S13815.  Gene #1361: 'CCT5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CCT5 MUTATED 1 2 0
CCT5 WILD-TYPE 42 65 36
'CCT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S13816.  Gene #1361: 'CCT5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCT5 MUTATED 0 2 6
CCT5 WILD-TYPE 42 171 141
'CCT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.93

Table S13817.  Gene #1361: 'CCT5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCT5 MUTATED 1 1 3
CCT5 WILD-TYPE 61 72 72
'CCT5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S13818.  Gene #1361: 'CCT5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCT5 MUTATED 0 3 3
CCT5 WILD-TYPE 70 117 97
'CCT5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S13819.  Gene #1361: 'CCT5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCT5 MUTATED 0 1 1 1 0 2 1 0 0
CCT5 WILD-TYPE 41 25 29 28 39 67 19 14 22
'CCT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.93

Table S13820.  Gene #1361: 'CCT5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCT5 MUTATED 1 3 1 3
CCT5 WILD-TYPE 99 69 71 118
'CCT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S13821.  Gene #1361: 'CCT5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCT5 MUTATED 0 1 4 2 1
CCT5 WILD-TYPE 59 74 70 117 37
'CCT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S13822.  Gene #1361: 'CCT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCT5 MUTATED 0 4 1 0 3
CCT5 WILD-TYPE 51 72 60 71 92
'CCT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0693 (Fisher's exact test), Q value = 0.28

Table S13823.  Gene #1361: 'CCT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCT5 MUTATED 1 2 0 1 0 2 1 1 0
CCT5 WILD-TYPE 68 46 39 15 53 18 20 37 50
'DOCK8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.97

Table S13824.  Gene #1362: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DOCK8 MUTATED 2 1 1 1 0
DOCK8 WILD-TYPE 30 17 45 26 23
'DOCK8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S13825.  Gene #1362: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DOCK8 MUTATED 2 2 1
DOCK8 WILD-TYPE 41 65 35
'DOCK8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S13826.  Gene #1362: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DOCK8 MUTATED 1 4 14
DOCK8 WILD-TYPE 41 169 133

Figure S3556.  Get High-res Image Gene #1362: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DOCK8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S13827.  Gene #1362: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DOCK8 MUTATED 7 2 6
DOCK8 WILD-TYPE 55 71 69
'DOCK8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.9

Table S13828.  Gene #1362: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DOCK8 MUTATED 3 4 6
DOCK8 WILD-TYPE 67 116 94
'DOCK8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S13829.  Gene #1362: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DOCK8 MUTATED 2 0 1 1 0 5 3 1 0
DOCK8 WILD-TYPE 39 26 29 28 39 64 17 13 22
'DOCK8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S13830.  Gene #1362: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DOCK8 MUTATED 3 5 7 5
DOCK8 WILD-TYPE 97 67 65 116
'DOCK8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0481 (Fisher's exact test), Q value = 0.24

Table S13831.  Gene #1362: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DOCK8 MUTATED 2 3 10 4 1
DOCK8 WILD-TYPE 57 72 64 115 37

Figure S3557.  Get High-res Image Gene #1362: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DOCK8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.21

Table S13832.  Gene #1362: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DOCK8 MUTATED 3 10 2 3 2
DOCK8 WILD-TYPE 48 66 59 68 93

Figure S3558.  Get High-res Image Gene #1362: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DOCK8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00846 (Fisher's exact test), Q value = 0.086

Table S13833.  Gene #1362: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DOCK8 MUTATED 4 4 0 5 2 2 1 1 1
DOCK8 WILD-TYPE 65 44 39 11 51 18 20 37 49

Figure S3559.  Get High-res Image Gene #1362: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DOCK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S13834.  Gene #1362: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DOCK8 MUTATED 1 2 1 0 4 0
DOCK8 WILD-TYPE 12 14 13 11 7 9
'DOCK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S13835.  Gene #1362: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DOCK8 MUTATED 1 1 0 2 1 0 2 0 1
DOCK8 WILD-TYPE 10 6 7 7 7 7 9 9 4
'ZNF512 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.55

Table S13836.  Gene #1363: 'ZNF512 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF512 MUTATED 1 2 0
ZNF512 WILD-TYPE 41 171 147
'ZNF512 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S13837.  Gene #1363: 'ZNF512 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF512 MUTATED 2 1 0
ZNF512 WILD-TYPE 60 72 75
'ZNF512 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S13838.  Gene #1363: 'ZNF512 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF512 MUTATED 2 1 0 0
ZNF512 WILD-TYPE 98 71 72 121
'ZNF512 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S13839.  Gene #1363: 'ZNF512 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF512 MUTATED 0 2 1 0 0
ZNF512 WILD-TYPE 59 73 73 119 38
'ZNF512 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S13840.  Gene #1363: 'ZNF512 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF512 MUTATED 0 3 0 0 0
ZNF512 WILD-TYPE 51 73 61 71 95

Figure S3560.  Get High-res Image Gene #1363: 'ZNF512 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ZNF512 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 0.96

Table S13841.  Gene #1363: 'ZNF512 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF512 MUTATED 2 0 1 0 0 0 0 0 0
ZNF512 WILD-TYPE 67 48 38 16 53 20 21 38 50
'TBCA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S13842.  Gene #1364: 'TBCA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TBCA MUTATED 0 1 3
TBCA WILD-TYPE 42 172 144
'TBCA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S13843.  Gene #1364: 'TBCA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TBCA MUTATED 1 1 2
TBCA WILD-TYPE 69 119 98
'TBCA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.99

Table S13844.  Gene #1364: 'TBCA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TBCA MUTATED 0 0 1 0 1 1 1 0 0
TBCA WILD-TYPE 41 26 29 29 38 68 19 14 22
'TBCA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.56

Table S13845.  Gene #1364: 'TBCA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TBCA MUTATED 0 0 2 2
TBCA WILD-TYPE 100 72 70 119
'TBCA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S13846.  Gene #1364: 'TBCA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TBCA MUTATED 1 0 1 1 1
TBCA WILD-TYPE 58 75 73 118 37
'TBCA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S13847.  Gene #1364: 'TBCA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TBCA MUTATED 0 2 0 0 2
TBCA WILD-TYPE 51 74 61 71 93
'TBCA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S13848.  Gene #1364: 'TBCA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TBCA MUTATED 1 1 0 0 0 1 0 1 0
TBCA WILD-TYPE 68 47 39 16 53 19 21 37 50
'EPHA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00925 (Fisher's exact test), Q value = 0.09

Table S13849.  Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EPHA2 MUTATED 4 0 0 0 0
EPHA2 WILD-TYPE 28 18 46 27 23

Figure S3561.  Get High-res Image Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EPHA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00998 (Fisher's exact test), Q value = 0.094

Table S13850.  Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EPHA2 MUTATED 4 0 0
EPHA2 WILD-TYPE 39 67 36

Figure S3562.  Get High-res Image Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00145 (Fisher's exact test), Q value = 0.032

Table S13851.  Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EPHA2 MUTATED 2 0 9
EPHA2 WILD-TYPE 40 173 138

Figure S3563.  Get High-res Image Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EPHA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S13852.  Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EPHA2 MUTATED 3 0 4
EPHA2 WILD-TYPE 59 73 71
'EPHA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.48

Table S13853.  Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EPHA2 MUTATED 0 4 5
EPHA2 WILD-TYPE 70 116 95
'EPHA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.9

Table S13854.  Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EPHA2 MUTATED 0 1 0 2 1 4 1 0 0
EPHA2 WILD-TYPE 41 25 30 27 38 65 19 14 22
'EPHA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0497 (Fisher's exact test), Q value = 0.24

Table S13855.  Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EPHA2 MUTATED 0 5 2 4
EPHA2 WILD-TYPE 100 67 70 117

Figure S3564.  Get High-res Image Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EPHA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00387 (Fisher's exact test), Q value = 0.056

Table S13856.  Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EPHA2 MUTATED 0 0 6 2 3
EPHA2 WILD-TYPE 59 75 68 117 35

Figure S3565.  Get High-res Image Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0399 (Fisher's exact test), Q value = 0.21

Table S13857.  Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EPHA2 MUTATED 0 6 0 1 3
EPHA2 WILD-TYPE 51 70 61 70 92

Figure S3566.  Get High-res Image Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S13858.  Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EPHA2 MUTATED 1 1 0 4 0 0 0 4 0
EPHA2 WILD-TYPE 68 47 39 12 53 20 21 34 50

Figure S3567.  Get High-res Image Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S13859.  Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EPHA2 MUTATED 1 0 0 0 2 0
EPHA2 WILD-TYPE 12 16 14 11 9 9
'EPHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S13860.  Gene #1365: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EPHA2 MUTATED 0 0 0 2 0 1 0 0 0
EPHA2 WILD-TYPE 11 7 7 7 8 6 11 9 5
'OR6K2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S13861.  Gene #1366: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OR6K2 MUTATED 2 0 1 1 0
OR6K2 WILD-TYPE 30 18 45 26 23
'OR6K2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S13862.  Gene #1366: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OR6K2 MUTATED 3 1 0
OR6K2 WILD-TYPE 40 66 36
'OR6K2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00156 (Fisher's exact test), Q value = 0.033

Table S13863.  Gene #1366: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR6K2 MUTATED 1 1 12
OR6K2 WILD-TYPE 41 172 135

Figure S3568.  Get High-res Image Gene #1366: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OR6K2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.15

Table S13864.  Gene #1366: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR6K2 MUTATED 4 0 7
OR6K2 WILD-TYPE 58 73 68

Figure S3569.  Get High-res Image Gene #1366: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'OR6K2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S13865.  Gene #1366: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR6K2 MUTATED 1 5 7
OR6K2 WILD-TYPE 69 115 93
'OR6K2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 0.99

Table S13866.  Gene #1366: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR6K2 MUTATED 1 1 1 1 1 7 1 0 0
OR6K2 WILD-TYPE 40 25 29 28 38 62 19 14 22
'OR6K2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00207 (Fisher's exact test), Q value = 0.039

Table S13867.  Gene #1366: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR6K2 MUTATED 0 8 2 4
OR6K2 WILD-TYPE 100 64 70 117

Figure S3570.  Get High-res Image Gene #1366: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR6K2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00137 (Fisher's exact test), Q value = 0.03

Table S13868.  Gene #1366: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR6K2 MUTATED 0 2 8 1 3
OR6K2 WILD-TYPE 59 73 66 118 35

Figure S3571.  Get High-res Image Gene #1366: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR6K2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00374 (Fisher's exact test), Q value = 0.055

Table S13869.  Gene #1366: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR6K2 MUTATED 1 8 0 0 4
OR6K2 WILD-TYPE 50 68 61 71 91

Figure S3572.  Get High-res Image Gene #1366: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR6K2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.98

Table S13870.  Gene #1366: 'OR6K2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR6K2 MUTATED 3 2 1 2 1 1 0 2 1
OR6K2 WILD-TYPE 66 46 38 14 52 19 21 36 49
'CTR9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0972 (Fisher's exact test), Q value = 0.34

Table S13871.  Gene #1367: 'CTR9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CTR9 MUTATED 1 0 0 3 1
CTR9 WILD-TYPE 31 18 46 24 22
'CTR9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S13872.  Gene #1367: 'CTR9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CTR9 MUTATED 3 1 1
CTR9 WILD-TYPE 40 66 35
'CTR9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.21

Table S13873.  Gene #1367: 'CTR9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CTR9 MUTATED 1 4 12
CTR9 WILD-TYPE 41 169 135

Figure S3573.  Get High-res Image Gene #1367: 'CTR9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTR9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0856 (Fisher's exact test), Q value = 0.32

Table S13874.  Gene #1367: 'CTR9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CTR9 MUTATED 6 1 5
CTR9 WILD-TYPE 56 72 70
'CTR9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.21

Table S13875.  Gene #1367: 'CTR9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CTR9 MUTATED 0 7 8
CTR9 WILD-TYPE 70 113 92

Figure S3574.  Get High-res Image Gene #1367: 'CTR9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CTR9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.9

Table S13876.  Gene #1367: 'CTR9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CTR9 MUTATED 2 0 1 3 2 6 0 1 0
CTR9 WILD-TYPE 39 26 29 26 37 63 20 13 22
'CTR9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S13877.  Gene #1367: 'CTR9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CTR9 MUTATED 2 4 6 5
CTR9 WILD-TYPE 98 68 66 116
'CTR9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.47

Table S13878.  Gene #1367: 'CTR9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CTR9 MUTATED 3 3 6 2 3
CTR9 WILD-TYPE 56 72 68 117 35
'CTR9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.97

Table S13879.  Gene #1367: 'CTR9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CTR9 MUTATED 2 6 2 2 4
CTR9 WILD-TYPE 49 70 59 69 91
'CTR9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S13880.  Gene #1367: 'CTR9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CTR9 MUTATED 4 5 0 1 0 2 0 2 2
CTR9 WILD-TYPE 65 43 39 15 53 18 21 36 48
'CTR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S13881.  Gene #1367: 'CTR9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CTR9 MUTATED 1 1 1 0 2 0
CTR9 WILD-TYPE 12 15 13 11 9 9
'CTR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S13882.  Gene #1367: 'CTR9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CTR9 MUTATED 0 0 1 1 0 0 3 0 0
CTR9 WILD-TYPE 11 7 6 8 8 7 8 9 5
'RWDD4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S13883.  Gene #1368: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RWDD4A MUTATED 0 2 3
RWDD4A WILD-TYPE 42 171 144
'RWDD4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.73

Table S13884.  Gene #1368: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RWDD4A MUTATED 2 2 0
RWDD4A WILD-TYPE 60 71 75
'RWDD4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13885.  Gene #1368: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RWDD4A MUTATED 1 2 1
RWDD4A WILD-TYPE 69 118 99
'RWDD4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S13886.  Gene #1368: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RWDD4A MUTATED 0 2 0 0 0 1 1 0 0
RWDD4A WILD-TYPE 41 24 30 29 39 68 19 14 22
'RWDD4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.64

Table S13887.  Gene #1368: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RWDD4A MUTATED 3 0 0 2
RWDD4A WILD-TYPE 97 72 72 119
'RWDD4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.97

Table S13888.  Gene #1368: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RWDD4A MUTATED 1 2 0 2 0
RWDD4A WILD-TYPE 58 73 74 117 38
'RWDD4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S13889.  Gene #1368: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RWDD4A MUTATED 0 1 0 2 2
RWDD4A WILD-TYPE 51 75 61 69 93
'RWDD4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.89

Table S13890.  Gene #1368: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RWDD4A MUTATED 2 0 2 0 0 0 0 0 1
RWDD4A WILD-TYPE 67 48 37 16 53 20 21 38 49
'RWDD4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S13891.  Gene #1368: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RWDD4A MUTATED 1 0 1 1 0 0
RWDD4A WILD-TYPE 12 16 13 10 11 9
'RWDD4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S13892.  Gene #1368: 'RWDD4A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RWDD4A MUTATED 0 0 0 0 1 0 1 1 0
RWDD4A WILD-TYPE 11 7 7 9 7 7 10 8 5
'STK40 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S13893.  Gene #1369: 'STK40 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
STK40 MUTATED 2 0 0 1 0
STK40 WILD-TYPE 30 18 46 26 23
'STK40 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0374 (Fisher's exact test), Q value = 0.21

Table S13894.  Gene #1369: 'STK40 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
STK40 MUTATED 3 0 0
STK40 WILD-TYPE 40 67 36

Figure S3575.  Get High-res Image Gene #1369: 'STK40 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'STK40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.083 (Fisher's exact test), Q value = 0.31

Table S13895.  Gene #1369: 'STK40 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STK40 MUTATED 0 1 6
STK40 WILD-TYPE 42 172 141
'STK40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13896.  Gene #1369: 'STK40 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STK40 MUTATED 1 1 2
STK40 WILD-TYPE 61 72 73
'STK40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S13897.  Gene #1369: 'STK40 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STK40 MUTATED 0 2 3
STK40 WILD-TYPE 70 118 97
'STK40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 0.98

Table S13898.  Gene #1369: 'STK40 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STK40 MUTATED 0 0 0 0 1 3 1 0 0
STK40 WILD-TYPE 41 26 30 29 38 66 19 14 22
'STK40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S13899.  Gene #1369: 'STK40 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STK40 MUTATED 1 3 1 2
STK40 WILD-TYPE 99 69 71 119
'STK40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S13900.  Gene #1369: 'STK40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STK40 MUTATED 0 2 2 0 3
STK40 WILD-TYPE 59 73 72 119 35

Figure S3576.  Get High-res Image Gene #1369: 'STK40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STK40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S13901.  Gene #1369: 'STK40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STK40 MUTATED 0 3 1 0 3
STK40 WILD-TYPE 51 73 60 71 92
'STK40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S13902.  Gene #1369: 'STK40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STK40 MUTATED 2 1 1 0 0 0 1 2 0
STK40 WILD-TYPE 67 47 38 16 53 20 20 36 50
'SLC44A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S13903.  Gene #1370: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC44A1 MUTATED 2 0 1 0 0
SLC44A1 WILD-TYPE 30 18 45 27 23
'SLC44A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S13904.  Gene #1370: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC44A1 MUTATED 1 1 1
SLC44A1 WILD-TYPE 42 66 35
'SLC44A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0873 (Fisher's exact test), Q value = 0.32

Table S13905.  Gene #1370: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC44A1 MUTATED 0 2 7
SLC44A1 WILD-TYPE 42 171 140
'SLC44A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S13906.  Gene #1370: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC44A1 MUTATED 3 0 3
SLC44A1 WILD-TYPE 59 73 72
'SLC44A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S13907.  Gene #1370: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC44A1 MUTATED 2 2 2
SLC44A1 WILD-TYPE 68 118 98
'SLC44A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S13908.  Gene #1370: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC44A1 MUTATED 1 0 1 1 0 1 0 2 0
SLC44A1 WILD-TYPE 40 26 29 28 39 68 20 12 22
'SLC44A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S13909.  Gene #1370: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC44A1 MUTATED 0 4 2 3
SLC44A1 WILD-TYPE 100 68 70 118
'SLC44A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S13910.  Gene #1370: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC44A1 MUTATED 1 2 3 2 1
SLC44A1 WILD-TYPE 58 73 71 117 37
'SLC44A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S13911.  Gene #1370: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC44A1 MUTATED 0 4 2 2 1
SLC44A1 WILD-TYPE 51 72 59 69 94
'SLC44A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S13912.  Gene #1370: 'SLC44A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC44A1 MUTATED 2 1 0 1 3 0 0 1 1
SLC44A1 WILD-TYPE 67 47 39 15 50 20 21 37 49
'LPIN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13913.  Gene #1371: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LPIN2 MUTATED 1 0 1 1 0
LPIN2 WILD-TYPE 31 18 45 26 23
'LPIN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S13914.  Gene #1371: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LPIN2 MUTATED 0 2 1
LPIN2 WILD-TYPE 43 65 35
'LPIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S13915.  Gene #1371: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LPIN2 MUTATED 0 3 6
LPIN2 WILD-TYPE 42 170 141
'LPIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S13916.  Gene #1371: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LPIN2 MUTATED 4 1 1
LPIN2 WILD-TYPE 58 72 74
'LPIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S13917.  Gene #1371: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LPIN2 MUTATED 0 2 5
LPIN2 WILD-TYPE 70 118 95
'LPIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S13918.  Gene #1371: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LPIN2 MUTATED 1 0 2 0 0 4 0 0 0
LPIN2 WILD-TYPE 40 26 28 29 39 65 20 14 22
'LPIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S13919.  Gene #1371: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LPIN2 MUTATED 2 3 2 2
LPIN2 WILD-TYPE 98 69 70 119
'LPIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S13920.  Gene #1371: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LPIN2 MUTATED 1 2 3 3 0
LPIN2 WILD-TYPE 58 73 71 116 38
'LPIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S13921.  Gene #1371: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LPIN2 MUTATED 0 3 2 2 2
LPIN2 WILD-TYPE 51 73 59 69 93
'LPIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S13922.  Gene #1371: 'LPIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LPIN2 MUTATED 2 2 1 0 2 1 0 0 1
LPIN2 WILD-TYPE 67 46 38 16 51 19 21 38 49
'BLM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S13923.  Gene #1372: 'BLM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BLM MUTATED 4 0 1 2 0
BLM WILD-TYPE 28 18 45 25 23
'BLM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0341 (Fisher's exact test), Q value = 0.2

Table S13924.  Gene #1372: 'BLM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BLM MUTATED 5 2 0
BLM WILD-TYPE 38 65 36

Figure S3577.  Get High-res Image Gene #1372: 'BLM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BLM MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S13925.  Gene #1372: 'BLM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BLM MUTATED 1 1 15
BLM WILD-TYPE 41 172 132

Figure S3578.  Get High-res Image Gene #1372: 'BLM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BLM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S13926.  Gene #1372: 'BLM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BLM MUTATED 4 2 4
BLM WILD-TYPE 58 71 71
'BLM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S13927.  Gene #1372: 'BLM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BLM MUTATED 1 4 8
BLM WILD-TYPE 69 116 92
'BLM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S13928.  Gene #1372: 'BLM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BLM MUTATED 2 0 2 1 1 7 0 0 0
BLM WILD-TYPE 39 26 28 28 38 62 20 14 22
'BLM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S13929.  Gene #1372: 'BLM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BLM MUTATED 1 5 4 7
BLM WILD-TYPE 99 67 68 114
'BLM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 0.16

Table S13930.  Gene #1372: 'BLM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BLM MUTATED 2 2 6 2 5
BLM WILD-TYPE 57 73 68 117 33

Figure S3579.  Get High-res Image Gene #1372: 'BLM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BLM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S13931.  Gene #1372: 'BLM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BLM MUTATED 1 4 2 1 8
BLM WILD-TYPE 50 72 59 70 87
'BLM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0444 (Fisher's exact test), Q value = 0.22

Table S13932.  Gene #1372: 'BLM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BLM MUTATED 3 3 0 1 0 3 1 4 1
BLM WILD-TYPE 66 45 39 15 53 17 20 34 49

Figure S3580.  Get High-res Image Gene #1372: 'BLM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S13933.  Gene #1372: 'BLM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BLM MUTATED 0 1 1 1 1 0
BLM WILD-TYPE 13 15 13 10 10 9
'BLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0846 (Fisher's exact test), Q value = 0.32

Table S13934.  Gene #1372: 'BLM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BLM MUTATED 0 0 0 0 0 1 3 0 0
BLM WILD-TYPE 11 7 7 9 8 6 8 9 5
'C4ORF29 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0615 (Fisher's exact test), Q value = 0.27

Table S13935.  Gene #1373: 'C4ORF29 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C4ORF29 MUTATED 1 0 4
C4ORF29 WILD-TYPE 41 173 143
'C4ORF29 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S13936.  Gene #1373: 'C4ORF29 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C4ORF29 MUTATED 3 0 1
C4ORF29 WILD-TYPE 59 73 74
'C4ORF29 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S13937.  Gene #1373: 'C4ORF29 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C4ORF29 MUTATED 0 3 2
C4ORF29 WILD-TYPE 70 117 98
'C4ORF29 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S13938.  Gene #1373: 'C4ORF29 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C4ORF29 MUTATED 0 1 0 1 1 2 0 0 0
C4ORF29 WILD-TYPE 41 25 30 28 38 67 20 14 22
'C4ORF29 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S13939.  Gene #1373: 'C4ORF29 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C4ORF29 MUTATED 0 1 2 2
C4ORF29 WILD-TYPE 100 71 70 119
'C4ORF29 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S13940.  Gene #1373: 'C4ORF29 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C4ORF29 MUTATED 0 0 3 1 1
C4ORF29 WILD-TYPE 59 75 71 118 37
'C4ORF29 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S13941.  Gene #1373: 'C4ORF29 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C4ORF29 MUTATED 0 3 0 1 1
C4ORF29 WILD-TYPE 51 73 61 70 94
'C4ORF29 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S13942.  Gene #1373: 'C4ORF29 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C4ORF29 MUTATED 3 0 0 0 1 0 0 0 1
C4ORF29 WILD-TYPE 66 48 39 16 52 20 21 38 49
'GPR161 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S13943.  Gene #1374: 'GPR161 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GPR161 MUTATED 2 0 0 1 0
GPR161 WILD-TYPE 30 18 46 26 23
'GPR161 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S13944.  Gene #1374: 'GPR161 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GPR161 MUTATED 2 1 0
GPR161 WILD-TYPE 41 66 36
'GPR161 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00093 (Fisher's exact test), Q value = 0.024

Table S13945.  Gene #1374: 'GPR161 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GPR161 MUTATED 0 0 9
GPR161 WILD-TYPE 42 173 138

Figure S3581.  Get High-res Image Gene #1374: 'GPR161 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPR161 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S13946.  Gene #1374: 'GPR161 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GPR161 MUTATED 3 0 1
GPR161 WILD-TYPE 59 73 74
'GPR161 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S13947.  Gene #1374: 'GPR161 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GPR161 MUTATED 2 2 5
GPR161 WILD-TYPE 68 118 95
'GPR161 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 0.88

Table S13948.  Gene #1374: 'GPR161 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GPR161 MUTATED 1 0 3 0 1 3 1 0 0
GPR161 WILD-TYPE 40 26 27 29 38 66 19 14 22
'GPR161 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 0.13

Table S13949.  Gene #1374: 'GPR161 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GPR161 MUTATED 0 0 4 5
GPR161 WILD-TYPE 100 72 68 116

Figure S3582.  Get High-res Image Gene #1374: 'GPR161 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GPR161 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0886 (Fisher's exact test), Q value = 0.32

Table S13950.  Gene #1374: 'GPR161 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GPR161 MUTATED 1 0 3 2 3
GPR161 WILD-TYPE 58 75 71 117 35
'GPR161 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S13951.  Gene #1374: 'GPR161 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GPR161 MUTATED 0 2 2 0 5
GPR161 WILD-TYPE 51 74 59 71 90
'GPR161 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S13952.  Gene #1374: 'GPR161 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GPR161 MUTATED 0 3 0 1 0 1 1 3 0
GPR161 WILD-TYPE 69 45 39 15 53 19 20 35 50

Figure S3583.  Get High-res Image Gene #1374: 'GPR161 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HAUS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S13953.  Gene #1375: 'HAUS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HAUS1 MUTATED 1 1 4
HAUS1 WILD-TYPE 41 172 143
'HAUS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S13954.  Gene #1375: 'HAUS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HAUS1 MUTATED 2 2 0
HAUS1 WILD-TYPE 60 71 75
'HAUS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S13955.  Gene #1375: 'HAUS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HAUS1 MUTATED 1 2 3
HAUS1 WILD-TYPE 69 118 97
'HAUS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S13956.  Gene #1375: 'HAUS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HAUS1 MUTATED 0 0 0 0 1 3 0 2 0
HAUS1 WILD-TYPE 41 26 30 29 38 66 20 12 22
'HAUS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S13957.  Gene #1375: 'HAUS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HAUS1 MUTATED 2 1 1 2
HAUS1 WILD-TYPE 98 71 71 119
'HAUS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0972 (Fisher's exact test), Q value = 0.34

Table S13958.  Gene #1375: 'HAUS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HAUS1 MUTATED 1 2 1 0 2
HAUS1 WILD-TYPE 58 73 73 119 36
'HAUS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 0.93

Table S13959.  Gene #1375: 'HAUS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HAUS1 MUTATED 1 1 2 0 1
HAUS1 WILD-TYPE 50 75 59 71 94
'HAUS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S13960.  Gene #1375: 'HAUS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HAUS1 MUTATED 1 0 1 0 2 0 0 1 0
HAUS1 WILD-TYPE 68 48 38 16 51 20 21 37 50
'BTBD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0976 (Fisher's exact test), Q value = 0.34

Table S13961.  Gene #1376: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BTBD3 MUTATED 1 3 9
BTBD3 WILD-TYPE 41 170 138
'BTBD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S13962.  Gene #1376: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BTBD3 MUTATED 4 2 5
BTBD3 WILD-TYPE 58 71 70
'BTBD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S13963.  Gene #1376: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BTBD3 MUTATED 1 3 7
BTBD3 WILD-TYPE 69 117 93
'BTBD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S13964.  Gene #1376: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BTBD3 MUTATED 0 0 1 2 0 5 2 1 0
BTBD3 WILD-TYPE 41 26 29 27 39 64 18 13 22
'BTBD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.6

Table S13965.  Gene #1376: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BTBD3 MUTATED 3 5 3 2
BTBD3 WILD-TYPE 97 67 69 119
'BTBD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00164 (Fisher's exact test), Q value = 0.034

Table S13966.  Gene #1376: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BTBD3 MUTATED 0 5 6 0 2
BTBD3 WILD-TYPE 59 70 68 119 36

Figure S3584.  Get High-res Image Gene #1376: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BTBD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00219 (Fisher's exact test), Q value = 0.04

Table S13967.  Gene #1376: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BTBD3 MUTATED 2 8 0 0 2
BTBD3 WILD-TYPE 49 68 61 71 93

Figure S3585.  Get High-res Image Gene #1376: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BTBD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S13968.  Gene #1376: 'BTBD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BTBD3 MUTATED 2 2 1 3 1 1 0 1 1
BTBD3 WILD-TYPE 67 46 38 13 52 19 21 37 49
'KLKB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S13969.  Gene #1377: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KLKB1 MUTATED 4 0 0 1 0
KLKB1 WILD-TYPE 28 18 46 26 23

Figure S3586.  Get High-res Image Gene #1377: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KLKB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00275 (Fisher's exact test), Q value = 0.045

Table S13970.  Gene #1377: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KLKB1 MUTATED 5 0 0
KLKB1 WILD-TYPE 38 67 36

Figure S3587.  Get High-res Image Gene #1377: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KLKB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.018

Table S13971.  Gene #1377: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KLKB1 MUTATED 0 1 12
KLKB1 WILD-TYPE 42 172 135

Figure S3588.  Get High-res Image Gene #1377: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KLKB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S13972.  Gene #1377: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KLKB1 MUTATED 2 1 5
KLKB1 WILD-TYPE 60 72 70
'KLKB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S13973.  Gene #1377: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KLKB1 MUTATED 2 4 7
KLKB1 WILD-TYPE 68 116 93
'KLKB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S13974.  Gene #1377: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KLKB1 MUTATED 2 0 0 3 0 6 2 0 0
KLKB1 WILD-TYPE 39 26 30 26 39 63 18 14 22
'KLKB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0977 (Fisher's exact test), Q value = 0.34

Table S13975.  Gene #1377: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KLKB1 MUTATED 1 6 2 4
KLKB1 WILD-TYPE 99 66 70 117
'KLKB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S13976.  Gene #1377: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KLKB1 MUTATED 0 1 7 0 5
KLKB1 WILD-TYPE 59 74 67 119 33

Figure S3589.  Get High-res Image Gene #1377: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KLKB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00099 (Fisher's exact test), Q value = 0.025

Table S13977.  Gene #1377: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KLKB1 MUTATED 0 8 0 0 4
KLKB1 WILD-TYPE 51 68 61 71 91

Figure S3590.  Get High-res Image Gene #1377: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KLKB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00051 (Fisher's exact test), Q value = 0.016

Table S13978.  Gene #1377: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KLKB1 MUTATED 1 2 1 4 0 0 0 4 0
KLKB1 WILD-TYPE 68 46 38 12 53 20 21 34 50

Figure S3591.  Get High-res Image Gene #1377: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SENP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.27

Table S13979.  Gene #1378: 'SENP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SENP8 MUTATED 0 0 4
SENP8 WILD-TYPE 42 173 143
'SENP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S13980.  Gene #1378: 'SENP8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SENP8 MUTATED 2 0 2
SENP8 WILD-TYPE 60 73 73
'SENP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S13981.  Gene #1378: 'SENP8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SENP8 MUTATED 0 1 3
SENP8 WILD-TYPE 70 119 97
'SENP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.95

Table S13982.  Gene #1378: 'SENP8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SENP8 MUTATED 0 0 0 1 0 3 0 0 0
SENP8 WILD-TYPE 41 26 30 28 39 66 20 14 22
'SENP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0449 (Fisher's exact test), Q value = 0.23

Table S13983.  Gene #1378: 'SENP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SENP8 MUTATED 0 2 2 0
SENP8 WILD-TYPE 100 70 70 121

Figure S3592.  Get High-res Image Gene #1378: 'SENP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SENP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0856 (Fisher's exact test), Q value = 0.32

Table S13984.  Gene #1378: 'SENP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SENP8 MUTATED 0 1 3 0 0
SENP8 WILD-TYPE 59 74 71 119 38
'SENP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00673 (Fisher's exact test), Q value = 0.077

Table S13985.  Gene #1378: 'SENP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SENP8 MUTATED 0 4 0 0 0
SENP8 WILD-TYPE 51 72 61 71 95

Figure S3593.  Get High-res Image Gene #1378: 'SENP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SENP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.94

Table S13986.  Gene #1378: 'SENP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SENP8 MUTATED 1 1 0 1 1 0 0 0 0
SENP8 WILD-TYPE 68 47 39 15 52 20 21 38 50
'DPP8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S13987.  Gene #1379: 'DPP8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DPP8 MUTATED 4 0 0 2 0
DPP8 WILD-TYPE 28 18 46 25 23

Figure S3594.  Get High-res Image Gene #1379: 'DPP8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DPP8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.36

Table S13988.  Gene #1379: 'DPP8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DPP8 MUTATED 4 1 1
DPP8 WILD-TYPE 39 66 35
'DPP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.16

Table S13989.  Gene #1379: 'DPP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DPP8 MUTATED 1 2 10
DPP8 WILD-TYPE 41 171 137

Figure S3595.  Get High-res Image Gene #1379: 'DPP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DPP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S13990.  Gene #1379: 'DPP8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DPP8 MUTATED 3 0 2
DPP8 WILD-TYPE 59 73 73
'DPP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S13991.  Gene #1379: 'DPP8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DPP8 MUTATED 2 6 2
DPP8 WILD-TYPE 68 114 98
'DPP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S13992.  Gene #1379: 'DPP8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DPP8 MUTATED 1 2 2 1 2 0 2 0 0
DPP8 WILD-TYPE 40 24 28 28 37 69 18 14 22
'DPP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S13993.  Gene #1379: 'DPP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DPP8 MUTATED 1 2 2 8
DPP8 WILD-TYPE 99 70 70 113
'DPP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S13994.  Gene #1379: 'DPP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DPP8 MUTATED 0 0 4 5 4
DPP8 WILD-TYPE 59 75 70 114 34

Figure S3596.  Get High-res Image Gene #1379: 'DPP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DPP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S13995.  Gene #1379: 'DPP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DPP8 MUTATED 0 4 0 3 6
DPP8 WILD-TYPE 51 72 61 68 89
'DPP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S13996.  Gene #1379: 'DPP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DPP8 MUTATED 0 2 1 1 1 2 1 3 2
DPP8 WILD-TYPE 69 46 38 15 52 18 20 35 48
'SLC22A10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S13997.  Gene #1380: 'SLC22A10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC22A10 MUTATED 2 1 0 1 0
SLC22A10 WILD-TYPE 30 17 46 26 23
'SLC22A10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S13998.  Gene #1380: 'SLC22A10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC22A10 MUTATED 2 1 1
SLC22A10 WILD-TYPE 41 66 35
'SLC22A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S13999.  Gene #1380: 'SLC22A10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC22A10 MUTATED 4 0 11
SLC22A10 WILD-TYPE 38 173 136

Figure S3597.  Get High-res Image Gene #1380: 'SLC22A10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC22A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S14000.  Gene #1380: 'SLC22A10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC22A10 MUTATED 5 2 4
SLC22A10 WILD-TYPE 57 71 71
'SLC22A10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S14001.  Gene #1380: 'SLC22A10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC22A10 MUTATED 3 3 7
SLC22A10 WILD-TYPE 67 117 93
'SLC22A10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S14002.  Gene #1380: 'SLC22A10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC22A10 MUTATED 2 1 1 0 1 5 1 1 1
SLC22A10 WILD-TYPE 39 25 29 29 38 64 19 13 21
'SLC22A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.32

Table S14003.  Gene #1380: 'SLC22A10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC22A10 MUTATED 1 4 6 4
SLC22A10 WILD-TYPE 99 68 66 117
'SLC22A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0591 (Fisher's exact test), Q value = 0.26

Table S14004.  Gene #1380: 'SLC22A10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC22A10 MUTATED 3 1 7 2 2
SLC22A10 WILD-TYPE 56 74 67 117 36
'SLC22A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S14005.  Gene #1380: 'SLC22A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC22A10 MUTATED 1 6 3 1 4
SLC22A10 WILD-TYPE 50 70 58 70 91
'SLC22A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S14006.  Gene #1380: 'SLC22A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC22A10 MUTATED 2 4 1 2 2 1 1 2 0
SLC22A10 WILD-TYPE 67 44 38 14 51 19 20 36 50
'SLC22A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.52

Table S14007.  Gene #1380: 'SLC22A10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLC22A10 MUTATED 0 1 0 0 2 0
SLC22A10 WILD-TYPE 13 15 14 11 9 9
'SLC22A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S14008.  Gene #1380: 'SLC22A10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLC22A10 MUTATED 1 0 0 2 0 0 0 0 0
SLC22A10 WILD-TYPE 10 7 7 7 8 7 11 9 5
'FANCD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 0.24

Table S14009.  Gene #1381: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FANCD2 MUTATED 5 0 1 1 0
FANCD2 WILD-TYPE 27 18 45 26 23
'FANCD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0431 (Fisher's exact test), Q value = 0.22

Table S14010.  Gene #1381: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FANCD2 MUTATED 5 1 1
FANCD2 WILD-TYPE 38 66 35

Figure S3598.  Get High-res Image Gene #1381: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FANCD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0058 (Fisher's exact test), Q value = 0.072

Table S14011.  Gene #1381: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FANCD2 MUTATED 1 2 12
FANCD2 WILD-TYPE 41 171 135

Figure S3599.  Get High-res Image Gene #1381: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FANCD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.53

Table S14012.  Gene #1381: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FANCD2 MUTATED 2 1 5
FANCD2 WILD-TYPE 60 72 70
'FANCD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.65

Table S14013.  Gene #1381: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FANCD2 MUTATED 1 4 6
FANCD2 WILD-TYPE 69 116 94
'FANCD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S14014.  Gene #1381: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FANCD2 MUTATED 2 0 1 3 3 2 0 0 0
FANCD2 WILD-TYPE 39 26 29 26 36 67 20 14 22
'FANCD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S14015.  Gene #1381: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FANCD2 MUTATED 2 5 2 6
FANCD2 WILD-TYPE 98 67 70 115
'FANCD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00081 (Fisher's exact test), Q value = 0.022

Table S14016.  Gene #1381: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FANCD2 MUTATED 0 1 7 2 5
FANCD2 WILD-TYPE 59 74 67 117 33

Figure S3600.  Get High-res Image Gene #1381: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FANCD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.96

Table S14017.  Gene #1381: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FANCD2 MUTATED 1 5 1 3 4
FANCD2 WILD-TYPE 50 71 60 68 91
'FANCD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.18

Table S14018.  Gene #1381: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FANCD2 MUTATED 3 0 0 3 4 0 0 3 1
FANCD2 WILD-TYPE 66 48 39 13 49 20 21 35 49

Figure S3601.  Get High-res Image Gene #1381: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FANCD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S14019.  Gene #1381: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FANCD2 MUTATED 0 1 2 0 0 0
FANCD2 WILD-TYPE 13 15 12 11 11 9
'FANCD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S14020.  Gene #1381: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FANCD2 MUTATED 1 0 0 0 2 0 0 0 0
FANCD2 WILD-TYPE 10 7 7 9 6 7 11 9 5
'CDS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0995 (Fisher's exact test), Q value = 0.34

Table S14021.  Gene #1382: 'CDS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CDS2 MUTATED 3 0 0 1 0
CDS2 WILD-TYPE 29 18 46 26 23
'CDS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S14022.  Gene #1382: 'CDS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CDS2 MUTATED 3 1 0
CDS2 WILD-TYPE 40 66 36
'CDS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.14

Table S14023.  Gene #1382: 'CDS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CDS2 MUTATED 0 1 8
CDS2 WILD-TYPE 42 172 139

Figure S3602.  Get High-res Image Gene #1382: 'CDS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S14024.  Gene #1382: 'CDS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CDS2 MUTATED 1 1 3
CDS2 WILD-TYPE 61 72 72
'CDS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.89

Table S14025.  Gene #1382: 'CDS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CDS2 MUTATED 1 5 3
CDS2 WILD-TYPE 69 115 97
'CDS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S14026.  Gene #1382: 'CDS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CDS2 MUTATED 1 0 1 2 2 1 1 0 1
CDS2 WILD-TYPE 40 26 29 27 37 68 19 14 21
'CDS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.63

Table S14027.  Gene #1382: 'CDS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CDS2 MUTATED 1 4 1 3
CDS2 WILD-TYPE 99 68 71 118
'CDS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0198 (Fisher's exact test), Q value = 0.14

Table S14028.  Gene #1382: 'CDS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CDS2 MUTATED 1 0 4 1 3
CDS2 WILD-TYPE 58 75 70 118 35

Figure S3603.  Get High-res Image Gene #1382: 'CDS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S14029.  Gene #1382: 'CDS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CDS2 MUTATED 0 3 1 0 5
CDS2 WILD-TYPE 51 73 60 71 90
'CDS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S14030.  Gene #1382: 'CDS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CDS2 MUTATED 1 2 0 1 0 1 0 4 0
CDS2 WILD-TYPE 68 46 39 15 53 19 21 34 50

Figure S3604.  Get High-res Image Gene #1382: 'CDS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CCDC66 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00258 (Fisher's exact test), Q value = 0.043

Table S14031.  Gene #1383: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCDC66 MUTATED 0 0 8
CCDC66 WILD-TYPE 42 173 139

Figure S3605.  Get High-res Image Gene #1383: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC66 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S14032.  Gene #1383: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCDC66 MUTATED 3 0 4
CCDC66 WILD-TYPE 59 73 71
'CCDC66 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S14033.  Gene #1383: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCDC66 MUTATED 2 1 3
CCDC66 WILD-TYPE 68 119 97
'CCDC66 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.75

Table S14034.  Gene #1383: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCDC66 MUTATED 1 0 0 1 0 2 2 0 0
CCDC66 WILD-TYPE 40 26 30 28 39 67 18 14 22
'CCDC66 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.35

Table S14035.  Gene #1383: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCDC66 MUTATED 1 3 4 1
CCDC66 WILD-TYPE 99 69 68 120
'CCDC66 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00693 (Fisher's exact test), Q value = 0.078

Table S14036.  Gene #1383: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCDC66 MUTATED 1 1 6 0 1
CCDC66 WILD-TYPE 58 74 68 119 37

Figure S3606.  Get High-res Image Gene #1383: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC66 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 0.31

Table S14037.  Gene #1383: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCDC66 MUTATED 0 5 2 0 2
CCDC66 WILD-TYPE 51 71 59 71 93
'CCDC66 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S14038.  Gene #1383: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCDC66 MUTATED 1 2 0 3 2 0 1 0 0
CCDC66 WILD-TYPE 68 46 39 13 51 20 20 38 50

Figure S3607.  Get High-res Image Gene #1383: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CCDC66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S14039.  Gene #1383: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CCDC66 MUTATED 0 0 1 0 2 0
CCDC66 WILD-TYPE 13 16 13 11 9 9
'CCDC66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S14040.  Gene #1383: 'CCDC66 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CCDC66 MUTATED 0 0 0 0 2 0 1 0 0
CCDC66 WILD-TYPE 11 7 7 9 6 7 10 9 5
'TTC13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S14041.  Gene #1384: 'TTC13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TTC13 MUTATED 2 0 0 1 0
TTC13 WILD-TYPE 30 18 46 26 23
'TTC13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0383 (Fisher's exact test), Q value = 0.21

Table S14042.  Gene #1384: 'TTC13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TTC13 MUTATED 3 0 0
TTC13 WILD-TYPE 40 67 36

Figure S3608.  Get High-res Image Gene #1384: 'TTC13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TTC13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00449 (Fisher's exact test), Q value = 0.062

Table S14043.  Gene #1384: 'TTC13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TTC13 MUTATED 2 0 7
TTC13 WILD-TYPE 40 173 140

Figure S3609.  Get High-res Image Gene #1384: 'TTC13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TTC13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S14044.  Gene #1384: 'TTC13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TTC13 MUTATED 2 0 3
TTC13 WILD-TYPE 60 73 72
'TTC13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S14045.  Gene #1384: 'TTC13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TTC13 MUTATED 0 5 3
TTC13 WILD-TYPE 70 115 97
'TTC13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S14046.  Gene #1384: 'TTC13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TTC13 MUTATED 0 0 1 0 2 3 1 0 1
TTC13 WILD-TYPE 41 26 29 29 37 66 19 14 21
'TTC13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0875 (Fisher's exact test), Q value = 0.32

Table S14047.  Gene #1384: 'TTC13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TTC13 MUTATED 0 4 1 4
TTC13 WILD-TYPE 100 68 71 117
'TTC13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S14048.  Gene #1384: 'TTC13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TTC13 MUTATED 0 0 5 0 4
TTC13 WILD-TYPE 59 75 69 119 34

Figure S3610.  Get High-res Image Gene #1384: 'TTC13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TTC13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.92

Table S14049.  Gene #1384: 'TTC13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TTC13 MUTATED 1 3 0 1 3
TTC13 WILD-TYPE 50 73 61 70 92
'TTC13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S14050.  Gene #1384: 'TTC13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TTC13 MUTATED 2 0 0 1 2 0 0 3 0
TTC13 WILD-TYPE 67 48 39 15 51 20 21 35 50
'GLT8D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00229 (Fisher's exact test), Q value = 0.04

Table S14051.  Gene #1385: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GLT8D1 MUTATED 0 0 8
GLT8D1 WILD-TYPE 42 173 139

Figure S3611.  Get High-res Image Gene #1385: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GLT8D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S14052.  Gene #1385: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GLT8D1 MUTATED 2 0 4
GLT8D1 WILD-TYPE 60 73 71
'GLT8D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.79

Table S14053.  Gene #1385: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GLT8D1 MUTATED 1 1 3
GLT8D1 WILD-TYPE 69 119 97
'GLT8D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S14054.  Gene #1385: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GLT8D1 MUTATED 1 0 1 0 0 3 0 0 0
GLT8D1 WILD-TYPE 40 26 29 29 39 66 20 14 22
'GLT8D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S14055.  Gene #1385: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GLT8D1 MUTATED 0 3 3 2
GLT8D1 WILD-TYPE 100 69 69 119
'GLT8D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S14056.  Gene #1385: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GLT8D1 MUTATED 0 2 4 2 0
GLT8D1 WILD-TYPE 59 73 70 117 38
'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.99

Table S14057.  Gene #1385: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GLT8D1 MUTATED 0 3 2 1 2
GLT8D1 WILD-TYPE 51 73 59 70 93
'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S14058.  Gene #1385: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GLT8D1 MUTATED 0 3 0 1 2 1 0 0 1
GLT8D1 WILD-TYPE 69 45 39 15 51 19 21 38 49
'UBC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S14059.  Gene #1386: 'UBC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UBC MUTATED 0 3 1
UBC WILD-TYPE 42 170 146
'UBC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.73

Table S14060.  Gene #1386: 'UBC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UBC MUTATED 2 2 0
UBC WILD-TYPE 60 71 75
'UBC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.98

Table S14061.  Gene #1386: 'UBC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UBC MUTATED 0 2 2
UBC WILD-TYPE 70 118 98
'UBC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.15

Table S14062.  Gene #1386: 'UBC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UBC MUTATED 0 0 0 1 0 0 2 0 1
UBC WILD-TYPE 41 26 30 28 39 69 18 14 21

Figure S3612.  Get High-res Image Gene #1386: 'UBC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'UBC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S14063.  Gene #1386: 'UBC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UBC MUTATED 2 0 2 0
UBC WILD-TYPE 98 72 70 121
'UBC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.62

Table S14064.  Gene #1386: 'UBC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UBC MUTATED 1 2 1 0 0
UBC WILD-TYPE 58 73 73 119 38
'UBC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 0.29

Table S14065.  Gene #1386: 'UBC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UBC MUTATED 0 3 1 0 0
UBC WILD-TYPE 51 73 60 71 95
'UBC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 0.98

Table S14066.  Gene #1386: 'UBC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UBC MUTATED 1 2 1 0 0 0 0 0 0
UBC WILD-TYPE 68 46 38 16 53 20 21 38 50
'ZNF594 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.25

Table S14067.  Gene #1387: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF594 MUTATED 3 0 0 0 0
ZNF594 WILD-TYPE 29 18 46 27 23
'ZNF594 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S14068.  Gene #1387: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF594 MUTATED 2 0 1
ZNF594 WILD-TYPE 41 67 35
'ZNF594 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0453 (Fisher's exact test), Q value = 0.23

Table S14069.  Gene #1387: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF594 MUTATED 1 3 10
ZNF594 WILD-TYPE 41 170 137

Figure S3613.  Get High-res Image Gene #1387: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF594 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0453 (Fisher's exact test), Q value = 0.23

Table S14070.  Gene #1387: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF594 MUTATED 7 1 3
ZNF594 WILD-TYPE 55 72 72

Figure S3614.  Get High-res Image Gene #1387: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZNF594 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.15

Table S14071.  Gene #1387: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF594 MUTATED 2 1 8
ZNF594 WILD-TYPE 68 119 92

Figure S3615.  Get High-res Image Gene #1387: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZNF594 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S14072.  Gene #1387: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF594 MUTATED 2 0 0 0 0 5 1 2 1
ZNF594 WILD-TYPE 39 26 30 29 39 64 19 12 21
'ZNF594 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S14073.  Gene #1387: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF594 MUTATED 1 4 5 4
ZNF594 WILD-TYPE 99 68 67 117
'ZNF594 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S14074.  Gene #1387: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF594 MUTATED 3 2 5 2 2
ZNF594 WILD-TYPE 56 73 69 117 36
'ZNF594 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S14075.  Gene #1387: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF594 MUTATED 1 4 4 2 3
ZNF594 WILD-TYPE 50 72 57 69 92
'ZNF594 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0986 (Fisher's exact test), Q value = 0.34

Table S14076.  Gene #1387: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF594 MUTATED 2 4 0 3 2 0 0 2 1
ZNF594 WILD-TYPE 67 44 39 13 51 20 21 36 49
'ZNF594 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S14077.  Gene #1387: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF594 MUTATED 0 1 2 0 3 0
ZNF594 WILD-TYPE 13 15 12 11 8 9
'ZNF594 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.93

Table S14078.  Gene #1387: 'ZNF594 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF594 MUTATED 2 0 0 1 2 0 1 0 0
ZNF594 WILD-TYPE 9 7 7 8 6 7 10 9 5
'BTF3L4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S14079.  Gene #1388: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BTF3L4 MUTATED 1 1 3
BTF3L4 WILD-TYPE 41 172 144
'BTF3L4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S14080.  Gene #1388: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BTF3L4 MUTATED 3 1 1
BTF3L4 WILD-TYPE 59 72 74
'BTF3L4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S14081.  Gene #1388: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BTF3L4 MUTATED 0 1 3
BTF3L4 WILD-TYPE 70 119 97
'BTF3L4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 0.98

Table S14082.  Gene #1388: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BTF3L4 MUTATED 0 0 1 0 0 3 0 0 0
BTF3L4 WILD-TYPE 41 26 29 29 39 66 20 14 22
'BTF3L4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S14083.  Gene #1388: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BTF3L4 MUTATED 1 2 2 0
BTF3L4 WILD-TYPE 99 70 70 121
'BTF3L4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0205 (Fisher's exact test), Q value = 0.15

Table S14084.  Gene #1388: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BTF3L4 MUTATED 0 1 4 0 0
BTF3L4 WILD-TYPE 59 74 70 119 38

Figure S3616.  Get High-res Image Gene #1388: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BTF3L4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S14085.  Gene #1388: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BTF3L4 MUTATED 0 3 1 1 0
BTF3L4 WILD-TYPE 51 73 60 70 95
'BTF3L4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 0.93

Table S14086.  Gene #1388: 'BTF3L4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BTF3L4 MUTATED 2 1 0 1 1 0 0 0 0
BTF3L4 WILD-TYPE 67 47 39 15 52 20 21 38 50
'C14ORF105 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S14087.  Gene #1389: 'C14ORF105 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C14ORF105 MUTATED 0 0 3
C14ORF105 WILD-TYPE 42 173 144
'C14ORF105 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S14088.  Gene #1389: 'C14ORF105 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C14ORF105 MUTATED 0 0 1 2
C14ORF105 WILD-TYPE 100 72 71 119
'C14ORF105 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.88

Table S14089.  Gene #1389: 'C14ORF105 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C14ORF105 MUTATED 0 0 1 1 1
C14ORF105 WILD-TYPE 59 75 73 118 37
'C14ORF105 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.83

Table S14090.  Gene #1389: 'C14ORF105 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C14ORF105 MUTATED 0 0 1 0 2
C14ORF105 WILD-TYPE 51 76 60 71 93
'C14ORF105 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S14091.  Gene #1389: 'C14ORF105 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C14ORF105 MUTATED 0 1 0 0 0 1 0 1 0
C14ORF105 WILD-TYPE 69 47 39 16 53 19 21 37 50
'UBA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S14092.  Gene #1390: 'UBA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UBA3 MUTATED 1 1 4
UBA3 WILD-TYPE 41 172 143
'UBA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S14093.  Gene #1390: 'UBA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UBA3 MUTATED 3 0 2
UBA3 WILD-TYPE 59 73 73
'UBA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S14094.  Gene #1390: 'UBA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UBA3 MUTATED 0 3 2
UBA3 WILD-TYPE 70 117 98
'UBA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0779 (Fisher's exact test), Q value = 0.3

Table S14095.  Gene #1390: 'UBA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UBA3 MUTATED 0 1 0 0 2 0 1 1 0
UBA3 WILD-TYPE 41 25 30 29 37 69 19 13 22
'UBA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S14096.  Gene #1390: 'UBA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UBA3 MUTATED 0 1 2 3
UBA3 WILD-TYPE 100 71 70 118
'UBA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S14097.  Gene #1390: 'UBA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UBA3 MUTATED 2 0 1 2 1
UBA3 WILD-TYPE 57 75 73 117 37
'UBA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14098.  Gene #1390: 'UBA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UBA3 MUTATED 1 1 1 1 2
UBA3 WILD-TYPE 50 75 60 70 93
'UBA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S14099.  Gene #1390: 'UBA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UBA3 MUTATED 1 1 0 0 1 1 0 1 1
UBA3 WILD-TYPE 68 47 39 16 52 19 21 37 49
'UBE3C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S14100.  Gene #1391: 'UBE3C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
UBE3C MUTATED 2 0 0 3 1
UBE3C WILD-TYPE 30 18 46 24 22
'UBE3C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.88

Table S14101.  Gene #1391: 'UBE3C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
UBE3C MUTATED 3 2 1
UBE3C WILD-TYPE 40 65 35
'UBE3C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.46

Table S14102.  Gene #1391: 'UBE3C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UBE3C MUTATED 3 5 10
UBE3C WILD-TYPE 39 168 137
'UBE3C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.64

Table S14103.  Gene #1391: 'UBE3C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UBE3C MUTATED 6 3 3
UBE3C WILD-TYPE 56 70 72
'UBE3C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S14104.  Gene #1391: 'UBE3C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UBE3C MUTATED 2 6 8
UBE3C WILD-TYPE 68 114 92
'UBE3C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S14105.  Gene #1391: 'UBE3C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UBE3C MUTATED 3 0 3 1 1 6 0 2 0
UBE3C WILD-TYPE 38 26 27 28 38 63 20 12 22
'UBE3C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S14106.  Gene #1391: 'UBE3C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UBE3C MUTATED 6 3 4 5
UBE3C WILD-TYPE 94 69 68 116
'UBE3C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.84

Table S14107.  Gene #1391: 'UBE3C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UBE3C MUTATED 4 4 4 3 3
UBE3C WILD-TYPE 55 71 70 116 35
'UBE3C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S14108.  Gene #1391: 'UBE3C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UBE3C MUTATED 2 4 4 2 4
UBE3C WILD-TYPE 49 72 57 69 91
'UBE3C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.54

Table S14109.  Gene #1391: 'UBE3C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UBE3C MUTATED 3 6 1 0 1 2 0 2 1
UBE3C WILD-TYPE 66 42 38 16 52 18 21 36 49
'UBE3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0529 (Fisher's exact test), Q value = 0.25

Table S14110.  Gene #1391: 'UBE3C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
UBE3C MUTATED 2 4 0 0 0 0
UBE3C WILD-TYPE 11 12 14 11 11 9
'UBE3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S14111.  Gene #1391: 'UBE3C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
UBE3C MUTATED 2 1 0 0 0 0 1 1 1
UBE3C WILD-TYPE 9 6 7 9 8 7 10 8 4
'ZCWPW2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14112.  Gene #1392: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZCWPW2 MUTATED 1 0 1 1 0
ZCWPW2 WILD-TYPE 31 18 45 26 23
'ZCWPW2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S14113.  Gene #1392: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZCWPW2 MUTATED 1 2 0
ZCWPW2 WILD-TYPE 42 65 36
'ZCWPW2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.17

Table S14114.  Gene #1392: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZCWPW2 MUTATED 0 2 9
ZCWPW2 WILD-TYPE 42 171 138

Figure S3617.  Get High-res Image Gene #1392: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZCWPW2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14115.  Gene #1392: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZCWPW2 MUTATED 2 3 3
ZCWPW2 WILD-TYPE 60 70 72
'ZCWPW2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S14116.  Gene #1392: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZCWPW2 MUTATED 3 4 3
ZCWPW2 WILD-TYPE 67 116 97
'ZCWPW2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.76

Table S14117.  Gene #1392: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZCWPW2 MUTATED 0 1 1 1 2 3 0 2 0
ZCWPW2 WILD-TYPE 41 25 29 28 37 66 20 12 22
'ZCWPW2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.25

Table S14118.  Gene #1392: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZCWPW2 MUTATED 1 6 1 3
ZCWPW2 WILD-TYPE 99 66 71 118
'ZCWPW2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S14119.  Gene #1392: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZCWPW2 MUTATED 1 3 4 2 1
ZCWPW2 WILD-TYPE 58 72 70 117 37
'ZCWPW2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S14120.  Gene #1392: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZCWPW2 MUTATED 1 5 0 1 4
ZCWPW2 WILD-TYPE 50 71 61 70 91
'ZCWPW2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S14121.  Gene #1392: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZCWPW2 MUTATED 4 0 0 1 1 2 0 2 1
ZCWPW2 WILD-TYPE 65 48 39 15 52 18 21 36 49
'ZCWPW2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 0.34

Table S14122.  Gene #1392: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZCWPW2 MUTATED 0 0 0 1 2 0
ZCWPW2 WILD-TYPE 13 16 14 10 9 9
'ZCWPW2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S14123.  Gene #1392: 'ZCWPW2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZCWPW2 MUTATED 0 0 0 1 0 1 1 0 0
ZCWPW2 WILD-TYPE 11 7 7 8 8 6 10 9 5
'ZNF711 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S14124.  Gene #1393: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF711 MUTATED 1 3 6
ZNF711 WILD-TYPE 41 170 141
'ZNF711 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S14125.  Gene #1393: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF711 MUTATED 4 1 3
ZNF711 WILD-TYPE 58 72 72
'ZNF711 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.68

Table S14126.  Gene #1393: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF711 MUTATED 3 2 5
ZNF711 WILD-TYPE 67 118 95
'ZNF711 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 0.96

Table S14127.  Gene #1393: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF711 MUTATED 3 0 0 0 1 4 1 0 1
ZNF711 WILD-TYPE 38 26 30 29 38 65 19 14 21
'ZNF711 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00057 (Fisher's exact test), Q value = 0.017

Table S14128.  Gene #1393: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF711 MUTATED 0 2 7 1
ZNF711 WILD-TYPE 100 70 65 120

Figure S3618.  Get High-res Image Gene #1393: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF711 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0274 (Fisher's exact test), Q value = 0.17

Table S14129.  Gene #1393: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF711 MUTATED 3 0 5 1 1
ZNF711 WILD-TYPE 56 75 69 118 37

Figure S3619.  Get High-res Image Gene #1393: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF711 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S14130.  Gene #1393: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF711 MUTATED 1 3 4 0 1
ZNF711 WILD-TYPE 50 73 57 71 94
'ZNF711 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S14131.  Gene #1393: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF711 MUTATED 2 2 1 1 2 0 0 1 0
ZNF711 WILD-TYPE 67 46 38 15 51 20 21 37 50
'ZNF711 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S14132.  Gene #1393: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF711 MUTATED 0 1 1 0 1 0
ZNF711 WILD-TYPE 13 15 13 11 10 9
'ZNF711 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0813 (Fisher's exact test), Q value = 0.31

Table S14133.  Gene #1393: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF711 MUTATED 0 1 0 0 2 0 0 0 0
ZNF711 WILD-TYPE 11 6 7 9 6 7 11 9 5
'PRSS48 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S14134.  Gene #1394: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRSS48 MUTATED 1 1 5
PRSS48 WILD-TYPE 41 172 142
'PRSS48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S14135.  Gene #1394: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRSS48 MUTATED 3 0 3
PRSS48 WILD-TYPE 59 73 72
'PRSS48 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.56

Table S14136.  Gene #1394: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRSS48 MUTATED 3 1 2
PRSS48 WILD-TYPE 67 119 98
'PRSS48 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S14137.  Gene #1394: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRSS48 MUTATED 0 1 0 0 1 1 2 1 0
PRSS48 WILD-TYPE 41 25 30 29 38 68 18 13 22
'PRSS48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.19

Table S14138.  Gene #1394: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRSS48 MUTATED 0 2 4 1
PRSS48 WILD-TYPE 100 70 68 120

Figure S3620.  Get High-res Image Gene #1394: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PRSS48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S14139.  Gene #1394: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRSS48 MUTATED 2 1 3 1 0
PRSS48 WILD-TYPE 57 74 71 118 38
'PRSS48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.17

Table S14140.  Gene #1394: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRSS48 MUTATED 0 5 1 1 0
PRSS48 WILD-TYPE 51 71 60 70 95

Figure S3621.  Get High-res Image Gene #1394: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PRSS48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0791 (Fisher's exact test), Q value = 0.31

Table S14141.  Gene #1394: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRSS48 MUTATED 1 1 0 2 3 0 0 0 0
PRSS48 WILD-TYPE 68 47 39 14 50 20 21 38 50
'PRSS48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.096 (Fisher's exact test), Q value = 0.34

Table S14142.  Gene #1394: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PRSS48 MUTATED 0 0 0 1 2 0
PRSS48 WILD-TYPE 13 16 14 10 9 9
'PRSS48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S14143.  Gene #1394: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PRSS48 MUTATED 0 0 0 1 1 0 1 0 0
PRSS48 WILD-TYPE 11 7 7 8 7 7 10 9 5
'MMP7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S14144.  Gene #1395: 'MMP7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MMP7 MUTATED 2 0 0 1 0
MMP7 WILD-TYPE 30 18 46 26 23
'MMP7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0376 (Fisher's exact test), Q value = 0.21

Table S14145.  Gene #1395: 'MMP7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MMP7 MUTATED 3 0 0
MMP7 WILD-TYPE 40 67 36

Figure S3622.  Get High-res Image Gene #1395: 'MMP7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MMP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0591 (Fisher's exact test), Q value = 0.26

Table S14146.  Gene #1395: 'MMP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MMP7 MUTATED 2 1 5
MMP7 WILD-TYPE 40 172 142
'MMP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S14147.  Gene #1395: 'MMP7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MMP7 MUTATED 2 1 1
MMP7 WILD-TYPE 60 72 74
'MMP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S14148.  Gene #1395: 'MMP7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MMP7 MUTATED 1 3 4
MMP7 WILD-TYPE 69 117 96
'MMP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.94

Table S14149.  Gene #1395: 'MMP7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MMP7 MUTATED 0 0 1 1 1 4 0 1 0
MMP7 WILD-TYPE 41 26 29 28 38 65 20 13 22
'MMP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S14150.  Gene #1395: 'MMP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MMP7 MUTATED 1 4 0 3
MMP7 WILD-TYPE 99 68 72 118
'MMP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0334 (Fisher's exact test), Q value = 0.19

Table S14151.  Gene #1395: 'MMP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MMP7 MUTATED 1 2 2 0 3
MMP7 WILD-TYPE 58 73 72 119 35

Figure S3623.  Get High-res Image Gene #1395: 'MMP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MMP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S14152.  Gene #1395: 'MMP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MMP7 MUTATED 1 1 2 1 2
MMP7 WILD-TYPE 50 75 59 70 93
'MMP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 0.97

Table S14153.  Gene #1395: 'MMP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MMP7 MUTATED 1 0 1 1 1 1 0 1 1
MMP7 WILD-TYPE 68 48 38 15 52 19 21 37 49
'FAM120C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.55

Table S14154.  Gene #1396: 'FAM120C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM120C MUTATED 2 2 4
FAM120C WILD-TYPE 40 171 143
'FAM120C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S14155.  Gene #1396: 'FAM120C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM120C MUTATED 2 1 3
FAM120C WILD-TYPE 60 72 72
'FAM120C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.41

Table S14156.  Gene #1396: 'FAM120C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM120C MUTATED 0 5 1
FAM120C WILD-TYPE 70 115 99
'FAM120C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S14157.  Gene #1396: 'FAM120C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM120C MUTATED 0 0 0 1 1 0 1 2 1
FAM120C WILD-TYPE 41 26 30 28 38 69 19 12 21

Figure S3624.  Get High-res Image Gene #1396: 'FAM120C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'FAM120C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S14158.  Gene #1396: 'FAM120C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM120C MUTATED 3 3 0 2
FAM120C WILD-TYPE 97 69 72 119
'FAM120C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.95

Table S14159.  Gene #1396: 'FAM120C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM120C MUTATED 2 2 2 1 1
FAM120C WILD-TYPE 57 73 72 118 37
'FAM120C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.95

Table S14160.  Gene #1396: 'FAM120C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM120C MUTATED 2 3 1 1 1
FAM120C WILD-TYPE 49 73 60 70 94
'FAM120C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S14161.  Gene #1396: 'FAM120C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM120C MUTATED 1 0 2 1 3 0 0 1 0
FAM120C WILD-TYPE 68 48 37 15 50 20 21 37 50
'TMSB15B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14162.  Gene #1397: 'TMSB15B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMSB15B MUTATED 0 2 1
TMSB15B WILD-TYPE 42 171 146
'TMSB15B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S14163.  Gene #1397: 'TMSB15B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TMSB15B MUTATED 0 1 2
TMSB15B WILD-TYPE 62 72 73
'TMSB15B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S14164.  Gene #1397: 'TMSB15B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMSB15B MUTATED 2 1 0 0
TMSB15B WILD-TYPE 98 71 72 121
'TMSB15B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S14165.  Gene #1397: 'TMSB15B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMSB15B MUTATED 1 1 1 0 0
TMSB15B WILD-TYPE 58 74 73 119 38
'TMSB15B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S14166.  Gene #1397: 'TMSB15B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMSB15B MUTATED 0 1 2 0 0
TMSB15B WILD-TYPE 51 75 59 71 95
'TMSB15B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S14167.  Gene #1397: 'TMSB15B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMSB15B MUTATED 0 1 0 1 1 0 0 0 0
TMSB15B WILD-TYPE 69 47 39 15 52 20 21 38 50
'UHRF1BP1L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00262 (Fisher's exact test), Q value = 0.044

Table S14168.  Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
UHRF1BP1L MUTATED 6 0 0 2 0
UHRF1BP1L WILD-TYPE 26 18 46 25 23

Figure S3625.  Get High-res Image Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'UHRF1BP1L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00057 (Fisher's exact test), Q value = 0.017

Table S14169.  Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
UHRF1BP1L MUTATED 7 0 1
UHRF1BP1L WILD-TYPE 36 67 35

Figure S3626.  Get High-res Image Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'UHRF1BP1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.16

Table S14170.  Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UHRF1BP1L MUTATED 3 4 13
UHRF1BP1L WILD-TYPE 39 169 134

Figure S3627.  Get High-res Image Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UHRF1BP1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S14171.  Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UHRF1BP1L MUTATED 2 4 6
UHRF1BP1L WILD-TYPE 60 69 69
'UHRF1BP1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0393 (Fisher's exact test), Q value = 0.21

Table S14172.  Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UHRF1BP1L MUTATED 0 9 7
UHRF1BP1L WILD-TYPE 70 111 93

Figure S3628.  Get High-res Image Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'UHRF1BP1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S14173.  Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UHRF1BP1L MUTATED 1 1 0 3 3 5 1 2 0
UHRF1BP1L WILD-TYPE 40 25 30 26 36 64 19 12 22
'UHRF1BP1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S14174.  Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UHRF1BP1L MUTATED 4 5 3 8
UHRF1BP1L WILD-TYPE 96 67 69 113
'UHRF1BP1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00098 (Fisher's exact test), Q value = 0.025

Table S14175.  Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UHRF1BP1L MUTATED 2 4 6 1 7
UHRF1BP1L WILD-TYPE 57 71 68 118 31

Figure S3629.  Get High-res Image Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UHRF1BP1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S14176.  Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UHRF1BP1L MUTATED 4 5 2 2 6
UHRF1BP1L WILD-TYPE 47 71 59 69 89
'UHRF1BP1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0818 (Fisher's exact test), Q value = 0.31

Table S14177.  Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UHRF1BP1L MUTATED 5 1 3 2 3 0 0 5 0
UHRF1BP1L WILD-TYPE 64 47 36 14 50 20 21 33 50
'UHRF1BP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S14178.  Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
UHRF1BP1L MUTATED 0 0 2 1 2 1
UHRF1BP1L WILD-TYPE 13 16 12 10 9 8
'UHRF1BP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S14179.  Gene #1398: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
UHRF1BP1L MUTATED 2 0 0 2 0 0 2 0 0
UHRF1BP1L WILD-TYPE 9 7 7 7 8 7 9 9 5
'PLEKHH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00872 (Fisher's exact test), Q value = 0.088

Table S14180.  Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PLEKHH2 MUTATED 5 0 0 2 0
PLEKHH2 WILD-TYPE 27 18 46 25 23

Figure S3630.  Get High-res Image Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PLEKHH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.23

Table S14181.  Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PLEKHH2 MUTATED 5 1 1
PLEKHH2 WILD-TYPE 38 66 35

Figure S3631.  Get High-res Image Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PLEKHH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S14182.  Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PLEKHH2 MUTATED 0 0 18
PLEKHH2 WILD-TYPE 42 173 129

Figure S3632.  Get High-res Image Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PLEKHH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S14183.  Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PLEKHH2 MUTATED 6 0 4
PLEKHH2 WILD-TYPE 56 73 71

Figure S3633.  Get High-res Image Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PLEKHH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S14184.  Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PLEKHH2 MUTATED 3 6 7
PLEKHH2 WILD-TYPE 67 114 93
'PLEKHH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S14185.  Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PLEKHH2 MUTATED 1 1 2 1 0 6 3 2 0
PLEKHH2 WILD-TYPE 40 25 28 28 39 63 17 12 22
'PLEKHH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.17

Table S14186.  Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PLEKHH2 MUTATED 1 8 3 7
PLEKHH2 WILD-TYPE 99 64 69 114

Figure S3634.  Get High-res Image Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PLEKHH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00384 (Fisher's exact test), Q value = 0.055

Table S14187.  Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PLEKHH2 MUTATED 1 3 7 2 6
PLEKHH2 WILD-TYPE 58 72 67 117 32

Figure S3635.  Get High-res Image Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PLEKHH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 0.28

Table S14188.  Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PLEKHH2 MUTATED 0 6 3 1 8
PLEKHH2 WILD-TYPE 51 70 58 70 87
'PLEKHH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.047 (Fisher's exact test), Q value = 0.23

Table S14189.  Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PLEKHH2 MUTATED 2 3 0 3 3 1 0 5 1
PLEKHH2 WILD-TYPE 67 45 39 13 50 19 21 33 49

Figure S3636.  Get High-res Image Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PLEKHH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S14190.  Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PLEKHH2 MUTATED 0 0 1 0 2 0
PLEKHH2 WILD-TYPE 13 16 13 11 9 9
'PLEKHH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S14191.  Gene #1399: 'PLEKHH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PLEKHH2 MUTATED 0 0 0 1 1 0 1 0 0
PLEKHH2 WILD-TYPE 11 7 7 8 7 7 10 9 5
'VPRBP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14192.  Gene #1400: 'VPRBP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
VPRBP MUTATED 1 0 1 1 0
VPRBP WILD-TYPE 31 18 45 26 23
'VPRBP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S14193.  Gene #1400: 'VPRBP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
VPRBP MUTATED 0 2 1
VPRBP WILD-TYPE 43 65 35
'VPRBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S14194.  Gene #1400: 'VPRBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
VPRBP MUTATED 0 2 10
VPRBP WILD-TYPE 42 171 137

Figure S3637.  Get High-res Image Gene #1400: 'VPRBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VPRBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S14195.  Gene #1400: 'VPRBP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
VPRBP MUTATED 2 1 6
VPRBP WILD-TYPE 60 72 69
'VPRBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.61

Table S14196.  Gene #1400: 'VPRBP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
VPRBP MUTATED 1 3 6
VPRBP WILD-TYPE 69 117 94
'VPRBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S14197.  Gene #1400: 'VPRBP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
VPRBP MUTATED 1 0 1 1 0 4 1 2 0
VPRBP WILD-TYPE 40 26 29 28 39 65 19 12 22
'VPRBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S14198.  Gene #1400: 'VPRBP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
VPRBP MUTATED 1 5 3 3
VPRBP WILD-TYPE 99 67 69 118
'VPRBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0502 (Fisher's exact test), Q value = 0.24

Table S14199.  Gene #1400: 'VPRBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
VPRBP MUTATED 1 1 7 3 0
VPRBP WILD-TYPE 58 74 67 116 38
'VPRBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 0.24

Table S14200.  Gene #1400: 'VPRBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
VPRBP MUTATED 0 7 2 1 2
VPRBP WILD-TYPE 51 69 59 70 93

Figure S3638.  Get High-res Image Gene #1400: 'VPRBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'VPRBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00217 (Fisher's exact test), Q value = 0.039

Table S14201.  Gene #1400: 'VPRBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
VPRBP MUTATED 1 4 0 4 1 1 0 0 1
VPRBP WILD-TYPE 68 44 39 12 52 19 21 38 49

Figure S3639.  Get High-res Image Gene #1400: 'VPRBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'VPRBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00058 (Fisher's exact test), Q value = 0.018

Table S14202.  Gene #1400: 'VPRBP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
VPRBP MUTATED 0 0 0 0 4 0
VPRBP WILD-TYPE 13 16 14 11 7 9

Figure S3640.  Get High-res Image Gene #1400: 'VPRBP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'VPRBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.53

Table S14203.  Gene #1400: 'VPRBP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
VPRBP MUTATED 0 0 0 2 0 0 2 0 0
VPRBP WILD-TYPE 11 7 7 7 8 7 9 9 5
'ZP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14204.  Gene #1401: 'ZP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZP3 MUTATED 0 3 3
ZP3 WILD-TYPE 42 170 144
'ZP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S14205.  Gene #1401: 'ZP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZP3 MUTATED 0 1 3
ZP3 WILD-TYPE 62 72 72
'ZP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S14206.  Gene #1401: 'ZP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZP3 MUTATED 1 4 1
ZP3 WILD-TYPE 69 116 99
'ZP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S14207.  Gene #1401: 'ZP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZP3 MUTATED 1 0 2 1 0 0 1 1 0
ZP3 WILD-TYPE 40 26 28 28 39 69 19 13 22
'ZP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S14208.  Gene #1401: 'ZP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZP3 MUTATED 1 2 1 2
ZP3 WILD-TYPE 99 70 71 119
'ZP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.78

Table S14209.  Gene #1401: 'ZP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZP3 MUTATED 2 0 2 2 0
ZP3 WILD-TYPE 57 75 72 117 38
'ZP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S14210.  Gene #1401: 'ZP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZP3 MUTATED 1 2 1 1 1
ZP3 WILD-TYPE 50 74 60 70 94
'ZP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S14211.  Gene #1401: 'ZP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZP3 MUTATED 0 2 1 1 1 1 0 0 0
ZP3 WILD-TYPE 69 46 38 15 52 19 21 38 50
'OR11H12 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14212.  Gene #1402: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR11H12 MUTATED 0 2 1
OR11H12 WILD-TYPE 42 171 146
'OR11H12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14213.  Gene #1402: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR11H12 MUTATED 1 1 1
OR11H12 WILD-TYPE 61 72 74
'OR11H12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S14214.  Gene #1402: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR11H12 MUTATED 1 1 1 0
OR11H12 WILD-TYPE 99 71 71 121
'OR11H12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S14215.  Gene #1402: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR11H12 MUTATED 0 2 1 0 0
OR11H12 WILD-TYPE 59 73 73 119 38
'OR11H12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S14216.  Gene #1402: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR11H12 MUTATED 1 2 0 0 0
OR11H12 WILD-TYPE 50 74 61 71 95
'OR11H12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S14217.  Gene #1402: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR11H12 MUTATED 3 0 0 0 0 0 0 0 0
OR11H12 WILD-TYPE 66 48 39 16 53 20 21 38 50
'MMAA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S14218.  Gene #1403: 'MMAA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MMAA MUTATED 2 2 5
MMAA WILD-TYPE 40 171 142
'MMAA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S14219.  Gene #1403: 'MMAA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MMAA MUTATED 5 2 1
MMAA WILD-TYPE 57 71 74
'MMAA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S14220.  Gene #1403: 'MMAA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MMAA MUTATED 3 1 4
MMAA WILD-TYPE 67 119 96
'MMAA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.98

Table S14221.  Gene #1403: 'MMAA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MMAA MUTATED 2 0 0 0 1 2 1 1 1
MMAA WILD-TYPE 39 26 30 29 38 67 19 13 21
'MMAA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 0.24

Table S14222.  Gene #1403: 'MMAA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MMAA MUTATED 0 3 4 2
MMAA WILD-TYPE 100 69 68 119
'MMAA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.62

Table S14223.  Gene #1403: 'MMAA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MMAA MUTATED 3 1 3 1 1
MMAA WILD-TYPE 56 74 71 118 37
'MMAA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.46

Table S14224.  Gene #1403: 'MMAA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MMAA MUTATED 0 2 4 1 1
MMAA WILD-TYPE 51 74 57 70 94
'MMAA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.64

Table S14225.  Gene #1403: 'MMAA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MMAA MUTATED 2 3 0 1 0 0 0 0 2
MMAA WILD-TYPE 67 45 39 15 53 20 21 38 48
'MMAA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S14226.  Gene #1403: 'MMAA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MMAA MUTATED 0 1 1 0 0 1
MMAA WILD-TYPE 13 15 13 11 11 8
'MMAA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.99

Table S14227.  Gene #1403: 'MMAA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MMAA MUTATED 1 0 0 0 1 1 0 0 0
MMAA WILD-TYPE 10 7 7 9 7 6 11 9 5
'CALCOCO2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 0.95

Table S14228.  Gene #1404: 'CALCOCO2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CALCOCO2 MUTATED 0 3 4
CALCOCO2 WILD-TYPE 42 170 143
'CALCOCO2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S14229.  Gene #1404: 'CALCOCO2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CALCOCO2 MUTATED 1 1 3
CALCOCO2 WILD-TYPE 61 72 72
'CALCOCO2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S14230.  Gene #1404: 'CALCOCO2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CALCOCO2 MUTATED 2 2 2
CALCOCO2 WILD-TYPE 68 118 98
'CALCOCO2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S14231.  Gene #1404: 'CALCOCO2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CALCOCO2 MUTATED 3 0 0 2 1 0 0 0 0
CALCOCO2 WILD-TYPE 38 26 30 27 38 69 20 14 22
'CALCOCO2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S14232.  Gene #1404: 'CALCOCO2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CALCOCO2 MUTATED 1 2 2 2
CALCOCO2 WILD-TYPE 99 70 70 119
'CALCOCO2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.94

Table S14233.  Gene #1404: 'CALCOCO2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CALCOCO2 MUTATED 2 1 2 1 1
CALCOCO2 WILD-TYPE 57 74 72 118 37
'CALCOCO2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.88

Table S14234.  Gene #1404: 'CALCOCO2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CALCOCO2 MUTATED 1 3 1 0 2
CALCOCO2 WILD-TYPE 50 73 60 71 93
'CALCOCO2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S14235.  Gene #1404: 'CALCOCO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CALCOCO2 MUTATED 2 1 1 1 1 0 0 1 0
CALCOCO2 WILD-TYPE 67 47 38 15 52 20 21 37 50
'ZNF385B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0797 (Fisher's exact test), Q value = 0.31

Table S14236.  Gene #1405: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF385B MUTATED 0 1 6
ZNF385B WILD-TYPE 42 172 141
'ZNF385B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S14237.  Gene #1405: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF385B MUTATED 2 0 4
ZNF385B WILD-TYPE 60 73 71
'ZNF385B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S14238.  Gene #1405: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF385B MUTATED 0 3 3
ZNF385B WILD-TYPE 70 117 97
'ZNF385B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S14239.  Gene #1405: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF385B MUTATED 0 2 0 0 0 3 1 0 0
ZNF385B WILD-TYPE 41 24 30 29 39 66 19 14 22
'ZNF385B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.63

Table S14240.  Gene #1405: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF385B MUTATED 1 3 2 1
ZNF385B WILD-TYPE 99 69 70 120
'ZNF385B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S14241.  Gene #1405: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF385B MUTATED 1 3 2 1 0
ZNF385B WILD-TYPE 58 72 72 118 38
'ZNF385B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S14242.  Gene #1405: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF385B MUTATED 2 3 0 1 1
ZNF385B WILD-TYPE 49 73 61 70 94
'ZNF385B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S14243.  Gene #1405: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF385B MUTATED 2 1 1 0 1 0 0 0 2
ZNF385B WILD-TYPE 67 47 38 16 52 20 21 38 48
'SUPT3H MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.097 (Fisher's exact test), Q value = 0.34

Table S14244.  Gene #1406: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SUPT3H MUTATED 3 0 0 1 0
SUPT3H WILD-TYPE 29 18 46 26 23
'SUPT3H MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S14245.  Gene #1406: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SUPT3H MUTATED 2 1 1
SUPT3H WILD-TYPE 41 66 35
'SUPT3H MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S14246.  Gene #1406: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SUPT3H MUTATED 0 3 8
SUPT3H WILD-TYPE 42 170 139
'SUPT3H MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14247.  Gene #1406: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SUPT3H MUTATED 2 2 3
SUPT3H WILD-TYPE 60 71 72
'SUPT3H MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S14248.  Gene #1406: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SUPT3H MUTATED 0 6 3
SUPT3H WILD-TYPE 70 114 97
'SUPT3H MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S14249.  Gene #1406: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SUPT3H MUTATED 2 2 1 1 0 2 1 0 0
SUPT3H WILD-TYPE 39 24 29 28 39 67 19 14 22
'SUPT3H MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S14250.  Gene #1406: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SUPT3H MUTATED 2 2 2 5
SUPT3H WILD-TYPE 98 70 70 116
'SUPT3H MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S14251.  Gene #1406: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SUPT3H MUTATED 2 1 3 3 2
SUPT3H WILD-TYPE 57 74 71 116 36
'SUPT3H MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S14252.  Gene #1406: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SUPT3H MUTATED 2 3 1 1 4
SUPT3H WILD-TYPE 49 73 60 70 91
'SUPT3H MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S14253.  Gene #1406: 'SUPT3H MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SUPT3H MUTATED 0 3 0 1 2 2 0 2 1
SUPT3H WILD-TYPE 69 45 39 15 51 18 21 36 49
'FMO5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S14254.  Gene #1407: 'FMO5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FMO5 MUTATED 1 4 5
FMO5 WILD-TYPE 41 169 142
'FMO5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S14255.  Gene #1407: 'FMO5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FMO5 MUTATED 4 3 2
FMO5 WILD-TYPE 58 70 73
'FMO5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.8

Table S14256.  Gene #1407: 'FMO5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FMO5 MUTATED 1 3 5
FMO5 WILD-TYPE 69 117 95
'FMO5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.92

Table S14257.  Gene #1407: 'FMO5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FMO5 MUTATED 1 0 2 1 0 3 1 1 0
FMO5 WILD-TYPE 40 26 28 28 39 66 19 13 22
'FMO5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0891 (Fisher's exact test), Q value = 0.32

Table S14258.  Gene #1407: 'FMO5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FMO5 MUTATED 2 2 5 1
FMO5 WILD-TYPE 98 70 67 120
'FMO5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0672 (Fisher's exact test), Q value = 0.28

Table S14259.  Gene #1407: 'FMO5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FMO5 MUTATED 3 1 5 1 0
FMO5 WILD-TYPE 56 74 69 118 38
'FMO5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0676 (Fisher's exact test), Q value = 0.28

Table S14260.  Gene #1407: 'FMO5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FMO5 MUTATED 1 5 3 0 1
FMO5 WILD-TYPE 50 71 58 71 94
'FMO5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S14261.  Gene #1407: 'FMO5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FMO5 MUTATED 3 6 0 0 0 0 0 1 0
FMO5 WILD-TYPE 66 42 39 16 53 20 21 37 50

Figure S3641.  Get High-res Image Gene #1407: 'FMO5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FMO5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S14262.  Gene #1407: 'FMO5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FMO5 MUTATED 1 0 1 1 3 0
FMO5 WILD-TYPE 12 16 13 10 8 9
'FMO5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S14263.  Gene #1407: 'FMO5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FMO5 MUTATED 0 0 2 0 1 1 2 0 0
FMO5 WILD-TYPE 11 7 5 9 7 6 9 9 5
'CHRM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.54

Table S14264.  Gene #1408: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CHRM3 MUTATED 0 5 8
CHRM3 WILD-TYPE 42 168 139
'CHRM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S14265.  Gene #1408: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CHRM3 MUTATED 3 4 3
CHRM3 WILD-TYPE 59 69 72
'CHRM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S14266.  Gene #1408: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CHRM3 MUTATED 1 6 5
CHRM3 WILD-TYPE 69 114 95
'CHRM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.76

Table S14267.  Gene #1408: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CHRM3 MUTATED 4 0 1 1 1 2 2 1 0
CHRM3 WILD-TYPE 37 26 29 28 38 67 18 13 22
'CHRM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0718 (Fisher's exact test), Q value = 0.29

Table S14268.  Gene #1408: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CHRM3 MUTATED 1 3 6 3
CHRM3 WILD-TYPE 99 69 66 118
'CHRM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00321 (Fisher's exact test), Q value = 0.05

Table S14269.  Gene #1408: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CHRM3 MUTATED 4 1 5 0 3
CHRM3 WILD-TYPE 55 74 69 119 35

Figure S3642.  Get High-res Image Gene #1408: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHRM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.92

Table S14270.  Gene #1408: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CHRM3 MUTATED 2 4 3 1 2
CHRM3 WILD-TYPE 49 72 58 70 93
'CHRM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S14271.  Gene #1408: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CHRM3 MUTATED 2 4 1 1 1 1 0 2 0
CHRM3 WILD-TYPE 67 44 38 15 52 19 21 36 50
'CHRM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S14272.  Gene #1408: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CHRM3 MUTATED 0 0 0 1 2 1
CHRM3 WILD-TYPE 13 16 14 10 9 8
'CHRM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S14273.  Gene #1408: 'CHRM3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CHRM3 MUTATED 1 0 1 0 1 0 1 0 0
CHRM3 WILD-TYPE 10 7 6 9 7 7 10 9 5
'SYT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S14274.  Gene #1409: 'SYT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SYT2 MUTATED 1 3 4
SYT2 WILD-TYPE 41 170 143
'SYT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S14275.  Gene #1409: 'SYT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SYT2 MUTATED 1 1 4
SYT2 WILD-TYPE 61 72 71
'SYT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S14276.  Gene #1409: 'SYT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SYT2 MUTATED 0 4 3
SYT2 WILD-TYPE 70 116 97
'SYT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S14277.  Gene #1409: 'SYT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SYT2 MUTATED 0 0 1 2 0 3 0 0 1
SYT2 WILD-TYPE 41 26 29 27 39 66 20 14 21
'SYT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0794 (Fisher's exact test), Q value = 0.31

Table S14278.  Gene #1409: 'SYT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SYT2 MUTATED 0 4 1 3
SYT2 WILD-TYPE 100 68 71 118
'SYT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S14279.  Gene #1409: 'SYT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SYT2 MUTATED 0 1 4 2 1
SYT2 WILD-TYPE 59 74 70 117 37
'SYT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.25

Table S14280.  Gene #1409: 'SYT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SYT2 MUTATED 3 3 0 0 1
SYT2 WILD-TYPE 48 73 61 71 94
'SYT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S14281.  Gene #1409: 'SYT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SYT2 MUTATED 0 0 0 2 2 3 0 0 0
SYT2 WILD-TYPE 69 48 39 14 51 17 21 38 50

Figure S3643.  Get High-res Image Gene #1409: 'SYT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NCL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S14282.  Gene #1410: 'NCL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NCL MUTATED 1 3 6
NCL WILD-TYPE 41 170 141
'NCL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.96

Table S14283.  Gene #1410: 'NCL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NCL MUTATED 2 4 2
NCL WILD-TYPE 60 69 73
'NCL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S14284.  Gene #1410: 'NCL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NCL MUTATED 1 3 3
NCL WILD-TYPE 69 117 97
'NCL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S14285.  Gene #1410: 'NCL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NCL MUTATED 0 1 1 0 3 2 0 0 0
NCL WILD-TYPE 41 25 29 29 36 67 20 14 22
'NCL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S14286.  Gene #1410: 'NCL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NCL MUTATED 4 1 2 3
NCL WILD-TYPE 96 71 70 118
'NCL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0908 (Fisher's exact test), Q value = 0.33

Table S14287.  Gene #1410: 'NCL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NCL MUTATED 0 4 3 1 2
NCL WILD-TYPE 59 71 71 118 36
'NCL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S14288.  Gene #1410: 'NCL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NCL MUTATED 1 4 1 2 1
NCL WILD-TYPE 50 72 60 69 94
'NCL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S14289.  Gene #1410: 'NCL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NCL MUTATED 3 1 0 1 3 0 0 0 1
NCL WILD-TYPE 66 47 39 15 50 20 21 38 49
'NCL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S14290.  Gene #1410: 'NCL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NCL MUTATED 0 0 2 0 1 0
NCL WILD-TYPE 13 16 12 11 10 9
'NCL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S14291.  Gene #1410: 'NCL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NCL MUTATED 0 0 0 1 1 1 0 0 0
NCL WILD-TYPE 11 7 7 8 7 6 11 9 5
'ZNF462 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0513 (Fisher's exact test), Q value = 0.24

Table S14292.  Gene #1411: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF462 MUTATED 5 0 1 1 0
ZNF462 WILD-TYPE 27 18 45 26 23
'ZNF462 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S14293.  Gene #1411: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF462 MUTATED 4 1 2
ZNF462 WILD-TYPE 39 66 34
'ZNF462 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 0.021

Table S14294.  Gene #1411: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF462 MUTATED 3 4 19
ZNF462 WILD-TYPE 39 169 128

Figure S3644.  Get High-res Image Gene #1411: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF462 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.96

Table S14295.  Gene #1411: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF462 MUTATED 6 4 7
ZNF462 WILD-TYPE 56 69 68
'ZNF462 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S14296.  Gene #1411: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF462 MUTATED 3 6 11
ZNF462 WILD-TYPE 67 114 89
'ZNF462 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S14297.  Gene #1411: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF462 MUTATED 3 1 2 2 1 10 1 0 0
ZNF462 WILD-TYPE 38 25 28 27 38 59 19 14 22
'ZNF462 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.54

Table S14298.  Gene #1411: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF462 MUTATED 4 8 7 7
ZNF462 WILD-TYPE 96 64 65 114
'ZNF462 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S14299.  Gene #1411: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF462 MUTATED 2 4 12 4 4
ZNF462 WILD-TYPE 57 71 62 115 34

Figure S3645.  Get High-res Image Gene #1411: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF462 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S14300.  Gene #1411: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF462 MUTATED 2 10 4 3 6
ZNF462 WILD-TYPE 49 66 57 68 89
'ZNF462 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00488 (Fisher's exact test), Q value = 0.065

Table S14301.  Gene #1411: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF462 MUTATED 3 6 0 5 4 1 3 2 1
ZNF462 WILD-TYPE 66 42 39 11 49 19 18 36 49

Figure S3646.  Get High-res Image Gene #1411: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF462 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S14302.  Gene #1411: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF462 MUTATED 1 2 0 0 2 1
ZNF462 WILD-TYPE 12 14 14 11 9 8
'ZNF462 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.6

Table S14303.  Gene #1411: 'ZNF462 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF462 MUTATED 1 0 0 3 0 1 1 0 0
ZNF462 WILD-TYPE 10 7 7 6 8 6 10 9 5
'SIX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.19

Table S14304.  Gene #1412: 'SIX5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SIX5 MUTATED 0 0 5
SIX5 WILD-TYPE 42 173 142

Figure S3647.  Get High-res Image Gene #1412: 'SIX5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SIX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S14305.  Gene #1412: 'SIX5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SIX5 MUTATED 0 0 3
SIX5 WILD-TYPE 62 73 72
'SIX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S14306.  Gene #1412: 'SIX5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SIX5 MUTATED 2 0 2
SIX5 WILD-TYPE 68 120 98
'SIX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S14307.  Gene #1412: 'SIX5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SIX5 MUTATED 1 0 0 0 1 1 1 0 0
SIX5 WILD-TYPE 40 26 30 29 38 68 19 14 22
'SIX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S14308.  Gene #1412: 'SIX5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SIX5 MUTATED 0 1 2 2
SIX5 WILD-TYPE 100 71 70 119
'SIX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00722 (Fisher's exact test), Q value = 0.08

Table S14309.  Gene #1412: 'SIX5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SIX5 MUTATED 0 0 3 0 2
SIX5 WILD-TYPE 59 75 71 119 36

Figure S3648.  Get High-res Image Gene #1412: 'SIX5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SIX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S14310.  Gene #1412: 'SIX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SIX5 MUTATED 0 3 0 0 2
SIX5 WILD-TYPE 51 73 61 71 93
'SIX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S14311.  Gene #1412: 'SIX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SIX5 MUTATED 1 1 0 1 0 0 0 2 0
SIX5 WILD-TYPE 68 47 39 15 53 20 21 36 50
'C9ORF125 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00898 (Fisher's exact test), Q value = 0.089

Table S14312.  Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C9ORF125 MUTATED 4 0 0 0 0
C9ORF125 WILD-TYPE 28 18 46 27 23

Figure S3649.  Get High-res Image Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C9ORF125 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00935 (Fisher's exact test), Q value = 0.091

Table S14313.  Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C9ORF125 MUTATED 4 0 0
C9ORF125 WILD-TYPE 39 67 36

Figure S3650.  Get High-res Image Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'C9ORF125 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.012

Table S14314.  Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C9ORF125 MUTATED 1 0 11
C9ORF125 WILD-TYPE 41 173 136

Figure S3651.  Get High-res Image Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C9ORF125 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.16

Table S14315.  Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C9ORF125 MUTATED 2 0 6
C9ORF125 WILD-TYPE 60 73 69

Figure S3652.  Get High-res Image Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C9ORF125 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.61

Table S14316.  Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C9ORF125 MUTATED 1 3 6
C9ORF125 WILD-TYPE 69 117 94
'C9ORF125 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 0.83

Table S14317.  Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C9ORF125 MUTATED 0 0 1 2 2 5 0 0 0
C9ORF125 WILD-TYPE 41 26 29 27 37 64 20 14 22
'C9ORF125 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S14318.  Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C9ORF125 MUTATED 0 6 2 4
C9ORF125 WILD-TYPE 100 66 70 117

Figure S3653.  Get High-res Image Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C9ORF125 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00233 (Fisher's exact test), Q value = 0.041

Table S14319.  Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C9ORF125 MUTATED 0 1 7 1 3
C9ORF125 WILD-TYPE 59 74 67 118 35

Figure S3654.  Get High-res Image Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C9ORF125 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S14320.  Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C9ORF125 MUTATED 0 4 2 0 4
C9ORF125 WILD-TYPE 51 72 59 71 91
'C9ORF125 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S14321.  Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C9ORF125 MUTATED 1 2 0 3 0 0 0 3 1
C9ORF125 WILD-TYPE 68 46 39 13 53 20 21 35 49

Figure S3655.  Get High-res Image Gene #1413: 'C9ORF125 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AMBRA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S14322.  Gene #1414: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AMBRA1 MUTATED 2 0 0 2 0
AMBRA1 WILD-TYPE 30 18 46 25 23
'AMBRA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S14323.  Gene #1414: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AMBRA1 MUTATED 3 1 0
AMBRA1 WILD-TYPE 40 66 36
'AMBRA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.15

Table S14324.  Gene #1414: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AMBRA1 MUTATED 1 4 13
AMBRA1 WILD-TYPE 41 169 134

Figure S3656.  Get High-res Image Gene #1414: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AMBRA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S14325.  Gene #1414: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AMBRA1 MUTATED 5 4 5
AMBRA1 WILD-TYPE 57 69 70
'AMBRA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S14326.  Gene #1414: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AMBRA1 MUTATED 2 5 10
AMBRA1 WILD-TYPE 68 115 90
'AMBRA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S14327.  Gene #1414: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AMBRA1 MUTATED 2 0 1 2 2 8 2 0 0
AMBRA1 WILD-TYPE 39 26 29 27 37 61 18 14 22
'AMBRA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S14328.  Gene #1414: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AMBRA1 MUTATED 3 6 6 3
AMBRA1 WILD-TYPE 97 66 66 118
'AMBRA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S14329.  Gene #1414: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AMBRA1 MUTATED 3 3 8 1 3
AMBRA1 WILD-TYPE 56 72 66 118 35

Figure S3657.  Get High-res Image Gene #1414: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AMBRA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0891 (Fisher's exact test), Q value = 0.32

Table S14330.  Gene #1414: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AMBRA1 MUTATED 2 8 1 1 4
AMBRA1 WILD-TYPE 49 68 60 70 91
'AMBRA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S14331.  Gene #1414: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AMBRA1 MUTATED 1 7 0 2 2 1 0 2 1
AMBRA1 WILD-TYPE 68 41 39 14 51 19 21 36 49

Figure S3658.  Get High-res Image Gene #1414: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AMBRA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 0.26

Table S14332.  Gene #1414: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AMBRA1 MUTATED 0 0 1 3 1 0
AMBRA1 WILD-TYPE 13 16 13 8 10 9
'AMBRA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S14333.  Gene #1414: 'AMBRA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AMBRA1 MUTATED 0 0 2 0 0 1 2 0 0
AMBRA1 WILD-TYPE 11 7 5 9 8 6 9 9 5
'ANAPC16 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14334.  Gene #1415: 'ANAPC16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ANAPC16 MUTATED 0 2 1
ANAPC16 WILD-TYPE 42 171 146
'ANAPC16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14335.  Gene #1415: 'ANAPC16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ANAPC16 MUTATED 1 1 1
ANAPC16 WILD-TYPE 69 119 99
'ANAPC16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S14336.  Gene #1415: 'ANAPC16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ANAPC16 MUTATED 1 0 1 0 0 1 0 0 0
ANAPC16 WILD-TYPE 40 26 29 29 39 68 20 14 22
'ANAPC16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.99

Table S14337.  Gene #1415: 'ANAPC16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ANAPC16 MUTATED 0 1 1 1
ANAPC16 WILD-TYPE 100 71 71 120
'ANAPC16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S14338.  Gene #1415: 'ANAPC16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ANAPC16 MUTATED 1 1 0 1 0
ANAPC16 WILD-TYPE 58 74 74 118 38
'SETX MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0562 (Fisher's exact test), Q value = 0.25

Table S14339.  Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SETX MUTATED 5 0 1 2 0
SETX WILD-TYPE 27 18 45 25 23
'SETX MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S14340.  Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SETX MUTATED 5 2 1
SETX WILD-TYPE 38 65 35
'SETX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00139 (Fisher's exact test), Q value = 0.031

Table S14341.  Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SETX MUTATED 3 4 18
SETX WILD-TYPE 39 169 129

Figure S3659.  Get High-res Image Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SETX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S14342.  Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SETX MUTATED 5 3 9
SETX WILD-TYPE 57 70 66
'SETX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S14343.  Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SETX MUTATED 3 10 9
SETX WILD-TYPE 67 110 91
'SETX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.61

Table S14344.  Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SETX MUTATED 3 2 3 3 0 5 4 1 1
SETX WILD-TYPE 38 24 27 26 39 64 16 13 21
'SETX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00994 (Fisher's exact test), Q value = 0.094

Table S14345.  Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SETX MUTATED 1 9 6 10
SETX WILD-TYPE 99 63 66 111

Figure S3660.  Get High-res Image Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SETX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.11

Table S14346.  Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SETX MUTATED 3 2 11 5 5
SETX WILD-TYPE 56 73 63 114 33

Figure S3661.  Get High-res Image Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SETX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S14347.  Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SETX MUTATED 1 10 3 1 10
SETX WILD-TYPE 50 66 58 70 85

Figure S3662.  Get High-res Image Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SETX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00136 (Fisher's exact test), Q value = 0.03

Table S14348.  Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SETX MUTATED 2 5 0 5 2 2 0 6 3
SETX WILD-TYPE 67 43 39 11 51 18 21 32 47

Figure S3663.  Get High-res Image Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SETX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0081

Table S14349.  Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SETX MUTATED 0 0 0 0 5 1
SETX WILD-TYPE 13 16 14 11 6 8

Figure S3664.  Get High-res Image Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SETX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S14350.  Gene #1416: 'SETX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SETX MUTATED 1 0 0 2 1 0 2 0 0
SETX WILD-TYPE 10 7 7 7 7 7 9 9 5
'PEBP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.72

Table S14351.  Gene #1417: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PEBP4 MUTATED 0 2 5
PEBP4 WILD-TYPE 42 171 142
'PEBP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S14352.  Gene #1417: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PEBP4 MUTATED 1 2 4
PEBP4 WILD-TYPE 61 71 71
'PEBP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.78

Table S14353.  Gene #1417: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PEBP4 MUTATED 0 3 3
PEBP4 WILD-TYPE 70 117 97
'PEBP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.84

Table S14354.  Gene #1417: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PEBP4 MUTATED 0 0 0 1 0 3 1 0 1
PEBP4 WILD-TYPE 41 26 30 28 39 66 19 14 21
'PEBP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0398 (Fisher's exact test), Q value = 0.21

Table S14355.  Gene #1417: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PEBP4 MUTATED 2 4 1 0
PEBP4 WILD-TYPE 98 68 71 121

Figure S3665.  Get High-res Image Gene #1417: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PEBP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00948 (Fisher's exact test), Q value = 0.092

Table S14356.  Gene #1417: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PEBP4 MUTATED 0 2 5 0 0
PEBP4 WILD-TYPE 59 73 69 119 38

Figure S3666.  Get High-res Image Gene #1417: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PEBP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0427 (Fisher's exact test), Q value = 0.22

Table S14357.  Gene #1417: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PEBP4 MUTATED 2 4 0 1 0
PEBP4 WILD-TYPE 49 72 61 70 95

Figure S3667.  Get High-res Image Gene #1417: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PEBP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00902 (Fisher's exact test), Q value = 0.089

Table S14358.  Gene #1417: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PEBP4 MUTATED 1 1 0 3 1 1 0 0 0
PEBP4 WILD-TYPE 68 47 39 13 52 19 21 38 50

Figure S3668.  Get High-res Image Gene #1417: 'PEBP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LEPROTL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.19

Table S14359.  Gene #1418: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LEPROTL1 MUTATED 0 0 5
LEPROTL1 WILD-TYPE 42 173 142

Figure S3669.  Get High-res Image Gene #1418: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LEPROTL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S14360.  Gene #1418: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LEPROTL1 MUTATED 2 1 2
LEPROTL1 WILD-TYPE 68 119 98
'LEPROTL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.987 (Fisher's exact test), Q value = 1

Table S14361.  Gene #1418: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LEPROTL1 MUTATED 1 1 0 0 1 2 0 0 0
LEPROTL1 WILD-TYPE 40 25 30 29 38 67 20 14 22
'LEPROTL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 0.34

Table S14362.  Gene #1418: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LEPROTL1 MUTATED 0 0 3 2
LEPROTL1 WILD-TYPE 100 72 69 119
'LEPROTL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00795 (Fisher's exact test), Q value = 0.084

Table S14363.  Gene #1418: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LEPROTL1 MUTATED 0 0 3 0 2
LEPROTL1 WILD-TYPE 59 75 71 119 36

Figure S3670.  Get High-res Image Gene #1418: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LEPROTL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 0.88

Table S14364.  Gene #1418: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LEPROTL1 MUTATED 0 1 1 0 3
LEPROTL1 WILD-TYPE 51 75 60 71 92
'LEPROTL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0879 (Fisher's exact test), Q value = 0.32

Table S14365.  Gene #1418: 'LEPROTL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LEPROTL1 MUTATED 0 2 0 0 0 0 1 2 0
LEPROTL1 WILD-TYPE 69 46 39 16 53 20 20 36 50
'MAP7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00154 (Fisher's exact test), Q value = 0.032

Table S14366.  Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MAP7 MUTATED 6 0 0 1 0
MAP7 WILD-TYPE 26 18 46 26 23

Figure S3671.  Get High-res Image Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MAP7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 0.22

Table S14367.  Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MAP7 MUTATED 5 1 1
MAP7 WILD-TYPE 38 66 35

Figure S3672.  Get High-res Image Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MAP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0053

Table S14368.  Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAP7 MUTATED 0 0 11
MAP7 WILD-TYPE 42 173 136

Figure S3673.  Get High-res Image Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S14369.  Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAP7 MUTATED 1 0 3
MAP7 WILD-TYPE 61 73 72
'MAP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S14370.  Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAP7 MUTATED 0 3 4
MAP7 WILD-TYPE 70 117 96
'MAP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S14371.  Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAP7 MUTATED 0 1 1 0 0 4 0 0 1
MAP7 WILD-TYPE 41 25 29 29 39 65 20 14 21
'MAP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 0.21

Table S14372.  Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAP7 MUTATED 0 3 1 7
MAP7 WILD-TYPE 100 69 71 114

Figure S3674.  Get High-res Image Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0012 (Fisher's exact test), Q value = 0.028

Table S14373.  Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAP7 MUTATED 0 0 4 2 5
MAP7 WILD-TYPE 59 75 70 117 33

Figure S3675.  Get High-res Image Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S14374.  Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAP7 MUTATED 0 4 0 1 5
MAP7 WILD-TYPE 51 72 61 70 90
'MAP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00246 (Fisher's exact test), Q value = 0.042

Table S14375.  Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAP7 MUTATED 0 1 0 3 1 1 1 3 0
MAP7 WILD-TYPE 69 47 39 13 52 19 20 35 50

Figure S3676.  Get High-res Image Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0063 (Fisher's exact test), Q value = 0.074

Table S14376.  Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAP7 MUTATED 0 0 0 0 3 0
MAP7 WILD-TYPE 13 16 14 11 8 9

Figure S3677.  Get High-res Image Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S14377.  Gene #1419: 'MAP7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAP7 MUTATED 0 0 0 2 0 0 1 0 0
MAP7 WILD-TYPE 11 7 7 7 8 7 10 9 5
'MCF2L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S14378.  Gene #1420: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MCF2L2 MUTATED 2 1 0 1 0
MCF2L2 WILD-TYPE 30 17 46 26 23
'MCF2L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S14379.  Gene #1420: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MCF2L2 MUTATED 2 1 1
MCF2L2 WILD-TYPE 41 66 35
'MCF2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00278 (Fisher's exact test), Q value = 0.045

Table S14380.  Gene #1420: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MCF2L2 MUTATED 0 4 15
MCF2L2 WILD-TYPE 42 169 132

Figure S3678.  Get High-res Image Gene #1420: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MCF2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00116 (Fisher's exact test), Q value = 0.027

Table S14381.  Gene #1420: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MCF2L2 MUTATED 9 0 4
MCF2L2 WILD-TYPE 53 73 71

Figure S3679.  Get High-res Image Gene #1420: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MCF2L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.2

Table S14382.  Gene #1420: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MCF2L2 MUTATED 0 6 8
MCF2L2 WILD-TYPE 70 114 92

Figure S3680.  Get High-res Image Gene #1420: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MCF2L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.92

Table S14383.  Gene #1420: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MCF2L2 MUTATED 1 1 3 1 0 5 1 1 1
MCF2L2 WILD-TYPE 40 25 27 28 39 64 19 13 21
'MCF2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S14384.  Gene #1420: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MCF2L2 MUTATED 2 6 5 6
MCF2L2 WILD-TYPE 98 66 67 115
'MCF2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.53

Table S14385.  Gene #1420: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MCF2L2 MUTATED 3 3 7 3 3
MCF2L2 WILD-TYPE 56 72 67 116 35
'MCF2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S14386.  Gene #1420: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MCF2L2 MUTATED 1 9 2 2 4
MCF2L2 WILD-TYPE 50 67 59 69 91
'MCF2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0527 (Fisher's exact test), Q value = 0.25

Table S14387.  Gene #1420: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MCF2L2 MUTATED 1 4 1 4 3 0 0 2 3
MCF2L2 WILD-TYPE 68 44 38 12 50 20 21 36 47
'MCF2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S14388.  Gene #1420: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MCF2L2 MUTATED 0 0 1 1 2 0
MCF2L2 WILD-TYPE 13 16 13 10 9 9
'MCF2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.92

Table S14389.  Gene #1420: 'MCF2L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MCF2L2 MUTATED 0 0 0 1 1 0 2 0 0
MCF2L2 WILD-TYPE 11 7 7 8 7 7 9 9 5
'ANKRD26 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0768 (Fisher's exact test), Q value = 0.3

Table S14390.  Gene #1421: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ANKRD26 MUTATED 3 0 0 2 0
ANKRD26 WILD-TYPE 29 18 46 25 23
'ANKRD26 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.067 (Fisher's exact test), Q value = 0.28

Table S14391.  Gene #1421: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ANKRD26 MUTATED 4 1 0
ANKRD26 WILD-TYPE 39 66 36
'ANKRD26 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0914 (Fisher's exact test), Q value = 0.33

Table S14392.  Gene #1421: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ANKRD26 MUTATED 2 5 12
ANKRD26 WILD-TYPE 40 168 135
'ANKRD26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0455 (Fisher's exact test), Q value = 0.23

Table S14393.  Gene #1421: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ANKRD26 MUTATED 3 2 10
ANKRD26 WILD-TYPE 59 71 65

Figure S3681.  Get High-res Image Gene #1421: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ANKRD26 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S14394.  Gene #1421: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ANKRD26 MUTATED 2 4 9
ANKRD26 WILD-TYPE 68 116 91
'ANKRD26 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S14395.  Gene #1421: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ANKRD26 MUTATED 4 1 1 1 2 5 1 0 0
ANKRD26 WILD-TYPE 37 25 29 28 37 64 19 14 22
'ANKRD26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S14396.  Gene #1421: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ANKRD26 MUTATED 3 7 4 5
ANKRD26 WILD-TYPE 97 65 68 116
'ANKRD26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.12

Table S14397.  Gene #1421: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ANKRD26 MUTATED 4 3 7 1 4
ANKRD26 WILD-TYPE 55 72 67 118 34

Figure S3682.  Get High-res Image Gene #1421: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKRD26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S14398.  Gene #1421: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ANKRD26 MUTATED 4 5 2 1 6
ANKRD26 WILD-TYPE 47 71 59 70 89
'ANKRD26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.099

Table S14399.  Gene #1421: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ANKRD26 MUTATED 2 5 1 3 0 2 0 4 1
ANKRD26 WILD-TYPE 67 43 38 13 53 18 21 34 49

Figure S3683.  Get High-res Image Gene #1421: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ANKRD26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S14400.  Gene #1421: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ANKRD26 MUTATED 0 0 0 1 1 1
ANKRD26 WILD-TYPE 13 16 14 10 10 8
'ANKRD26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S14401.  Gene #1421: 'ANKRD26 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ANKRD26 MUTATED 1 0 1 1 0 0 0 0 0
ANKRD26 WILD-TYPE 10 7 6 8 8 7 11 9 5
'DNAJC18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S14402.  Gene #1422: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DNAJC18 MUTATED 0 3 4
DNAJC18 WILD-TYPE 42 170 143
'DNAJC18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14403.  Gene #1422: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DNAJC18 MUTATED 2 2 2
DNAJC18 WILD-TYPE 60 71 73
'DNAJC18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S14404.  Gene #1422: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DNAJC18 MUTATED 0 2 4
DNAJC18 WILD-TYPE 70 118 96
'DNAJC18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S14405.  Gene #1422: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DNAJC18 MUTATED 1 0 0 0 0 3 0 1 1
DNAJC18 WILD-TYPE 40 26 30 29 39 66 20 13 21
'DNAJC18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S14406.  Gene #1422: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DNAJC18 MUTATED 2 2 2 1
DNAJC18 WILD-TYPE 98 70 70 120
'DNAJC18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.081 (Fisher's exact test), Q value = 0.31

Table S14407.  Gene #1422: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DNAJC18 MUTATED 3 1 2 0 1
DNAJC18 WILD-TYPE 56 74 72 119 37
'DNAJC18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S14408.  Gene #1422: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DNAJC18 MUTATED 2 2 1 0 1
DNAJC18 WILD-TYPE 49 74 60 71 94
'DNAJC18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S14409.  Gene #1422: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DNAJC18 MUTATED 2 1 1 1 0 0 0 0 1
DNAJC18 WILD-TYPE 67 47 38 15 53 20 21 38 49
'ESRP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S14410.  Gene #1423: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ESRP2 MUTATED 2 0 0 1 0
ESRP2 WILD-TYPE 30 18 46 26 23
'ESRP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S14411.  Gene #1423: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ESRP2 MUTATED 2 1 0
ESRP2 WILD-TYPE 41 66 36
'ESRP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.98

Table S14412.  Gene #1423: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ESRP2 MUTATED 0 5 3
ESRP2 WILD-TYPE 42 168 144
'ESRP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.78

Table S14413.  Gene #1423: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ESRP2 MUTATED 3 2 1
ESRP2 WILD-TYPE 59 71 74
'ESRP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S14414.  Gene #1423: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ESRP2 MUTATED 1 3 4
ESRP2 WILD-TYPE 69 117 96
'ESRP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S14415.  Gene #1423: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ESRP2 MUTATED 0 1 2 0 1 2 2 0 0
ESRP2 WILD-TYPE 41 25 28 29 38 67 18 14 22
'ESRP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.76

Table S14416.  Gene #1423: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ESRP2 MUTATED 3 0 3 3
ESRP2 WILD-TYPE 97 72 69 118
'ESRP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S14417.  Gene #1423: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ESRP2 MUTATED 3 2 1 1 2
ESRP2 WILD-TYPE 56 73 73 118 36
'ESRP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S14418.  Gene #1423: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ESRP2 MUTATED 0 3 1 2 2
ESRP2 WILD-TYPE 51 73 60 69 93
'ESRP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S14419.  Gene #1423: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ESRP2 MUTATED 2 3 0 0 0 1 0 1 1
ESRP2 WILD-TYPE 67 45 39 16 53 19 21 37 49
'ESRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S14420.  Gene #1423: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ESRP2 MUTATED 1 0 0 1 1 1
ESRP2 WILD-TYPE 12 16 14 10 10 8
'ESRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S14421.  Gene #1423: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ESRP2 MUTATED 1 0 0 0 0 0 2 1 0
ESRP2 WILD-TYPE 10 7 7 9 8 7 9 8 5
'NLRP13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S14422.  Gene #1424: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NLRP13 MUTATED 4 1 1 1 0
NLRP13 WILD-TYPE 28 17 45 26 23
'NLRP13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S14423.  Gene #1424: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NLRP13 MUTATED 3 2 2
NLRP13 WILD-TYPE 40 65 34
'NLRP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0469 (Fisher's exact test), Q value = 0.23

Table S14424.  Gene #1424: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NLRP13 MUTATED 1 9 17
NLRP13 WILD-TYPE 41 164 130

Figure S3684.  Get High-res Image Gene #1424: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NLRP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 0.29

Table S14425.  Gene #1424: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NLRP13 MUTATED 10 5 4
NLRP13 WILD-TYPE 52 68 71
'NLRP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S14426.  Gene #1424: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NLRP13 MUTATED 2 11 9
NLRP13 WILD-TYPE 68 109 91
'NLRP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 0.96

Table S14427.  Gene #1424: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NLRP13 MUTATED 1 3 1 3 2 7 1 2 2
NLRP13 WILD-TYPE 40 23 29 26 37 62 19 12 20
'NLRP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S14428.  Gene #1424: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NLRP13 MUTATED 7 5 7 7
NLRP13 WILD-TYPE 93 67 65 114
'NLRP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S14429.  Gene #1424: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NLRP13 MUTATED 4 7 7 5 3
NLRP13 WILD-TYPE 55 68 67 114 35
'NLRP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.94

Table S14430.  Gene #1424: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NLRP13 MUTATED 5 8 3 4 6
NLRP13 WILD-TYPE 46 68 58 67 89
'NLRP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.79

Table S14431.  Gene #1424: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NLRP13 MUTATED 5 6 1 1 3 4 1 2 3
NLRP13 WILD-TYPE 64 42 38 15 50 16 20 36 47
'NLRP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S14432.  Gene #1424: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NLRP13 MUTATED 1 2 1 0 2 0
NLRP13 WILD-TYPE 12 14 13 11 9 9
'NLRP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S14433.  Gene #1424: 'NLRP13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NLRP13 MUTATED 2 0 0 2 1 1 0 0 0
NLRP13 WILD-TYPE 9 7 7 7 7 6 11 9 5
'LRRN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0991 (Fisher's exact test), Q value = 0.34

Table S14434.  Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LRRN1 MUTATED 3 0 0 1 0
LRRN1 WILD-TYPE 29 18 46 26 23
'LRRN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00913 (Fisher's exact test), Q value = 0.09

Table S14435.  Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LRRN1 MUTATED 4 0 0
LRRN1 WILD-TYPE 39 67 36

Figure S3685.  Get High-res Image Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LRRN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S14436.  Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LRRN1 MUTATED 0 0 17
LRRN1 WILD-TYPE 42 173 130

Figure S3686.  Get High-res Image Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LRRN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00346 (Fisher's exact test), Q value = 0.052

Table S14437.  Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LRRN1 MUTATED 4 0 9
LRRN1 WILD-TYPE 58 73 66

Figure S3687.  Get High-res Image Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LRRN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S14438.  Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LRRN1 MUTATED 4 3 6
LRRN1 WILD-TYPE 66 117 94
'LRRN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.99

Table S14439.  Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LRRN1 MUTATED 2 0 0 2 2 5 1 1 0
LRRN1 WILD-TYPE 39 26 30 27 37 64 19 13 22
'LRRN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.095

Table S14440.  Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LRRN1 MUTATED 1 7 6 3
LRRN1 WILD-TYPE 99 65 66 118

Figure S3688.  Get High-res Image Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LRRN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S14441.  Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LRRN1 MUTATED 1 1 12 0 3
LRRN1 WILD-TYPE 58 74 62 119 35

Figure S3689.  Get High-res Image Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LRRN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S14442.  Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LRRN1 MUTATED 0 11 2 0 3
LRRN1 WILD-TYPE 51 65 59 71 92

Figure S3690.  Get High-res Image Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LRRN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S14443.  Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LRRN1 MUTATED 2 6 0 5 0 0 0 3 0
LRRN1 WILD-TYPE 67 42 39 11 53 20 21 35 50

Figure S3691.  Get High-res Image Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LRRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00223 (Fisher's exact test), Q value = 0.04

Table S14444.  Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LRRN1 MUTATED 0 1 1 0 5 0
LRRN1 WILD-TYPE 13 15 13 11 6 9

Figure S3692.  Get High-res Image Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'LRRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 0.22

Table S14445.  Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LRRN1 MUTATED 0 0 0 1 2 0 4 0 0
LRRN1 WILD-TYPE 11 7 7 8 6 7 7 9 5

Figure S3693.  Get High-res Image Gene #1425: 'LRRN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'VIM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S14446.  Gene #1426: 'VIM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
VIM MUTATED 0 1 5
VIM WILD-TYPE 42 172 142
'VIM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S14447.  Gene #1426: 'VIM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
VIM MUTATED 1 0 3
VIM WILD-TYPE 61 73 72
'VIM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S14448.  Gene #1426: 'VIM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
VIM MUTATED 3 1 1
VIM WILD-TYPE 67 119 99
'VIM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S14449.  Gene #1426: 'VIM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
VIM MUTATED 1 1 0 0 1 1 1 0 0
VIM WILD-TYPE 40 25 30 29 38 68 19 14 22
'VIM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.98

Table S14450.  Gene #1426: 'VIM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
VIM MUTATED 2 2 0 3
VIM WILD-TYPE 98 70 72 118
'VIM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S14451.  Gene #1426: 'VIM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
VIM MUTATED 0 2 2 2 1
VIM WILD-TYPE 59 73 72 117 37
'VIM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.89

Table S14452.  Gene #1426: 'VIM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
VIM MUTATED 1 2 0 0 2
VIM WILD-TYPE 50 74 61 71 93
'VIM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S14453.  Gene #1426: 'VIM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
VIM MUTATED 3 0 0 0 1 0 0 0 1
VIM WILD-TYPE 66 48 39 16 52 20 21 38 49
'WDR45L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.79

Table S14454.  Gene #1427: 'WDR45L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WDR45L MUTATED 1 2 4
WDR45L WILD-TYPE 41 171 143
'WDR45L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.91

Table S14455.  Gene #1427: 'WDR45L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WDR45L MUTATED 2 3 1
WDR45L WILD-TYPE 60 70 74
'WDR45L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S14456.  Gene #1427: 'WDR45L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WDR45L MUTATED 1 1 3
WDR45L WILD-TYPE 69 119 97
'WDR45L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S14457.  Gene #1427: 'WDR45L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WDR45L MUTATED 0 0 1 1 0 3 0 0 0
WDR45L WILD-TYPE 41 26 29 28 39 66 20 14 22
'WDR45L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S14458.  Gene #1427: 'WDR45L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WDR45L MUTATED 3 0 3 1
WDR45L WILD-TYPE 97 72 69 120
'WDR45L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0544 (Fisher's exact test), Q value = 0.25

Table S14459.  Gene #1427: 'WDR45L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WDR45L MUTATED 0 3 3 0 1
WDR45L WILD-TYPE 59 72 71 119 37
'WDR45L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.98

Table S14460.  Gene #1427: 'WDR45L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WDR45L MUTATED 2 1 2 1 1
WDR45L WILD-TYPE 49 75 59 70 94
'WDR45L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.62

Table S14461.  Gene #1427: 'WDR45L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WDR45L MUTATED 2 3 0 0 0 1 0 1 0
WDR45L WILD-TYPE 67 45 39 16 53 19 21 37 50
'PISD MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14462.  Gene #1428: 'PISD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PISD MUTATED 0 2 1
PISD WILD-TYPE 42 171 146
'PISD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14463.  Gene #1428: 'PISD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PISD MUTATED 1 1 1
PISD WILD-TYPE 61 72 74
'PISD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S14464.  Gene #1428: 'PISD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PISD MUTATED 2 1 0 0
PISD WILD-TYPE 98 71 72 121
'PISD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S14465.  Gene #1428: 'PISD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PISD MUTATED 1 1 1 0 0
PISD WILD-TYPE 58 74 73 119 38
'PISD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S14466.  Gene #1428: 'PISD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PISD MUTATED 0 2 1 0 0
PISD WILD-TYPE 51 74 60 71 95
'PISD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S14467.  Gene #1428: 'PISD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PISD MUTATED 1 1 0 0 1 0 0 0 0
PISD WILD-TYPE 68 47 39 16 52 20 21 38 50
'ST18 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S14468.  Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ST18 MUTATED 2 0 0 2 0
ST18 WILD-TYPE 30 18 46 25 23
'ST18 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S14469.  Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ST18 MUTATED 2 1 1
ST18 WILD-TYPE 41 66 35
'ST18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00089 (Fisher's exact test), Q value = 0.023

Table S14470.  Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ST18 MUTATED 3 3 17
ST18 WILD-TYPE 39 170 130

Figure S3694.  Get High-res Image Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ST18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 0.24

Table S14471.  Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ST18 MUTATED 8 2 9
ST18 WILD-TYPE 54 71 66
'ST18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S14472.  Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ST18 MUTATED 2 5 13
ST18 WILD-TYPE 68 115 87

Figure S3695.  Get High-res Image Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ST18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.18

Table S14473.  Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ST18 MUTATED 1 1 1 1 0 12 2 1 1
ST18 WILD-TYPE 40 25 29 28 39 57 18 13 21

Figure S3696.  Get High-res Image Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ST18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S14474.  Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ST18 MUTATED 2 9 7 5
ST18 WILD-TYPE 98 63 65 116

Figure S3697.  Get High-res Image Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ST18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00683 (Fisher's exact test), Q value = 0.077

Table S14475.  Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ST18 MUTATED 2 4 12 3 2
ST18 WILD-TYPE 57 71 62 116 36

Figure S3698.  Get High-res Image Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ST18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S14476.  Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ST18 MUTATED 1 13 4 1 2
ST18 WILD-TYPE 50 63 57 70 93

Figure S3699.  Get High-res Image Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ST18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0724 (Fisher's exact test), Q value = 0.29

Table S14477.  Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ST18 MUTATED 6 5 1 3 3 2 0 0 1
ST18 WILD-TYPE 63 43 38 13 50 18 21 38 49
'ST18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S14478.  Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ST18 MUTATED 0 3 0 0 1 0
ST18 WILD-TYPE 13 13 14 11 10 9
'ST18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.95

Table S14479.  Gene #1429: 'ST18 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ST18 MUTATED 2 1 0 0 0 0 1 0 0
ST18 WILD-TYPE 9 6 7 9 8 7 10 9 5
'MAGOHB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S14480.  Gene #1430: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAGOHB MUTATED 0 1 2
MAGOHB WILD-TYPE 42 172 145
'MAGOHB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S14481.  Gene #1430: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAGOHB MUTATED 3 0 0
MAGOHB WILD-TYPE 59 73 75

Figure S3700.  Get High-res Image Gene #1430: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MAGOHB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S14482.  Gene #1430: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAGOHB MUTATED 1 0 2
MAGOHB WILD-TYPE 69 120 98
'MAGOHB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.96

Table S14483.  Gene #1430: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAGOHB MUTATED 0 0 0 0 0 3 0 0 0
MAGOHB WILD-TYPE 41 26 30 29 39 66 20 14 22
'MAGOHB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S14484.  Gene #1430: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAGOHB MUTATED 0 0 3 0
MAGOHB WILD-TYPE 100 72 69 121

Figure S3701.  Get High-res Image Gene #1430: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAGOHB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S14485.  Gene #1430: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAGOHB MUTATED 1 0 2 0 0
MAGOHB WILD-TYPE 58 75 72 119 38
'MAGOHB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S14486.  Gene #1430: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAGOHB MUTATED 0 1 2 0 0
MAGOHB WILD-TYPE 51 75 59 71 95
'MAGOHB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S14487.  Gene #1430: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAGOHB MUTATED 2 1 0 0 0 0 0 0 0
MAGOHB WILD-TYPE 67 47 39 16 53 20 21 38 50
'MAGOHB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.94

Table S14488.  Gene #1430: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MAGOHB MUTATED 0 2 1 0 0 0
MAGOHB WILD-TYPE 13 14 13 11 11 9
'MAGOHB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0408 (Fisher's exact test), Q value = 0.21

Table S14489.  Gene #1430: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MAGOHB MUTATED 3 0 0 0 0 0 0 0 0
MAGOHB WILD-TYPE 8 7 7 9 8 7 11 9 5

Figure S3702.  Get High-res Image Gene #1430: 'MAGOHB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DEFB129 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S14490.  Gene #1431: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DEFB129 MUTATED 2 0 1 0 0
DEFB129 WILD-TYPE 30 18 45 27 23
'DEFB129 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S14491.  Gene #1431: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DEFB129 MUTATED 2 0 1
DEFB129 WILD-TYPE 41 67 35
'DEFB129 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S14492.  Gene #1431: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DEFB129 MUTATED 1 1 3
DEFB129 WILD-TYPE 41 172 144
'DEFB129 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S14493.  Gene #1431: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DEFB129 MUTATED 1 0 3
DEFB129 WILD-TYPE 69 120 97
'DEFB129 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S14494.  Gene #1431: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DEFB129 MUTATED 0 0 0 0 2 1 1 0 0
DEFB129 WILD-TYPE 41 26 30 29 37 68 19 14 22
'DEFB129 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S14495.  Gene #1431: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DEFB129 MUTATED 0 0 2 3
DEFB129 WILD-TYPE 100 72 70 118
'DEFB129 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S14496.  Gene #1431: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DEFB129 MUTATED 1 0 1 1 2
DEFB129 WILD-TYPE 58 75 73 118 36
'DEFB129 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S14497.  Gene #1431: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DEFB129 MUTATED 0 2 0 1 2
DEFB129 WILD-TYPE 51 74 61 70 93
'DEFB129 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S14498.  Gene #1431: 'DEFB129 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DEFB129 MUTATED 1 1 0 0 0 0 0 2 1
DEFB129 WILD-TYPE 68 47 39 16 53 20 21 36 49
'OR8K3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.53

Table S14499.  Gene #1432: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR8K3 MUTATED 0 3 7
OR8K3 WILD-TYPE 42 170 140
'OR8K3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S14500.  Gene #1432: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR8K3 MUTATED 5 1 2
OR8K3 WILD-TYPE 57 72 73
'OR8K3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.62

Table S14501.  Gene #1432: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR8K3 MUTATED 2 1 4
OR8K3 WILD-TYPE 68 119 96
'OR8K3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S14502.  Gene #1432: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR8K3 MUTATED 2 0 1 0 0 3 0 1 0
OR8K3 WILD-TYPE 39 26 29 29 39 66 20 13 22
'OR8K3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S14503.  Gene #1432: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR8K3 MUTATED 2 3 3 2
OR8K3 WILD-TYPE 98 69 69 119
'OR8K3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S14504.  Gene #1432: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR8K3 MUTATED 2 3 3 1 1
OR8K3 WILD-TYPE 57 72 71 118 37
'OR8K3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.88

Table S14505.  Gene #1432: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR8K3 MUTATED 1 4 2 2 1
OR8K3 WILD-TYPE 50 72 59 69 94
'OR8K3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.91

Table S14506.  Gene #1432: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR8K3 MUTATED 3 2 0 1 2 1 0 1 0
OR8K3 WILD-TYPE 66 46 39 15 51 19 21 37 50
'OR8K3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.56

Table S14507.  Gene #1432: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR8K3 MUTATED 0 0 2 0 1 0
OR8K3 WILD-TYPE 13 16 12 11 10 9
'OR8K3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S14508.  Gene #1432: 'OR8K3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR8K3 MUTATED 0 0 0 0 2 0 1 0 0
OR8K3 WILD-TYPE 11 7 7 9 6 7 10 9 5
'G2E3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S14509.  Gene #1433: 'G2E3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
G2E3 MUTATED 0 2 10
G2E3 WILD-TYPE 42 171 137

Figure S3703.  Get High-res Image Gene #1433: 'G2E3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'G2E3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S14510.  Gene #1433: 'G2E3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
G2E3 MUTATED 5 3 2
G2E3 WILD-TYPE 57 70 73
'G2E3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0554 (Fisher's exact test), Q value = 0.25

Table S14511.  Gene #1433: 'G2E3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
G2E3 MUTATED 0 4 7
G2E3 WILD-TYPE 70 116 93
'G2E3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.95

Table S14512.  Gene #1433: 'G2E3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
G2E3 MUTATED 2 1 0 0 1 5 1 1 0
G2E3 WILD-TYPE 39 25 30 29 38 64 19 13 22
'G2E3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S14513.  Gene #1433: 'G2E3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
G2E3 MUTATED 2 5 2 3
G2E3 WILD-TYPE 98 67 70 118
'G2E3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0755 (Fisher's exact test), Q value = 0.3

Table S14514.  Gene #1433: 'G2E3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
G2E3 MUTATED 3 1 5 1 2
G2E3 WILD-TYPE 56 74 69 118 36
'G2E3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S14515.  Gene #1433: 'G2E3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
G2E3 MUTATED 0 3 2 3 3
G2E3 WILD-TYPE 51 73 59 68 92
'G2E3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S14516.  Gene #1433: 'G2E3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
G2E3 MUTATED 3 2 0 2 0 1 0 1 2
G2E3 WILD-TYPE 66 46 39 14 53 19 21 37 48
'GRK5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14517.  Gene #1434: 'GRK5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GRK5 MUTATED 1 0 1 1 1
GRK5 WILD-TYPE 31 18 45 26 22
'GRK5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.89

Table S14518.  Gene #1434: 'GRK5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GRK5 MUTATED 2 2 0
GRK5 WILD-TYPE 41 65 36
'GRK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S14519.  Gene #1434: 'GRK5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GRK5 MUTATED 1 4 6
GRK5 WILD-TYPE 41 169 141
'GRK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S14520.  Gene #1434: 'GRK5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GRK5 MUTATED 4 1 2
GRK5 WILD-TYPE 58 72 73
'GRK5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S14521.  Gene #1434: 'GRK5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GRK5 MUTATED 0 4 5
GRK5 WILD-TYPE 70 116 95
'GRK5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S14522.  Gene #1434: 'GRK5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GRK5 MUTATED 1 0 1 1 1 4 1 0 0
GRK5 WILD-TYPE 40 26 29 28 38 65 19 14 22
'GRK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S14523.  Gene #1434: 'GRK5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GRK5 MUTATED 2 2 3 4
GRK5 WILD-TYPE 98 70 69 117
'GRK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 0.77

Table S14524.  Gene #1434: 'GRK5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GRK5 MUTATED 3 1 3 2 2
GRK5 WILD-TYPE 56 74 71 117 36
'GRK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.74

Table S14525.  Gene #1434: 'GRK5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GRK5 MUTATED 2 3 3 0 3
GRK5 WILD-TYPE 49 73 58 71 92
'GRK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.88

Table S14526.  Gene #1434: 'GRK5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GRK5 MUTATED 1 3 1 0 2 1 1 2 0
GRK5 WILD-TYPE 68 45 38 16 51 19 20 36 50
'GLDN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.31

Table S14527.  Gene #1435: 'GLDN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GLDN MUTATED 0 1 6
GLDN WILD-TYPE 42 172 141
'GLDN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S14528.  Gene #1435: 'GLDN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GLDN MUTATED 3 2 0
GLDN WILD-TYPE 59 71 75
'GLDN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S14529.  Gene #1435: 'GLDN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GLDN MUTATED 0 1 4
GLDN WILD-TYPE 70 119 96
'GLDN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S14530.  Gene #1435: 'GLDN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GLDN MUTATED 0 0 0 0 0 5 0 0 0
GLDN WILD-TYPE 41 26 30 29 39 64 20 14 22
'GLDN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S14531.  Gene #1435: 'GLDN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GLDN MUTATED 2 1 2 2
GLDN WILD-TYPE 98 71 70 119
'GLDN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S14532.  Gene #1435: 'GLDN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GLDN MUTATED 0 2 3 1 1
GLDN WILD-TYPE 59 73 71 118 37
'GLDN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S14533.  Gene #1435: 'GLDN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GLDN MUTATED 0 4 0 2 1
GLDN WILD-TYPE 51 72 61 69 94
'GLDN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S14534.  Gene #1435: 'GLDN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GLDN MUTATED 3 2 0 0 1 0 0 1 0
GLDN WILD-TYPE 66 46 39 16 52 20 21 37 50
'LAMA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S14535.  Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LAMA3 MUTATED 5 1 0 3 3
LAMA3 WILD-TYPE 27 17 46 24 20

Figure S3704.  Get High-res Image Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LAMA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 0.83

Table S14536.  Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LAMA3 MUTATED 5 4 3
LAMA3 WILD-TYPE 38 63 33
'LAMA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00602 (Fisher's exact test), Q value = 0.073

Table S14537.  Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LAMA3 MUTATED 3 8 22
LAMA3 WILD-TYPE 39 165 125

Figure S3705.  Get High-res Image Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LAMA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00952 (Fisher's exact test), Q value = 0.092

Table S14538.  Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LAMA3 MUTATED 6 2 13
LAMA3 WILD-TYPE 56 71 62

Figure S3706.  Get High-res Image Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LAMA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S14539.  Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LAMA3 MUTATED 6 8 13
LAMA3 WILD-TYPE 64 112 87
'LAMA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S14540.  Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LAMA3 MUTATED 5 2 3 3 0 10 3 1 0
LAMA3 WILD-TYPE 36 24 27 26 39 59 17 13 22
'LAMA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00386 (Fisher's exact test), Q value = 0.055

Table S14541.  Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LAMA3 MUTATED 3 14 5 12
LAMA3 WILD-TYPE 97 58 67 109

Figure S3707.  Get High-res Image Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LAMA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0987 (Fisher's exact test), Q value = 0.34

Table S14542.  Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LAMA3 MUTATED 2 6 12 9 5
LAMA3 WILD-TYPE 57 69 62 110 33
'LAMA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.19

Table S14543.  Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LAMA3 MUTATED 4 13 1 5 10
LAMA3 WILD-TYPE 47 63 60 66 85

Figure S3708.  Get High-res Image Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LAMA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.16

Table S14544.  Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LAMA3 MUTATED 5 3 1 6 4 3 3 5 3
LAMA3 WILD-TYPE 64 45 38 10 49 17 18 33 47

Figure S3709.  Get High-res Image Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LAMA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S14545.  Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LAMA3 MUTATED 0 1 1 0 3 0
LAMA3 WILD-TYPE 13 15 13 11 8 9
'LAMA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S14546.  Gene #1436: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LAMA3 MUTATED 1 0 0 1 1 0 2 0 0
LAMA3 WILD-TYPE 10 7 7 8 7 7 9 9 5
'GNG12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00583 (Fisher's exact test), Q value = 0.072

Table S14547.  Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GNG12 MUTATED 1 0 7
GNG12 WILD-TYPE 41 173 140

Figure S3710.  Get High-res Image Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GNG12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.16

Table S14548.  Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GNG12 MUTATED 2 0 6
GNG12 WILD-TYPE 60 73 69

Figure S3711.  Get High-res Image Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GNG12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.58

Table S14549.  Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GNG12 MUTATED 0 3 4
GNG12 WILD-TYPE 70 117 96
'GNG12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S14550.  Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GNG12 MUTATED 0 1 0 2 0 4 0 0 0
GNG12 WILD-TYPE 41 25 30 27 39 65 20 14 22
'GNG12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.011

Table S14551.  Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GNG12 MUTATED 0 6 2 0
GNG12 WILD-TYPE 100 66 70 121

Figure S3712.  Get High-res Image Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GNG12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S14552.  Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GNG12 MUTATED 0 0 8 0 0
GNG12 WILD-TYPE 59 75 66 119 38

Figure S3713.  Get High-res Image Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S14553.  Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GNG12 MUTATED 0 8 0 0 0
GNG12 WILD-TYPE 51 68 61 71 95

Figure S3714.  Get High-res Image Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S14554.  Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GNG12 MUTATED 4 0 0 4 0 0 0 0 0
GNG12 WILD-TYPE 65 48 39 12 53 20 21 38 50

Figure S3715.  Get High-res Image Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 0.17

Table S14555.  Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GNG12 MUTATED 0 0 1 0 3 0
GNG12 WILD-TYPE 13 16 13 11 8 9

Figure S3716.  Get High-res Image Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S14556.  Gene #1437: 'GNG12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GNG12 MUTATED 0 0 0 2 0 1 1 0 0
GNG12 WILD-TYPE 11 7 7 7 8 6 10 9 5
'GUCY1A3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.92

Table S14557.  Gene #1438: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GUCY1A3 MUTATED 3 1 1 2 2
GUCY1A3 WILD-TYPE 29 17 45 25 21
'GUCY1A3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S14558.  Gene #1438: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GUCY1A3 MUTATED 5 4 0
GUCY1A3 WILD-TYPE 38 63 36
'GUCY1A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.19

Table S14559.  Gene #1438: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GUCY1A3 MUTATED 4 5 13
GUCY1A3 WILD-TYPE 38 168 134

Figure S3717.  Get High-res Image Gene #1438: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GUCY1A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.89

Table S14560.  Gene #1438: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GUCY1A3 MUTATED 3 3 6
GUCY1A3 WILD-TYPE 59 70 69
'GUCY1A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.77

Table S14561.  Gene #1438: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GUCY1A3 MUTATED 2 9 6
GUCY1A3 WILD-TYPE 68 111 94
'GUCY1A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S14562.  Gene #1438: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GUCY1A3 MUTATED 2 2 2 5 2 2 1 1 0
GUCY1A3 WILD-TYPE 39 24 28 24 37 67 19 13 22
'GUCY1A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0879 (Fisher's exact test), Q value = 0.32

Table S14563.  Gene #1438: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GUCY1A3 MUTATED 3 8 2 9
GUCY1A3 WILD-TYPE 97 64 70 112
'GUCY1A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S14564.  Gene #1438: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GUCY1A3 MUTATED 2 4 6 5 5
GUCY1A3 WILD-TYPE 57 71 68 114 33
'GUCY1A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S14565.  Gene #1438: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GUCY1A3 MUTATED 2 7 3 3 6
GUCY1A3 WILD-TYPE 49 69 58 68 89
'GUCY1A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.13

Table S14566.  Gene #1438: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GUCY1A3 MUTATED 1 2 3 4 2 2 0 5 2
GUCY1A3 WILD-TYPE 68 46 36 12 51 18 21 33 48

Figure S3718.  Get High-res Image Gene #1438: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GUCY1A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S14567.  Gene #1438: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GUCY1A3 MUTATED 2 1 1 0 1 0
GUCY1A3 WILD-TYPE 11 15 13 11 10 9
'GUCY1A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 0.77

Table S14568.  Gene #1438: 'GUCY1A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GUCY1A3 MUTATED 0 1 0 2 1 0 0 1 0
GUCY1A3 WILD-TYPE 11 6 7 7 7 7 11 8 5
'CALB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S14569.  Gene #1439: 'CALB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CALB2 MUTATED 0 1 3
CALB2 WILD-TYPE 42 172 144
'CALB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S14570.  Gene #1439: 'CALB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CALB2 MUTATED 1 0 2
CALB2 WILD-TYPE 61 73 73
'CALB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14571.  Gene #1439: 'CALB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CALB2 MUTATED 1 1 1
CALB2 WILD-TYPE 69 119 99
'CALB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S14572.  Gene #1439: 'CALB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CALB2 MUTATED 1 0 0 1 0 1 0 0 0
CALB2 WILD-TYPE 40 26 30 28 39 68 20 14 22
'CALB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S14573.  Gene #1439: 'CALB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CALB2 MUTATED 0 1 2 1
CALB2 WILD-TYPE 100 71 70 120
'CALB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S14574.  Gene #1439: 'CALB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CALB2 MUTATED 0 0 3 0 1
CALB2 WILD-TYPE 59 75 71 119 37

Figure S3719.  Get High-res Image Gene #1439: 'CALB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CALB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S14575.  Gene #1439: 'CALB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CALB2 MUTATED 1 2 0 0 1
CALB2 WILD-TYPE 50 74 61 71 94
'CALB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 0.87

Table S14576.  Gene #1439: 'CALB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CALB2 MUTATED 1 1 0 0 0 1 0 1 0
CALB2 WILD-TYPE 68 47 39 16 53 19 21 37 50
'LRRN3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.095

Table S14577.  Gene #1440: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LRRN3 MUTATED 5 2 0 1 0
LRRN3 WILD-TYPE 27 16 46 26 23

Figure S3720.  Get High-res Image Gene #1440: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LRRN3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0832 (Fisher's exact test), Q value = 0.31

Table S14578.  Gene #1440: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LRRN3 MUTATED 5 3 0
LRRN3 WILD-TYPE 38 64 36
'LRRN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S14579.  Gene #1440: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LRRN3 MUTATED 1 5 15
LRRN3 WILD-TYPE 41 168 132

Figure S3721.  Get High-res Image Gene #1440: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LRRN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.96

Table S14580.  Gene #1440: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LRRN3 MUTATED 5 3 4
LRRN3 WILD-TYPE 57 70 71
'LRRN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S14581.  Gene #1440: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LRRN3 MUTATED 4 8 8
LRRN3 WILD-TYPE 66 112 92
'LRRN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S14582.  Gene #1440: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LRRN3 MUTATED 1 2 2 1 3 7 2 1 1
LRRN3 WILD-TYPE 40 24 28 28 36 62 18 13 21
'LRRN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S14583.  Gene #1440: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LRRN3 MUTATED 2 4 6 9
LRRN3 WILD-TYPE 98 68 66 112
'LRRN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S14584.  Gene #1440: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LRRN3 MUTATED 2 3 6 5 5
LRRN3 WILD-TYPE 57 72 68 114 33
'LRRN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S14585.  Gene #1440: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LRRN3 MUTATED 2 3 3 2 9
LRRN3 WILD-TYPE 49 73 58 69 86
'LRRN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S14586.  Gene #1440: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LRRN3 MUTATED 2 2 0 2 2 1 2 4 4
LRRN3 WILD-TYPE 67 46 39 14 51 19 19 34 46
'LRRN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.95

Table S14587.  Gene #1440: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LRRN3 MUTATED 0 0 1 1 1 0
LRRN3 WILD-TYPE 13 16 13 10 10 9
'LRRN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S14588.  Gene #1440: 'LRRN3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LRRN3 MUTATED 0 0 0 0 1 0 1 1 0
LRRN3 WILD-TYPE 11 7 7 9 7 7 10 8 5
'DEK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S14589.  Gene #1441: 'DEK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DEK MUTATED 1 1 4
DEK WILD-TYPE 41 172 143
'DEK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14590.  Gene #1441: 'DEK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DEK MUTATED 1 2 2
DEK WILD-TYPE 61 71 73
'DEK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.25

Table S14591.  Gene #1441: 'DEK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DEK MUTATED 0 1 5
DEK WILD-TYPE 70 119 95
'DEK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.85

Table S14592.  Gene #1441: 'DEK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DEK MUTATED 1 0 0 0 0 4 1 0 0
DEK WILD-TYPE 40 26 30 29 39 65 19 14 22
'DEK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S14593.  Gene #1441: 'DEK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DEK MUTATED 2 2 1 1
DEK WILD-TYPE 98 70 71 120
'DEK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S14594.  Gene #1441: 'DEK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DEK MUTATED 1 2 2 0 1
DEK WILD-TYPE 58 73 72 119 37
'DEK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S14595.  Gene #1441: 'DEK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DEK MUTATED 1 2 1 1 0
DEK WILD-TYPE 50 74 60 70 95
'DEK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S14596.  Gene #1441: 'DEK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DEK MUTATED 2 1 1 0 1 0 0 0 0
DEK WILD-TYPE 67 47 38 16 52 20 21 38 50
'PCDH9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.98

Table S14597.  Gene #1442: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PCDH9 MUTATED 5 2 3 4 3
PCDH9 WILD-TYPE 27 16 43 23 20
'PCDH9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S14598.  Gene #1442: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PCDH9 MUTATED 7 6 4
PCDH9 WILD-TYPE 36 61 32
'PCDH9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.51

Table S14599.  Gene #1442: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PCDH9 MUTATED 4 13 20
PCDH9 WILD-TYPE 38 160 127
'PCDH9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.25

Table S14600.  Gene #1442: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PCDH9 MUTATED 10 3 8
PCDH9 WILD-TYPE 52 70 67
'PCDH9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S14601.  Gene #1442: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PCDH9 MUTATED 3 14 12
PCDH9 WILD-TYPE 67 106 88
'PCDH9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S14602.  Gene #1442: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PCDH9 MUTATED 3 1 2 4 3 8 4 1 3
PCDH9 WILD-TYPE 38 25 28 25 36 61 16 13 19
'PCDH9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S14603.  Gene #1442: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PCDH9 MUTATED 6 9 5 18
PCDH9 WILD-TYPE 94 63 67 103
'PCDH9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.74

Table S14604.  Gene #1442: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PCDH9 MUTATED 4 5 10 13 6
PCDH9 WILD-TYPE 55 70 64 106 32
'PCDH9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S14605.  Gene #1442: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PCDH9 MUTATED 4 10 6 6 10
PCDH9 WILD-TYPE 47 66 55 65 85
'PCDH9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S14606.  Gene #1442: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PCDH9 MUTATED 3 7 6 3 3 2 3 5 4
PCDH9 WILD-TYPE 66 41 33 13 50 18 18 33 46
'PCDH9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S14607.  Gene #1442: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PCDH9 MUTATED 0 1 1 0 2 0
PCDH9 WILD-TYPE 13 15 13 11 9 9
'PCDH9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.991 (Fisher's exact test), Q value = 1

Table S14608.  Gene #1442: 'PCDH9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PCDH9 MUTATED 1 0 0 1 1 0 1 0 0
PCDH9 WILD-TYPE 10 7 7 8 7 7 10 9 5
'LIX1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S14609.  Gene #1443: 'LIX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LIX1 MUTATED 2 0 0 1 0
LIX1 WILD-TYPE 30 18 46 26 23
'LIX1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.79

Table S14610.  Gene #1443: 'LIX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LIX1 MUTATED 2 1 0
LIX1 WILD-TYPE 41 66 36
'LIX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.22

Table S14611.  Gene #1443: 'LIX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LIX1 MUTATED 2 1 6
LIX1 WILD-TYPE 40 172 141

Figure S3722.  Get High-res Image Gene #1443: 'LIX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LIX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S14612.  Gene #1443: 'LIX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LIX1 MUTATED 3 1 2
LIX1 WILD-TYPE 59 72 73
'LIX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S14613.  Gene #1443: 'LIX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LIX1 MUTATED 1 3 4
LIX1 WILD-TYPE 69 117 96
'LIX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.988 (Fisher's exact test), Q value = 1

Table S14614.  Gene #1443: 'LIX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LIX1 MUTATED 1 1 1 0 1 3 0 0 1
LIX1 WILD-TYPE 40 25 29 29 38 66 20 14 21
'LIX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S14615.  Gene #1443: 'LIX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LIX1 MUTATED 1 3 2 3
LIX1 WILD-TYPE 99 69 70 118
'LIX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0332 (Fisher's exact test), Q value = 0.19

Table S14616.  Gene #1443: 'LIX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LIX1 MUTATED 0 1 5 1 2
LIX1 WILD-TYPE 59 74 69 118 36

Figure S3723.  Get High-res Image Gene #1443: 'LIX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LIX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S14617.  Gene #1443: 'LIX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LIX1 MUTATED 0 4 1 0 4
LIX1 WILD-TYPE 51 72 60 71 91
'LIX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0722 (Fisher's exact test), Q value = 0.29

Table S14618.  Gene #1443: 'LIX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LIX1 MUTATED 2 2 0 0 0 2 0 3 0
LIX1 WILD-TYPE 67 46 39 16 53 18 21 35 50
'C3ORF63 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.17

Table S14619.  Gene #1444: 'C3ORF63 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C3ORF63 MUTATED 4 0 0 2 0
C3ORF63 WILD-TYPE 28 18 46 25 23

Figure S3724.  Get High-res Image Gene #1444: 'C3ORF63 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C3ORF63 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S14620.  Gene #1444: 'C3ORF63 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C3ORF63 MUTATED 4 1 1
C3ORF63 WILD-TYPE 39 66 35
'C3ORF63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S14621.  Gene #1444: 'C3ORF63 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C3ORF63 MUTATED 2 6 13
C3ORF63 WILD-TYPE 40 167 134
'C3ORF63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14622.  Gene #1444: 'C3ORF63 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C3ORF63 MUTATED 5 5 6
C3ORF63 WILD-TYPE 57 68 69
'C3ORF63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S14623.  Gene #1444: 'C3ORF63 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C3ORF63 MUTATED 1 8 9
C3ORF63 WILD-TYPE 69 112 91
'C3ORF63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S14624.  Gene #1444: 'C3ORF63 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C3ORF63 MUTATED 2 0 1 3 3 5 1 1 2
C3ORF63 WILD-TYPE 39 26 29 26 36 64 19 13 20
'C3ORF63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S14625.  Gene #1444: 'C3ORF63 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C3ORF63 MUTATED 5 6 4 6
C3ORF63 WILD-TYPE 95 66 68 115
'C3ORF63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0961 (Fisher's exact test), Q value = 0.34

Table S14626.  Gene #1444: 'C3ORF63 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C3ORF63 MUTATED 4 5 6 2 4
C3ORF63 WILD-TYPE 55 70 68 117 34
'C3ORF63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S14627.  Gene #1444: 'C3ORF63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C3ORF63 MUTATED 4 7 3 1 5
C3ORF63 WILD-TYPE 47 69 58 70 90
'C3ORF63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00809 (Fisher's exact test), Q value = 0.084

Table S14628.  Gene #1444: 'C3ORF63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C3ORF63 MUTATED 1 3 2 5 4 2 0 2 1
C3ORF63 WILD-TYPE 68 45 37 11 49 18 21 36 49

Figure S3725.  Get High-res Image Gene #1444: 'C3ORF63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM199X MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14629.  Gene #1445: 'FAM199X MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM199X MUTATED 1 5 4
FAM199X WILD-TYPE 41 168 143
'FAM199X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S14630.  Gene #1445: 'FAM199X MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM199X MUTATED 2 2 4
FAM199X WILD-TYPE 60 71 71
'FAM199X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S14631.  Gene #1445: 'FAM199X MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM199X MUTATED 1 2 5
FAM199X WILD-TYPE 69 118 95
'FAM199X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S14632.  Gene #1445: 'FAM199X MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM199X MUTATED 3 0 0 1 0 2 2 0 0
FAM199X WILD-TYPE 38 26 30 28 39 67 18 14 22
'FAM199X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S14633.  Gene #1445: 'FAM199X MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM199X MUTATED 3 2 3 2
FAM199X WILD-TYPE 97 70 69 119
'FAM199X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S14634.  Gene #1445: 'FAM199X MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM199X MUTATED 2 2 4 1 1
FAM199X WILD-TYPE 57 73 70 118 37
'FAM199X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.097 (Fisher's exact test), Q value = 0.34

Table S14635.  Gene #1445: 'FAM199X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM199X MUTATED 2 3 4 0 1
FAM199X WILD-TYPE 49 73 57 71 94
'FAM199X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00959 (Fisher's exact test), Q value = 0.092

Table S14636.  Gene #1445: 'FAM199X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM199X MUTATED 0 4 0 1 3 0 2 0 0
FAM199X WILD-TYPE 69 44 39 15 50 20 19 38 50

Figure S3726.  Get High-res Image Gene #1445: 'FAM199X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM199X MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S14637.  Gene #1445: 'FAM199X MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FAM199X MUTATED 1 0 0 1 0 1
FAM199X WILD-TYPE 12 16 14 10 11 8
'FAM199X MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S14638.  Gene #1445: 'FAM199X MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FAM199X MUTATED 0 0 1 1 0 1 0 0 0
FAM199X WILD-TYPE 11 7 6 8 8 6 11 9 5
'SKIV2L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0652 (Fisher's exact test), Q value = 0.28

Table S14639.  Gene #1446: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SKIV2L MUTATED 0 1 0 2 0
SKIV2L WILD-TYPE 32 17 46 25 23
'SKIV2L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S14640.  Gene #1446: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SKIV2L MUTATED 2 1 0
SKIV2L WILD-TYPE 41 66 36
'SKIV2L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00785 (Fisher's exact test), Q value = 0.083

Table S14641.  Gene #1446: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SKIV2L MUTATED 2 1 9
SKIV2L WILD-TYPE 40 172 138

Figure S3727.  Get High-res Image Gene #1446: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SKIV2L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S14642.  Gene #1446: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SKIV2L MUTATED 2 2 5
SKIV2L WILD-TYPE 60 71 70
'SKIV2L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.89

Table S14643.  Gene #1446: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SKIV2L MUTATED 4 3 4
SKIV2L WILD-TYPE 66 117 96
'SKIV2L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.74

Table S14644.  Gene #1446: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SKIV2L MUTATED 3 0 1 1 2 1 2 1 0
SKIV2L WILD-TYPE 38 26 29 28 37 68 18 13 22
'SKIV2L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00439 (Fisher's exact test), Q value = 0.061

Table S14645.  Gene #1446: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SKIV2L MUTATED 0 7 2 3
SKIV2L WILD-TYPE 100 65 70 118

Figure S3728.  Get High-res Image Gene #1446: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SKIV2L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S14646.  Gene #1446: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SKIV2L MUTATED 1 3 5 2 1
SKIV2L WILD-TYPE 58 72 69 117 37
'SKIV2L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.29

Table S14647.  Gene #1446: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SKIV2L MUTATED 1 6 3 0 2
SKIV2L WILD-TYPE 50 70 58 71 93
'SKIV2L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S14648.  Gene #1446: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SKIV2L MUTATED 4 1 0 2 0 2 2 1 0
SKIV2L WILD-TYPE 65 47 39 14 53 18 19 37 50

Figure S3729.  Get High-res Image Gene #1446: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SKIV2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S14649.  Gene #1446: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SKIV2L MUTATED 1 1 0 1 1 0
SKIV2L WILD-TYPE 12 15 14 10 10 9
'SKIV2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S14650.  Gene #1446: 'SKIV2L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SKIV2L MUTATED 1 0 1 1 0 1 0 0 0
SKIV2L WILD-TYPE 10 7 6 8 8 6 11 9 5
'TAPBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S14651.  Gene #1447: 'TAPBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TAPBP MUTATED 0 1 2
TAPBP WILD-TYPE 42 172 145
'TAPBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S14652.  Gene #1447: 'TAPBP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TAPBP MUTATED 1 0 2
TAPBP WILD-TYPE 69 120 98
'TAPBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S14653.  Gene #1447: 'TAPBP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TAPBP MUTATED 1 0 0 0 0 2 0 0 0
TAPBP WILD-TYPE 40 26 30 29 39 67 20 14 22
'TAPBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S14654.  Gene #1447: 'TAPBP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TAPBP MUTATED 1 0 0 2
TAPBP WILD-TYPE 99 72 72 119
'TAPBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.095

Table S14655.  Gene #1447: 'TAPBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TAPBP MUTATED 1 0 0 0 2
TAPBP WILD-TYPE 58 75 74 119 36

Figure S3730.  Get High-res Image Gene #1447: 'TAPBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TAPBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S14656.  Gene #1447: 'TAPBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TAPBP MUTATED 1 0 1 0 1
TAPBP WILD-TYPE 50 76 60 71 94
'TAPBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S14657.  Gene #1447: 'TAPBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TAPBP MUTATED 0 0 0 0 1 0 1 1 0
TAPBP WILD-TYPE 69 48 39 16 52 20 20 37 50
'CDHR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S14658.  Gene #1448: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CDHR3 MUTATED 0 0 13
CDHR3 WILD-TYPE 42 173 134

Figure S3731.  Get High-res Image Gene #1448: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDHR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00134 (Fisher's exact test), Q value = 0.03

Table S14659.  Gene #1448: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CDHR3 MUTATED 9 0 4
CDHR3 WILD-TYPE 53 73 71

Figure S3732.  Get High-res Image Gene #1448: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CDHR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0586 (Fisher's exact test), Q value = 0.26

Table S14660.  Gene #1448: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CDHR3 MUTATED 2 2 8
CDHR3 WILD-TYPE 68 118 92
'CDHR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 0.75

Table S14661.  Gene #1448: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CDHR3 MUTATED 2 1 0 1 0 6 1 1 0
CDHR3 WILD-TYPE 39 25 30 28 39 63 19 13 22
'CDHR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.014

Table S14662.  Gene #1448: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CDHR3 MUTATED 0 6 6 1
CDHR3 WILD-TYPE 100 66 66 120

Figure S3733.  Get High-res Image Gene #1448: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CDHR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S14663.  Gene #1448: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CDHR3 MUTATED 1 1 10 1 0
CDHR3 WILD-TYPE 58 74 64 118 38

Figure S3734.  Get High-res Image Gene #1448: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDHR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00667 (Fisher's exact test), Q value = 0.076

Table S14664.  Gene #1448: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CDHR3 MUTATED 0 7 4 0 2
CDHR3 WILD-TYPE 51 69 57 71 93

Figure S3735.  Get High-res Image Gene #1448: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CDHR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 0.14

Table S14665.  Gene #1448: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CDHR3 MUTATED 2 5 0 3 1 0 0 0 2
CDHR3 WILD-TYPE 67 43 39 13 52 20 21 38 48

Figure S3736.  Get High-res Image Gene #1448: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDHR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S14666.  Gene #1448: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CDHR3 MUTATED 0 1 3 0 0 0
CDHR3 WILD-TYPE 13 15 11 11 11 9
'CDHR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.59

Table S14667.  Gene #1448: 'CDHR3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CDHR3 MUTATED 0 0 0 0 2 1 1 0 0
CDHR3 WILD-TYPE 11 7 7 9 6 6 10 9 5
'TJP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S14668.  Gene #1449: 'TJP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TJP1 MUTATED 2 0 0 2 0
TJP1 WILD-TYPE 30 18 46 25 23
'TJP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.095

Table S14669.  Gene #1449: 'TJP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TJP1 MUTATED 4 0 0
TJP1 WILD-TYPE 39 67 36

Figure S3737.  Get High-res Image Gene #1449: 'TJP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TJP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 0.24

Table S14670.  Gene #1449: 'TJP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TJP1 MUTATED 0 6 12
TJP1 WILD-TYPE 42 167 135

Figure S3738.  Get High-res Image Gene #1449: 'TJP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TJP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.8

Table S14671.  Gene #1449: 'TJP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TJP1 MUTATED 4 3 7
TJP1 WILD-TYPE 58 70 68
'TJP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.98

Table S14672.  Gene #1449: 'TJP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TJP1 MUTATED 2 5 6
TJP1 WILD-TYPE 68 115 94
'TJP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.57

Table S14673.  Gene #1449: 'TJP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TJP1 MUTATED 1 0 0 2 3 7 0 0 0
TJP1 WILD-TYPE 40 26 30 27 36 62 20 14 22
'TJP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S14674.  Gene #1449: 'TJP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TJP1 MUTATED 4 6 4 4
TJP1 WILD-TYPE 96 66 68 117
'TJP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S14675.  Gene #1449: 'TJP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TJP1 MUTATED 1 3 10 0 4
TJP1 WILD-TYPE 58 72 64 119 34

Figure S3739.  Get High-res Image Gene #1449: 'TJP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TJP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S14676.  Gene #1449: 'TJP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TJP1 MUTATED 3 5 4 1 4
TJP1 WILD-TYPE 48 71 57 70 91
'TJP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.13

Table S14677.  Gene #1449: 'TJP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TJP1 MUTATED 2 5 1 3 1 1 0 4 0
TJP1 WILD-TYPE 67 43 38 13 52 19 21 34 50

Figure S3740.  Get High-res Image Gene #1449: 'TJP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TJP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S14678.  Gene #1449: 'TJP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TJP1 MUTATED 0 2 0 0 1 0
TJP1 WILD-TYPE 13 14 14 11 10 9
'TJP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.94

Table S14679.  Gene #1449: 'TJP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TJP1 MUTATED 2 0 0 0 0 0 1 0 0
TJP1 WILD-TYPE 9 7 7 9 8 7 10 9 5
'DPPA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.72

Table S14680.  Gene #1450: 'DPPA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DPPA2 MUTATED 0 2 5
DPPA2 WILD-TYPE 42 171 142
'DPPA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.98

Table S14681.  Gene #1450: 'DPPA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DPPA2 MUTATED 2 1 3
DPPA2 WILD-TYPE 60 72 72
'DPPA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0627 (Fisher's exact test), Q value = 0.27

Table S14682.  Gene #1450: 'DPPA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DPPA2 MUTATED 1 0 4
DPPA2 WILD-TYPE 69 120 96
'DPPA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.94

Table S14683.  Gene #1450: 'DPPA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DPPA2 MUTATED 2 0 0 0 0 2 1 0 0
DPPA2 WILD-TYPE 39 26 30 29 39 67 19 14 22
'DPPA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S14684.  Gene #1450: 'DPPA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DPPA2 MUTATED 2 1 3 1
DPPA2 WILD-TYPE 98 71 69 120
'DPPA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S14685.  Gene #1450: 'DPPA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DPPA2 MUTATED 2 1 3 0 1
DPPA2 WILD-TYPE 57 74 71 119 37
'DPPA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S14686.  Gene #1450: 'DPPA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DPPA2 MUTATED 1 4 1 0 1
DPPA2 WILD-TYPE 50 72 60 71 94
'DPPA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.55

Table S14687.  Gene #1450: 'DPPA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DPPA2 MUTATED 2 3 0 1 0 0 0 1 0
DPPA2 WILD-TYPE 67 45 39 15 53 20 21 37 50
'HIST1H4L MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14688.  Gene #1451: 'HIST1H4L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HIST1H4L MUTATED 0 3 3
HIST1H4L WILD-TYPE 42 170 144
'HIST1H4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14689.  Gene #1451: 'HIST1H4L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HIST1H4L MUTATED 1 2 2
HIST1H4L WILD-TYPE 61 71 73
'HIST1H4L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S14690.  Gene #1451: 'HIST1H4L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HIST1H4L MUTATED 0 2 4
HIST1H4L WILD-TYPE 70 118 96
'HIST1H4L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S14691.  Gene #1451: 'HIST1H4L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HIST1H4L MUTATED 1 0 0 0 1 3 1 0 0
HIST1H4L WILD-TYPE 40 26 30 29 38 66 19 14 22
'HIST1H4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S14692.  Gene #1451: 'HIST1H4L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HIST1H4L MUTATED 1 2 2 1
HIST1H4L WILD-TYPE 99 70 70 120
'HIST1H4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0421 (Fisher's exact test), Q value = 0.22

Table S14693.  Gene #1451: 'HIST1H4L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HIST1H4L MUTATED 2 0 3 0 1
HIST1H4L WILD-TYPE 57 75 71 119 37

Figure S3741.  Get High-res Image Gene #1451: 'HIST1H4L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HIST1H4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S14694.  Gene #1451: 'HIST1H4L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HIST1H4L MUTATED 1 2 1 1 1
HIST1H4L WILD-TYPE 50 74 60 70 94
'HIST1H4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S14695.  Gene #1451: 'HIST1H4L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HIST1H4L MUTATED 3 1 0 0 1 0 0 1 0
HIST1H4L WILD-TYPE 66 47 39 16 52 20 21 37 50
'AFF3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S14696.  Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AFF3 MUTATED 4 0 0 3 0
AFF3 WILD-TYPE 28 18 46 24 23

Figure S3742.  Get High-res Image Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AFF3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00495 (Fisher's exact test), Q value = 0.066

Table S14697.  Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AFF3 MUTATED 6 1 0
AFF3 WILD-TYPE 37 66 36

Figure S3743.  Get High-res Image Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'AFF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.013

Table S14698.  Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AFF3 MUTATED 1 3 18
AFF3 WILD-TYPE 41 170 129

Figure S3744.  Get High-res Image Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AFF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.17

Table S14699.  Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AFF3 MUTATED 8 2 2
AFF3 WILD-TYPE 54 71 73

Figure S3745.  Get High-res Image Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'AFF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.98

Table S14700.  Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AFF3 MUTATED 3 8 8
AFF3 WILD-TYPE 67 112 92
'AFF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S14701.  Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AFF3 MUTATED 3 2 3 0 2 5 1 2 1
AFF3 WILD-TYPE 38 24 27 29 37 64 19 12 21
'AFF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.56

Table S14702.  Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AFF3 MUTATED 3 3 7 9
AFF3 WILD-TYPE 97 69 65 112
'AFF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.064 (Fisher's exact test), Q value = 0.27

Table S14703.  Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AFF3 MUTATED 4 4 5 3 6
AFF3 WILD-TYPE 55 71 69 116 32
'AFF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S14704.  Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AFF3 MUTATED 1 5 4 1 10
AFF3 WILD-TYPE 50 71 57 70 85
'AFF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00956 (Fisher's exact test), Q value = 0.092

Table S14705.  Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AFF3 MUTATED 0 7 0 1 2 2 1 4 4
AFF3 WILD-TYPE 69 41 39 15 51 18 20 34 46

Figure S3746.  Get High-res Image Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AFF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S14706.  Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AFF3 MUTATED 0 1 0 0 2 0
AFF3 WILD-TYPE 13 15 14 11 9 9
'AFF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S14707.  Gene #1452: 'AFF3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AFF3 MUTATED 0 0 0 1 0 0 2 0 0
AFF3 WILD-TYPE 11 7 7 8 8 7 9 9 5
'TRAF3IP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00154 (Fisher's exact test), Q value = 0.032

Table S14708.  Gene #1453: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TRAF3IP3 MUTATED 5 0 0 0 0
TRAF3IP3 WILD-TYPE 27 18 46 27 23

Figure S3747.  Get High-res Image Gene #1453: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TRAF3IP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.16

Table S14709.  Gene #1453: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TRAF3IP3 MUTATED 4 0 1
TRAF3IP3 WILD-TYPE 39 67 35

Figure S3748.  Get High-res Image Gene #1453: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TRAF3IP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 0.27

Table S14710.  Gene #1453: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRAF3IP3 MUTATED 2 2 8
TRAF3IP3 WILD-TYPE 40 171 139
'TRAF3IP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S14711.  Gene #1453: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRAF3IP3 MUTATED 3 2 2
TRAF3IP3 WILD-TYPE 59 71 73
'TRAF3IP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.25

Table S14712.  Gene #1453: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRAF3IP3 MUTATED 0 4 7
TRAF3IP3 WILD-TYPE 70 116 93
'TRAF3IP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S14713.  Gene #1453: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRAF3IP3 MUTATED 2 0 0 2 1 5 1 0 0
TRAF3IP3 WILD-TYPE 39 26 30 27 38 64 19 14 22
'TRAF3IP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.93

Table S14714.  Gene #1453: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRAF3IP3 MUTATED 2 2 4 4
TRAF3IP3 WILD-TYPE 98 70 68 117
'TRAF3IP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S14715.  Gene #1453: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRAF3IP3 MUTATED 2 2 3 2 3
TRAF3IP3 WILD-TYPE 57 73 71 117 35
'TRAF3IP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14716.  Gene #1453: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRAF3IP3 MUTATED 2 3 2 2 3
TRAF3IP3 WILD-TYPE 49 73 59 69 92
'TRAF3IP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S14717.  Gene #1453: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRAF3IP3 MUTATED 1 3 1 1 3 0 1 2 0
TRAF3IP3 WILD-TYPE 68 45 38 15 50 20 20 36 50
'TRAF3IP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.71

Table S14718.  Gene #1453: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TRAF3IP3 MUTATED 1 0 0 0 1 1
TRAF3IP3 WILD-TYPE 12 16 14 11 10 8
'TRAF3IP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14719.  Gene #1453: 'TRAF3IP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TRAF3IP3 MUTATED 1 0 0 0 0 0 1 1 0
TRAF3IP3 WILD-TYPE 10 7 7 9 8 7 10 8 5
'CDH24 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0731 (Fisher's exact test), Q value = 0.29

Table S14720.  Gene #1454: 'CDH24 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CDH24 MUTATED 3 0 0 2 0
CDH24 WILD-TYPE 29 18 46 25 23
'CDH24 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S14721.  Gene #1454: 'CDH24 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CDH24 MUTATED 3 2 0
CDH24 WILD-TYPE 40 65 36
'CDH24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.12

Table S14722.  Gene #1454: 'CDH24 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CDH24 MUTATED 0 2 10
CDH24 WILD-TYPE 42 171 137

Figure S3749.  Get High-res Image Gene #1454: 'CDH24 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDH24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S14723.  Gene #1454: 'CDH24 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CDH24 MUTATED 1 0 6
CDH24 WILD-TYPE 61 73 69

Figure S3750.  Get High-res Image Gene #1454: 'CDH24 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CDH24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S14724.  Gene #1454: 'CDH24 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CDH24 MUTATED 3 4 3
CDH24 WILD-TYPE 67 116 97
'CDH24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S14725.  Gene #1454: 'CDH24 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CDH24 MUTATED 0 1 2 1 3 2 0 1 0
CDH24 WILD-TYPE 41 25 28 28 36 67 20 13 22
'CDH24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S14726.  Gene #1454: 'CDH24 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CDH24 MUTATED 1 5 1 5
CDH24 WILD-TYPE 99 67 71 116
'CDH24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.67

Table S14727.  Gene #1454: 'CDH24 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CDH24 MUTATED 0 3 4 3 2
CDH24 WILD-TYPE 59 72 70 116 36
'CDH24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S14728.  Gene #1454: 'CDH24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CDH24 MUTATED 1 5 0 1 5
CDH24 WILD-TYPE 50 71 61 70 90
'CDH24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0385 (Fisher's exact test), Q value = 0.21

Table S14729.  Gene #1454: 'CDH24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CDH24 MUTATED 6 0 1 0 0 1 1 3 0
CDH24 WILD-TYPE 63 48 38 16 53 19 20 35 50

Figure S3751.  Get High-res Image Gene #1454: 'CDH24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TYW3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S14730.  Gene #1455: 'TYW3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TYW3 MUTATED 1 3 2
TYW3 WILD-TYPE 41 170 145
'TYW3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0658 (Fisher's exact test), Q value = 0.28

Table S14731.  Gene #1455: 'TYW3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TYW3 MUTATED 4 2 0
TYW3 WILD-TYPE 58 71 75
'TYW3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S14732.  Gene #1455: 'TYW3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TYW3 MUTATED 0 1 4
TYW3 WILD-TYPE 70 119 96
'TYW3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S14733.  Gene #1455: 'TYW3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TYW3 MUTATED 1 1 0 0 0 1 2 0 0
TYW3 WILD-TYPE 40 25 30 29 39 68 18 14 22
'TYW3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S14734.  Gene #1455: 'TYW3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TYW3 MUTATED 2 1 3 0
TYW3 WILD-TYPE 98 71 69 121
'TYW3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.066 (Fisher's exact test), Q value = 0.28

Table S14735.  Gene #1455: 'TYW3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TYW3 MUTATED 3 1 2 0 0
TYW3 WILD-TYPE 56 74 72 119 38
'TYW3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 0.34

Table S14736.  Gene #1455: 'TYW3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TYW3 MUTATED 1 3 2 0 0
TYW3 WILD-TYPE 50 73 59 71 95
'TYW3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.94

Table S14737.  Gene #1455: 'TYW3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TYW3 MUTATED 2 2 0 0 1 1 0 0 0
TYW3 WILD-TYPE 67 46 39 16 52 19 21 38 50
'TYW3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S14738.  Gene #1455: 'TYW3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TYW3 MUTATED 0 2 1 1 0 0
TYW3 WILD-TYPE 13 14 13 10 11 9
'TYW3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S14739.  Gene #1455: 'TYW3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TYW3 MUTATED 1 1 0 0 1 0 1 0 0
TYW3 WILD-TYPE 10 6 7 9 7 7 10 9 5
'ZNF197 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00093 (Fisher's exact test), Q value = 0.024

Table S14740.  Gene #1456: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF197 MUTATED 0 0 9
ZNF197 WILD-TYPE 42 173 138

Figure S3752.  Get High-res Image Gene #1456: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF197 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S14741.  Gene #1456: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF197 MUTATED 3 0 4
ZNF197 WILD-TYPE 59 73 71
'ZNF197 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S14742.  Gene #1456: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF197 MUTATED 2 2 2
ZNF197 WILD-TYPE 68 118 98
'ZNF197 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.98

Table S14743.  Gene #1456: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF197 MUTATED 0 1 1 0 1 2 0 1 0
ZNF197 WILD-TYPE 41 25 29 29 38 67 20 13 22
'ZNF197 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0018 (Fisher's exact test), Q value = 0.035

Table S14744.  Gene #1456: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF197 MUTATED 0 6 0 3
ZNF197 WILD-TYPE 100 66 72 118

Figure S3753.  Get High-res Image Gene #1456: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF197 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S14745.  Gene #1456: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF197 MUTATED 0 0 6 2 1
ZNF197 WILD-TYPE 59 75 68 117 37

Figure S3754.  Get High-res Image Gene #1456: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF197 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.89

Table S14746.  Gene #1456: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF197 MUTATED 0 3 1 1 4
ZNF197 WILD-TYPE 51 73 60 70 91
'ZNF197 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00198 (Fisher's exact test), Q value = 0.038

Table S14747.  Gene #1456: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF197 MUTATED 1 0 0 3 0 2 0 2 1
ZNF197 WILD-TYPE 68 48 39 13 53 18 21 36 49

Figure S3755.  Get High-res Image Gene #1456: 'ZNF197 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ESCO1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00169 (Fisher's exact test), Q value = 0.034

Table S14748.  Gene #1457: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ESCO1 MUTATED 5 0 0 0 0
ESCO1 WILD-TYPE 27 18 46 27 23

Figure S3756.  Get High-res Image Gene #1457: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ESCO1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S14749.  Gene #1457: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ESCO1 MUTATED 4 0 1
ESCO1 WILD-TYPE 39 67 35

Figure S3757.  Get High-res Image Gene #1457: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ESCO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00285 (Fisher's exact test), Q value = 0.046

Table S14750.  Gene #1457: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ESCO1 MUTATED 1 1 11
ESCO1 WILD-TYPE 41 172 136

Figure S3758.  Get High-res Image Gene #1457: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ESCO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S14751.  Gene #1457: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ESCO1 MUTATED 4 1 4
ESCO1 WILD-TYPE 58 72 71
'ESCO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.83

Table S14752.  Gene #1457: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ESCO1 MUTATED 1 6 4
ESCO1 WILD-TYPE 69 114 96
'ESCO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.94

Table S14753.  Gene #1457: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ESCO1 MUTATED 1 2 0 1 3 2 0 1 1
ESCO1 WILD-TYPE 40 24 30 28 36 67 20 13 21
'ESCO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S14754.  Gene #1457: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ESCO1 MUTATED 1 4 2 6
ESCO1 WILD-TYPE 99 68 70 115
'ESCO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S14755.  Gene #1457: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ESCO1 MUTATED 1 2 4 2 4
ESCO1 WILD-TYPE 58 73 70 117 34
'ESCO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S14756.  Gene #1457: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ESCO1 MUTATED 0 4 2 1 6
ESCO1 WILD-TYPE 51 72 59 70 89
'ESCO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S14757.  Gene #1457: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ESCO1 MUTATED 2 2 0 2 1 0 0 4 2
ESCO1 WILD-TYPE 67 46 39 14 52 20 21 34 48
'ESCO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.17

Table S14758.  Gene #1457: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ESCO1 MUTATED 0 0 1 0 3 0
ESCO1 WILD-TYPE 13 16 13 11 8 9

Figure S3759.  Get High-res Image Gene #1457: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ESCO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S14759.  Gene #1457: 'ESCO1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ESCO1 MUTATED 0 0 0 2 1 0 1 0 0
ESCO1 WILD-TYPE 11 7 7 7 7 7 10 9 5
'NT5C3L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.56

Table S14760.  Gene #1458: 'NT5C3L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NT5C3L MUTATED 0 1 4
NT5C3L WILD-TYPE 42 172 143
'NT5C3L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.92

Table S14761.  Gene #1458: 'NT5C3L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NT5C3L MUTATED 0 1 2
NT5C3L WILD-TYPE 70 119 98
'NT5C3L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S14762.  Gene #1458: 'NT5C3L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NT5C3L MUTATED 1 0 1 0 0 1 0 0 0
NT5C3L WILD-TYPE 40 26 29 29 39 68 20 14 22
'NT5C3L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S14763.  Gene #1458: 'NT5C3L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NT5C3L MUTATED 0 1 1 3
NT5C3L WILD-TYPE 100 71 71 118
'NT5C3L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00578 (Fisher's exact test), Q value = 0.072

Table S14764.  Gene #1458: 'NT5C3L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NT5C3L MUTATED 1 1 0 0 3
NT5C3L WILD-TYPE 58 74 74 119 35

Figure S3760.  Get High-res Image Gene #1458: 'NT5C3L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NT5C3L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S14765.  Gene #1458: 'NT5C3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NT5C3L MUTATED 1 1 0 0 3
NT5C3L WILD-TYPE 50 75 61 71 92
'NT5C3L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S14766.  Gene #1458: 'NT5C3L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NT5C3L MUTATED 0 1 0 0 1 0 1 2 0
NT5C3L WILD-TYPE 69 47 39 16 52 20 20 36 50
'KIAA1919 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00095 (Fisher's exact test), Q value = 0.024

Table S14767.  Gene #1459: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA1919 MUTATED 0 0 9
KIAA1919 WILD-TYPE 42 173 138

Figure S3761.  Get High-res Image Gene #1459: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA1919 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0831 (Fisher's exact test), Q value = 0.31

Table S14768.  Gene #1459: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA1919 MUTATED 4 0 3
KIAA1919 WILD-TYPE 58 73 72
'KIAA1919 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S14769.  Gene #1459: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA1919 MUTATED 1 3 5
KIAA1919 WILD-TYPE 69 117 95
'KIAA1919 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S14770.  Gene #1459: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA1919 MUTATED 1 1 1 1 0 4 1 0 0
KIAA1919 WILD-TYPE 40 25 29 28 39 65 19 14 22
'KIAA1919 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 0.24

Table S14771.  Gene #1459: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA1919 MUTATED 0 3 4 2
KIAA1919 WILD-TYPE 100 69 68 119
'KIAA1919 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S14772.  Gene #1459: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA1919 MUTATED 1 2 4 1 1
KIAA1919 WILD-TYPE 58 73 70 118 37
'KIAA1919 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S14773.  Gene #1459: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA1919 MUTATED 1 4 1 0 3
KIAA1919 WILD-TYPE 50 72 60 71 92
'KIAA1919 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0972 (Fisher's exact test), Q value = 0.34

Table S14774.  Gene #1459: 'KIAA1919 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA1919 MUTATED 1 3 0 2 0 1 0 1 1
KIAA1919 WILD-TYPE 68 45 39 14 53 19 21 37 49
'EPB41L4B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S14775.  Gene #1460: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EPB41L4B MUTATED 2 0 0 1 0
EPB41L4B WILD-TYPE 30 18 46 26 23
'EPB41L4B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S14776.  Gene #1460: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EPB41L4B MUTATED 2 0 1
EPB41L4B WILD-TYPE 41 67 35
'EPB41L4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.017

Table S14777.  Gene #1460: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EPB41L4B MUTATED 1 0 10
EPB41L4B WILD-TYPE 41 173 137

Figure S3762.  Get High-res Image Gene #1460: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EPB41L4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S14778.  Gene #1460: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EPB41L4B MUTATED 1 2 4
EPB41L4B WILD-TYPE 61 71 71
'EPB41L4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S14779.  Gene #1460: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EPB41L4B MUTATED 1 5 2
EPB41L4B WILD-TYPE 69 115 98
'EPB41L4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.6

Table S14780.  Gene #1460: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EPB41L4B MUTATED 0 1 2 1 0 2 2 0 0
EPB41L4B WILD-TYPE 41 25 28 28 39 67 18 14 22
'EPB41L4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S14781.  Gene #1460: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EPB41L4B MUTATED 2 4 0 6
EPB41L4B WILD-TYPE 98 68 72 115
'EPB41L4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0361 (Fisher's exact test), Q value = 0.2

Table S14782.  Gene #1460: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EPB41L4B MUTATED 0 2 4 2 4
EPB41L4B WILD-TYPE 59 73 70 117 34

Figure S3763.  Get High-res Image Gene #1460: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EPB41L4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S14783.  Gene #1460: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EPB41L4B MUTATED 2 4 0 1 4
EPB41L4B WILD-TYPE 49 72 61 70 91
'EPB41L4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S14784.  Gene #1460: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EPB41L4B MUTATED 1 1 1 2 2 0 0 3 1
EPB41L4B WILD-TYPE 68 47 38 14 51 20 21 35 49
'SRL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 0.28

Table S14785.  Gene #1461: 'SRL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SRL MUTATED 0 3 9
SRL WILD-TYPE 42 170 138
'SRL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S14786.  Gene #1461: 'SRL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SRL MUTATED 3 2 6
SRL WILD-TYPE 59 71 69
'SRL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S14787.  Gene #1461: 'SRL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SRL MUTATED 0 4 6
SRL WILD-TYPE 70 116 94
'SRL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S14788.  Gene #1461: 'SRL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SRL MUTATED 1 0 0 0 0 5 2 1 1
SRL WILD-TYPE 40 26 30 29 39 64 18 13 21
'SRL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0927 (Fisher's exact test), Q value = 0.33

Table S14789.  Gene #1461: 'SRL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SRL MUTATED 2 6 2 2
SRL WILD-TYPE 98 66 70 119
'SRL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S14790.  Gene #1461: 'SRL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SRL MUTATED 3 2 5 1 1
SRL WILD-TYPE 56 73 69 118 37
'SRL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.37

Table S14791.  Gene #1461: 'SRL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SRL MUTATED 3 4 2 2 0
SRL WILD-TYPE 48 72 59 69 95
'SRL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0199 (Fisher's exact test), Q value = 0.14

Table S14792.  Gene #1461: 'SRL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SRL MUTATED 1 2 0 2 4 2 0 0 0
SRL WILD-TYPE 68 46 39 14 49 18 21 38 50

Figure S3764.  Get High-res Image Gene #1461: 'SRL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S14793.  Gene #1461: 'SRL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SRL MUTATED 0 1 1 1 0 0
SRL WILD-TYPE 13 15 13 10 11 9
'SRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S14794.  Gene #1461: 'SRL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SRL MUTATED 0 1 0 0 0 0 0 1 1
SRL WILD-TYPE 11 6 7 9 8 7 11 8 4
'SKIV2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S14795.  Gene #1462: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SKIV2L2 MUTATED 0 4 7
SKIV2L2 WILD-TYPE 42 169 140
'SKIV2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S14796.  Gene #1462: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SKIV2L2 MUTATED 2 3 4
SKIV2L2 WILD-TYPE 60 70 71
'SKIV2L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S14797.  Gene #1462: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SKIV2L2 MUTATED 3 3 4
SKIV2L2 WILD-TYPE 67 117 96
'SKIV2L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S14798.  Gene #1462: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SKIV2L2 MUTATED 1 0 0 0 1 5 1 1 1
SKIV2L2 WILD-TYPE 40 26 30 29 38 64 19 13 21
'SKIV2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S14799.  Gene #1462: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SKIV2L2 MUTATED 3 2 4 2
SKIV2L2 WILD-TYPE 97 70 68 119
'SKIV2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.11

Table S14800.  Gene #1462: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SKIV2L2 MUTATED 3 1 5 0 2
SKIV2L2 WILD-TYPE 56 74 69 119 36

Figure S3765.  Get High-res Image Gene #1462: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SKIV2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S14801.  Gene #1462: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SKIV2L2 MUTATED 2 3 1 2 2
SKIV2L2 WILD-TYPE 49 73 60 69 93
'SKIV2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S14802.  Gene #1462: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SKIV2L2 MUTATED 0 2 1 1 3 1 0 2 0
SKIV2L2 WILD-TYPE 69 46 38 15 50 19 21 36 50
'SKIV2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S14803.  Gene #1462: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SKIV2L2 MUTATED 1 0 1 1 2 0
SKIV2L2 WILD-TYPE 12 16 13 10 9 9
'SKIV2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S14804.  Gene #1462: 'SKIV2L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SKIV2L2 MUTATED 0 0 0 1 1 0 2 0 1
SKIV2L2 WILD-TYPE 11 7 7 8 7 7 9 9 4
'KBTBD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S14805.  Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KBTBD4 MUTATED 2 0 5
KBTBD4 WILD-TYPE 40 173 142

Figure S3766.  Get High-res Image Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KBTBD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.19

Table S14806.  Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KBTBD4 MUTATED 1 0 5
KBTBD4 WILD-TYPE 61 73 70

Figure S3767.  Get High-res Image Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KBTBD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14807.  Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KBTBD4 MUTATED 1 3 2
KBTBD4 WILD-TYPE 69 117 98
'KBTBD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.73

Table S14808.  Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KBTBD4 MUTATED 0 0 0 1 1 2 2 0 0
KBTBD4 WILD-TYPE 41 26 30 28 38 67 18 14 22
'KBTBD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.23

Table S14809.  Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KBTBD4 MUTATED 0 3 3 1
KBTBD4 WILD-TYPE 100 69 69 120

Figure S3768.  Get High-res Image Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KBTBD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00965 (Fisher's exact test), Q value = 0.093

Table S14810.  Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KBTBD4 MUTATED 0 1 5 0 1
KBTBD4 WILD-TYPE 59 74 69 119 37

Figure S3769.  Get High-res Image Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KBTBD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.13

Table S14811.  Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KBTBD4 MUTATED 1 5 0 1 0
KBTBD4 WILD-TYPE 50 71 61 70 95

Figure S3770.  Get High-res Image Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KBTBD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00953 (Fisher's exact test), Q value = 0.092

Table S14812.  Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KBTBD4 MUTATED 1 1 0 3 1 1 0 0 0
KBTBD4 WILD-TYPE 68 47 39 13 52 19 21 38 50

Figure S3771.  Get High-res Image Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KBTBD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.17

Table S14813.  Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KBTBD4 MUTATED 0 0 1 0 3 0
KBTBD4 WILD-TYPE 13 16 13 11 8 9

Figure S3772.  Get High-res Image Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KBTBD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.92

Table S14814.  Gene #1463: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KBTBD4 MUTATED 0 0 0 1 1 0 2 0 0
KBTBD4 WILD-TYPE 11 7 7 8 7 7 9 9 5
'OLFML1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S14815.  Gene #1464: 'OLFML1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OLFML1 MUTATED 3 0 2 2 0
OLFML1 WILD-TYPE 29 18 44 25 23
'OLFML1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S14816.  Gene #1464: 'OLFML1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OLFML1 MUTATED 4 3 0
OLFML1 WILD-TYPE 39 64 36
'OLFML1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.099

Table S14817.  Gene #1464: 'OLFML1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OLFML1 MUTATED 1 1 9
OLFML1 WILD-TYPE 41 172 138

Figure S3773.  Get High-res Image Gene #1464: 'OLFML1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OLFML1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.98

Table S14818.  Gene #1464: 'OLFML1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OLFML1 MUTATED 2 1 1
OLFML1 WILD-TYPE 60 72 74
'OLFML1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.37

Table S14819.  Gene #1464: 'OLFML1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OLFML1 MUTATED 0 6 2
OLFML1 WILD-TYPE 70 114 98
'OLFML1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.54

Table S14820.  Gene #1464: 'OLFML1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OLFML1 MUTATED 1 1 1 1 3 0 0 1 0
OLFML1 WILD-TYPE 40 25 29 28 36 69 20 13 22
'OLFML1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0709 (Fisher's exact test), Q value = 0.29

Table S14821.  Gene #1464: 'OLFML1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OLFML1 MUTATED 1 1 1 8
OLFML1 WILD-TYPE 99 71 71 113
'OLFML1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S14822.  Gene #1464: 'OLFML1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OLFML1 MUTATED 1 1 1 4 4
OLFML1 WILD-TYPE 58 74 73 115 34
'OLFML1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.15

Table S14823.  Gene #1464: 'OLFML1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OLFML1 MUTATED 1 1 1 0 8
OLFML1 WILD-TYPE 50 75 60 71 87

Figure S3774.  Get High-res Image Gene #1464: 'OLFML1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OLFML1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S14824.  Gene #1464: 'OLFML1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OLFML1 MUTATED 0 1 2 0 1 1 1 4 1
OLFML1 WILD-TYPE 69 47 37 16 52 19 20 34 49
'C7ORF60 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S14825.  Gene #1465: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C7ORF60 MUTATED 2 1 3
C7ORF60 WILD-TYPE 40 172 144
'C7ORF60 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S14826.  Gene #1465: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C7ORF60 MUTATED 3 2 1
C7ORF60 WILD-TYPE 59 71 74
'C7ORF60 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S14827.  Gene #1465: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C7ORF60 MUTATED 1 2 3
C7ORF60 WILD-TYPE 69 118 97
'C7ORF60 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.12

Table S14828.  Gene #1465: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C7ORF60 MUTATED 1 0 0 0 0 2 0 3 0
C7ORF60 WILD-TYPE 40 26 30 29 39 67 20 11 22

Figure S3775.  Get High-res Image Gene #1465: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'C7ORF60 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S14829.  Gene #1465: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C7ORF60 MUTATED 2 2 2 0
C7ORF60 WILD-TYPE 98 70 70 121
'C7ORF60 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S14830.  Gene #1465: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C7ORF60 MUTATED 1 3 2 0 0
C7ORF60 WILD-TYPE 58 72 72 119 38
'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S14831.  Gene #1465: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C7ORF60 MUTATED 2 2 1 0 1
C7ORF60 WILD-TYPE 49 74 60 71 94
'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S14832.  Gene #1465: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C7ORF60 MUTATED 1 0 2 0 1 1 0 0 1
C7ORF60 WILD-TYPE 68 48 37 16 52 19 21 38 49
'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14833.  Gene #1465: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C7ORF60 MUTATED 1 1 1 0 0 0
C7ORF60 WILD-TYPE 12 15 13 11 11 9
'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S14834.  Gene #1465: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C7ORF60 MUTATED 0 1 0 1 1 0 0 0 0
C7ORF60 WILD-TYPE 11 6 7 8 7 7 11 9 5
'IDE MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14835.  Gene #1466: 'IDE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IDE MUTATED 1 0 1 1 1
IDE WILD-TYPE 31 18 45 26 22
'IDE MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S14836.  Gene #1466: 'IDE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IDE MUTATED 0 2 2
IDE WILD-TYPE 43 65 34
'IDE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S14837.  Gene #1466: 'IDE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IDE MUTATED 0 5 5
IDE WILD-TYPE 42 168 142
'IDE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S14838.  Gene #1466: 'IDE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IDE MUTATED 0 4 2
IDE WILD-TYPE 62 69 73
'IDE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S14839.  Gene #1466: 'IDE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IDE MUTATED 1 6 1
IDE WILD-TYPE 69 114 99
'IDE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.038 (Fisher's exact test), Q value = 0.21

Table S14840.  Gene #1466: 'IDE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IDE MUTATED 0 0 1 3 3 0 0 0 1
IDE WILD-TYPE 41 26 29 26 36 69 20 14 21

Figure S3776.  Get High-res Image Gene #1466: 'IDE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'IDE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S14841.  Gene #1466: 'IDE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IDE MUTATED 2 2 2 4
IDE WILD-TYPE 98 70 70 117
'IDE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S14842.  Gene #1466: 'IDE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IDE MUTATED 1 3 2 4 0
IDE WILD-TYPE 58 72 72 115 38
'IDE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S14843.  Gene #1466: 'IDE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IDE MUTATED 2 2 1 1 4
IDE WILD-TYPE 49 74 60 70 91
'IDE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S14844.  Gene #1466: 'IDE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IDE MUTATED 2 2 0 0 2 1 0 1 2
IDE WILD-TYPE 67 46 39 16 51 19 21 37 48
'C1ORF124 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 0.34

Table S14845.  Gene #1467: 'C1ORF124 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C1ORF124 MUTATED 3 0 0 1 0
C1ORF124 WILD-TYPE 29 18 46 26 23
'C1ORF124 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.095

Table S14846.  Gene #1467: 'C1ORF124 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C1ORF124 MUTATED 4 0 0
C1ORF124 WILD-TYPE 39 67 36

Figure S3777.  Get High-res Image Gene #1467: 'C1ORF124 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'C1ORF124 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0393 (Fisher's exact test), Q value = 0.21

Table S14847.  Gene #1467: 'C1ORF124 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C1ORF124 MUTATED 0 1 7
C1ORF124 WILD-TYPE 42 172 140

Figure S3778.  Get High-res Image Gene #1467: 'C1ORF124 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C1ORF124 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.98

Table S14848.  Gene #1467: 'C1ORF124 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C1ORF124 MUTATED 2 1 1
C1ORF124 WILD-TYPE 60 72 74
'C1ORF124 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 0.24

Table S14849.  Gene #1467: 'C1ORF124 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C1ORF124 MUTATED 0 2 6
C1ORF124 WILD-TYPE 70 118 94
'C1ORF124 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S14850.  Gene #1467: 'C1ORF124 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C1ORF124 MUTATED 0 0 1 1 0 6 0 0 0
C1ORF124 WILD-TYPE 41 26 29 28 39 63 20 14 22
'C1ORF124 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S14851.  Gene #1467: 'C1ORF124 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C1ORF124 MUTATED 1 1 2 4
C1ORF124 WILD-TYPE 99 71 70 117
'C1ORF124 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0474 (Fisher's exact test), Q value = 0.23

Table S14852.  Gene #1467: 'C1ORF124 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C1ORF124 MUTATED 0 1 3 1 3
C1ORF124 WILD-TYPE 59 74 71 118 35

Figure S3779.  Get High-res Image Gene #1467: 'C1ORF124 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C1ORF124 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.75

Table S14853.  Gene #1467: 'C1ORF124 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C1ORF124 MUTATED 0 3 1 0 2
C1ORF124 WILD-TYPE 51 73 60 71 93
'C1ORF124 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S14854.  Gene #1467: 'C1ORF124 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C1ORF124 MUTATED 0 3 0 0 1 0 1 1 0
C1ORF124 WILD-TYPE 69 45 39 16 52 20 20 37 50
'PIGK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S14855.  Gene #1468: 'PIGK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PIGK MUTATED 2 0 0 1 0
PIGK WILD-TYPE 30 18 46 26 23
'PIGK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.039 (Fisher's exact test), Q value = 0.21

Table S14856.  Gene #1468: 'PIGK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PIGK MUTATED 3 0 0
PIGK WILD-TYPE 40 67 36

Figure S3780.  Get High-res Image Gene #1468: 'PIGK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PIGK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.52

Table S14857.  Gene #1468: 'PIGK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PIGK MUTATED 0 3 7
PIGK WILD-TYPE 42 170 140
'PIGK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S14858.  Gene #1468: 'PIGK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PIGK MUTATED 1 3 3
PIGK WILD-TYPE 61 70 72
'PIGK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S14859.  Gene #1468: 'PIGK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PIGK MUTATED 1 2 3
PIGK WILD-TYPE 69 118 97
'PIGK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.988 (Fisher's exact test), Q value = 1

Table S14860.  Gene #1468: 'PIGK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PIGK MUTATED 1 0 1 0 1 3 0 0 0
PIGK WILD-TYPE 40 26 29 29 38 66 20 14 22
'PIGK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S14861.  Gene #1468: 'PIGK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PIGK MUTATED 2 4 1 3
PIGK WILD-TYPE 98 68 71 118
'PIGK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00622 (Fisher's exact test), Q value = 0.074

Table S14862.  Gene #1468: 'PIGK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PIGK MUTATED 0 4 3 0 3
PIGK WILD-TYPE 59 71 71 119 35

Figure S3781.  Get High-res Image Gene #1468: 'PIGK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIGK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S14863.  Gene #1468: 'PIGK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PIGK MUTATED 2 3 1 1 3
PIGK WILD-TYPE 49 73 60 70 92
'PIGK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S14864.  Gene #1468: 'PIGK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PIGK MUTATED 3 1 1 1 0 1 0 3 0
PIGK WILD-TYPE 66 47 38 15 53 19 21 35 50
'TRIB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0814 (Fisher's exact test), Q value = 0.31

Table S14865.  Gene #1469: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRIB1 MUTATED 0 1 6
TRIB1 WILD-TYPE 42 172 141
'TRIB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.98

Table S14866.  Gene #1469: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRIB1 MUTATED 2 1 3
TRIB1 WILD-TYPE 60 72 72
'TRIB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.98

Table S14867.  Gene #1469: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRIB1 MUTATED 0 2 2
TRIB1 WILD-TYPE 70 118 98
'TRIB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S14868.  Gene #1469: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRIB1 MUTATED 0 0 0 0 1 2 1 0 0
TRIB1 WILD-TYPE 41 26 30 29 38 67 19 14 22
'TRIB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.63

Table S14869.  Gene #1469: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRIB1 MUTATED 1 3 2 1
TRIB1 WILD-TYPE 99 69 70 120
'TRIB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.01 (Fisher's exact test), Q value = 0.094

Table S14870.  Gene #1469: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRIB1 MUTATED 0 1 5 0 1
TRIB1 WILD-TYPE 59 74 69 119 37

Figure S3782.  Get High-res Image Gene #1469: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRIB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 0.21

Table S14871.  Gene #1469: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRIB1 MUTATED 0 5 1 0 1
TRIB1 WILD-TYPE 51 71 60 71 94

Figure S3783.  Get High-res Image Gene #1469: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TRIB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.93

Table S14872.  Gene #1469: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRIB1 MUTATED 2 0 1 1 2 0 0 1 0
TRIB1 WILD-TYPE 67 48 38 15 51 20 21 37 50
'TRIB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S14873.  Gene #1469: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TRIB1 MUTATED 1 0 1 0 1 0
TRIB1 WILD-TYPE 12 16 13 11 10 9
'TRIB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S14874.  Gene #1469: 'TRIB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TRIB1 MUTATED 0 0 0 0 1 1 0 1 0
TRIB1 WILD-TYPE 11 7 7 9 7 6 11 8 5
'MYST3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.14

Table S14875.  Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MYST3 MUTATED 6 0 1 2 0
MYST3 WILD-TYPE 26 18 45 25 23

Figure S3784.  Get High-res Image Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MYST3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00618 (Fisher's exact test), Q value = 0.074

Table S14876.  Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MYST3 MUTATED 7 2 0
MYST3 WILD-TYPE 36 65 36

Figure S3785.  Get High-res Image Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MYST3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.16

Table S14877.  Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MYST3 MUTATED 2 6 16
MYST3 WILD-TYPE 40 167 131

Figure S3786.  Get High-res Image Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MYST3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S14878.  Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MYST3 MUTATED 5 4 6
MYST3 WILD-TYPE 57 69 69
'MYST3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S14879.  Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MYST3 MUTATED 2 9 10
MYST3 WILD-TYPE 68 111 90
'MYST3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S14880.  Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MYST3 MUTATED 4 2 2 4 1 6 2 0 0
MYST3 WILD-TYPE 37 24 28 25 38 63 18 14 22
'MYST3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S14881.  Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MYST3 MUTATED 3 9 4 8
MYST3 WILD-TYPE 97 63 68 113
'MYST3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.17

Table S14882.  Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MYST3 MUTATED 3 4 8 3 6
MYST3 WILD-TYPE 56 71 66 116 32

Figure S3787.  Get High-res Image Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYST3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S14883.  Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MYST3 MUTATED 0 8 3 3 7
MYST3 WILD-TYPE 51 68 58 68 88
'MYST3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00233 (Fisher's exact test), Q value = 0.041

Table S14884.  Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MYST3 MUTATED 3 3 2 6 0 1 1 3 2
MYST3 WILD-TYPE 66 45 37 10 53 19 20 35 48

Figure S3788.  Get High-res Image Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MYST3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.95

Table S14885.  Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MYST3 MUTATED 0 1 1 1 2 0
MYST3 WILD-TYPE 13 15 13 10 9 9
'MYST3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.64

Table S14886.  Gene #1470: 'MYST3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MYST3 MUTATED 0 0 1 2 1 1 0 0 0
MYST3 WILD-TYPE 11 7 6 7 7 6 11 9 5
'KLF12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 0.33

Table S14887.  Gene #1471: 'KLF12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KLF12 MUTATED 1 0 2
KLF12 WILD-TYPE 41 173 145
'KLF12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14888.  Gene #1471: 'KLF12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KLF12 MUTATED 1 1 0 1
KLF12 WILD-TYPE 99 71 72 120
'KLF12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.46

Table S14889.  Gene #1471: 'KLF12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KLF12 MUTATED 1 0 1 0 1
KLF12 WILD-TYPE 58 75 73 119 37
'KLF12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S14890.  Gene #1471: 'KLF12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KLF12 MUTATED 1 1 0 0 1
KLF12 WILD-TYPE 50 75 61 71 94
'KLF12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.9

Table S14891.  Gene #1471: 'KLF12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KLF12 MUTATED 1 0 0 0 1 0 1 0 0
KLF12 WILD-TYPE 68 48 39 16 52 20 20 38 50
'APLP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.54

Table S14892.  Gene #1472: 'APLP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
APLP1 MUTATED 5 0 2 1 1
APLP1 WILD-TYPE 27 18 44 26 22
'APLP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S14893.  Gene #1472: 'APLP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
APLP1 MUTATED 6 1 2
APLP1 WILD-TYPE 37 66 34

Figure S3789.  Get High-res Image Gene #1472: 'APLP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'APLP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.25

Table S14894.  Gene #1472: 'APLP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
APLP1 MUTATED 0 5 11
APLP1 WILD-TYPE 42 168 136
'APLP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S14895.  Gene #1472: 'APLP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
APLP1 MUTATED 2 2 4
APLP1 WILD-TYPE 60 71 71
'APLP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S14896.  Gene #1472: 'APLP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
APLP1 MUTATED 3 5 3
APLP1 WILD-TYPE 67 115 97
'APLP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S14897.  Gene #1472: 'APLP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
APLP1 MUTATED 2 0 1 1 3 3 1 0 0
APLP1 WILD-TYPE 39 26 29 28 36 66 19 14 22
'APLP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0497 (Fisher's exact test), Q value = 0.24

Table S14898.  Gene #1472: 'APLP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
APLP1 MUTATED 3 6 0 7
APLP1 WILD-TYPE 97 66 72 114

Figure S3790.  Get High-res Image Gene #1472: 'APLP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'APLP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0195 (Fisher's exact test), Q value = 0.14

Table S14899.  Gene #1472: 'APLP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
APLP1 MUTATED 1 2 4 3 6
APLP1 WILD-TYPE 58 73 70 116 32

Figure S3791.  Get High-res Image Gene #1472: 'APLP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'APLP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S14900.  Gene #1472: 'APLP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
APLP1 MUTATED 2 2 1 2 8
APLP1 WILD-TYPE 49 74 60 69 87
'APLP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.55

Table S14901.  Gene #1472: 'APLP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
APLP1 MUTATED 1 1 2 1 2 1 1 5 1
APLP1 WILD-TYPE 68 47 37 15 51 19 20 33 49
'SPARCL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0542 (Fisher's exact test), Q value = 0.25

Table S14902.  Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SPARCL1 MUTATED 3 0 0 0 0
SPARCL1 WILD-TYPE 29 18 46 27 23
'SPARCL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0398 (Fisher's exact test), Q value = 0.21

Table S14903.  Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SPARCL1 MUTATED 3 0 0
SPARCL1 WILD-TYPE 40 67 36

Figure S3792.  Get High-res Image Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SPARCL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S14904.  Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SPARCL1 MUTATED 0 0 14
SPARCL1 WILD-TYPE 42 173 133

Figure S3793.  Get High-res Image Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SPARCL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.15

Table S14905.  Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SPARCL1 MUTATED 5 0 6
SPARCL1 WILD-TYPE 57 73 69

Figure S3794.  Get High-res Image Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SPARCL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S14906.  Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SPARCL1 MUTATED 2 3 6
SPARCL1 WILD-TYPE 68 117 94
'SPARCL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S14907.  Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SPARCL1 MUTATED 2 3 0 0 1 5 0 0 0
SPARCL1 WILD-TYPE 39 23 30 29 38 64 20 14 22
'SPARCL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00761 (Fisher's exact test), Q value = 0.082

Table S14908.  Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SPARCL1 MUTATED 0 7 3 4
SPARCL1 WILD-TYPE 100 65 69 117

Figure S3795.  Get High-res Image Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SPARCL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.16

Table S14909.  Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SPARCL1 MUTATED 1 1 7 2 3
SPARCL1 WILD-TYPE 58 74 67 117 35

Figure S3796.  Get High-res Image Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SPARCL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0773 (Fisher's exact test), Q value = 0.3

Table S14910.  Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SPARCL1 MUTATED 0 6 1 1 6
SPARCL1 WILD-TYPE 51 70 60 70 89
'SPARCL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0231 (Fisher's exact test), Q value = 0.16

Table S14911.  Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SPARCL1 MUTATED 2 2 0 3 0 1 0 4 2
SPARCL1 WILD-TYPE 67 46 39 13 53 19 21 34 48

Figure S3797.  Get High-res Image Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SPARCL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.16

Table S14912.  Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SPARCL1 MUTATED 0 0 2 0 3 0
SPARCL1 WILD-TYPE 13 16 12 11 8 9

Figure S3798.  Get High-res Image Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SPARCL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S14913.  Gene #1473: 'SPARCL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SPARCL1 MUTATED 0 0 0 2 0 0 2 0 1
SPARCL1 WILD-TYPE 11 7 7 7 8 7 9 9 4
'UGT1A9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.46

Table S14914.  Gene #1474: 'UGT1A9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
UGT1A9 MUTATED 2 1 0 2 0
UGT1A9 WILD-TYPE 30 17 46 25 23
'UGT1A9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S14915.  Gene #1474: 'UGT1A9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
UGT1A9 MUTATED 3 1 1
UGT1A9 WILD-TYPE 40 66 35
'UGT1A9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.14

Table S14916.  Gene #1474: 'UGT1A9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UGT1A9 MUTATED 0 1 8
UGT1A9 WILD-TYPE 42 172 139

Figure S3799.  Get High-res Image Gene #1474: 'UGT1A9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UGT1A9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0715 (Fisher's exact test), Q value = 0.29

Table S14917.  Gene #1474: 'UGT1A9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UGT1A9 MUTATED 3 1 0
UGT1A9 WILD-TYPE 59 72 75
'UGT1A9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14918.  Gene #1474: 'UGT1A9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UGT1A9 MUTATED 2 3 2
UGT1A9 WILD-TYPE 68 117 98
'UGT1A9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 0.97

Table S14919.  Gene #1474: 'UGT1A9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UGT1A9 MUTATED 2 2 1 0 1 1 0 0 0
UGT1A9 WILD-TYPE 39 24 29 29 38 68 20 14 22
'UGT1A9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.035 (Fisher's exact test), Q value = 0.2

Table S14920.  Gene #1474: 'UGT1A9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UGT1A9 MUTATED 0 1 1 7
UGT1A9 WILD-TYPE 100 71 71 114

Figure S3800.  Get High-res Image Gene #1474: 'UGT1A9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'UGT1A9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.53

Table S14921.  Gene #1474: 'UGT1A9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UGT1A9 MUTATED 1 1 0 5 2
UGT1A9 WILD-TYPE 58 74 74 114 36
'UGT1A9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S14922.  Gene #1474: 'UGT1A9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UGT1A9 MUTATED 1 0 1 1 6
UGT1A9 WILD-TYPE 50 76 60 70 89
'UGT1A9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S14923.  Gene #1474: 'UGT1A9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UGT1A9 MUTATED 0 1 0 0 1 1 1 3 2
UGT1A9 WILD-TYPE 69 47 39 16 52 19 20 35 48
'MBP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S14924.  Gene #1475: 'MBP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MBP MUTATED 2 0 0 1 0
MBP WILD-TYPE 30 18 46 26 23
'MBP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S14925.  Gene #1475: 'MBP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MBP MUTATED 2 1 0
MBP WILD-TYPE 41 66 36
'MBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 0.19

Table S14926.  Gene #1475: 'MBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MBP MUTATED 1 0 5
MBP WILD-TYPE 41 173 142

Figure S3801.  Get High-res Image Gene #1475: 'MBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S14927.  Gene #1475: 'MBP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MBP MUTATED 2 0 1
MBP WILD-TYPE 60 73 74
'MBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S14928.  Gene #1475: 'MBP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MBP MUTATED 0 3 3
MBP WILD-TYPE 70 117 97
'MBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S14929.  Gene #1475: 'MBP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MBP MUTATED 0 0 1 1 1 3 0 0 0
MBP WILD-TYPE 41 26 29 28 38 66 20 14 22
'MBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S14930.  Gene #1475: 'MBP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MBP MUTATED 0 2 1 3
MBP WILD-TYPE 100 70 71 118
'MBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0595 (Fisher's exact test), Q value = 0.26

Table S14931.  Gene #1475: 'MBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MBP MUTATED 0 0 3 1 2
MBP WILD-TYPE 59 75 71 118 36
'MBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.75

Table S14932.  Gene #1475: 'MBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MBP MUTATED 0 3 1 0 2
MBP WILD-TYPE 51 73 60 71 93
'MBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00875 (Fisher's exact test), Q value = 0.088

Table S14933.  Gene #1475: 'MBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MBP MUTATED 0 1 0 2 0 1 1 1 0
MBP WILD-TYPE 69 47 39 14 53 19 20 37 50

Figure S3802.  Get High-res Image Gene #1475: 'MBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AAMP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S14934.  Gene #1476: 'AAMP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AAMP MUTATED 0 0 3
AAMP WILD-TYPE 42 173 144
'AAMP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S14935.  Gene #1476: 'AAMP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AAMP MUTATED 3 0 0
AAMP WILD-TYPE 59 73 75

Figure S3803.  Get High-res Image Gene #1476: 'AAMP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'AAMP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.92

Table S14936.  Gene #1476: 'AAMP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AAMP MUTATED 0 1 2
AAMP WILD-TYPE 70 119 98
'AAMP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S14937.  Gene #1476: 'AAMP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AAMP MUTATED 0 0 0 0 0 2 0 1 0
AAMP WILD-TYPE 41 26 30 29 39 67 20 13 22
'AAMP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 0.31

Table S14938.  Gene #1476: 'AAMP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AAMP MUTATED 0 1 2 0
AAMP WILD-TYPE 100 71 70 121
'AAMP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.19

Table S14939.  Gene #1476: 'AAMP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AAMP MUTATED 0 0 3 0 0
AAMP WILD-TYPE 59 75 71 119 38

Figure S3804.  Get High-res Image Gene #1476: 'AAMP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AAMP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S14940.  Gene #1476: 'AAMP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AAMP MUTATED 0 3 0 0 0
AAMP WILD-TYPE 51 73 61 71 95

Figure S3805.  Get High-res Image Gene #1476: 'AAMP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'AAMP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.5

Table S14941.  Gene #1476: 'AAMP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AAMP MUTATED 2 0 0 1 0 0 0 0 0
AAMP WILD-TYPE 67 48 39 15 53 20 21 38 50
'AAMP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S14942.  Gene #1476: 'AAMP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AAMP MUTATED 0 0 1 0 2 0
AAMP WILD-TYPE 13 16 13 11 9 9
'AAMP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S14943.  Gene #1476: 'AAMP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AAMP MUTATED 0 0 0 1 0 1 1 0 0
AAMP WILD-TYPE 11 7 7 8 8 6 10 9 5
'MGEA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.26

Table S14944.  Gene #1477: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MGEA5 MUTATED 2 1 5
MGEA5 WILD-TYPE 40 172 142
'MGEA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S14945.  Gene #1477: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MGEA5 MUTATED 3 2 1
MGEA5 WILD-TYPE 59 71 74
'MGEA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S14946.  Gene #1477: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MGEA5 MUTATED 0 2 5
MGEA5 WILD-TYPE 70 118 95
'MGEA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S14947.  Gene #1477: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MGEA5 MUTATED 2 0 0 0 1 1 1 0 2
MGEA5 WILD-TYPE 39 26 30 29 38 68 19 14 20
'MGEA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S14948.  Gene #1477: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MGEA5 MUTATED 1 3 2 2
MGEA5 WILD-TYPE 99 69 70 119
'MGEA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.95

Table S14949.  Gene #1477: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MGEA5 MUTATED 2 2 2 1 1
MGEA5 WILD-TYPE 57 73 72 118 37
'MGEA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 0.95

Table S14950.  Gene #1477: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MGEA5 MUTATED 1 2 2 0 3
MGEA5 WILD-TYPE 50 74 59 71 92
'MGEA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S14951.  Gene #1477: 'MGEA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MGEA5 MUTATED 1 2 0 1 0 1 1 1 1
MGEA5 WILD-TYPE 68 46 39 15 53 19 20 37 49
'BEX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.72

Table S14952.  Gene #1478: 'BEX5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BEX5 MUTATED 0 2 5
BEX5 WILD-TYPE 42 171 142
'BEX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S14953.  Gene #1478: 'BEX5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BEX5 MUTATED 3 1 1
BEX5 WILD-TYPE 59 72 74
'BEX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S14954.  Gene #1478: 'BEX5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BEX5 MUTATED 1 1 3
BEX5 WILD-TYPE 69 119 97
'BEX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S14955.  Gene #1478: 'BEX5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BEX5 MUTATED 1 1 0 0 0 1 2 0 0
BEX5 WILD-TYPE 40 25 30 29 39 68 18 14 22
'BEX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.19

Table S14956.  Gene #1478: 'BEX5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BEX5 MUTATED 0 2 4 1
BEX5 WILD-TYPE 100 70 68 120

Figure S3806.  Get High-res Image Gene #1478: 'BEX5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BEX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0796 (Fisher's exact test), Q value = 0.31

Table S14957.  Gene #1478: 'BEX5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BEX5 MUTATED 2 2 1 0 2
BEX5 WILD-TYPE 57 73 73 119 36
'BEX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.98

Table S14958.  Gene #1478: 'BEX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BEX5 MUTATED 1 2 2 0 2
BEX5 WILD-TYPE 50 74 59 71 93
'BEX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S14959.  Gene #1478: 'BEX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BEX5 MUTATED 1 2 0 0 1 1 0 2 0
BEX5 WILD-TYPE 68 46 39 16 52 19 21 36 50
'HAUS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S14960.  Gene #1479: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HAUS3 MUTATED 0 3 6
HAUS3 WILD-TYPE 42 170 141
'HAUS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S14961.  Gene #1479: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HAUS3 MUTATED 1 3 3
HAUS3 WILD-TYPE 61 70 72
'HAUS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S14962.  Gene #1479: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HAUS3 MUTATED 1 3 4
HAUS3 WILD-TYPE 69 117 96
'HAUS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S14963.  Gene #1479: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HAUS3 MUTATED 0 1 1 2 0 2 1 0 1
HAUS3 WILD-TYPE 41 25 29 27 39 67 19 14 21
'HAUS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S14964.  Gene #1479: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HAUS3 MUTATED 2 2 2 3
HAUS3 WILD-TYPE 98 70 70 118
'HAUS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S14965.  Gene #1479: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HAUS3 MUTATED 1 2 3 2 1
HAUS3 WILD-TYPE 58 73 71 117 37
'HAUS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S14966.  Gene #1479: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HAUS3 MUTATED 2 3 1 0 2
HAUS3 WILD-TYPE 49 73 60 71 93
'HAUS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0736 (Fisher's exact test), Q value = 0.29

Table S14967.  Gene #1479: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HAUS3 MUTATED 1 1 0 2 1 2 0 0 1
HAUS3 WILD-TYPE 68 47 39 14 52 18 21 38 49
'HYDIN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 9e-04 (Fisher's exact test), Q value = 0.023

Table S14968.  Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HYDIN MUTATED 11 0 3 6 1
HYDIN WILD-TYPE 21 18 43 21 22

Figure S3807.  Get High-res Image Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HYDIN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00299 (Fisher's exact test), Q value = 0.048

Table S14969.  Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HYDIN MUTATED 13 6 2
HYDIN WILD-TYPE 30 61 34

Figure S3808.  Get High-res Image Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HYDIN MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S14970.  Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HYDIN MUTATED 4 24 50
HYDIN WILD-TYPE 38 149 97

Figure S3809.  Get High-res Image Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HYDIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00235 (Fisher's exact test), Q value = 0.041

Table S14971.  Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HYDIN MUTATED 15 12 31
HYDIN WILD-TYPE 47 61 44

Figure S3810.  Get High-res Image Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HYDIN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.89

Table S14972.  Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HYDIN MUTATED 16 25 27
HYDIN WILD-TYPE 54 95 73
'HYDIN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S14973.  Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HYDIN MUTATED 6 11 5 7 8 20 5 1 5
HYDIN WILD-TYPE 35 15 25 22 31 49 15 13 17
'HYDIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S14974.  Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HYDIN MUTATED 15 23 21 21
HYDIN WILD-TYPE 85 49 51 100

Figure S3811.  Get High-res Image Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HYDIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S14975.  Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HYDIN MUTATED 9 19 27 11 14
HYDIN WILD-TYPE 50 56 47 108 24

Figure S3812.  Get High-res Image Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HYDIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00466 (Fisher's exact test), Q value = 0.063

Table S14976.  Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HYDIN MUTATED 14 26 10 7 21
HYDIN WILD-TYPE 37 50 51 64 74

Figure S3813.  Get High-res Image Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HYDIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00057 (Fisher's exact test), Q value = 0.017

Table S14977.  Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HYDIN MUTATED 18 13 5 9 5 5 2 14 7
HYDIN WILD-TYPE 51 35 34 7 48 15 19 24 43

Figure S3814.  Get High-res Image Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HYDIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S14978.  Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HYDIN MUTATED 4 3 4 2 6 1
HYDIN WILD-TYPE 9 13 10 9 5 8
'HYDIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S14979.  Gene #1480: 'HYDIN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HYDIN MUTATED 2 0 0 3 2 3 5 3 2
HYDIN WILD-TYPE 9 7 7 6 6 4 6 6 3
'NUDT16L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S14980.  Gene #1481: 'NUDT16L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NUDT16L1 MUTATED 0 0 3
NUDT16L1 WILD-TYPE 42 173 144
'NUDT16L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S14981.  Gene #1481: 'NUDT16L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NUDT16L1 MUTATED 0 2 1
NUDT16L1 WILD-TYPE 70 118 99
'NUDT16L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S14982.  Gene #1481: 'NUDT16L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NUDT16L1 MUTATED 0 1 1 0 0 1 0 0 0
NUDT16L1 WILD-TYPE 41 25 29 29 39 68 20 14 22
'NUDT16L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.99

Table S14983.  Gene #1481: 'NUDT16L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NUDT16L1 MUTATED 0 1 1 1
NUDT16L1 WILD-TYPE 100 71 71 120
'NUDT16L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.62

Table S14984.  Gene #1481: 'NUDT16L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NUDT16L1 MUTATED 0 1 1 0 1
NUDT16L1 WILD-TYPE 59 74 73 119 37
'NUDT16L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S14985.  Gene #1481: 'NUDT16L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NUDT16L1 MUTATED 1 1 0 0 1
NUDT16L1 WILD-TYPE 50 75 61 71 94
'NUDT16L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S14986.  Gene #1481: 'NUDT16L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NUDT16L1 MUTATED 1 1 0 0 0 0 0 1 0
NUDT16L1 WILD-TYPE 68 47 39 16 53 20 21 37 50
'AGBL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00214 (Fisher's exact test), Q value = 0.039

Table S14987.  Gene #1482: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AGBL5 MUTATED 0 1 11
AGBL5 WILD-TYPE 42 172 136

Figure S3815.  Get High-res Image Gene #1482: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AGBL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 0.29

Table S14988.  Gene #1482: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AGBL5 MUTATED 2 1 7
AGBL5 WILD-TYPE 60 72 68
'AGBL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S14989.  Gene #1482: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AGBL5 MUTATED 2 4 5
AGBL5 WILD-TYPE 68 116 95
'AGBL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.79

Table S14990.  Gene #1482: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AGBL5 MUTATED 2 1 1 0 0 4 2 1 0
AGBL5 WILD-TYPE 39 25 29 29 39 65 18 13 22
'AGBL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0394 (Fisher's exact test), Q value = 0.21

Table S14991.  Gene #1482: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AGBL5 MUTATED 1 6 3 2
AGBL5 WILD-TYPE 99 66 69 119

Figure S3816.  Get High-res Image Gene #1482: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'AGBL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00126 (Fisher's exact test), Q value = 0.029

Table S14992.  Gene #1482: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AGBL5 MUTATED 0 1 8 1 2
AGBL5 WILD-TYPE 59 74 66 118 36

Figure S3817.  Get High-res Image Gene #1482: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AGBL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S14993.  Gene #1482: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AGBL5 MUTATED 0 7 1 1 2
AGBL5 WILD-TYPE 51 69 60 70 93

Figure S3818.  Get High-res Image Gene #1482: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'AGBL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0056 (Fisher's exact test), Q value = 0.071

Table S14994.  Gene #1482: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AGBL5 MUTATED 2 2 0 4 1 0 0 2 0
AGBL5 WILD-TYPE 67 46 39 12 52 20 21 36 50

Figure S3819.  Get High-res Image Gene #1482: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AGBL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.19

Table S14995.  Gene #1482: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AGBL5 MUTATED 0 1 0 0 3 0
AGBL5 WILD-TYPE 13 15 14 11 8 9

Figure S3820.  Get High-res Image Gene #1482: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'AGBL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S14996.  Gene #1482: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AGBL5 MUTATED 0 0 0 2 0 1 1 0 0
AGBL5 WILD-TYPE 11 7 7 7 8 6 10 9 5
'C14ORF104 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S14997.  Gene #1483: 'C14ORF104 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C14ORF104 MUTATED 0 1 3
C14ORF104 WILD-TYPE 42 172 144
'C14ORF104 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S14998.  Gene #1483: 'C14ORF104 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C14ORF104 MUTATED 1 0 1 2
C14ORF104 WILD-TYPE 99 72 71 119
'C14ORF104 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14999.  Gene #1483: 'C14ORF104 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C14ORF104 MUTATED 0 1 1 2 0
C14ORF104 WILD-TYPE 59 74 73 117 38
'C14ORF104 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15000.  Gene #1483: 'C14ORF104 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C14ORF104 MUTATED 0 1 1 1 1
C14ORF104 WILD-TYPE 51 75 60 70 94
'C14ORF104 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S15001.  Gene #1483: 'C14ORF104 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C14ORF104 MUTATED 1 1 0 0 1 1 0 0 0
C14ORF104 WILD-TYPE 68 47 39 16 52 19 21 38 50
'ZSCAN20 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S15002.  Gene #1484: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZSCAN20 MUTATED 1 0 2 1 0
ZSCAN20 WILD-TYPE 31 18 44 26 23
'ZSCAN20 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S15003.  Gene #1484: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZSCAN20 MUTATED 2 1 1
ZSCAN20 WILD-TYPE 41 66 35
'ZSCAN20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.64

Table S15004.  Gene #1484: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZSCAN20 MUTATED 1 4 8
ZSCAN20 WILD-TYPE 41 169 139
'ZSCAN20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.47

Table S15005.  Gene #1484: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZSCAN20 MUTATED 5 1 3
ZSCAN20 WILD-TYPE 57 72 72
'ZSCAN20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.56

Table S15006.  Gene #1484: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZSCAN20 MUTATED 2 3 7
ZSCAN20 WILD-TYPE 68 117 93
'ZSCAN20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.77

Table S15007.  Gene #1484: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZSCAN20 MUTATED 0 0 2 1 2 6 1 0 0
ZSCAN20 WILD-TYPE 41 26 28 28 37 63 19 14 22
'ZSCAN20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S15008.  Gene #1484: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZSCAN20 MUTATED 1 5 3 4
ZSCAN20 WILD-TYPE 99 67 69 117
'ZSCAN20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S15009.  Gene #1484: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZSCAN20 MUTATED 1 4 4 2 2
ZSCAN20 WILD-TYPE 58 71 70 117 36
'ZSCAN20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S15010.  Gene #1484: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZSCAN20 MUTATED 1 4 2 2 4
ZSCAN20 WILD-TYPE 50 72 59 69 91
'ZSCAN20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S15011.  Gene #1484: 'ZSCAN20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZSCAN20 MUTATED 1 2 0 2 3 1 0 2 2
ZSCAN20 WILD-TYPE 68 46 39 14 50 19 21 36 48
'PLCB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.054 (Fisher's exact test), Q value = 0.25

Table S15012.  Gene #1485: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PLCB2 MUTATED 3 0 0 0 0
PLCB2 WILD-TYPE 29 18 46 27 23
'PLCB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0383 (Fisher's exact test), Q value = 0.21

Table S15013.  Gene #1485: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PLCB2 MUTATED 3 0 0
PLCB2 WILD-TYPE 40 67 36

Figure S3821.  Get High-res Image Gene #1485: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PLCB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S15014.  Gene #1485: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PLCB2 MUTATED 0 5 4
PLCB2 WILD-TYPE 42 168 143
'PLCB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.098 (Fisher's exact test), Q value = 0.34

Table S15015.  Gene #1485: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PLCB2 MUTATED 2 4 0
PLCB2 WILD-TYPE 60 69 75
'PLCB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S15016.  Gene #1485: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PLCB2 MUTATED 0 4 3
PLCB2 WILD-TYPE 70 116 97
'PLCB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S15017.  Gene #1485: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PLCB2 MUTATED 1 0 1 1 0 2 1 0 1
PLCB2 WILD-TYPE 40 26 29 28 39 67 19 14 21
'PLCB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S15018.  Gene #1485: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PLCB2 MUTATED 3 2 1 3
PLCB2 WILD-TYPE 97 70 71 118
'PLCB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S15019.  Gene #1485: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PLCB2 MUTATED 1 4 1 1 2
PLCB2 WILD-TYPE 58 71 73 118 36
'PLCB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 0.95

Table S15020.  Gene #1485: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PLCB2 MUTATED 1 2 0 2 4
PLCB2 WILD-TYPE 50 74 61 69 91
'PLCB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S15021.  Gene #1485: 'PLCB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PLCB2 MUTATED 2 1 1 0 0 1 2 1 1
PLCB2 WILD-TYPE 67 47 38 16 53 19 19 37 49
'SAFB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0465 (Fisher's exact test), Q value = 0.23

Table S15022.  Gene #1486: 'SAFB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SAFB MUTATED 3 1 0 0 0
SAFB WILD-TYPE 29 17 46 27 23

Figure S3822.  Get High-res Image Gene #1486: 'SAFB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SAFB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S15023.  Gene #1486: 'SAFB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SAFB MUTATED 2 1 1
SAFB WILD-TYPE 41 66 35
'SAFB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00908 (Fisher's exact test), Q value = 0.089

Table S15024.  Gene #1486: 'SAFB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SAFB MUTATED 1 2 11
SAFB WILD-TYPE 41 171 136

Figure S3823.  Get High-res Image Gene #1486: 'SAFB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SAFB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.92

Table S15025.  Gene #1486: 'SAFB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SAFB MUTATED 4 2 4
SAFB WILD-TYPE 58 71 71
'SAFB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0525 (Fisher's exact test), Q value = 0.25

Table S15026.  Gene #1486: 'SAFB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SAFB MUTATED 0 5 7
SAFB WILD-TYPE 70 115 93
'SAFB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S15027.  Gene #1486: 'SAFB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SAFB MUTATED 1 0 1 1 0 5 2 2 0
SAFB WILD-TYPE 40 26 29 28 39 64 18 12 22
'SAFB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.76

Table S15028.  Gene #1486: 'SAFB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SAFB MUTATED 3 5 3 3
SAFB WILD-TYPE 97 67 69 118
'SAFB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S15029.  Gene #1486: 'SAFB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SAFB MUTATED 1 3 6 2 2
SAFB WILD-TYPE 58 72 68 117 36
'SAFB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.58

Table S15030.  Gene #1486: 'SAFB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SAFB MUTATED 2 5 4 2 1
SAFB WILD-TYPE 49 71 57 69 94
'SAFB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0884 (Fisher's exact test), Q value = 0.32

Table S15031.  Gene #1486: 'SAFB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SAFB MUTATED 3 2 1 3 1 1 2 1 0
SAFB WILD-TYPE 66 46 38 13 52 19 19 37 50
'GSK3B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.37

Table S15032.  Gene #1487: 'GSK3B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GSK3B MUTATED 3 1 0 1 0
GSK3B WILD-TYPE 29 17 46 26 23
'GSK3B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S15033.  Gene #1487: 'GSK3B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GSK3B MUTATED 3 1 1
GSK3B WILD-TYPE 40 66 35
'GSK3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S15034.  Gene #1487: 'GSK3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GSK3B MUTATED 0 4 9
GSK3B WILD-TYPE 42 169 138
'GSK3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S15035.  Gene #1487: 'GSK3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GSK3B MUTATED 3 2 4
GSK3B WILD-TYPE 59 71 71
'GSK3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S15036.  Gene #1487: 'GSK3B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GSK3B MUTATED 1 5 4
GSK3B WILD-TYPE 69 115 96
'GSK3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S15037.  Gene #1487: 'GSK3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GSK3B MUTATED 3 1 2 1 1 2 0 0 0
GSK3B WILD-TYPE 38 25 28 28 38 67 20 14 22
'GSK3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S15038.  Gene #1487: 'GSK3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GSK3B MUTATED 2 6 2 4
GSK3B WILD-TYPE 98 66 70 117
'GSK3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S15039.  Gene #1487: 'GSK3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GSK3B MUTATED 2 3 4 2 3
GSK3B WILD-TYPE 57 72 70 117 35
'GSK3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S15040.  Gene #1487: 'GSK3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GSK3B MUTATED 2 3 4 2 3
GSK3B WILD-TYPE 49 73 57 69 92
'GSK3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S15041.  Gene #1487: 'GSK3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GSK3B MUTATED 2 2 0 1 2 3 1 2 1
GSK3B WILD-TYPE 67 46 39 15 51 17 20 36 49
'DNAJB11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S15042.  Gene #1488: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DNAJB11 MUTATED 0 4 5
DNAJB11 WILD-TYPE 42 169 142
'DNAJB11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.88

Table S15043.  Gene #1488: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DNAJB11 MUTATED 1 4 2
DNAJB11 WILD-TYPE 61 69 73
'DNAJB11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S15044.  Gene #1488: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DNAJB11 MUTATED 2 2 4
DNAJB11 WILD-TYPE 68 118 96
'DNAJB11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S15045.  Gene #1488: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DNAJB11 MUTATED 3 1 0 0 0 3 0 0 1
DNAJB11 WILD-TYPE 38 25 30 29 39 66 20 14 21
'DNAJB11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S15046.  Gene #1488: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DNAJB11 MUTATED 3 2 2 2
DNAJB11 WILD-TYPE 97 70 70 119
'DNAJB11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0398 (Fisher's exact test), Q value = 0.21

Table S15047.  Gene #1488: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DNAJB11 MUTATED 3 1 3 0 2
DNAJB11 WILD-TYPE 56 74 71 119 36

Figure S3824.  Get High-res Image Gene #1488: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DNAJB11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S15048.  Gene #1488: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DNAJB11 MUTATED 1 3 2 2 0
DNAJB11 WILD-TYPE 50 73 59 69 95
'DNAJB11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0807 (Fisher's exact test), Q value = 0.31

Table S15049.  Gene #1488: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DNAJB11 MUTATED 1 3 1 2 0 0 0 1 0
DNAJB11 WILD-TYPE 68 45 38 14 53 20 21 37 50
'DNAJB11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S15050.  Gene #1488: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DNAJB11 MUTATED 1 1 0 0 1 0
DNAJB11 WILD-TYPE 12 15 14 11 10 9
'DNAJB11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S15051.  Gene #1488: 'DNAJB11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DNAJB11 MUTATED 0 0 0 2 0 0 1 0 0
DNAJB11 WILD-TYPE 11 7 7 7 8 7 10 9 5
'SLC46A3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S15052.  Gene #1489: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC46A3 MUTATED 1 0 0 2 0
SLC46A3 WILD-TYPE 31 18 46 25 23
'SLC46A3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S15053.  Gene #1489: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC46A3 MUTATED 1 2 0
SLC46A3 WILD-TYPE 42 65 36
'SLC46A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.21

Table S15054.  Gene #1489: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC46A3 MUTATED 0 1 7
SLC46A3 WILD-TYPE 42 172 140

Figure S3825.  Get High-res Image Gene #1489: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC46A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.21

Table S15055.  Gene #1489: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC46A3 MUTATED 4 0 1
SLC46A3 WILD-TYPE 58 73 74

Figure S3826.  Get High-res Image Gene #1489: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SLC46A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S15056.  Gene #1489: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC46A3 MUTATED 0 3 3
SLC46A3 WILD-TYPE 70 117 97
'SLC46A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S15057.  Gene #1489: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC46A3 MUTATED 1 1 1 0 0 2 1 0 0
SLC46A3 WILD-TYPE 40 25 29 29 39 67 19 14 22
'SLC46A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S15058.  Gene #1489: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC46A3 MUTATED 0 1 3 4
SLC46A3 WILD-TYPE 100 71 69 117
'SLC46A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S15059.  Gene #1489: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC46A3 MUTATED 1 0 3 3 1
SLC46A3 WILD-TYPE 58 75 71 116 37
'SLC46A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S15060.  Gene #1489: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC46A3 MUTATED 1 2 1 0 4
SLC46A3 WILD-TYPE 50 74 60 71 91
'SLC46A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S15061.  Gene #1489: 'SLC46A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC46A3 MUTATED 1 2 0 0 1 1 1 1 1
SLC46A3 WILD-TYPE 68 46 39 16 52 19 20 37 49
'C9ORF102 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S15062.  Gene #1490: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C9ORF102 MUTATED 2 1 0 1 0
C9ORF102 WILD-TYPE 30 17 46 26 23
'C9ORF102 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S15063.  Gene #1490: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C9ORF102 MUTATED 2 1 1
C9ORF102 WILD-TYPE 41 66 35
'C9ORF102 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0069 (Fisher's exact test), Q value = 0.078

Table S15064.  Gene #1490: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C9ORF102 MUTATED 0 0 7
C9ORF102 WILD-TYPE 42 173 140

Figure S3827.  Get High-res Image Gene #1490: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C9ORF102 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S15065.  Gene #1490: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C9ORF102 MUTATED 1 0 3
C9ORF102 WILD-TYPE 61 73 72
'C9ORF102 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S15066.  Gene #1490: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C9ORF102 MUTATED 3 1 1
C9ORF102 WILD-TYPE 67 119 99
'C9ORF102 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 0.74

Table S15067.  Gene #1490: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C9ORF102 MUTATED 3 0 1 0 0 1 0 0 0
C9ORF102 WILD-TYPE 38 26 29 29 39 68 20 14 22
'C9ORF102 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0801 (Fisher's exact test), Q value = 0.31

Table S15068.  Gene #1490: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C9ORF102 MUTATED 0 1 4 3
C9ORF102 WILD-TYPE 100 71 68 118
'C9ORF102 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.97

Table S15069.  Gene #1490: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C9ORF102 MUTATED 1 1 2 2 2
C9ORF102 WILD-TYPE 58 74 72 117 36
'C9ORF102 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.9

Table S15070.  Gene #1490: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C9ORF102 MUTATED 0 2 3 1 2
C9ORF102 WILD-TYPE 51 74 58 70 93
'C9ORF102 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S15071.  Gene #1490: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C9ORF102 MUTATED 0 3 0 0 2 1 1 1 0
C9ORF102 WILD-TYPE 69 45 39 16 51 19 20 37 50
'NSF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S15072.  Gene #1491: 'NSF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NSF MUTATED 0 1 3
NSF WILD-TYPE 42 172 144
'NSF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S15073.  Gene #1491: 'NSF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NSF MUTATED 2 1 0
NSF WILD-TYPE 60 72 75
'NSF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S15074.  Gene #1491: 'NSF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NSF MUTATED 0 3 1
NSF WILD-TYPE 70 117 99
'NSF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S15075.  Gene #1491: 'NSF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NSF MUTATED 0 0 1 0 1 1 0 1 0
NSF WILD-TYPE 41 26 29 29 38 68 20 13 22
'NSF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15076.  Gene #1491: 'NSF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NSF MUTATED 1 1 1 1
NSF WILD-TYPE 99 71 71 120
'NSF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S15077.  Gene #1491: 'NSF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NSF MUTATED 1 0 2 0 1
NSF WILD-TYPE 58 75 72 119 37
'NSF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15078.  Gene #1491: 'NSF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NSF MUTATED 0 1 1 1 1
NSF WILD-TYPE 51 75 60 70 94
'NSF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S15079.  Gene #1491: 'NSF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NSF MUTATED 2 1 0 0 0 0 0 1 0
NSF WILD-TYPE 67 47 39 16 53 20 21 37 50
'MTIF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0873 (Fisher's exact test), Q value = 0.32

Table S15080.  Gene #1492: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MTIF2 MUTATED 0 2 7
MTIF2 WILD-TYPE 42 171 140
'MTIF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S15081.  Gene #1492: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MTIF2 MUTATED 3 0 3
MTIF2 WILD-TYPE 59 73 72
'MTIF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S15082.  Gene #1492: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MTIF2 MUTATED 1 4 3
MTIF2 WILD-TYPE 69 116 97
'MTIF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S15083.  Gene #1492: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MTIF2 MUTATED 2 0 2 1 0 2 0 0 1
MTIF2 WILD-TYPE 39 26 28 28 39 67 20 14 21
'MTIF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S15084.  Gene #1492: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MTIF2 MUTATED 0 1 5 3
MTIF2 WILD-TYPE 100 71 67 118

Figure S3828.  Get High-res Image Gene #1492: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MTIF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S15085.  Gene #1492: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MTIF2 MUTATED 2 1 3 1 2
MTIF2 WILD-TYPE 57 74 71 118 36
'MTIF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S15086.  Gene #1492: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MTIF2 MUTATED 2 3 1 0 3
MTIF2 WILD-TYPE 49 73 60 71 92
'MTIF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S15087.  Gene #1492: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MTIF2 MUTATED 1 4 0 0 1 1 0 2 0
MTIF2 WILD-TYPE 68 44 39 16 52 19 21 36 50
'MEGF8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00767 (Fisher's exact test), Q value = 0.082

Table S15088.  Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MEGF8 MUTATED 5 0 0 1 0
MEGF8 WILD-TYPE 27 18 46 26 23

Figure S3829.  Get High-res Image Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MEGF8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S15089.  Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MEGF8 MUTATED 5 1 0
MEGF8 WILD-TYPE 38 66 36

Figure S3830.  Get High-res Image Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MEGF8 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S15090.  Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MEGF8 MUTATED 2 0 21
MEGF8 WILD-TYPE 40 173 126

Figure S3831.  Get High-res Image Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MEGF8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0069

Table S15091.  Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MEGF8 MUTATED 4 0 13
MEGF8 WILD-TYPE 58 73 62

Figure S3832.  Get High-res Image Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MEGF8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0683 (Fisher's exact test), Q value = 0.28

Table S15092.  Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MEGF8 MUTATED 2 7 12
MEGF8 WILD-TYPE 68 113 88
'MEGF8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S15093.  Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MEGF8 MUTATED 1 1 2 4 3 7 3 0 0
MEGF8 WILD-TYPE 40 25 28 25 36 62 17 14 22
'MEGF8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S15094.  Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MEGF8 MUTATED 0 12 5 7
MEGF8 WILD-TYPE 100 60 67 114

Figure S3833.  Get High-res Image Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MEGF8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S15095.  Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MEGF8 MUTATED 1 1 15 1 6
MEGF8 WILD-TYPE 58 74 59 118 32

Figure S3834.  Get High-res Image Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MEGF8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.011

Table S15096.  Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MEGF8 MUTATED 1 14 1 1 7
MEGF8 WILD-TYPE 50 62 60 70 88

Figure S3835.  Get High-res Image Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MEGF8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S15097.  Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MEGF8 MUTATED 2 5 0 7 2 2 1 5 0
MEGF8 WILD-TYPE 67 43 39 9 51 18 20 33 50

Figure S3836.  Get High-res Image Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MEGF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.02

Table S15098.  Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MEGF8 MUTATED 0 0 0 0 4 0
MEGF8 WILD-TYPE 13 16 14 11 7 9

Figure S3837.  Get High-res Image Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MEGF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S15099.  Gene #1493: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MEGF8 MUTATED 0 0 0 2 0 1 1 0 0
MEGF8 WILD-TYPE 11 7 7 7 8 6 10 9 5
'ARID2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00583 (Fisher's exact test), Q value = 0.072

Table S15100.  Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ARID2 MUTATED 6 1 0 2 0
ARID2 WILD-TYPE 26 17 46 25 23

Figure S3838.  Get High-res Image Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ARID2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00673 (Fisher's exact test), Q value = 0.077

Table S15101.  Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ARID2 MUTATED 7 1 1
ARID2 WILD-TYPE 36 66 35

Figure S3839.  Get High-res Image Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00084 (Fisher's exact test), Q value = 0.022

Table S15102.  Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARID2 MUTATED 3 6 22
ARID2 WILD-TYPE 39 167 125

Figure S3840.  Get High-res Image Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S15103.  Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARID2 MUTATED 9 4 7
ARID2 WILD-TYPE 53 69 68
'ARID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S15104.  Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARID2 MUTATED 5 7 14
ARID2 WILD-TYPE 65 113 86
'ARID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0471 (Fisher's exact test), Q value = 0.23

Table S15105.  Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARID2 MUTATED 1 1 2 1 7 12 1 1 0
ARID2 WILD-TYPE 40 25 28 28 32 57 19 13 22

Figure S3841.  Get High-res Image Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S15106.  Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARID2 MUTATED 5 5 11 9
ARID2 WILD-TYPE 95 67 61 112
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00667 (Fisher's exact test), Q value = 0.076

Table S15107.  Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARID2 MUTATED 5 5 10 3 7
ARID2 WILD-TYPE 54 70 64 116 31

Figure S3842.  Get High-res Image Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S15108.  Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARID2 MUTATED 2 9 8 2 8
ARID2 WILD-TYPE 49 67 53 69 87
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S15109.  Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARID2 MUTATED 5 6 3 3 4 2 1 4 1
ARID2 WILD-TYPE 64 42 36 13 49 18 20 34 49
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.83

Table S15110.  Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ARID2 MUTATED 1 2 3 0 2 0
ARID2 WILD-TYPE 12 14 11 11 9 9
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0878 (Fisher's exact test), Q value = 0.32

Table S15111.  Gene #1494: 'ARID2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ARID2 MUTATED 0 2 0 1 3 0 2 0 0
ARID2 WILD-TYPE 11 5 7 8 5 7 9 9 5
'PCDHGA4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S15112.  Gene #1495: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PCDHGA4 MUTATED 2 0 0 2 0
PCDHGA4 WILD-TYPE 30 18 46 25 23
'PCDHGA4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0095 (Fisher's exact test), Q value = 0.092

Table S15113.  Gene #1495: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PCDHGA4 MUTATED 4 0 0
PCDHGA4 WILD-TYPE 39 67 36

Figure S3843.  Get High-res Image Gene #1495: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PCDHGA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00111 (Fisher's exact test), Q value = 0.027

Table S15114.  Gene #1495: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PCDHGA4 MUTATED 0 3 15
PCDHGA4 WILD-TYPE 42 170 132

Figure S3844.  Get High-res Image Gene #1495: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PCDHGA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 0.3

Table S15115.  Gene #1495: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PCDHGA4 MUTATED 6 1 6
PCDHGA4 WILD-TYPE 56 72 69
'PCDHGA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S15116.  Gene #1495: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PCDHGA4 MUTATED 5 4 9
PCDHGA4 WILD-TYPE 65 116 91
'PCDHGA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0945 (Fisher's exact test), Q value = 0.34

Table S15117.  Gene #1495: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PCDHGA4 MUTATED 2 1 1 0 5 6 0 3 0
PCDHGA4 WILD-TYPE 39 25 29 29 34 63 20 11 22
'PCDHGA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S15118.  Gene #1495: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PCDHGA4 MUTATED 2 7 4 5
PCDHGA4 WILD-TYPE 98 65 68 116
'PCDHGA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S15119.  Gene #1495: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PCDHGA4 MUTATED 4 1 8 0 5
PCDHGA4 WILD-TYPE 55 74 66 119 33

Figure S3845.  Get High-res Image Gene #1495: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PCDHGA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S15120.  Gene #1495: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PCDHGA4 MUTATED 2 6 2 1 6
PCDHGA4 WILD-TYPE 49 70 59 70 89
'PCDHGA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00553 (Fisher's exact test), Q value = 0.07

Table S15121.  Gene #1495: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PCDHGA4 MUTATED 4 4 0 3 0 0 0 5 1
PCDHGA4 WILD-TYPE 65 44 39 13 53 20 21 33 49

Figure S3846.  Get High-res Image Gene #1495: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PCDHGA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0594 (Fisher's exact test), Q value = 0.26

Table S15122.  Gene #1495: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PCDHGA4 MUTATED 0 0 1 1 3 0
PCDHGA4 WILD-TYPE 13 16 13 10 8 9
'PCDHGA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S15123.  Gene #1495: 'PCDHGA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PCDHGA4 MUTATED 0 0 0 1 1 1 1 1 0
PCDHGA4 WILD-TYPE 11 7 7 8 7 6 10 8 5
'NRAP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S15124.  Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NRAP MUTATED 2 0 0 2 1
NRAP WILD-TYPE 30 18 46 25 22
'NRAP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0246 (Fisher's exact test), Q value = 0.16

Table S15125.  Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NRAP MUTATED 4 0 1
NRAP WILD-TYPE 39 67 35

Figure S3847.  Get High-res Image Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NRAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00043 (Fisher's exact test), Q value = 0.015

Table S15126.  Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NRAP MUTATED 1 4 19
NRAP WILD-TYPE 41 169 128

Figure S3848.  Get High-res Image Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NRAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S15127.  Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NRAP MUTATED 10 2 7
NRAP WILD-TYPE 52 71 68

Figure S3849.  Get High-res Image Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NRAP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0859 (Fisher's exact test), Q value = 0.32

Table S15128.  Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NRAP MUTATED 2 6 11
NRAP WILD-TYPE 68 114 89
'NRAP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S15129.  Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NRAP MUTATED 1 3 0 3 1 8 2 1 0
NRAP WILD-TYPE 40 23 30 26 38 61 18 13 22
'NRAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00947 (Fisher's exact test), Q value = 0.092

Table S15130.  Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NRAP MUTATED 2 9 8 5
NRAP WILD-TYPE 98 63 64 116

Figure S3850.  Get High-res Image Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NRAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00142 (Fisher's exact test), Q value = 0.031

Table S15131.  Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NRAP MUTATED 2 3 13 3 3
NRAP WILD-TYPE 57 72 61 116 35

Figure S3851.  Get High-res Image Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NRAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.092 (Fisher's exact test), Q value = 0.33

Table S15132.  Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NRAP MUTATED 2 10 5 3 3
NRAP WILD-TYPE 49 66 56 68 92
'NRAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S15133.  Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NRAP MUTATED 4 8 0 3 4 1 1 1 1
NRAP WILD-TYPE 65 40 39 13 49 19 20 37 49

Figure S3852.  Get High-res Image Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NRAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0902 (Fisher's exact test), Q value = 0.33

Table S15134.  Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NRAP MUTATED 0 0 2 0 2 0
NRAP WILD-TYPE 13 16 12 11 9 9
'NRAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S15135.  Gene #1496: 'NRAP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NRAP MUTATED 0 0 0 1 2 0 1 0 0
NRAP WILD-TYPE 11 7 7 8 6 7 10 9 5
'DDX11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00753 (Fisher's exact test), Q value = 0.081

Table S15136.  Gene #1497: 'DDX11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DDX11 MUTATED 0 0 7
DDX11 WILD-TYPE 42 173 140

Figure S3853.  Get High-res Image Gene #1497: 'DDX11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DDX11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S15137.  Gene #1497: 'DDX11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DDX11 MUTATED 1 1 4
DDX11 WILD-TYPE 61 72 71
'DDX11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S15138.  Gene #1497: 'DDX11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DDX11 MUTATED 1 3 3
DDX11 WILD-TYPE 69 117 97
'DDX11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.98

Table S15139.  Gene #1497: 'DDX11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DDX11 MUTATED 0 0 0 1 2 3 1 0 0
DDX11 WILD-TYPE 41 26 30 28 37 66 19 14 22
'DDX11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0084 (Fisher's exact test), Q value = 0.086

Table S15140.  Gene #1497: 'DDX11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DDX11 MUTATED 0 5 1 1
DDX11 WILD-TYPE 100 67 71 120

Figure S3854.  Get High-res Image Gene #1497: 'DDX11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DDX11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.095

Table S15141.  Gene #1497: 'DDX11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DDX11 MUTATED 0 1 5 0 1
DDX11 WILD-TYPE 59 74 69 119 37

Figure S3855.  Get High-res Image Gene #1497: 'DDX11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DDX11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0284 (Fisher's exact test), Q value = 0.18

Table S15142.  Gene #1497: 'DDX11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DDX11 MUTATED 1 5 0 0 1
DDX11 WILD-TYPE 50 71 61 71 94

Figure S3856.  Get High-res Image Gene #1497: 'DDX11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DDX11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.94

Table S15143.  Gene #1497: 'DDX11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DDX11 MUTATED 3 1 0 1 1 0 0 1 0
DDX11 WILD-TYPE 66 47 39 15 52 20 21 37 50
'KIF5B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.48

Table S15144.  Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIF5B MUTATED 1 0 0 2 0
KIF5B WILD-TYPE 31 18 46 25 23
'KIF5B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S15145.  Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIF5B MUTATED 3 0 0
KIF5B WILD-TYPE 40 67 36

Figure S3857.  Get High-res Image Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KIF5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00861 (Fisher's exact test), Q value = 0.087

Table S15146.  Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIF5B MUTATED 1 2 11
KIF5B WILD-TYPE 41 171 136

Figure S3858.  Get High-res Image Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIF5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S15147.  Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIF5B MUTATED 3 4 3
KIF5B WILD-TYPE 59 69 72
'KIF5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S15148.  Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIF5B MUTATED 2 4 6
KIF5B WILD-TYPE 68 116 94
'KIF5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S15149.  Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIF5B MUTATED 1 1 1 0 1 7 0 1 0
KIF5B WILD-TYPE 40 25 29 29 38 62 20 13 22
'KIF5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S15150.  Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIF5B MUTATED 4 3 3 4
KIF5B WILD-TYPE 96 69 69 117
'KIF5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00206 (Fisher's exact test), Q value = 0.038

Table S15151.  Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIF5B MUTATED 1 3 6 0 4
KIF5B WILD-TYPE 58 72 68 119 34

Figure S3859.  Get High-res Image Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIF5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 0.21

Table S15152.  Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIF5B MUTATED 2 7 1 0 3
KIF5B WILD-TYPE 49 69 60 71 92

Figure S3860.  Get High-res Image Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIF5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0225 (Fisher's exact test), Q value = 0.16

Table S15153.  Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIF5B MUTATED 3 3 1 3 0 0 0 3 0
KIF5B WILD-TYPE 66 45 38 13 53 20 21 35 50

Figure S3861.  Get High-res Image Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.17

Table S15154.  Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIF5B MUTATED 0 0 1 0 3 0
KIF5B WILD-TYPE 13 16 13 11 8 9

Figure S3862.  Get High-res Image Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S15155.  Gene #1498: 'KIF5B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIF5B MUTATED 0 0 0 1 0 2 1 0 0
KIF5B WILD-TYPE 11 7 7 8 8 5 10 9 5
'ZNF418 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00862 (Fisher's exact test), Q value = 0.087

Table S15156.  Gene #1499: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF418 MUTATED 4 0 0 0 0
ZNF418 WILD-TYPE 28 18 46 27 23

Figure S3863.  Get High-res Image Gene #1499: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF418 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0524 (Fisher's exact test), Q value = 0.25

Table S15157.  Gene #1499: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF418 MUTATED 3 0 1
ZNF418 WILD-TYPE 40 67 35
'ZNF418 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00889 (Fisher's exact test), Q value = 0.088

Table S15158.  Gene #1499: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF418 MUTATED 1 2 11
ZNF418 WILD-TYPE 41 171 136

Figure S3864.  Get High-res Image Gene #1499: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF418 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S15159.  Gene #1499: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF418 MUTATED 3 1 6
ZNF418 WILD-TYPE 59 72 69
'ZNF418 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S15160.  Gene #1499: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF418 MUTATED 0 7 4
ZNF418 WILD-TYPE 70 113 96
'ZNF418 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.95

Table S15161.  Gene #1499: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF418 MUTATED 2 2 1 3 1 2 0 0 0
ZNF418 WILD-TYPE 39 24 29 26 38 67 20 14 22
'ZNF418 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.17

Table S15162.  Gene #1499: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF418 MUTATED 1 7 1 5
ZNF418 WILD-TYPE 99 65 71 116

Figure S3865.  Get High-res Image Gene #1499: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF418 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.69

Table S15163.  Gene #1499: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF418 MUTATED 2 3 4 2 3
ZNF418 WILD-TYPE 57 72 70 117 35
'ZNF418 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S15164.  Gene #1499: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF418 MUTATED 1 5 2 1 5
ZNF418 WILD-TYPE 50 71 59 70 90
'ZNF418 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S15165.  Gene #1499: 'ZNF418 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF418 MUTATED 3 2 0 2 2 0 0 3 2
ZNF418 WILD-TYPE 66 46 39 14 51 20 21 35 48
'TRPC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0981 (Fisher's exact test), Q value = 0.34

Table S15166.  Gene #1500: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TRPC1 MUTATED 3 0 0 1 0
TRPC1 WILD-TYPE 29 18 46 26 23
'TRPC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S15167.  Gene #1500: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TRPC1 MUTATED 2 1 1
TRPC1 WILD-TYPE 41 66 35
'TRPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 0.34

Table S15168.  Gene #1500: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRPC1 MUTATED 1 3 9
TRPC1 WILD-TYPE 41 170 138
'TRPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S15169.  Gene #1500: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRPC1 MUTATED 3 2 4
TRPC1 WILD-TYPE 59 71 71
'TRPC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S15170.  Gene #1500: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRPC1 MUTATED 2 5 3
TRPC1 WILD-TYPE 68 115 97
'TRPC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S15171.  Gene #1500: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRPC1 MUTATED 2 0 1 2 0 3 1 0 1
TRPC1 WILD-TYPE 39 26 29 27 39 66 19 14 21
'TRPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S15172.  Gene #1500: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRPC1 MUTATED 2 1 6 4
TRPC1 WILD-TYPE 98 71 66 117
'TRPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.94

Table S15173.  Gene #1500: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRPC1 MUTATED 2 2 5 3 1
TRPC1 WILD-TYPE 57 73 69 116 37
'TRPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S15174.  Gene #1500: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRPC1 MUTATED 1 3 3 3 2
TRPC1 WILD-TYPE 50 73 58 68 93
'TRPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0753 (Fisher's exact test), Q value = 0.3

Table S15175.  Gene #1500: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRPC1 MUTATED 2 4 0 2 2 1 1 0 0
TRPC1 WILD-TYPE 67 44 39 14 51 19 20 38 50
'TRPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0963 (Fisher's exact test), Q value = 0.34

Table S15176.  Gene #1500: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TRPC1 MUTATED 0 1 0 0 2 2
TRPC1 WILD-TYPE 13 15 14 11 9 7
'TRPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S15177.  Gene #1500: 'TRPC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TRPC1 MUTATED 0 0 0 0 1 1 1 2 0
TRPC1 WILD-TYPE 11 7 7 9 7 6 10 7 5
'ZNF124 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00233 (Fisher's exact test), Q value = 0.041

Table S15178.  Gene #1501: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF124 MUTATED 0 0 8
ZNF124 WILD-TYPE 42 173 139

Figure S3866.  Get High-res Image Gene #1501: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF124 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0809 (Fisher's exact test), Q value = 0.31

Table S15179.  Gene #1501: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF124 MUTATED 4 0 3
ZNF124 WILD-TYPE 58 73 72
'ZNF124 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S15180.  Gene #1501: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF124 MUTATED 0 3 5
ZNF124 WILD-TYPE 70 117 95
'ZNF124 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S15181.  Gene #1501: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF124 MUTATED 1 1 0 1 1 4 0 0 0
ZNF124 WILD-TYPE 40 25 30 28 38 65 20 14 22
'ZNF124 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.28

Table S15182.  Gene #1501: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF124 MUTATED 0 4 2 2
ZNF124 WILD-TYPE 100 68 70 119
'ZNF124 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0314 (Fisher's exact test), Q value = 0.19

Table S15183.  Gene #1501: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF124 MUTATED 1 1 4 0 2
ZNF124 WILD-TYPE 58 74 70 119 36

Figure S3867.  Get High-res Image Gene #1501: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF124 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S15184.  Gene #1501: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF124 MUTATED 0 4 1 0 2
ZNF124 WILD-TYPE 51 72 60 71 93
'ZNF124 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S15185.  Gene #1501: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF124 MUTATED 1 2 0 2 0 0 0 1 1
ZNF124 WILD-TYPE 68 46 39 14 53 20 21 37 49
'KLC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S15186.  Gene #1502: 'KLC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KLC3 MUTATED 0 2 4
KLC3 WILD-TYPE 42 171 143
'KLC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S15187.  Gene #1502: 'KLC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KLC3 MUTATED 4 1 1
KLC3 WILD-TYPE 58 72 74
'KLC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00168 (Fisher's exact test), Q value = 0.034

Table S15188.  Gene #1502: 'KLC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KLC3 MUTATED 0 0 6
KLC3 WILD-TYPE 70 120 94

Figure S3868.  Get High-res Image Gene #1502: 'KLC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KLC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S15189.  Gene #1502: 'KLC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KLC3 MUTATED 1 0 0 0 0 5 0 0 0
KLC3 WILD-TYPE 40 26 30 29 39 64 20 14 22
'KLC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S15190.  Gene #1502: 'KLC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KLC3 MUTATED 1 1 3 1
KLC3 WILD-TYPE 99 71 69 120
'KLC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.82

Table S15191.  Gene #1502: 'KLC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KLC3 MUTATED 1 1 3 1 0
KLC3 WILD-TYPE 58 74 71 118 38
'KLC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0693 (Fisher's exact test), Q value = 0.28

Table S15192.  Gene #1502: 'KLC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KLC3 MUTATED 1 2 3 0 0
KLC3 WILD-TYPE 50 74 58 71 95
'KLC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S15193.  Gene #1502: 'KLC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KLC3 MUTATED 0 3 1 1 1 0 0 0 0
KLC3 WILD-TYPE 69 45 38 15 52 20 21 38 50
'KIAA0528 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S15194.  Gene #1503: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIAA0528 MUTATED 2 0 0 1 1
KIAA0528 WILD-TYPE 30 18 46 26 22
'KIAA0528 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S15195.  Gene #1503: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIAA0528 MUTATED 2 1 1
KIAA0528 WILD-TYPE 41 66 35
'KIAA0528 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00904 (Fisher's exact test), Q value = 0.089

Table S15196.  Gene #1503: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA0528 MUTATED 1 2 11
KIAA0528 WILD-TYPE 41 171 136

Figure S3869.  Get High-res Image Gene #1503: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0528 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.73

Table S15197.  Gene #1503: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA0528 MUTATED 5 2 3
KIAA0528 WILD-TYPE 57 71 72
'KIAA0528 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S15198.  Gene #1503: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA0528 MUTATED 1 5 4
KIAA0528 WILD-TYPE 69 115 96
'KIAA0528 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S15199.  Gene #1503: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA0528 MUTATED 1 1 1 2 0 3 1 0 1
KIAA0528 WILD-TYPE 40 25 29 27 39 66 19 14 21
'KIAA0528 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.85

Table S15200.  Gene #1503: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA0528 MUTATED 2 4 4 5
KIAA0528 WILD-TYPE 98 68 68 116
'KIAA0528 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S15201.  Gene #1503: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA0528 MUTATED 1 3 6 3 2
KIAA0528 WILD-TYPE 58 72 68 116 36
'KIAA0528 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S15202.  Gene #1503: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA0528 MUTATED 1 5 2 1 6
KIAA0528 WILD-TYPE 50 71 59 70 89
'KIAA0528 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S15203.  Gene #1503: 'KIAA0528 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA0528 MUTATED 0 4 1 2 2 1 1 2 2
KIAA0528 WILD-TYPE 69 44 38 14 51 19 20 36 48
'RNF219 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S15204.  Gene #1504: 'RNF219 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RNF219 MUTATED 1 4 9
RNF219 WILD-TYPE 41 169 138
'RNF219 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.94

Table S15205.  Gene #1504: 'RNF219 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RNF219 MUTATED 5 3 5
RNF219 WILD-TYPE 57 70 70
'RNF219 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S15206.  Gene #1504: 'RNF219 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RNF219 MUTATED 2 4 7
RNF219 WILD-TYPE 68 116 93
'RNF219 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0676 (Fisher's exact test), Q value = 0.28

Table S15207.  Gene #1504: 'RNF219 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RNF219 MUTATED 1 0 0 2 0 7 0 2 1
RNF219 WILD-TYPE 40 26 30 27 39 62 20 12 21
'RNF219 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.12

Table S15208.  Gene #1504: 'RNF219 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RNF219 MUTATED 2 6 5 1
RNF219 WILD-TYPE 98 66 67 120

Figure S3870.  Get High-res Image Gene #1504: 'RNF219 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RNF219 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00065 (Fisher's exact test), Q value = 0.019

Table S15209.  Gene #1504: 'RNF219 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RNF219 MUTATED 2 2 9 0 1
RNF219 WILD-TYPE 57 73 65 119 37

Figure S3871.  Get High-res Image Gene #1504: 'RNF219 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RNF219 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00147 (Fisher's exact test), Q value = 0.032

Table S15210.  Gene #1504: 'RNF219 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RNF219 MUTATED 3 7 3 0 0
RNF219 WILD-TYPE 48 69 58 71 95

Figure S3872.  Get High-res Image Gene #1504: 'RNF219 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RNF219 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S15211.  Gene #1504: 'RNF219 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RNF219 MUTATED 3 5 1 3 1 0 0 0 0
RNF219 WILD-TYPE 66 43 38 13 52 20 21 38 50

Figure S3873.  Get High-res Image Gene #1504: 'RNF219 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RNF219 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.19

Table S15212.  Gene #1504: 'RNF219 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RNF219 MUTATED 0 1 0 0 3 0
RNF219 WILD-TYPE 13 15 14 11 8 9

Figure S3874.  Get High-res Image Gene #1504: 'RNF219 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RNF219 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 0.98

Table S15213.  Gene #1504: 'RNF219 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RNF219 MUTATED 1 0 0 2 0 0 1 0 0
RNF219 WILD-TYPE 10 7 7 7 8 7 10 9 5
'MED12L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 0.13

Table S15214.  Gene #1505: 'MED12L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MED12L MUTATED 7 0 1 2 1
MED12L WILD-TYPE 25 18 45 25 22

Figure S3875.  Get High-res Image Gene #1505: 'MED12L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MED12L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0352 (Fisher's exact test), Q value = 0.2

Table S15215.  Gene #1505: 'MED12L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MED12L MUTATED 7 2 2
MED12L WILD-TYPE 36 65 34

Figure S3876.  Get High-res Image Gene #1505: 'MED12L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MED12L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00298 (Fisher's exact test), Q value = 0.047

Table S15216.  Gene #1505: 'MED12L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MED12L MUTATED 1 7 20
MED12L WILD-TYPE 41 166 127

Figure S3877.  Get High-res Image Gene #1505: 'MED12L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MED12L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S15217.  Gene #1505: 'MED12L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MED12L MUTATED 6 3 8
MED12L WILD-TYPE 56 70 67
'MED12L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.85

Table S15218.  Gene #1505: 'MED12L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MED12L MUTATED 3 8 9
MED12L WILD-TYPE 67 112 91
'MED12L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S15219.  Gene #1505: 'MED12L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MED12L MUTATED 3 2 2 1 2 8 0 0 2
MED12L WILD-TYPE 38 24 28 28 37 61 20 14 20
'MED12L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S15220.  Gene #1505: 'MED12L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MED12L MUTATED 3 7 6 12
MED12L WILD-TYPE 97 65 66 109
'MED12L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0729 (Fisher's exact test), Q value = 0.29

Table S15221.  Gene #1505: 'MED12L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MED12L MUTATED 3 4 8 6 7
MED12L WILD-TYPE 56 71 66 113 31
'MED12L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S15222.  Gene #1505: 'MED12L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MED12L MUTATED 3 7 4 1 11
MED12L WILD-TYPE 48 69 57 70 84
'MED12L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S15223.  Gene #1505: 'MED12L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MED12L MUTATED 4 5 2 2 3 2 1 4 3
MED12L WILD-TYPE 65 43 37 14 50 18 20 34 47
'MED12L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.75

Table S15224.  Gene #1505: 'MED12L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MED12L MUTATED 0 2 0 0 1 0
MED12L WILD-TYPE 13 14 14 11 10 9
'MED12L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S15225.  Gene #1505: 'MED12L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MED12L MUTATED 0 1 0 1 0 0 1 0 0
MED12L WILD-TYPE 11 6 7 8 8 7 10 9 5
'PIWIL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S15226.  Gene #1506: 'PIWIL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PIWIL1 MUTATED 2 0 0 1 0
PIWIL1 WILD-TYPE 30 18 46 26 23
'PIWIL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S15227.  Gene #1506: 'PIWIL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PIWIL1 MUTATED 2 1 0
PIWIL1 WILD-TYPE 41 66 36
'PIWIL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00093 (Fisher's exact test), Q value = 0.024

Table S15228.  Gene #1506: 'PIWIL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PIWIL1 MUTATED 2 3 17
PIWIL1 WILD-TYPE 40 170 130

Figure S3878.  Get High-res Image Gene #1506: 'PIWIL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIWIL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.26

Table S15229.  Gene #1506: 'PIWIL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PIWIL1 MUTATED 6 2 10
PIWIL1 WILD-TYPE 56 71 65
'PIWIL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S15230.  Gene #1506: 'PIWIL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PIWIL1 MUTATED 5 4 9
PIWIL1 WILD-TYPE 65 116 91
'PIWIL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S15231.  Gene #1506: 'PIWIL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PIWIL1 MUTATED 4 2 2 1 1 5 1 2 0
PIWIL1 WILD-TYPE 37 24 28 28 38 64 19 12 22
'PIWIL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0672 (Fisher's exact test), Q value = 0.28

Table S15232.  Gene #1506: 'PIWIL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PIWIL1 MUTATED 4 9 5 4
PIWIL1 WILD-TYPE 96 63 67 117
'PIWIL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0368 (Fisher's exact test), Q value = 0.2

Table S15233.  Gene #1506: 'PIWIL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PIWIL1 MUTATED 3 5 9 2 3
PIWIL1 WILD-TYPE 56 70 65 117 35

Figure S3879.  Get High-res Image Gene #1506: 'PIWIL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIWIL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S15234.  Gene #1506: 'PIWIL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PIWIL1 MUTATED 3 7 6 1 5
PIWIL1 WILD-TYPE 48 69 55 70 90
'PIWIL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S15235.  Gene #1506: 'PIWIL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PIWIL1 MUTATED 6 5 2 2 1 1 0 5 0
PIWIL1 WILD-TYPE 63 43 37 14 52 19 21 33 50
'PIWIL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S15236.  Gene #1506: 'PIWIL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PIWIL1 MUTATED 0 2 1 0 2 0
PIWIL1 WILD-TYPE 13 14 13 11 9 9
'PIWIL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S15237.  Gene #1506: 'PIWIL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PIWIL1 MUTATED 1 1 1 1 1 0 0 0 0
PIWIL1 WILD-TYPE 10 6 6 8 7 7 11 9 5
'ZNF546 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 0.3

Table S15238.  Gene #1507: 'ZNF546 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF546 MUTATED 3 0 0 2 0
ZNF546 WILD-TYPE 29 18 46 25 23
'ZNF546 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S15239.  Gene #1507: 'ZNF546 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF546 MUTATED 3 1 1
ZNF546 WILD-TYPE 40 66 35
'ZNF546 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00191 (Fisher's exact test), Q value = 0.037

Table S15240.  Gene #1507: 'ZNF546 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF546 MUTATED 0 2 13
ZNF546 WILD-TYPE 42 171 134

Figure S3880.  Get High-res Image Gene #1507: 'ZNF546 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF546 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S15241.  Gene #1507: 'ZNF546 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF546 MUTATED 3 3 5
ZNF546 WILD-TYPE 59 70 70
'ZNF546 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S15242.  Gene #1507: 'ZNF546 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF546 MUTATED 4 5 4
ZNF546 WILD-TYPE 66 115 96
'ZNF546 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S15243.  Gene #1507: 'ZNF546 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF546 MUTATED 2 1 1 1 2 3 2 1 0
ZNF546 WILD-TYPE 39 25 29 28 37 66 18 13 22
'ZNF546 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S15244.  Gene #1507: 'ZNF546 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF546 MUTATED 3 4 2 6
ZNF546 WILD-TYPE 97 68 70 115
'ZNF546 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.91

Table S15245.  Gene #1507: 'ZNF546 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF546 MUTATED 3 3 3 3 3
ZNF546 WILD-TYPE 56 72 71 116 35
'ZNF546 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S15246.  Gene #1507: 'ZNF546 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF546 MUTATED 1 3 2 2 6
ZNF546 WILD-TYPE 50 73 59 69 89
'ZNF546 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S15247.  Gene #1507: 'ZNF546 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF546 MUTATED 2 2 0 1 3 1 0 3 2
ZNF546 WILD-TYPE 67 46 39 15 50 19 21 35 48
'ZNF643 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S15248.  Gene #1508: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF643 MUTATED 1 0 0 2 0
ZNF643 WILD-TYPE 31 18 46 25 23
'ZNF643 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15249.  Gene #1508: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF643 MUTATED 1 1 1
ZNF643 WILD-TYPE 42 66 35
'ZNF643 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S15250.  Gene #1508: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF643 MUTATED 1 2 6
ZNF643 WILD-TYPE 41 171 141
'ZNF643 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15251.  Gene #1508: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF643 MUTATED 2 2 2
ZNF643 WILD-TYPE 60 71 73
'ZNF643 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S15252.  Gene #1508: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF643 MUTATED 0 3 4
ZNF643 WILD-TYPE 70 117 96
'ZNF643 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.83

Table S15253.  Gene #1508: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF643 MUTATED 0 0 2 0 1 4 0 0 0
ZNF643 WILD-TYPE 41 26 28 29 38 65 20 14 22
'ZNF643 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S15254.  Gene #1508: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF643 MUTATED 2 3 1 3
ZNF643 WILD-TYPE 98 69 71 118
'ZNF643 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S15255.  Gene #1508: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF643 MUTATED 0 5 1 2 1
ZNF643 WILD-TYPE 59 70 73 117 37
'ZNF643 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S15256.  Gene #1508: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF643 MUTATED 0 3 1 2 2
ZNF643 WILD-TYPE 51 73 60 69 93
'ZNF643 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.97

Table S15257.  Gene #1508: 'ZNF643 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF643 MUTATED 4 1 0 0 1 1 0 0 1
ZNF643 WILD-TYPE 65 47 39 16 52 19 21 38 49
'ANK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00048 (Fisher's exact test), Q value = 0.016

Table S15258.  Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ANK3 MUTATED 10 0 2 3 0
ANK3 WILD-TYPE 22 18 44 24 23

Figure S3881.  Get High-res Image Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ANK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00451 (Fisher's exact test), Q value = 0.062

Table S15259.  Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ANK3 MUTATED 10 4 1
ANK3 WILD-TYPE 33 63 35

Figure S3882.  Get High-res Image Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ANK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S15260.  Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ANK3 MUTATED 2 6 40
ANK3 WILD-TYPE 40 167 107

Figure S3883.  Get High-res Image Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ANK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.2

Table S15261.  Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ANK3 MUTATED 13 5 14
ANK3 WILD-TYPE 49 68 61

Figure S3884.  Get High-res Image Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ANK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S15262.  Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ANK3 MUTATED 8 14 20
ANK3 WILD-TYPE 62 106 80
'ANK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S15263.  Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ANK3 MUTATED 5 6 3 2 4 17 2 2 1
ANK3 WILD-TYPE 36 20 27 27 35 52 18 12 21
'ANK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.019

Table S15264.  Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ANK3 MUTATED 4 18 10 16
ANK3 WILD-TYPE 96 54 62 105

Figure S3885.  Get High-res Image Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ANK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S15265.  Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ANK3 MUTATED 2 6 23 7 10
ANK3 WILD-TYPE 57 69 51 112 28

Figure S3886.  Get High-res Image Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00294 (Fisher's exact test), Q value = 0.047

Table S15266.  Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ANK3 MUTATED 4 18 5 3 16
ANK3 WILD-TYPE 47 58 56 68 79

Figure S3887.  Get High-res Image Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ANK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.012

Table S15267.  Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ANK3 MUTATED 8 7 2 8 3 5 3 8 2
ANK3 WILD-TYPE 61 41 37 8 50 15 18 30 48

Figure S3888.  Get High-res Image Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ANK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.093 (Fisher's exact test), Q value = 0.33

Table S15268.  Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ANK3 MUTATED 1 1 2 0 4 0
ANK3 WILD-TYPE 12 15 12 11 7 9
'ANK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0782 (Fisher's exact test), Q value = 0.3

Table S15269.  Gene #1509: 'ANK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ANK3 MUTATED 0 0 0 3 1 0 3 0 1
ANK3 WILD-TYPE 11 7 7 6 7 7 8 9 4
'KRT25 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0537 (Fisher's exact test), Q value = 0.25

Table S15270.  Gene #1510: 'KRT25 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KRT25 MUTATED 3 0 0 0 0
KRT25 WILD-TYPE 29 18 46 27 23
'KRT25 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0382 (Fisher's exact test), Q value = 0.21

Table S15271.  Gene #1510: 'KRT25 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KRT25 MUTATED 3 0 0
KRT25 WILD-TYPE 40 67 36

Figure S3889.  Get High-res Image Gene #1510: 'KRT25 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KRT25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S15272.  Gene #1510: 'KRT25 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KRT25 MUTATED 0 4 6
KRT25 WILD-TYPE 42 169 141
'KRT25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 0.31

Table S15273.  Gene #1510: 'KRT25 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KRT25 MUTATED 4 0 3
KRT25 WILD-TYPE 58 73 72
'KRT25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S15274.  Gene #1510: 'KRT25 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KRT25 MUTATED 0 1 6
KRT25 WILD-TYPE 70 119 94

Figure S3890.  Get High-res Image Gene #1510: 'KRT25 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KRT25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S15275.  Gene #1510: 'KRT25 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KRT25 MUTATED 2 0 0 0 1 4 0 0 0
KRT25 WILD-TYPE 39 26 30 29 38 65 20 14 22
'KRT25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S15276.  Gene #1510: 'KRT25 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KRT25 MUTATED 3 1 3 3
KRT25 WILD-TYPE 97 71 69 118
'KRT25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0342 (Fisher's exact test), Q value = 0.2

Table S15277.  Gene #1510: 'KRT25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KRT25 MUTATED 2 3 2 0 3
KRT25 WILD-TYPE 57 72 72 119 35

Figure S3891.  Get High-res Image Gene #1510: 'KRT25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KRT25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.46

Table S15278.  Gene #1510: 'KRT25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KRT25 MUTATED 2 4 2 0 1
KRT25 WILD-TYPE 49 72 59 71 94
'KRT25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S15279.  Gene #1510: 'KRT25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KRT25 MUTATED 4 1 0 0 2 0 1 1 0
KRT25 WILD-TYPE 65 47 39 16 51 20 20 37 50
'ACTA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00774 (Fisher's exact test), Q value = 0.082

Table S15280.  Gene #1511: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ACTA1 MUTATED 2 1 9
ACTA1 WILD-TYPE 40 172 138

Figure S3892.  Get High-res Image Gene #1511: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ACTA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.21

Table S15281.  Gene #1511: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ACTA1 MUTATED 5 0 4
ACTA1 WILD-TYPE 57 73 71

Figure S3893.  Get High-res Image Gene #1511: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ACTA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S15282.  Gene #1511: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ACTA1 MUTATED 0 5 5
ACTA1 WILD-TYPE 70 115 95
'ACTA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S15283.  Gene #1511: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ACTA1 MUTATED 2 0 1 2 1 3 0 1 0
ACTA1 WILD-TYPE 39 26 29 27 38 66 20 13 22
'ACTA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S15284.  Gene #1511: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ACTA1 MUTATED 1 4 4 3
ACTA1 WILD-TYPE 99 68 68 118
'ACTA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0084

Table S15285.  Gene #1511: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ACTA1 MUTATED 2 0 7 0 3
ACTA1 WILD-TYPE 57 75 67 119 35

Figure S3894.  Get High-res Image Gene #1511: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ACTA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.23

Table S15286.  Gene #1511: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ACTA1 MUTATED 0 3 6 1 2
ACTA1 WILD-TYPE 51 73 55 70 93

Figure S3895.  Get High-res Image Gene #1511: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ACTA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.89

Table S15287.  Gene #1511: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ACTA1 MUTATED 2 3 1 1 1 1 1 2 0
ACTA1 WILD-TYPE 67 45 38 15 52 19 20 36 50
'ACTA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S15288.  Gene #1511: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ACTA1 MUTATED 0 0 2 1 1 1
ACTA1 WILD-TYPE 13 16 12 10 10 8
'ACTA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 0.97

Table S15289.  Gene #1511: 'ACTA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ACTA1 MUTATED 0 0 0 1 1 1 1 0 1
ACTA1 WILD-TYPE 11 7 7 8 7 6 10 9 4
'RNF10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.076 (Fisher's exact test), Q value = 0.3

Table S15290.  Gene #1512: 'RNF10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RNF10 MUTATED 3 0 0 2 0
RNF10 WILD-TYPE 29 18 46 25 23
'RNF10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0671 (Fisher's exact test), Q value = 0.28

Table S15291.  Gene #1512: 'RNF10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RNF10 MUTATED 4 1 0
RNF10 WILD-TYPE 39 66 36
'RNF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0638 (Fisher's exact test), Q value = 0.27

Table S15292.  Gene #1512: 'RNF10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RNF10 MUTATED 2 2 8
RNF10 WILD-TYPE 40 171 139
'RNF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0769 (Fisher's exact test), Q value = 0.3

Table S15293.  Gene #1512: 'RNF10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RNF10 MUTATED 4 0 4
RNF10 WILD-TYPE 58 73 71
'RNF10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S15294.  Gene #1512: 'RNF10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RNF10 MUTATED 1 4 7
RNF10 WILD-TYPE 69 116 93
'RNF10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S15295.  Gene #1512: 'RNF10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RNF10 MUTATED 1 1 2 0 2 5 1 0 0
RNF10 WILD-TYPE 40 25 28 29 37 64 19 14 22
'RNF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.61

Table S15296.  Gene #1512: 'RNF10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RNF10 MUTATED 1 4 2 6
RNF10 WILD-TYPE 99 68 70 115
'RNF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.46

Table S15297.  Gene #1512: 'RNF10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RNF10 MUTATED 2 2 3 2 4
RNF10 WILD-TYPE 57 73 71 117 34
'RNF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.45

Table S15298.  Gene #1512: 'RNF10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RNF10 MUTATED 0 1 2 3 7
RNF10 WILD-TYPE 51 75 59 68 88
'RNF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S15299.  Gene #1512: 'RNF10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RNF10 MUTATED 2 1 1 0 1 1 0 5 2
RNF10 WILD-TYPE 67 47 38 16 52 19 21 33 48
'ZNF577 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 0.24

Table S15300.  Gene #1513: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF577 MUTATED 1 0 0 3 0
ZNF577 WILD-TYPE 31 18 46 24 23
'ZNF577 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S15301.  Gene #1513: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF577 MUTATED 2 2 0
ZNF577 WILD-TYPE 41 65 36
'ZNF577 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00798 (Fisher's exact test), Q value = 0.084

Table S15302.  Gene #1513: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF577 MUTATED 2 1 9
ZNF577 WILD-TYPE 40 172 138

Figure S3896.  Get High-res Image Gene #1513: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF577 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S15303.  Gene #1513: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF577 MUTATED 5 1 2
ZNF577 WILD-TYPE 57 72 73
'ZNF577 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S15304.  Gene #1513: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF577 MUTATED 3 4 5
ZNF577 WILD-TYPE 67 116 95
'ZNF577 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S15305.  Gene #1513: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF577 MUTATED 2 0 2 2 1 4 0 0 1
ZNF577 WILD-TYPE 39 26 28 27 38 65 20 14 21
'ZNF577 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S15306.  Gene #1513: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF577 MUTATED 1 3 4 4
ZNF577 WILD-TYPE 99 69 68 117
'ZNF577 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S15307.  Gene #1513: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF577 MUTATED 2 1 5 2 2
ZNF577 WILD-TYPE 57 74 69 117 36
'ZNF577 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.63

Table S15308.  Gene #1513: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF577 MUTATED 1 4 3 0 3
ZNF577 WILD-TYPE 50 72 58 71 92
'ZNF577 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S15309.  Gene #1513: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF577 MUTATED 1 3 0 1 4 1 0 1 0
ZNF577 WILD-TYPE 68 45 39 15 49 19 21 37 50
'ZNF577 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.96

Table S15310.  Gene #1513: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF577 MUTATED 0 0 1 1 1 0
ZNF577 WILD-TYPE 13 16 13 10 10 9
'ZNF577 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0421 (Fisher's exact test), Q value = 0.22

Table S15311.  Gene #1513: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF577 MUTATED 0 0 0 0 0 0 3 0 0
ZNF577 WILD-TYPE 11 7 7 9 8 7 8 9 5

Figure S3897.  Get High-res Image Gene #1513: 'ZNF577 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SRGAP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.74

Table S15312.  Gene #1514: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SRGAP3 MUTATED 3 0 1 1 0
SRGAP3 WILD-TYPE 29 18 45 26 23
'SRGAP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S15313.  Gene #1514: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SRGAP3 MUTATED 3 2 0
SRGAP3 WILD-TYPE 40 65 36
'SRGAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S15314.  Gene #1514: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SRGAP3 MUTATED 1 5 10
SRGAP3 WILD-TYPE 41 168 137
'SRGAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0916 (Fisher's exact test), Q value = 0.33

Table S15315.  Gene #1514: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SRGAP3 MUTATED 4 1 7
SRGAP3 WILD-TYPE 58 72 68
'SRGAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S15316.  Gene #1514: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SRGAP3 MUTATED 2 4 7
SRGAP3 WILD-TYPE 68 116 93
'SRGAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S15317.  Gene #1514: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SRGAP3 MUTATED 3 0 2 1 1 5 1 0 0
SRGAP3 WILD-TYPE 38 26 28 28 38 64 19 14 22
'SRGAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S15318.  Gene #1514: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SRGAP3 MUTATED 3 3 6 5
SRGAP3 WILD-TYPE 97 69 66 116
'SRGAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0984 (Fisher's exact test), Q value = 0.34

Table S15319.  Gene #1514: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SRGAP3 MUTATED 2 3 7 2 3
SRGAP3 WILD-TYPE 57 72 67 117 35
'SRGAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.062 (Fisher's exact test), Q value = 0.27

Table S15320.  Gene #1514: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SRGAP3 MUTATED 1 6 5 0 5
SRGAP3 WILD-TYPE 50 70 56 71 90
'SRGAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00089 (Fisher's exact test), Q value = 0.023

Table S15321.  Gene #1514: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SRGAP3 MUTATED 1 7 0 2 2 0 0 5 0
SRGAP3 WILD-TYPE 68 41 39 14 51 20 21 33 50

Figure S3898.  Get High-res Image Gene #1514: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SRGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S15322.  Gene #1514: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SRGAP3 MUTATED 0 1 1 0 1 1
SRGAP3 WILD-TYPE 13 15 13 11 10 8
'SRGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S15323.  Gene #1514: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SRGAP3 MUTATED 0 0 0 1 0 2 1 0 0
SRGAP3 WILD-TYPE 11 7 7 8 8 5 10 9 5
'ZMYND8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S15324.  Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZMYND8 MUTATED 2 0 1 2 0
ZMYND8 WILD-TYPE 30 18 45 25 23
'ZMYND8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S15325.  Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZMYND8 MUTATED 3 1 1
ZMYND8 WILD-TYPE 40 66 35
'ZMYND8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.099

Table S15326.  Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZMYND8 MUTATED 3 5 16
ZMYND8 WILD-TYPE 39 168 131

Figure S3899.  Get High-res Image Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZMYND8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00723 (Fisher's exact test), Q value = 0.08

Table S15327.  Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZMYND8 MUTATED 4 2 13
ZMYND8 WILD-TYPE 58 71 62

Figure S3900.  Get High-res Image Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZMYND8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S15328.  Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZMYND8 MUTATED 2 7 9
ZMYND8 WILD-TYPE 68 113 91
'ZMYND8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S15329.  Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZMYND8 MUTATED 1 2 1 3 0 7 1 2 1
ZMYND8 WILD-TYPE 40 24 29 26 39 62 19 12 21
'ZMYND8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00178 (Fisher's exact test), Q value = 0.035

Table S15330.  Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZMYND8 MUTATED 3 13 3 6
ZMYND8 WILD-TYPE 97 59 69 115

Figure S3901.  Get High-res Image Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZMYND8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0079

Table S15331.  Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZMYND8 MUTATED 0 6 13 3 3
ZMYND8 WILD-TYPE 59 69 61 116 35

Figure S3902.  Get High-res Image Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.32

Table S15332.  Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZMYND8 MUTATED 4 9 1 2 8
ZMYND8 WILD-TYPE 47 67 60 69 87
'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.13

Table S15333.  Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZMYND8 MUTATED 5 1 0 4 4 4 1 3 2
ZMYND8 WILD-TYPE 64 47 39 12 49 16 20 35 48

Figure S3903.  Get High-res Image Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S15334.  Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZMYND8 MUTATED 0 1 1 0 2 1
ZMYND8 WILD-TYPE 13 15 13 11 9 8
'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S15335.  Gene #1515: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZMYND8 MUTATED 1 0 0 2 0 0 0 1 1
ZMYND8 WILD-TYPE 10 7 7 7 8 7 11 8 4
'KIAA0319 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.78

Table S15336.  Gene #1516: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIAA0319 MUTATED 3 1 1 1 0
KIAA0319 WILD-TYPE 29 17 45 26 23
'KIAA0319 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15337.  Gene #1516: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIAA0319 MUTATED 2 3 1
KIAA0319 WILD-TYPE 41 64 35
'KIAA0319 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.2

Table S15338.  Gene #1516: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA0319 MUTATED 0 4 11
KIAA0319 WILD-TYPE 42 169 136

Figure S3904.  Get High-res Image Gene #1516: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0319 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.19

Table S15339.  Gene #1516: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA0319 MUTATED 3 0 6
KIAA0319 WILD-TYPE 59 73 69

Figure S3905.  Get High-res Image Gene #1516: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KIAA0319 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S15340.  Gene #1516: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA0319 MUTATED 1 5 6
KIAA0319 WILD-TYPE 69 115 94
'KIAA0319 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S15341.  Gene #1516: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA0319 MUTATED 2 1 2 0 1 4 2 0 0
KIAA0319 WILD-TYPE 39 25 28 29 38 65 18 14 22
'KIAA0319 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00132 (Fisher's exact test), Q value = 0.03

Table S15342.  Gene #1516: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA0319 MUTATED 0 8 1 6
KIAA0319 WILD-TYPE 100 64 71 115

Figure S3906.  Get High-res Image Gene #1516: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIAA0319 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 0.94

Table S15343.  Gene #1516: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA0319 MUTATED 1 3 5 4 2
KIAA0319 WILD-TYPE 58 72 69 115 36
'KIAA0319 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S15344.  Gene #1516: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA0319 MUTATED 0 7 1 3 4
KIAA0319 WILD-TYPE 51 69 60 68 91
'KIAA0319 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0733 (Fisher's exact test), Q value = 0.29

Table S15345.  Gene #1516: 'KIAA0319 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA0319 MUTATED 1 1 0 3 3 1 0 2 4
KIAA0319 WILD-TYPE 68 47 39 13 50 19 21 36 46
'PUS7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.15

Table S15346.  Gene #1517: 'PUS7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PUS7 MUTATED 5 0 0 1 1
PUS7 WILD-TYPE 27 18 46 26 22

Figure S3907.  Get High-res Image Gene #1517: 'PUS7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PUS7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0435 (Fisher's exact test), Q value = 0.22

Table S15347.  Gene #1517: 'PUS7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PUS7 MUTATED 5 1 1
PUS7 WILD-TYPE 38 66 35

Figure S3908.  Get High-res Image Gene #1517: 'PUS7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PUS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00162 (Fisher's exact test), Q value = 0.033

Table S15348.  Gene #1517: 'PUS7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PUS7 MUTATED 0 1 11
PUS7 WILD-TYPE 42 172 136

Figure S3909.  Get High-res Image Gene #1517: 'PUS7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PUS7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0832 (Fisher's exact test), Q value = 0.31

Table S15349.  Gene #1517: 'PUS7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PUS7 MUTATED 4 0 3
PUS7 WILD-TYPE 58 73 72
'PUS7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.25

Table S15350.  Gene #1517: 'PUS7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PUS7 MUTATED 0 4 7
PUS7 WILD-TYPE 70 116 93
'PUS7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S15351.  Gene #1517: 'PUS7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PUS7 MUTATED 1 1 2 0 1 5 1 0 0
PUS7 WILD-TYPE 40 25 28 29 38 64 19 14 22
'PUS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0483 (Fisher's exact test), Q value = 0.24

Table S15352.  Gene #1517: 'PUS7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PUS7 MUTATED 0 2 4 7
PUS7 WILD-TYPE 100 70 68 114

Figure S3910.  Get High-res Image Gene #1517: 'PUS7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PUS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00228 (Fisher's exact test), Q value = 0.04

Table S15353.  Gene #1517: 'PUS7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PUS7 MUTATED 1 0 5 2 5
PUS7 WILD-TYPE 58 75 69 117 33

Figure S3911.  Get High-res Image Gene #1517: 'PUS7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PUS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S15354.  Gene #1517: 'PUS7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PUS7 MUTATED 0 3 3 1 4
PUS7 WILD-TYPE 51 73 58 70 91
'PUS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00655 (Fisher's exact test), Q value = 0.076

Table S15355.  Gene #1517: 'PUS7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PUS7 MUTATED 0 4 0 2 0 1 0 3 1
PUS7 WILD-TYPE 69 44 39 14 53 19 21 35 49

Figure S3912.  Get High-res Image Gene #1517: 'PUS7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DCLRE1C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 0.2

Table S15356.  Gene #1518: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DCLRE1C MUTATED 1 1 7
DCLRE1C WILD-TYPE 41 172 140

Figure S3913.  Get High-res Image Gene #1518: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DCLRE1C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S15357.  Gene #1518: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DCLRE1C MUTATED 2 1 4
DCLRE1C WILD-TYPE 60 72 71
'DCLRE1C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15358.  Gene #1518: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DCLRE1C MUTATED 2 4 3
DCLRE1C WILD-TYPE 68 116 97
'DCLRE1C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S15359.  Gene #1518: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DCLRE1C MUTATED 1 1 1 2 2 1 0 0 1
DCLRE1C WILD-TYPE 40 25 29 27 37 68 20 14 21
'DCLRE1C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S15360.  Gene #1518: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DCLRE1C MUTATED 1 4 2 2
DCLRE1C WILD-TYPE 99 68 70 119
'DCLRE1C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0348 (Fisher's exact test), Q value = 0.2

Table S15361.  Gene #1518: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DCLRE1C MUTATED 2 1 4 0 2
DCLRE1C WILD-TYPE 57 74 70 119 36

Figure S3914.  Get High-res Image Gene #1518: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DCLRE1C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S15362.  Gene #1518: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DCLRE1C MUTATED 2 3 1 0 3
DCLRE1C WILD-TYPE 49 73 60 71 92
'DCLRE1C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.55

Table S15363.  Gene #1518: 'DCLRE1C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DCLRE1C MUTATED 3 1 1 1 0 0 0 3 0
DCLRE1C WILD-TYPE 66 47 38 15 53 20 21 35 50
'TEX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.013

Table S15364.  Gene #1519: 'TEX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TEX2 MUTATED 1 0 11
TEX2 WILD-TYPE 41 173 136

Figure S3915.  Get High-res Image Gene #1519: 'TEX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TEX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 0.21

Table S15365.  Gene #1519: 'TEX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TEX2 MUTATED 4 0 6
TEX2 WILD-TYPE 58 73 69

Figure S3916.  Get High-res Image Gene #1519: 'TEX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TEX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S15366.  Gene #1519: 'TEX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TEX2 MUTATED 1 4 6
TEX2 WILD-TYPE 69 116 94
'TEX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S15367.  Gene #1519: 'TEX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TEX2 MUTATED 1 1 1 1 0 5 2 0 0
TEX2 WILD-TYPE 40 25 29 28 39 64 18 14 22
'TEX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S15368.  Gene #1519: 'TEX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TEX2 MUTATED 0 8 3 1
TEX2 WILD-TYPE 100 64 69 120

Figure S3917.  Get High-res Image Gene #1519: 'TEX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TEX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00823 (Fisher's exact test), Q value = 0.085

Table S15369.  Gene #1519: 'TEX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TEX2 MUTATED 1 1 8 2 0
TEX2 WILD-TYPE 58 74 66 117 38

Figure S3918.  Get High-res Image Gene #1519: 'TEX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TEX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S15370.  Gene #1519: 'TEX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TEX2 MUTATED 0 7 1 0 4
TEX2 WILD-TYPE 51 69 60 71 91

Figure S3919.  Get High-res Image Gene #1519: 'TEX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TEX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.41

Table S15371.  Gene #1519: 'TEX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TEX2 MUTATED 1 4 0 2 1 1 0 2 1
TEX2 WILD-TYPE 68 44 39 14 52 19 21 36 49
'TEX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0065 (Fisher's exact test), Q value = 0.075

Table S15372.  Gene #1519: 'TEX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TEX2 MUTATED 0 0 0 0 3 0
TEX2 WILD-TYPE 13 16 14 11 8 9

Figure S3920.  Get High-res Image Gene #1519: 'TEX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TEX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S15373.  Gene #1519: 'TEX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TEX2 MUTATED 0 0 0 1 0 0 2 0 0
TEX2 WILD-TYPE 11 7 7 8 8 7 9 9 5
'BRD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.37

Table S15374.  Gene #1520: 'BRD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BRD4 MUTATED 3 1 0 1 0
BRD4 WILD-TYPE 29 17 46 26 23
'BRD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0232 (Fisher's exact test), Q value = 0.16

Table S15375.  Gene #1520: 'BRD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BRD4 MUTATED 4 0 1
BRD4 WILD-TYPE 39 67 35

Figure S3921.  Get High-res Image Gene #1520: 'BRD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BRD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.11

Table S15376.  Gene #1520: 'BRD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BRD4 MUTATED 1 4 14
BRD4 WILD-TYPE 41 169 133

Figure S3922.  Get High-res Image Gene #1520: 'BRD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BRD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S15377.  Gene #1520: 'BRD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BRD4 MUTATED 6 2 7
BRD4 WILD-TYPE 56 71 68
'BRD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S15378.  Gene #1520: 'BRD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BRD4 MUTATED 2 6 10
BRD4 WILD-TYPE 68 114 90
'BRD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S15379.  Gene #1520: 'BRD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BRD4 MUTATED 2 3 1 1 2 8 1 0 0
BRD4 WILD-TYPE 39 23 29 28 37 61 19 14 22
'BRD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.88

Table S15380.  Gene #1520: 'BRD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BRD4 MUTATED 3 5 5 7
BRD4 WILD-TYPE 97 67 67 114
'BRD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S15381.  Gene #1520: 'BRD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BRD4 MUTATED 1 3 9 3 4
BRD4 WILD-TYPE 58 72 65 116 34

Figure S3923.  Get High-res Image Gene #1520: 'BRD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BRD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.47

Table S15382.  Gene #1520: 'BRD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BRD4 MUTATED 2 9 2 2 5
BRD4 WILD-TYPE 49 67 59 69 90
'BRD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S15383.  Gene #1520: 'BRD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BRD4 MUTATED 4 4 0 2 4 1 1 3 1
BRD4 WILD-TYPE 65 44 39 14 49 19 20 35 49
'BRD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S15384.  Gene #1520: 'BRD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BRD4 MUTATED 1 1 1 0 2 0
BRD4 WILD-TYPE 12 15 13 11 9 9
'BRD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S15385.  Gene #1520: 'BRD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BRD4 MUTATED 0 0 0 1 0 1 2 1 0
BRD4 WILD-TYPE 11 7 7 8 8 6 9 8 5
'ZMIZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0869 (Fisher's exact test), Q value = 0.32

Table S15386.  Gene #1521: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZMIZ1 MUTATED 0 2 7
ZMIZ1 WILD-TYPE 42 171 140
'ZMIZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.93

Table S15387.  Gene #1521: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZMIZ1 MUTATED 1 2 4
ZMIZ1 WILD-TYPE 61 71 71
'ZMIZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S15388.  Gene #1521: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZMIZ1 MUTATED 1 1 5
ZMIZ1 WILD-TYPE 69 119 95
'ZMIZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S15389.  Gene #1521: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZMIZ1 MUTATED 0 0 0 1 0 5 0 1 0
ZMIZ1 WILD-TYPE 41 26 30 28 39 64 20 13 22
'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.74

Table S15390.  Gene #1521: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZMIZ1 MUTATED 2 4 1 2
ZMIZ1 WILD-TYPE 98 68 71 119
'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 0.12

Table S15391.  Gene #1521: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZMIZ1 MUTATED 0 3 4 0 2
ZMIZ1 WILD-TYPE 59 72 70 119 36

Figure S3924.  Get High-res Image Gene #1521: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.45

Table S15392.  Gene #1521: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZMIZ1 MUTATED 1 5 1 0 2
ZMIZ1 WILD-TYPE 50 71 60 71 93
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S15393.  Gene #1521: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZMIZ1 MUTATED 3 1 1 2 0 0 0 2 0
ZMIZ1 WILD-TYPE 66 47 38 14 53 20 21 36 50
'SLC44A4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S15394.  Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC44A4 MUTATED 2 0 0 1 0
SLC44A4 WILD-TYPE 30 18 46 26 23
'SLC44A4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15395.  Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC44A4 MUTATED 1 1 1
SLC44A4 WILD-TYPE 42 66 35
'SLC44A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00068 (Fisher's exact test), Q value = 0.019

Table S15396.  Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC44A4 MUTATED 2 0 10
SLC44A4 WILD-TYPE 40 173 137

Figure S3925.  Get High-res Image Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC44A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.2

Table S15397.  Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC44A4 MUTATED 3 0 6
SLC44A4 WILD-TYPE 59 73 69

Figure S3926.  Get High-res Image Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SLC44A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S15398.  Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC44A4 MUTATED 0 6 5
SLC44A4 WILD-TYPE 70 114 95
'SLC44A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S15399.  Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC44A4 MUTATED 0 1 1 3 1 5 0 0 0
SLC44A4 WILD-TYPE 41 25 29 26 38 64 20 14 22
'SLC44A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S15400.  Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC44A4 MUTATED 0 6 3 3
SLC44A4 WILD-TYPE 100 66 69 118

Figure S3927.  Get High-res Image Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC44A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00353 (Fisher's exact test), Q value = 0.053

Table S15401.  Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC44A4 MUTATED 1 0 8 2 1
SLC44A4 WILD-TYPE 58 75 66 117 37

Figure S3928.  Get High-res Image Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC44A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00744 (Fisher's exact test), Q value = 0.081

Table S15402.  Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC44A4 MUTATED 0 8 1 2 1
SLC44A4 WILD-TYPE 51 68 60 69 94

Figure S3929.  Get High-res Image Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SLC44A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00373 (Fisher's exact test), Q value = 0.055

Table S15403.  Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC44A4 MUTATED 2 3 0 4 2 1 0 0 0
SLC44A4 WILD-TYPE 67 45 39 12 51 19 21 38 50

Figure S3930.  Get High-res Image Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLC44A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00078 (Fisher's exact test), Q value = 0.021

Table S15404.  Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLC44A4 MUTATED 0 0 0 0 4 0
SLC44A4 WILD-TYPE 13 16 14 11 7 9

Figure S3931.  Get High-res Image Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SLC44A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S15405.  Gene #1522: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLC44A4 MUTATED 0 0 0 2 0 1 1 0 0
SLC44A4 WILD-TYPE 11 7 7 7 8 6 10 9 5
'NCF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S15406.  Gene #1523: 'NCF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NCF2 MUTATED 1 2 5
NCF2 WILD-TYPE 41 171 142
'NCF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.62

Table S15407.  Gene #1523: 'NCF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NCF2 MUTATED 4 1 2
NCF2 WILD-TYPE 58 72 73
'NCF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S15408.  Gene #1523: 'NCF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NCF2 MUTATED 1 2 4
NCF2 WILD-TYPE 69 118 96
'NCF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S15409.  Gene #1523: 'NCF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NCF2 MUTATED 1 0 0 0 2 3 1 0 0
NCF2 WILD-TYPE 40 26 30 29 37 66 19 14 22
'NCF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S15410.  Gene #1523: 'NCF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NCF2 MUTATED 2 3 2 1
NCF2 WILD-TYPE 98 69 70 120
'NCF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0673 (Fisher's exact test), Q value = 0.28

Table S15411.  Gene #1523: 'NCF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NCF2 MUTATED 3 1 3 0 1
NCF2 WILD-TYPE 56 74 71 119 37
'NCF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S15412.  Gene #1523: 'NCF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NCF2 MUTATED 1 3 3 0 1
NCF2 WILD-TYPE 50 73 58 71 94
'NCF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.45

Table S15413.  Gene #1523: 'NCF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NCF2 MUTATED 1 1 0 2 2 1 0 1 0
NCF2 WILD-TYPE 68 47 39 14 51 19 21 37 50
'MFRP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.097

Table S15414.  Gene #1524: 'MFRP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MFRP MUTATED 1 1 9
MFRP WILD-TYPE 41 172 138

Figure S3932.  Get High-res Image Gene #1524: 'MFRP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MFRP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S15415.  Gene #1524: 'MFRP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MFRP MUTATED 5 0 4
MFRP WILD-TYPE 57 73 71

Figure S3933.  Get High-res Image Gene #1524: 'MFRP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MFRP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.21

Table S15416.  Gene #1524: 'MFRP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MFRP MUTATED 0 3 7
MFRP WILD-TYPE 70 117 93

Figure S3934.  Get High-res Image Gene #1524: 'MFRP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MFRP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.991 (Fisher's exact test), Q value = 1

Table S15417.  Gene #1524: 'MFRP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MFRP MUTATED 1 1 1 1 1 4 1 0 0
MFRP WILD-TYPE 40 25 29 28 38 65 19 14 22
'MFRP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S15418.  Gene #1524: 'MFRP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MFRP MUTATED 0 5 4 2
MFRP WILD-TYPE 100 67 68 119

Figure S3935.  Get High-res Image Gene #1524: 'MFRP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MFRP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00475 (Fisher's exact test), Q value = 0.064

Table S15419.  Gene #1524: 'MFRP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MFRP MUTATED 2 0 7 1 1
MFRP WILD-TYPE 57 75 67 118 37

Figure S3936.  Get High-res Image Gene #1524: 'MFRP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MFRP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00326 (Fisher's exact test), Q value = 0.05

Table S15420.  Gene #1524: 'MFRP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MFRP MUTATED 0 7 3 0 1
MFRP WILD-TYPE 51 69 58 71 94

Figure S3937.  Get High-res Image Gene #1524: 'MFRP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MFRP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0647 (Fisher's exact test), Q value = 0.27

Table S15421.  Gene #1524: 'MFRP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MFRP MUTATED 4 3 1 2 0 0 1 0 0
MFRP WILD-TYPE 65 45 38 14 53 20 20 38 50
'PKHD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00085 (Fisher's exact test), Q value = 0.022

Table S15422.  Gene #1525: 'PKHD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PKHD1 MUTATED 12 1 4 5 0
PKHD1 WILD-TYPE 20 17 42 22 23

Figure S3938.  Get High-res Image Gene #1525: 'PKHD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PKHD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00521 (Fisher's exact test), Q value = 0.068

Table S15423.  Gene #1525: 'PKHD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PKHD1 MUTATED 13 5 4
PKHD1 WILD-TYPE 30 62 32

Figure S3939.  Get High-res Image Gene #1525: 'PKHD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PKHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0928 (Fisher's exact test), Q value = 0.33

Table S15424.  Gene #1525: 'PKHD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PKHD1 MUTATED 7 20 30
PKHD1 WILD-TYPE 35 153 117
'PKHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15425.  Gene #1525: 'PKHD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PKHD1 MUTATED 11 12 13
PKHD1 WILD-TYPE 51 61 62
'PKHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S15426.  Gene #1525: 'PKHD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PKHD1 MUTATED 6 21 20
PKHD1 WILD-TYPE 64 99 80
'PKHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S15427.  Gene #1525: 'PKHD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PKHD1 MUTATED 7 1 6 5 8 13 3 0 4
PKHD1 WILD-TYPE 34 25 24 24 31 56 17 14 18
'PKHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S15428.  Gene #1525: 'PKHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PKHD1 MUTATED 14 10 11 22
PKHD1 WILD-TYPE 86 62 61 99
'PKHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S15429.  Gene #1525: 'PKHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PKHD1 MUTATED 10 11 12 11 13
PKHD1 WILD-TYPE 49 64 62 108 25

Figure S3940.  Get High-res Image Gene #1525: 'PKHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PKHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.25

Table S15430.  Gene #1525: 'PKHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PKHD1 MUTATED 9 14 5 6 21
PKHD1 WILD-TYPE 42 62 56 65 74
'PKHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S15431.  Gene #1525: 'PKHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PKHD1 MUTATED 11 9 3 4 9 2 3 11 3
PKHD1 WILD-TYPE 58 39 36 12 44 18 18 27 47
'PKHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S15432.  Gene #1525: 'PKHD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PKHD1 MUTATED 2 3 0 1 4 1
PKHD1 WILD-TYPE 11 13 14 10 7 8
'PKHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S15433.  Gene #1525: 'PKHD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PKHD1 MUTATED 3 0 1 2 1 1 2 1 0
PKHD1 WILD-TYPE 8 7 6 7 7 6 9 8 5
'TAF4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S15434.  Gene #1526: 'TAF4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TAF4 MUTATED 2 0 0 0 1
TAF4 WILD-TYPE 30 18 46 27 22
'TAF4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S15435.  Gene #1526: 'TAF4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TAF4 MUTATED 2 1 0
TAF4 WILD-TYPE 41 66 36
'TAF4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15436.  Gene #1526: 'TAF4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TAF4 MUTATED 1 4 4
TAF4 WILD-TYPE 41 169 143
'TAF4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15437.  Gene #1526: 'TAF4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TAF4 MUTATED 1 2 2
TAF4 WILD-TYPE 61 71 73
'TAF4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S15438.  Gene #1526: 'TAF4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TAF4 MUTATED 3 2 1
TAF4 WILD-TYPE 67 118 99
'TAF4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S15439.  Gene #1526: 'TAF4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TAF4 MUTATED 1 1 1 0 2 0 0 1 0
TAF4 WILD-TYPE 40 25 29 29 37 69 20 13 22
'TAF4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S15440.  Gene #1526: 'TAF4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TAF4 MUTATED 2 2 1 4
TAF4 WILD-TYPE 98 70 71 117
'TAF4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.47

Table S15441.  Gene #1526: 'TAF4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TAF4 MUTATED 1 2 2 1 3
TAF4 WILD-TYPE 58 73 72 118 35
'TAF4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S15442.  Gene #1526: 'TAF4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TAF4 MUTATED 2 1 0 2 4
TAF4 WILD-TYPE 49 75 61 69 91
'TAF4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S15443.  Gene #1526: 'TAF4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TAF4 MUTATED 0 1 0 1 2 1 0 3 1
TAF4 WILD-TYPE 69 47 39 15 51 19 21 35 49
'USP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00074 (Fisher's exact test), Q value = 0.021

Table S15444.  Gene #1527: 'USP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
USP1 MUTATED 0 0 9
USP1 WILD-TYPE 42 173 138

Figure S3941.  Get High-res Image Gene #1527: 'USP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'USP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S15445.  Gene #1527: 'USP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
USP1 MUTATED 6 0 3
USP1 WILD-TYPE 56 73 72

Figure S3942.  Get High-res Image Gene #1527: 'USP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'USP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S15446.  Gene #1527: 'USP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
USP1 MUTATED 2 2 5
USP1 WILD-TYPE 68 118 95
'USP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S15447.  Gene #1527: 'USP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
USP1 MUTATED 1 1 0 1 0 4 2 0 0
USP1 WILD-TYPE 40 25 30 28 39 65 18 14 22
'USP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00235 (Fisher's exact test), Q value = 0.041

Table S15448.  Gene #1527: 'USP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
USP1 MUTATED 0 2 6 1
USP1 WILD-TYPE 100 70 66 120

Figure S3943.  Get High-res Image Gene #1527: 'USP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'USP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00232 (Fisher's exact test), Q value = 0.041

Table S15449.  Gene #1527: 'USP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
USP1 MUTATED 1 0 7 1 0
USP1 WILD-TYPE 58 75 67 118 38

Figure S3944.  Get High-res Image Gene #1527: 'USP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'USP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00305 (Fisher's exact test), Q value = 0.048

Table S15450.  Gene #1527: 'USP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
USP1 MUTATED 0 7 1 0 1
USP1 WILD-TYPE 51 69 60 71 94

Figure S3945.  Get High-res Image Gene #1527: 'USP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'USP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0433 (Fisher's exact test), Q value = 0.22

Table S15451.  Gene #1527: 'USP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
USP1 MUTATED 2 4 0 2 0 0 0 0 1
USP1 WILD-TYPE 67 44 39 14 53 20 21 38 49

Figure S3946.  Get High-res Image Gene #1527: 'USP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'USP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S15452.  Gene #1527: 'USP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
USP1 MUTATED 0 1 0 0 2 0
USP1 WILD-TYPE 13 15 14 11 9 9
'USP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S15453.  Gene #1527: 'USP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
USP1 MUTATED 1 0 0 0 1 0 1 0 0
USP1 WILD-TYPE 10 7 7 9 7 7 10 9 5
'TRHDE MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S15454.  Gene #1528: 'TRHDE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TRHDE MUTATED 4 0 1 2 1
TRHDE WILD-TYPE 28 18 45 25 22
'TRHDE MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S15455.  Gene #1528: 'TRHDE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TRHDE MUTATED 5 2 1
TRHDE WILD-TYPE 38 65 35
'TRHDE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00254 (Fisher's exact test), Q value = 0.043

Table S15456.  Gene #1528: 'TRHDE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRHDE MUTATED 0 8 19
TRHDE WILD-TYPE 42 165 128

Figure S3947.  Get High-res Image Gene #1528: 'TRHDE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRHDE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 0.24

Table S15457.  Gene #1528: 'TRHDE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRHDE MUTATED 8 2 9
TRHDE WILD-TYPE 54 71 66
'TRHDE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0902 (Fisher's exact test), Q value = 0.33

Table S15458.  Gene #1528: 'TRHDE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRHDE MUTATED 4 5 12
TRHDE WILD-TYPE 66 115 88
'TRHDE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S15459.  Gene #1528: 'TRHDE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRHDE MUTATED 4 0 3 1 2 8 2 1 0
TRHDE WILD-TYPE 37 26 27 28 37 61 18 13 22
'TRHDE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0998 (Fisher's exact test), Q value = 0.34

Table S15460.  Gene #1528: 'TRHDE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRHDE MUTATED 3 8 8 8
TRHDE WILD-TYPE 97 64 64 113
'TRHDE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.078 (Fisher's exact test), Q value = 0.3

Table S15461.  Gene #1528: 'TRHDE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRHDE MUTATED 5 4 10 4 4
TRHDE WILD-TYPE 54 71 64 115 34
'TRHDE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S15462.  Gene #1528: 'TRHDE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRHDE MUTATED 0 9 4 6 7
TRHDE WILD-TYPE 51 67 57 65 88
'TRHDE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S15463.  Gene #1528: 'TRHDE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRHDE MUTATED 7 4 0 3 3 2 1 3 3
TRHDE WILD-TYPE 62 44 39 13 50 18 20 35 47
'TRHDE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S15464.  Gene #1528: 'TRHDE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TRHDE MUTATED 0 1 4 1 1 1
TRHDE WILD-TYPE 13 15 10 10 10 8
'TRHDE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S15465.  Gene #1528: 'TRHDE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TRHDE MUTATED 1 0 0 0 3 1 3 0 0
TRHDE WILD-TYPE 10 7 7 9 5 6 8 9 5
'STK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.2

Table S15466.  Gene #1529: 'STK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STK3 MUTATED 1 1 7
STK3 WILD-TYPE 41 172 140

Figure S3948.  Get High-res Image Gene #1529: 'STK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S15467.  Gene #1529: 'STK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STK3 MUTATED 2 1 3
STK3 WILD-TYPE 60 72 72
'STK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S15468.  Gene #1529: 'STK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STK3 MUTATED 0 6 3
STK3 WILD-TYPE 70 114 97
'STK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S15469.  Gene #1529: 'STK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STK3 MUTATED 0 1 1 1 2 2 0 1 1
STK3 WILD-TYPE 41 25 29 28 37 67 20 13 21
'STK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S15470.  Gene #1529: 'STK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STK3 MUTATED 0 3 2 4
STK3 WILD-TYPE 100 69 70 117
'STK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0678 (Fisher's exact test), Q value = 0.28

Table S15471.  Gene #1529: 'STK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STK3 MUTATED 0 2 3 1 3
STK3 WILD-TYPE 59 73 71 118 35
'STK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S15472.  Gene #1529: 'STK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STK3 MUTATED 2 3 0 0 4
STK3 WILD-TYPE 49 73 61 71 91
'STK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S15473.  Gene #1529: 'STK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STK3 MUTATED 0 1 0 1 2 1 0 3 1
STK3 WILD-TYPE 69 47 39 15 51 19 21 35 49
'SEC14L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0882 (Fisher's exact test), Q value = 0.32

Table S15474.  Gene #1530: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SEC14L1 MUTATED 0 2 7
SEC14L1 WILD-TYPE 42 171 140
'SEC14L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.73

Table S15475.  Gene #1530: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SEC14L1 MUTATED 2 1 4
SEC14L1 WILD-TYPE 60 72 71
'SEC14L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.18

Table S15476.  Gene #1530: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SEC14L1 MUTATED 1 1 7
SEC14L1 WILD-TYPE 69 119 93

Figure S3949.  Get High-res Image Gene #1530: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SEC14L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0999 (Fisher's exact test), Q value = 0.34

Table S15477.  Gene #1530: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SEC14L1 MUTATED 0 0 2 0 0 5 2 0 0
SEC14L1 WILD-TYPE 41 26 28 29 39 64 18 14 22
'SEC14L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S15478.  Gene #1530: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SEC14L1 MUTATED 1 4 2 3
SEC14L1 WILD-TYPE 99 68 70 118
'SEC14L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00312 (Fisher's exact test), Q value = 0.049

Table S15479.  Gene #1530: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SEC14L1 MUTATED 0 2 5 0 3
SEC14L1 WILD-TYPE 59 73 69 119 35

Figure S3950.  Get High-res Image Gene #1530: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SEC14L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 0.17

Table S15480.  Gene #1530: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SEC14L1 MUTATED 0 6 1 0 2
SEC14L1 WILD-TYPE 51 70 60 71 93

Figure S3951.  Get High-res Image Gene #1530: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SEC14L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S15481.  Gene #1530: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SEC14L1 MUTATED 1 2 1 3 0 0 0 2 0
SEC14L1 WILD-TYPE 68 46 38 13 53 20 21 36 50

Figure S3952.  Get High-res Image Gene #1530: 'SEC14L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IL18R1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S15482.  Gene #1531: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IL18R1 MUTATED 4 0 1 1 1
IL18R1 WILD-TYPE 28 18 45 26 22
'IL18R1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S15483.  Gene #1531: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IL18R1 MUTATED 4 1 2
IL18R1 WILD-TYPE 39 66 34
'IL18R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.45

Table S15484.  Gene #1531: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IL18R1 MUTATED 1 3 8
IL18R1 WILD-TYPE 41 170 139
'IL18R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S15485.  Gene #1531: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IL18R1 MUTATED 2 1 2
IL18R1 WILD-TYPE 60 72 73
'IL18R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S15486.  Gene #1531: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IL18R1 MUTATED 2 3 6
IL18R1 WILD-TYPE 68 117 94
'IL18R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S15487.  Gene #1531: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IL18R1 MUTATED 0 1 2 0 3 4 1 0 0
IL18R1 WILD-TYPE 41 25 28 29 36 65 19 14 22
'IL18R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.55

Table S15488.  Gene #1531: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IL18R1 MUTATED 2 2 1 8
IL18R1 WILD-TYPE 98 70 71 113
'IL18R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S15489.  Gene #1531: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IL18R1 MUTATED 0 1 3 6 3
IL18R1 WILD-TYPE 59 74 71 113 35
'IL18R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 0.26

Table S15490.  Gene #1531: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IL18R1 MUTATED 0 1 1 3 8
IL18R1 WILD-TYPE 51 75 60 68 87
'IL18R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S15491.  Gene #1531: 'IL18R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IL18R1 MUTATED 2 1 0 0 0 1 2 3 4
IL18R1 WILD-TYPE 67 47 39 16 53 19 19 35 46
'TOX MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 0.25

Table S15492.  Gene #1532: 'TOX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TOX MUTATED 5 0 1 2 0
TOX WILD-TYPE 27 18 45 25 23
'TOX MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S15493.  Gene #1532: 'TOX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TOX MUTATED 5 2 1
TOX WILD-TYPE 38 65 35
'TOX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00157 (Fisher's exact test), Q value = 0.033

Table S15494.  Gene #1532: 'TOX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TOX MUTATED 2 1 12
TOX WILD-TYPE 40 172 135

Figure S3953.  Get High-res Image Gene #1532: 'TOX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TOX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S15495.  Gene #1532: 'TOX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TOX MUTATED 3 2 2
TOX WILD-TYPE 59 71 73
'TOX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.76

Table S15496.  Gene #1532: 'TOX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TOX MUTATED 2 4 7
TOX WILD-TYPE 68 116 93
'TOX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 0.75

Table S15497.  Gene #1532: 'TOX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TOX MUTATED 1 1 1 0 3 7 0 0 0
TOX WILD-TYPE 40 25 29 29 36 62 20 14 22
'TOX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S15498.  Gene #1532: 'TOX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TOX MUTATED 2 3 1 9
TOX WILD-TYPE 98 69 71 112
'TOX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0322 (Fisher's exact test), Q value = 0.19

Table S15499.  Gene #1532: 'TOX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TOX MUTATED 0 4 2 4 5
TOX WILD-TYPE 59 71 72 115 33

Figure S3954.  Get High-res Image Gene #1532: 'TOX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TOX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.22

Table S15500.  Gene #1532: 'TOX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TOX MUTATED 0 3 0 3 8
TOX WILD-TYPE 51 73 61 68 87

Figure S3955.  Get High-res Image Gene #1532: 'TOX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TOX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.37

Table S15501.  Gene #1532: 'TOX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TOX MUTATED 1 1 0 1 2 1 0 5 3
TOX WILD-TYPE 68 47 39 15 51 19 21 33 47
'ROCK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S15502.  Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ROCK1 MUTATED 3 1 1 2 0
ROCK1 WILD-TYPE 29 17 45 25 23
'ROCK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0344 (Fisher's exact test), Q value = 0.2

Table S15503.  Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ROCK1 MUTATED 5 2 0
ROCK1 WILD-TYPE 38 65 36

Figure S3956.  Get High-res Image Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ROCK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S15504.  Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ROCK1 MUTATED 1 1 15
ROCK1 WILD-TYPE 41 172 132

Figure S3957.  Get High-res Image Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ROCK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0348 (Fisher's exact test), Q value = 0.2

Table S15505.  Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ROCK1 MUTATED 5 0 5
ROCK1 WILD-TYPE 57 73 70

Figure S3958.  Get High-res Image Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ROCK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.98

Table S15506.  Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ROCK1 MUTATED 2 6 6
ROCK1 WILD-TYPE 68 114 94
'ROCK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.94

Table S15507.  Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ROCK1 MUTATED 1 2 1 3 1 4 2 0 0
ROCK1 WILD-TYPE 40 24 29 26 38 65 18 14 22
'ROCK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.15

Table S15508.  Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ROCK1 MUTATED 0 5 5 7
ROCK1 WILD-TYPE 100 67 67 114

Figure S3959.  Get High-res Image Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ROCK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.094

Table S15509.  Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ROCK1 MUTATED 1 1 8 3 4
ROCK1 WILD-TYPE 58 74 66 116 34

Figure S3960.  Get High-res Image Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ROCK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00159 (Fisher's exact test), Q value = 0.033

Table S15510.  Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ROCK1 MUTATED 0 8 1 0 8
ROCK1 WILD-TYPE 51 68 60 71 87

Figure S3961.  Get High-res Image Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ROCK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00022 (Fisher's exact test), Q value = 0.0096

Table S15511.  Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ROCK1 MUTATED 1 4 0 4 0 2 0 5 1
ROCK1 WILD-TYPE 68 44 39 12 53 18 21 33 49

Figure S3962.  Get High-res Image Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ROCK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00363 (Fisher's exact test), Q value = 0.054

Table S15512.  Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ROCK1 MUTATED 0 0 1 0 4 0
ROCK1 WILD-TYPE 13 16 13 11 7 9

Figure S3963.  Get High-res Image Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ROCK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S15513.  Gene #1533: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ROCK1 MUTATED 0 0 0 2 1 0 2 0 0
ROCK1 WILD-TYPE 11 7 7 7 7 7 9 9 5
'CCDC158 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 0.29

Table S15514.  Gene #1534: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CCDC158 MUTATED 3 0 0 2 0
CCDC158 WILD-TYPE 29 18 46 25 23
'CCDC158 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S15515.  Gene #1534: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CCDC158 MUTATED 3 1 1
CCDC158 WILD-TYPE 40 66 35
'CCDC158 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S15516.  Gene #1534: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCDC158 MUTATED 0 1 15
CCDC158 WILD-TYPE 42 172 132

Figure S3964.  Get High-res Image Gene #1534: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC158 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00649 (Fisher's exact test), Q value = 0.075

Table S15517.  Gene #1534: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCDC158 MUTATED 7 0 4
CCDC158 WILD-TYPE 55 73 71

Figure S3965.  Get High-res Image Gene #1534: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CCDC158 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S15518.  Gene #1534: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCDC158 MUTATED 1 5 8
CCDC158 WILD-TYPE 69 115 92
'CCDC158 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S15519.  Gene #1534: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCDC158 MUTATED 1 2 1 1 1 6 1 1 0
CCDC158 WILD-TYPE 40 24 29 28 38 63 19 13 22
'CCDC158 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S15520.  Gene #1534: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCDC158 MUTATED 0 6 3 7
CCDC158 WILD-TYPE 100 66 69 114

Figure S3966.  Get High-res Image Gene #1534: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CCDC158 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S15521.  Gene #1534: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCDC158 MUTATED 2 1 6 4 3
CCDC158 WILD-TYPE 57 74 68 115 35
'CCDC158 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.77

Table S15522.  Gene #1534: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCDC158 MUTATED 1 5 3 1 6
CCDC158 WILD-TYPE 50 71 58 70 89
'CCDC158 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0701 (Fisher's exact test), Q value = 0.29

Table S15523.  Gene #1534: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCDC158 MUTATED 1 4 0 3 2 1 0 3 2
CCDC158 WILD-TYPE 68 44 39 13 51 19 21 35 48
'CCDC158 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S15524.  Gene #1534: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CCDC158 MUTATED 0 1 1 0 2 0
CCDC158 WILD-TYPE 13 15 13 11 9 9
'CCDC158 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S15525.  Gene #1534: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CCDC158 MUTATED 0 1 0 1 1 0 1 0 0
CCDC158 WILD-TYPE 11 6 7 8 7 7 10 9 5
'XPO4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S15526.  Gene #1535: 'XPO4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
XPO4 MUTATED 2 0 0 1 0
XPO4 WILD-TYPE 30 18 46 26 23
'XPO4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15527.  Gene #1535: 'XPO4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
XPO4 MUTATED 1 1 1
XPO4 WILD-TYPE 42 66 35
'XPO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00446 (Fisher's exact test), Q value = 0.061

Table S15528.  Gene #1535: 'XPO4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
XPO4 MUTATED 1 3 14
XPO4 WILD-TYPE 41 170 133

Figure S3967.  Get High-res Image Gene #1535: 'XPO4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'XPO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S15529.  Gene #1535: 'XPO4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
XPO4 MUTATED 5 1 8
XPO4 WILD-TYPE 57 72 67

Figure S3968.  Get High-res Image Gene #1535: 'XPO4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'XPO4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S15530.  Gene #1535: 'XPO4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
XPO4 MUTATED 2 5 5
XPO4 WILD-TYPE 68 115 95
'XPO4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S15531.  Gene #1535: 'XPO4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
XPO4 MUTATED 2 3 1 2 0 2 1 1 0
XPO4 WILD-TYPE 39 23 29 27 39 67 19 13 22
'XPO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.58

Table S15532.  Gene #1535: 'XPO4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
XPO4 MUTATED 3 6 5 4
XPO4 WILD-TYPE 97 66 67 117
'XPO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S15533.  Gene #1535: 'XPO4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
XPO4 MUTATED 2 4 8 3 1
XPO4 WILD-TYPE 57 71 66 116 37
'XPO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S15534.  Gene #1535: 'XPO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
XPO4 MUTATED 2 7 4 1 4
XPO4 WILD-TYPE 49 69 57 70 91
'XPO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.66

Table S15535.  Gene #1535: 'XPO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
XPO4 MUTATED 2 5 1 2 3 2 1 1 1
XPO4 WILD-TYPE 67 43 38 14 50 18 20 37 49
'XPO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S15536.  Gene #1535: 'XPO4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
XPO4 MUTATED 0 0 0 1 2 1
XPO4 WILD-TYPE 13 16 14 10 9 8
'XPO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S15537.  Gene #1535: 'XPO4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
XPO4 MUTATED 0 0 1 1 0 1 1 0 0
XPO4 WILD-TYPE 11 7 6 8 8 6 10 9 5
'ULK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0093

Table S15538.  Gene #1536: 'ULK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ULK2 MUTATED 1 0 11
ULK2 WILD-TYPE 41 173 136

Figure S3969.  Get High-res Image Gene #1536: 'ULK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ULK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 0.24

Table S15539.  Gene #1536: 'ULK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ULK2 MUTATED 4 0 5
ULK2 WILD-TYPE 58 73 70
'ULK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S15540.  Gene #1536: 'ULK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ULK2 MUTATED 1 3 7
ULK2 WILD-TYPE 69 117 93
'ULK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S15541.  Gene #1536: 'ULK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ULK2 MUTATED 0 0 1 2 1 7 0 0 0
ULK2 WILD-TYPE 41 26 29 27 38 62 20 14 22
'ULK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S15542.  Gene #1536: 'ULK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ULK2 MUTATED 0 6 3 3
ULK2 WILD-TYPE 100 66 69 118

Figure S3970.  Get High-res Image Gene #1536: 'ULK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ULK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0053

Table S15543.  Gene #1536: 'ULK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ULK2 MUTATED 0 1 8 0 3
ULK2 WILD-TYPE 59 74 66 119 35

Figure S3971.  Get High-res Image Gene #1536: 'ULK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ULK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0463 (Fisher's exact test), Q value = 0.23

Table S15544.  Gene #1536: 'ULK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ULK2 MUTATED 0 6 2 0 3
ULK2 WILD-TYPE 51 70 59 71 92

Figure S3972.  Get High-res Image Gene #1536: 'ULK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ULK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00209 (Fisher's exact test), Q value = 0.039

Table S15545.  Gene #1536: 'ULK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ULK2 MUTATED 0 4 0 3 0 0 1 2 1
ULK2 WILD-TYPE 69 44 39 13 53 20 20 36 49

Figure S3973.  Get High-res Image Gene #1536: 'ULK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TMEM62 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S15546.  Gene #1537: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMEM62 MUTATED 0 1 5
TMEM62 WILD-TYPE 42 172 142
'TMEM62 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S15547.  Gene #1537: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TMEM62 MUTATED 1 2 1
TMEM62 WILD-TYPE 61 71 74
'TMEM62 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S15548.  Gene #1537: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TMEM62 MUTATED 0 3 1
TMEM62 WILD-TYPE 70 117 99
'TMEM62 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S15549.  Gene #1537: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TMEM62 MUTATED 1 0 1 1 1 0 0 0 0
TMEM62 WILD-TYPE 40 26 29 28 38 69 20 14 22
'TMEM62 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15550.  Gene #1537: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMEM62 MUTATED 2 1 1 2
TMEM62 WILD-TYPE 98 71 71 119
'TMEM62 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S15551.  Gene #1537: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMEM62 MUTATED 1 2 1 1 1
TMEM62 WILD-TYPE 58 73 73 118 37
'TMEM62 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.88

Table S15552.  Gene #1537: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMEM62 MUTATED 0 1 1 3 1
TMEM62 WILD-TYPE 51 75 60 68 94
'TMEM62 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S15553.  Gene #1537: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMEM62 MUTATED 2 1 0 0 1 1 0 1 0
TMEM62 WILD-TYPE 67 47 39 16 52 19 21 37 50
'ATR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 0.21

Table S15554.  Gene #1538: 'ATR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATR MUTATED 5 0 1 3 0
ATR WILD-TYPE 27 18 45 24 23

Figure S3974.  Get High-res Image Gene #1538: 'ATR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S15555.  Gene #1538: 'ATR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATR MUTATED 5 3 1
ATR WILD-TYPE 38 64 35
'ATR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S15556.  Gene #1538: 'ATR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATR MUTATED 2 9 17
ATR WILD-TYPE 40 164 130
'ATR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15557.  Gene #1538: 'ATR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATR MUTATED 5 7 7
ATR WILD-TYPE 57 66 68
'ATR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S15558.  Gene #1538: 'ATR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATR MUTATED 3 12 8
ATR WILD-TYPE 67 108 92
'ATR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S15559.  Gene #1538: 'ATR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATR MUTATED 2 1 2 3 5 5 2 0 3
ATR WILD-TYPE 39 25 28 26 34 64 18 14 19
'ATR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S15560.  Gene #1538: 'ATR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATR MUTATED 5 8 6 9
ATR WILD-TYPE 95 64 66 112
'ATR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S15561.  Gene #1538: 'ATR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATR MUTATED 3 7 9 3 6
ATR WILD-TYPE 56 68 65 116 32

Figure S3975.  Get High-res Image Gene #1538: 'ATR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S15562.  Gene #1538: 'ATR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATR MUTATED 4 10 2 4 8
ATR WILD-TYPE 47 66 59 67 87
'ATR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.035 (Fisher's exact test), Q value = 0.2

Table S15563.  Gene #1538: 'ATR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATR MUTATED 7 4 1 1 6 4 0 5 0
ATR WILD-TYPE 62 44 38 15 47 16 21 33 50

Figure S3976.  Get High-res Image Gene #1538: 'ATR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S15564.  Gene #1538: 'ATR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ATR MUTATED 1 0 0 1 1 0
ATR WILD-TYPE 12 16 14 10 10 9
'ATR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S15565.  Gene #1538: 'ATR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ATR MUTATED 0 0 0 0 0 0 2 0 1
ATR WILD-TYPE 11 7 7 9 8 7 9 9 4
'FABP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S15566.  Gene #1539: 'FABP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FABP2 MUTATED 1 2 4
FABP2 WILD-TYPE 41 171 143
'FABP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S15567.  Gene #1539: 'FABP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FABP2 MUTATED 1 2 3
FABP2 WILD-TYPE 61 71 72
'FABP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S15568.  Gene #1539: 'FABP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FABP2 MUTATED 0 4 2
FABP2 WILD-TYPE 70 116 98
'FABP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0809 (Fisher's exact test), Q value = 0.31

Table S15569.  Gene #1539: 'FABP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FABP2 MUTATED 1 0 0 0 0 1 1 2 1
FABP2 WILD-TYPE 40 26 30 29 39 68 19 12 21
'FABP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.78

Table S15570.  Gene #1539: 'FABP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FABP2 MUTATED 2 3 1 1
FABP2 WILD-TYPE 98 69 71 120
'FABP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S15571.  Gene #1539: 'FABP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FABP2 MUTATED 1 2 3 0 1
FABP2 WILD-TYPE 58 73 71 119 37
'FABP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S15572.  Gene #1539: 'FABP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FABP2 MUTATED 3 2 0 1 1
FABP2 WILD-TYPE 48 74 61 70 94
'FABP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S15573.  Gene #1539: 'FABP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FABP2 MUTATED 1 0 1 2 1 1 0 1 0
FABP2 WILD-TYPE 68 48 38 14 52 19 21 37 50
'FABP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S15574.  Gene #1539: 'FABP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FABP2 MUTATED 1 0 1 0 1 0
FABP2 WILD-TYPE 12 16 13 11 10 9
'FABP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S15575.  Gene #1539: 'FABP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FABP2 MUTATED 1 0 0 2 0 0 0 0 0
FABP2 WILD-TYPE 10 7 7 7 8 7 11 9 5
'CTNND1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0072

Table S15576.  Gene #1540: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CTNND1 MUTATED 2 1 15
CTNND1 WILD-TYPE 40 172 132

Figure S3977.  Get High-res Image Gene #1540: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTNND1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.64

Table S15577.  Gene #1540: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CTNND1 MUTATED 7 3 6
CTNND1 WILD-TYPE 55 70 69
'CTNND1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S15578.  Gene #1540: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CTNND1 MUTATED 2 5 8
CTNND1 WILD-TYPE 68 115 92
'CTNND1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S15579.  Gene #1540: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CTNND1 MUTATED 1 0 1 4 2 6 1 0 0
CTNND1 WILD-TYPE 40 26 29 25 37 63 19 14 22
'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00356 (Fisher's exact test), Q value = 0.053

Table S15580.  Gene #1540: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CTNND1 MUTATED 2 9 5 2
CTNND1 WILD-TYPE 98 63 67 119

Figure S3978.  Get High-res Image Gene #1540: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00082 (Fisher's exact test), Q value = 0.022

Table S15581.  Gene #1540: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CTNND1 MUTATED 1 4 11 2 0
CTNND1 WILD-TYPE 58 71 63 117 38

Figure S3979.  Get High-res Image Gene #1540: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.14

Table S15582.  Gene #1540: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CTNND1 MUTATED 1 10 3 2 2
CTNND1 WILD-TYPE 50 66 58 69 93

Figure S3980.  Get High-res Image Gene #1540: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 0.098

Table S15583.  Gene #1540: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CTNND1 MUTATED 6 4 0 4 2 1 0 0 1
CTNND1 WILD-TYPE 63 44 39 12 51 19 21 38 49

Figure S3981.  Get High-res Image Gene #1540: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00925 (Fisher's exact test), Q value = 0.09

Table S15584.  Gene #1540: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CTNND1 MUTATED 0 0 0 0 3 1
CTNND1 WILD-TYPE 13 16 14 11 8 8

Figure S3982.  Get High-res Image Gene #1540: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S15585.  Gene #1540: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CTNND1 MUTATED 0 0 0 1 0 1 1 1 0
CTNND1 WILD-TYPE 11 7 7 8 8 6 10 8 5
'NEDD9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.18

Table S15586.  Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NEDD9 MUTATED 4 0 0 1 0
NEDD9 WILD-TYPE 28 18 46 26 23

Figure S3983.  Get High-res Image Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'NEDD9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0666 (Fisher's exact test), Q value = 0.28

Table S15587.  Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NEDD9 MUTATED 4 1 0
NEDD9 WILD-TYPE 39 66 36
'NEDD9 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0048

Table S15588.  Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NEDD9 MUTATED 0 0 12
NEDD9 WILD-TYPE 42 173 135

Figure S3984.  Get High-res Image Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NEDD9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 0.24

Table S15589.  Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NEDD9 MUTATED 2 0 5
NEDD9 WILD-TYPE 60 73 70

Figure S3985.  Get High-res Image Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NEDD9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S15590.  Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NEDD9 MUTATED 0 4 5
NEDD9 WILD-TYPE 70 116 95
'NEDD9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S15591.  Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NEDD9 MUTATED 0 0 1 2 1 5 0 0 0
NEDD9 WILD-TYPE 41 26 29 27 38 64 20 14 22
'NEDD9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.096

Table S15592.  Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NEDD9 MUTATED 0 6 1 5
NEDD9 WILD-TYPE 100 66 71 116

Figure S3986.  Get High-res Image Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NEDD9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.11

Table S15593.  Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NEDD9 MUTATED 1 1 5 1 4
NEDD9 WILD-TYPE 58 74 69 118 34

Figure S3987.  Get High-res Image Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NEDD9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.2

Table S15594.  Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NEDD9 MUTATED 0 5 1 0 6
NEDD9 WILD-TYPE 51 71 60 71 89

Figure S3988.  Get High-res Image Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NEDD9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00986 (Fisher's exact test), Q value = 0.093

Table S15595.  Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NEDD9 MUTATED 2 1 0 3 0 2 2 1 1
NEDD9 WILD-TYPE 67 47 39 13 53 18 19 37 49

Figure S3989.  Get High-res Image Gene #1541: 'NEDD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HCFC1R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.56

Table S15596.  Gene #1542: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HCFC1R1 MUTATED 0 1 4
HCFC1R1 WILD-TYPE 42 172 143
'HCFC1R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15597.  Gene #1542: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HCFC1R1 MUTATED 1 1 2
HCFC1R1 WILD-TYPE 61 72 73
'HCFC1R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S15598.  Gene #1542: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HCFC1R1 MUTATED 0 2 3
HCFC1R1 WILD-TYPE 70 118 97
'HCFC1R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.93

Table S15599.  Gene #1542: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HCFC1R1 MUTATED 0 0 0 2 1 2 0 0 0
HCFC1R1 WILD-TYPE 41 26 30 27 38 67 20 14 22
'HCFC1R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S15600.  Gene #1542: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HCFC1R1 MUTATED 1 2 1 1
HCFC1R1 WILD-TYPE 99 70 71 120
'HCFC1R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.088 (Fisher's exact test), Q value = 0.32

Table S15601.  Gene #1542: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HCFC1R1 MUTATED 0 1 3 0 1
HCFC1R1 WILD-TYPE 59 74 71 119 37
'HCFC1R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S15602.  Gene #1542: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HCFC1R1 MUTATED 0 3 0 1 1
HCFC1R1 WILD-TYPE 51 73 61 70 94
'HCFC1R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S15603.  Gene #1542: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HCFC1R1 MUTATED 4 0 0 0 1 0 0 0 0
HCFC1R1 WILD-TYPE 65 48 39 16 52 20 21 38 50
'PRKCQ MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0993 (Fisher's exact test), Q value = 0.34

Table S15604.  Gene #1543: 'PRKCQ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PRKCQ MUTATED 3 0 0 1 0
PRKCQ WILD-TYPE 29 18 46 26 23
'PRKCQ MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0099 (Fisher's exact test), Q value = 0.094

Table S15605.  Gene #1543: 'PRKCQ MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PRKCQ MUTATED 4 0 0
PRKCQ WILD-TYPE 39 67 36

Figure S3990.  Get High-res Image Gene #1543: 'PRKCQ MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PRKCQ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S15606.  Gene #1543: 'PRKCQ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRKCQ MUTATED 2 4 9
PRKCQ WILD-TYPE 40 169 138
'PRKCQ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S15607.  Gene #1543: 'PRKCQ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRKCQ MUTATED 6 3 2
PRKCQ WILD-TYPE 56 70 73
'PRKCQ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0528 (Fisher's exact test), Q value = 0.25

Table S15608.  Gene #1543: 'PRKCQ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRKCQ MUTATED 0 5 7
PRKCQ WILD-TYPE 70 115 93
'PRKCQ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S15609.  Gene #1543: 'PRKCQ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRKCQ MUTATED 3 1 2 0 1 4 0 0 1
PRKCQ WILD-TYPE 38 25 28 29 38 65 20 14 21
'PRKCQ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S15610.  Gene #1543: 'PRKCQ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRKCQ MUTATED 5 2 4 4
PRKCQ WILD-TYPE 95 70 68 117
'PRKCQ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00622 (Fisher's exact test), Q value = 0.074

Table S15611.  Gene #1543: 'PRKCQ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRKCQ MUTATED 2 5 4 0 4
PRKCQ WILD-TYPE 57 70 70 119 34

Figure S3991.  Get High-res Image Gene #1543: 'PRKCQ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PRKCQ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S15612.  Gene #1543: 'PRKCQ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRKCQ MUTATED 2 5 4 0 2
PRKCQ WILD-TYPE 49 71 57 71 93
'PRKCQ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S15613.  Gene #1543: 'PRKCQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRKCQ MUTATED 2 5 1 0 2 1 1 1 0
PRKCQ WILD-TYPE 67 43 38 16 51 19 20 37 50
'PRKCQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S15614.  Gene #1543: 'PRKCQ MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PRKCQ MUTATED 0 1 1 0 0 1
PRKCQ WILD-TYPE 13 15 13 11 11 8
'PRKCQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S15615.  Gene #1543: 'PRKCQ MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PRKCQ MUTATED 1 0 0 0 0 2 0 0 0
PRKCQ WILD-TYPE 10 7 7 9 8 5 11 9 5
'CAMK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0812 (Fisher's exact test), Q value = 0.31

Table S15616.  Gene #1544: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CAMK1 MUTATED 0 1 6
CAMK1 WILD-TYPE 42 172 141
'CAMK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S15617.  Gene #1544: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CAMK1 MUTATED 2 1 2
CAMK1 WILD-TYPE 60 72 73
'CAMK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S15618.  Gene #1544: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CAMK1 MUTATED 1 2 4
CAMK1 WILD-TYPE 69 118 96
'CAMK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S15619.  Gene #1544: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CAMK1 MUTATED 0 1 0 1 0 3 1 1 0
CAMK1 WILD-TYPE 41 25 30 28 39 66 19 13 22
'CAMK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S15620.  Gene #1544: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CAMK1 MUTATED 1 3 1 2
CAMK1 WILD-TYPE 99 69 71 119
'CAMK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0328 (Fisher's exact test), Q value = 0.19

Table S15621.  Gene #1544: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CAMK1 MUTATED 0 2 3 0 2
CAMK1 WILD-TYPE 59 73 71 119 36

Figure S3992.  Get High-res Image Gene #1544: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CAMK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S15622.  Gene #1544: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CAMK1 MUTATED 0 5 0 0 1
CAMK1 WILD-TYPE 51 71 61 71 94

Figure S3993.  Get High-res Image Gene #1544: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CAMK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S15623.  Gene #1544: 'CAMK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CAMK1 MUTATED 1 1 1 1 0 1 0 1 0
CAMK1 WILD-TYPE 68 47 38 15 53 19 21 37 50
'VCX3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.85

Table S15624.  Gene #1545: 'VCX3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
VCX3A MUTATED 0 4 1
VCX3A WILD-TYPE 42 169 146
'VCX3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.65

Table S15625.  Gene #1545: 'VCX3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
VCX3A MUTATED 0 3 2
VCX3A WILD-TYPE 62 70 73
'VCX3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.37

Table S15626.  Gene #1545: 'VCX3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
VCX3A MUTATED 2 0 1
VCX3A WILD-TYPE 68 120 99
'VCX3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0958 (Fisher's exact test), Q value = 0.34

Table S15627.  Gene #1545: 'VCX3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
VCX3A MUTATED 2 0 0 0 0 0 0 1 0
VCX3A WILD-TYPE 39 26 30 29 39 69 20 13 22
'VCX3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15628.  Gene #1545: 'VCX3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
VCX3A MUTATED 1 1 1 2
VCX3A WILD-TYPE 99 71 71 119
'VCX3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 0.97

Table S15629.  Gene #1545: 'VCX3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
VCX3A MUTATED 1 2 0 2 0
VCX3A WILD-TYPE 58 73 74 117 38
'VCX3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S15630.  Gene #1545: 'VCX3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
VCX3A MUTATED 2 1 1 0 1
VCX3A WILD-TYPE 49 75 60 71 94
'VCX3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S15631.  Gene #1545: 'VCX3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
VCX3A MUTATED 1 1 0 0 1 0 1 0 1
VCX3A WILD-TYPE 68 47 39 16 52 20 20 38 49
'ATAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.21

Table S15632.  Gene #1546: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATAD1 MUTATED 0 1 7
ATAD1 WILD-TYPE 42 172 140

Figure S3994.  Get High-res Image Gene #1546: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.62

Table S15633.  Gene #1546: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATAD1 MUTATED 4 1 2
ATAD1 WILD-TYPE 58 72 73
'ATAD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S15634.  Gene #1546: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATAD1 MUTATED 0 2 5
ATAD1 WILD-TYPE 70 118 95
'ATAD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.75

Table S15635.  Gene #1546: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATAD1 MUTATED 0 1 0 0 1 5 0 0 0
ATAD1 WILD-TYPE 41 25 30 29 38 64 20 14 22
'ATAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S15636.  Gene #1546: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATAD1 MUTATED 1 3 3 1
ATAD1 WILD-TYPE 99 69 69 120
'ATAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0748 (Fisher's exact test), Q value = 0.3

Table S15637.  Gene #1546: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATAD1 MUTATED 1 2 4 0 1
ATAD1 WILD-TYPE 58 73 70 119 37
'ATAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.99

Table S15638.  Gene #1546: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATAD1 MUTATED 0 3 2 1 2
ATAD1 WILD-TYPE 51 73 59 70 93
'ATAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S15639.  Gene #1546: 'ATAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATAD1 MUTATED 1 3 0 1 1 0 0 1 1
ATAD1 WILD-TYPE 68 45 39 15 52 20 21 37 49
'C6ORF150 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S15640.  Gene #1547: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C6ORF150 MUTATED 1 0 0 2 0
C6ORF150 WILD-TYPE 31 18 46 25 23
'C6ORF150 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S15641.  Gene #1547: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C6ORF150 MUTATED 2 1 0
C6ORF150 WILD-TYPE 41 66 36
'C6ORF150 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.61

Table S15642.  Gene #1547: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C6ORF150 MUTATED 0 3 6
C6ORF150 WILD-TYPE 42 170 141
'C6ORF150 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S15643.  Gene #1547: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C6ORF150 MUTATED 4 1 1
C6ORF150 WILD-TYPE 58 72 74
'C6ORF150 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.99

Table S15644.  Gene #1547: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C6ORF150 MUTATED 1 4 4
C6ORF150 WILD-TYPE 69 116 96
'C6ORF150 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 0.91

Table S15645.  Gene #1547: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C6ORF150 MUTATED 0 1 1 0 1 3 1 0 2
C6ORF150 WILD-TYPE 41 25 29 29 38 66 19 14 20
'C6ORF150 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.096

Table S15646.  Gene #1547: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C6ORF150 MUTATED 0 0 5 4
C6ORF150 WILD-TYPE 100 72 67 117

Figure S3995.  Get High-res Image Gene #1547: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C6ORF150 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15647.  Gene #1547: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C6ORF150 MUTATED 1 2 2 3 1
C6ORF150 WILD-TYPE 58 73 72 116 37
'C6ORF150 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.53

Table S15648.  Gene #1547: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C6ORF150 MUTATED 2 3 0 0 3
C6ORF150 WILD-TYPE 49 73 61 71 92
'C6ORF150 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S15649.  Gene #1547: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C6ORF150 MUTATED 0 3 0 0 2 1 0 1 1
C6ORF150 WILD-TYPE 69 45 39 16 51 19 21 37 49
'IGFN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.23

Table S15650.  Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IGFN1 MUTATED 3 1 0 0 0
IGFN1 WILD-TYPE 29 17 46 27 23

Figure S3996.  Get High-res Image Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'IGFN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0523 (Fisher's exact test), Q value = 0.25

Table S15651.  Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IGFN1 MUTATED 3 0 1
IGFN1 WILD-TYPE 40 67 35
'IGFN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00534 (Fisher's exact test), Q value = 0.069

Table S15652.  Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IGFN1 MUTATED 1 2 12
IGFN1 WILD-TYPE 41 171 135

Figure S3997.  Get High-res Image Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IGFN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.24

Table S15653.  Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IGFN1 MUTATED 3 1 8
IGFN1 WILD-TYPE 59 72 67

Figure S3998.  Get High-res Image Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'IGFN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.85

Table S15654.  Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IGFN1 MUTATED 2 6 7
IGFN1 WILD-TYPE 68 114 93
'IGFN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S15655.  Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IGFN1 MUTATED 1 1 2 1 2 5 2 1 0
IGFN1 WILD-TYPE 40 25 28 28 37 64 18 13 22
'IGFN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00506 (Fisher's exact test), Q value = 0.067

Table S15656.  Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IGFN1 MUTATED 1 9 2 4
IGFN1 WILD-TYPE 99 63 70 117

Figure S3999.  Get High-res Image Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IGFN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00201 (Fisher's exact test), Q value = 0.038

Table S15657.  Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IGFN1 MUTATED 1 2 9 1 3
IGFN1 WILD-TYPE 58 73 65 118 35

Figure S4000.  Get High-res Image Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IGFN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.16

Table S15658.  Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IGFN1 MUTATED 1 9 1 2 2
IGFN1 WILD-TYPE 50 67 60 69 93

Figure S4001.  Get High-res Image Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IGFN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.095

Table S15659.  Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IGFN1 MUTATED 1 2 1 4 2 2 1 2 0
IGFN1 WILD-TYPE 68 46 38 12 51 18 20 36 50

Figure S4002.  Get High-res Image Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'IGFN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S15660.  Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IGFN1 MUTATED 1 0 0 0 2 0
IGFN1 WILD-TYPE 12 16 14 11 9 9
'IGFN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S15661.  Gene #1548: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IGFN1 MUTATED 0 0 0 1 0 0 1 1 0
IGFN1 WILD-TYPE 11 7 7 8 8 7 10 8 5
'CCDC14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S15662.  Gene #1549: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CCDC14 MUTATED 2 0 0 1 0
CCDC14 WILD-TYPE 30 18 46 26 23
'CCDC14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 0.21

Table S15663.  Gene #1549: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CCDC14 MUTATED 3 0 0
CCDC14 WILD-TYPE 40 67 36

Figure S4003.  Get High-res Image Gene #1549: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CCDC14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00329 (Fisher's exact test), Q value = 0.05

Table S15664.  Gene #1549: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCDC14 MUTATED 0 1 10
CCDC14 WILD-TYPE 42 172 137

Figure S4004.  Get High-res Image Gene #1549: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.2

Table S15665.  Gene #1549: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCDC14 MUTATED 5 0 3
CCDC14 WILD-TYPE 57 73 72

Figure S4005.  Get High-res Image Gene #1549: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CCDC14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S15666.  Gene #1549: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCDC14 MUTATED 3 1 5
CCDC14 WILD-TYPE 67 119 95
'CCDC14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S15667.  Gene #1549: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCDC14 MUTATED 2 1 0 0 2 3 1 0 0
CCDC14 WILD-TYPE 39 25 30 29 37 66 19 14 22
'CCDC14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.75

Table S15668.  Gene #1549: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCDC14 MUTATED 1 2 4 4
CCDC14 WILD-TYPE 99 70 68 117
'CCDC14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0807 (Fisher's exact test), Q value = 0.31

Table S15669.  Gene #1549: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCDC14 MUTATED 2 1 4 1 3
CCDC14 WILD-TYPE 57 74 70 118 35
'CCDC14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S15670.  Gene #1549: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCDC14 MUTATED 1 3 2 0 4
CCDC14 WILD-TYPE 50 73 59 71 91
'CCDC14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 0.97

Table S15671.  Gene #1549: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCDC14 MUTATED 1 3 0 1 2 0 0 1 2
CCDC14 WILD-TYPE 68 45 39 15 51 20 21 37 48
'CCDC14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S15672.  Gene #1549: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CCDC14 MUTATED 0 0 1 0 2 0
CCDC14 WILD-TYPE 13 16 13 11 9 9
'CCDC14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S15673.  Gene #1549: 'CCDC14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CCDC14 MUTATED 0 0 0 0 2 0 1 0 0
CCDC14 WILD-TYPE 11 7 7 9 6 7 10 9 5
'ENPP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.2

Table S15674.  Gene #1550: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ENPP3 MUTATED 1 1 7
ENPP3 WILD-TYPE 41 172 140

Figure S4006.  Get High-res Image Gene #1550: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ENPP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0831 (Fisher's exact test), Q value = 0.31

Table S15675.  Gene #1550: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ENPP3 MUTATED 4 0 3
ENPP3 WILD-TYPE 58 73 72
'ENPP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S15676.  Gene #1550: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ENPP3 MUTATED 1 3 4
ENPP3 WILD-TYPE 69 117 96
'ENPP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S15677.  Gene #1550: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ENPP3 MUTATED 1 0 0 1 2 3 0 0 1
ENPP3 WILD-TYPE 40 26 30 28 37 66 20 14 21
'ENPP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.72

Table S15678.  Gene #1550: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ENPP3 MUTATED 1 3 3 2
ENPP3 WILD-TYPE 99 69 69 119
'ENPP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00384 (Fisher's exact test), Q value = 0.055

Table S15679.  Gene #1550: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ENPP3 MUTATED 2 0 5 0 2
ENPP3 WILD-TYPE 57 75 69 119 36

Figure S4007.  Get High-res Image Gene #1550: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ENPP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.26

Table S15680.  Gene #1550: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ENPP3 MUTATED 0 4 3 0 1
ENPP3 WILD-TYPE 51 72 58 71 94
'ENPP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S15681.  Gene #1550: 'ENPP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ENPP3 MUTATED 1 3 0 2 1 0 0 1 0
ENPP3 WILD-TYPE 68 45 39 14 52 20 21 37 50
'TAB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S15682.  Gene #1551: 'TAB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TAB1 MUTATED 0 0 3
TAB1 WILD-TYPE 42 173 144
'TAB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.92

Table S15683.  Gene #1551: 'TAB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TAB1 MUTATED 0 1 2
TAB1 WILD-TYPE 70 119 98
'TAB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S15684.  Gene #1551: 'TAB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TAB1 MUTATED 0 1 0 0 0 2 0 0 0
TAB1 WILD-TYPE 41 25 30 29 39 67 20 14 22
'TAB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S15685.  Gene #1551: 'TAB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TAB1 MUTATED 0 2 0 1
TAB1 WILD-TYPE 100 70 72 120
'TAB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 0.77

Table S15686.  Gene #1551: 'TAB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TAB1 MUTATED 0 0 2 1 0
TAB1 WILD-TYPE 59 75 72 118 38
'TAB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S15687.  Gene #1551: 'TAB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TAB1 MUTATED 0 2 0 0 1
TAB1 WILD-TYPE 51 74 61 71 94
'TAB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00102 (Fisher's exact test), Q value = 0.025

Table S15688.  Gene #1551: 'TAB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TAB1 MUTATED 0 0 0 2 0 0 1 0 0
TAB1 WILD-TYPE 69 48 39 14 53 20 20 38 50

Figure S4008.  Get High-res Image Gene #1551: 'TAB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDK5RAP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S15689.  Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CDK5RAP2 MUTATED 1 0 0 2 0
CDK5RAP2 WILD-TYPE 31 18 46 25 23
'CDK5RAP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S15690.  Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CDK5RAP2 MUTATED 2 1 0
CDK5RAP2 WILD-TYPE 41 66 36
'CDK5RAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S15691.  Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CDK5RAP2 MUTATED 1 2 20
CDK5RAP2 WILD-TYPE 41 171 127

Figure S4009.  Get High-res Image Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDK5RAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00768 (Fisher's exact test), Q value = 0.082

Table S15692.  Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CDK5RAP2 MUTATED 9 1 9
CDK5RAP2 WILD-TYPE 53 72 66

Figure S4010.  Get High-res Image Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CDK5RAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S15693.  Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CDK5RAP2 MUTATED 3 8 11
CDK5RAP2 WILD-TYPE 67 112 89
'CDK5RAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S15694.  Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CDK5RAP2 MUTATED 4 2 2 3 0 9 1 1 0
CDK5RAP2 WILD-TYPE 37 24 28 26 39 60 19 13 22
'CDK5RAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 0.29

Table S15695.  Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CDK5RAP2 MUTATED 3 8 7 5
CDK5RAP2 WILD-TYPE 97 64 65 116
'CDK5RAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00575 (Fisher's exact test), Q value = 0.072

Table S15696.  Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CDK5RAP2 MUTATED 4 3 11 2 3
CDK5RAP2 WILD-TYPE 55 72 63 117 35

Figure S4011.  Get High-res Image Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDK5RAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S15697.  Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CDK5RAP2 MUTATED 5 9 3 0 5
CDK5RAP2 WILD-TYPE 46 67 58 71 90

Figure S4012.  Get High-res Image Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CDK5RAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0228 (Fisher's exact test), Q value = 0.16

Table S15698.  Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CDK5RAP2 MUTATED 3 8 0 2 2 3 0 2 2
CDK5RAP2 WILD-TYPE 66 40 39 14 51 17 21 36 48

Figure S4013.  Get High-res Image Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDK5RAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S15699.  Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CDK5RAP2 MUTATED 0 1 2 0 2 0
CDK5RAP2 WILD-TYPE 13 15 12 11 9 9
'CDK5RAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S15700.  Gene #1552: 'CDK5RAP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CDK5RAP2 MUTATED 0 0 0 2 0 1 2 0 0
CDK5RAP2 WILD-TYPE 11 7 7 7 8 6 9 9 5
'CASP5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.099 (Fisher's exact test), Q value = 0.34

Table S15701.  Gene #1553: 'CASP5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CASP5 MUTATED 3 0 0 1 0
CASP5 WILD-TYPE 29 18 46 26 23
'CASP5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0513 (Fisher's exact test), Q value = 0.24

Table S15702.  Gene #1553: 'CASP5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CASP5 MUTATED 3 0 1
CASP5 WILD-TYPE 40 67 35
'CASP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.63

Table S15703.  Gene #1553: 'CASP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CASP5 MUTATED 1 4 8
CASP5 WILD-TYPE 41 169 139
'CASP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15704.  Gene #1553: 'CASP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CASP5 MUTATED 3 3 3
CASP5 WILD-TYPE 59 70 72
'CASP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S15705.  Gene #1553: 'CASP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CASP5 MUTATED 0 5 4
CASP5 WILD-TYPE 70 115 96
'CASP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S15706.  Gene #1553: 'CASP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CASP5 MUTATED 0 1 1 1 0 4 0 2 0
CASP5 WILD-TYPE 41 25 29 28 39 65 20 12 22
'CASP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15707.  Gene #1553: 'CASP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CASP5 MUTATED 4 2 2 5
CASP5 WILD-TYPE 96 70 70 116
'CASP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S15708.  Gene #1553: 'CASP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CASP5 MUTATED 3 1 4 2 3
CASP5 WILD-TYPE 56 74 70 117 35
'CASP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S15709.  Gene #1553: 'CASP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CASP5 MUTATED 0 3 4 3 2
CASP5 WILD-TYPE 51 73 57 68 93
'CASP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S15710.  Gene #1553: 'CASP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CASP5 MUTATED 2 4 0 2 1 0 1 1 1
CASP5 WILD-TYPE 67 44 39 14 52 20 20 37 49
'CASP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S15711.  Gene #1553: 'CASP5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CASP5 MUTATED 0 1 0 1 1 0
CASP5 WILD-TYPE 13 15 14 10 10 9
'CASP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S15712.  Gene #1553: 'CASP5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CASP5 MUTATED 1 0 0 1 0 0 0 1 0
CASP5 WILD-TYPE 10 7 7 8 8 7 11 8 5
'NONO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S15713.  Gene #1554: 'NONO MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NONO MUTATED 2 3 6
NONO WILD-TYPE 40 170 141
'NONO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.73

Table S15714.  Gene #1554: 'NONO MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NONO MUTATED 5 2 3
NONO WILD-TYPE 57 71 72
'NONO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S15715.  Gene #1554: 'NONO MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NONO MUTATED 1 2 6
NONO WILD-TYPE 69 118 94
'NONO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.79

Table S15716.  Gene #1554: 'NONO MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NONO MUTATED 1 1 1 0 0 5 0 1 0
NONO WILD-TYPE 40 25 29 29 39 64 20 13 22
'NONO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S15717.  Gene #1554: 'NONO MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NONO MUTATED 3 5 2 1
NONO WILD-TYPE 97 67 70 120
'NONO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.12

Table S15718.  Gene #1554: 'NONO MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NONO MUTATED 0 5 5 1 0
NONO WILD-TYPE 59 70 69 118 38

Figure S4014.  Get High-res Image Gene #1554: 'NONO MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NONO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S15719.  Gene #1554: 'NONO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NONO MUTATED 1 4 2 2 2
NONO WILD-TYPE 50 72 59 69 93
'NONO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S15720.  Gene #1554: 'NONO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NONO MUTATED 5 1 0 1 1 2 0 0 1
NONO WILD-TYPE 64 47 39 15 52 18 21 38 49
'NONO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.82

Table S15721.  Gene #1554: 'NONO MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
NONO MUTATED 1 0 2 0 1 0
NONO WILD-TYPE 12 16 12 11 10 9
'NONO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S15722.  Gene #1554: 'NONO MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
NONO MUTATED 1 0 0 2 1 0 0 0 0
NONO WILD-TYPE 10 7 7 7 7 7 11 9 5
'SLC16A5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.55

Table S15723.  Gene #1555: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC16A5 MUTATED 3 0 1 0 0
SLC16A5 WILD-TYPE 29 18 45 27 23
'SLC16A5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0516 (Fisher's exact test), Q value = 0.24

Table S15724.  Gene #1555: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC16A5 MUTATED 3 0 1
SLC16A5 WILD-TYPE 40 67 35
'SLC16A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.94

Table S15725.  Gene #1555: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC16A5 MUTATED 1 3 5
SLC16A5 WILD-TYPE 41 170 142
'SLC16A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S15726.  Gene #1555: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC16A5 MUTATED 2 2 1
SLC16A5 WILD-TYPE 60 71 74
'SLC16A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.18

Table S15727.  Gene #1555: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC16A5 MUTATED 1 1 7
SLC16A5 WILD-TYPE 69 119 93

Figure S4015.  Get High-res Image Gene #1555: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SLC16A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S15728.  Gene #1555: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC16A5 MUTATED 2 0 1 0 1 4 1 0 0
SLC16A5 WILD-TYPE 39 26 29 29 38 65 19 14 22
'SLC16A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S15729.  Gene #1555: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC16A5 MUTATED 3 1 2 4
SLC16A5 WILD-TYPE 97 71 70 117
'SLC16A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.63

Table S15730.  Gene #1555: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC16A5 MUTATED 2 2 1 2 3
SLC16A5 WILD-TYPE 57 73 73 117 35
'SLC16A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S15731.  Gene #1555: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC16A5 MUTATED 1 0 3 1 5
SLC16A5 WILD-TYPE 50 76 58 70 90
'SLC16A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.75

Table S15732.  Gene #1555: 'SLC16A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC16A5 MUTATED 1 2 1 0 1 1 1 3 0
SLC16A5 WILD-TYPE 68 46 38 16 52 19 20 35 50
'GUCY2F MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.18

Table S15733.  Gene #1556: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GUCY2F MUTATED 4 0 0 1 0
GUCY2F WILD-TYPE 28 18 46 26 23

Figure S4016.  Get High-res Image Gene #1556: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GUCY2F MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0228 (Fisher's exact test), Q value = 0.16

Table S15734.  Gene #1556: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GUCY2F MUTATED 4 0 1
GUCY2F WILD-TYPE 39 67 35

Figure S4017.  Get High-res Image Gene #1556: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GUCY2F MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0664 (Fisher's exact test), Q value = 0.28

Table S15735.  Gene #1556: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GUCY2F MUTATED 0 7 12
GUCY2F WILD-TYPE 42 166 135
'GUCY2F MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S15736.  Gene #1556: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GUCY2F MUTATED 2 4 7
GUCY2F WILD-TYPE 60 69 68
'GUCY2F MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S15737.  Gene #1556: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GUCY2F MUTATED 2 6 5
GUCY2F WILD-TYPE 68 114 95
'GUCY2F MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S15738.  Gene #1556: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GUCY2F MUTATED 1 1 2 1 1 5 0 1 1
GUCY2F WILD-TYPE 40 25 28 28 38 64 20 13 21
'GUCY2F MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S15739.  Gene #1556: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GUCY2F MUTATED 6 5 3 5
GUCY2F WILD-TYPE 94 67 69 116
'GUCY2F MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S15740.  Gene #1556: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GUCY2F MUTATED 2 5 7 1 4
GUCY2F WILD-TYPE 57 70 67 118 34

Figure S4018.  Get High-res Image Gene #1556: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GUCY2F MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S15741.  Gene #1556: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GUCY2F MUTATED 4 6 1 3 5
GUCY2F WILD-TYPE 47 70 60 68 90
'GUCY2F MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S15742.  Gene #1556: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GUCY2F MUTATED 5 1 1 2 3 2 2 3 0
GUCY2F WILD-TYPE 64 47 38 14 50 18 19 35 50
'GUCY2F MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0585 (Fisher's exact test), Q value = 0.26

Table S15743.  Gene #1556: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GUCY2F MUTATED 3 0 1 0 0 2
GUCY2F WILD-TYPE 10 16 13 11 11 7
'GUCY2F MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0923 (Fisher's exact test), Q value = 0.33

Table S15744.  Gene #1556: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GUCY2F MUTATED 1 0 0 0 1 0 0 2 2
GUCY2F WILD-TYPE 10 7 7 9 7 7 11 7 3
'CXCR7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S15745.  Gene #1557: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CXCR7 MUTATED 1 1 0 1 1
CXCR7 WILD-TYPE 31 17 46 26 22
'CXCR7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S15746.  Gene #1557: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CXCR7 MUTATED 0 2 2
CXCR7 WILD-TYPE 43 65 34
'CXCR7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S15747.  Gene #1557: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CXCR7 MUTATED 2 7 10
CXCR7 WILD-TYPE 40 166 137
'CXCR7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15748.  Gene #1557: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CXCR7 MUTATED 4 4 5
CXCR7 WILD-TYPE 58 69 70
'CXCR7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.62

Table S15749.  Gene #1557: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CXCR7 MUTATED 4 3 7
CXCR7 WILD-TYPE 66 117 93
'CXCR7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S15750.  Gene #1557: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CXCR7 MUTATED 1 0 2 1 2 6 2 0 0
CXCR7 WILD-TYPE 40 26 28 28 37 63 18 14 22
'CXCR7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S15751.  Gene #1557: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CXCR7 MUTATED 4 6 4 4
CXCR7 WILD-TYPE 96 66 68 117
'CXCR7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S15752.  Gene #1557: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CXCR7 MUTATED 3 3 7 4 1
CXCR7 WILD-TYPE 56 72 67 115 37
'CXCR7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0896 (Fisher's exact test), Q value = 0.32

Table S15753.  Gene #1557: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CXCR7 MUTATED 3 9 1 3 3
CXCR7 WILD-TYPE 48 67 60 68 92
'CXCR7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.56

Table S15754.  Gene #1557: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CXCR7 MUTATED 5 3 1 3 3 1 1 2 0
CXCR7 WILD-TYPE 64 45 38 13 50 19 20 36 50
'CXCR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.65

Table S15755.  Gene #1557: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CXCR7 MUTATED 0 1 0 1 2 0
CXCR7 WILD-TYPE 13 15 14 10 9 9
'CXCR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S15756.  Gene #1557: 'CXCR7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CXCR7 MUTATED 1 0 1 1 0 1 0 0 0
CXCR7 WILD-TYPE 10 7 6 8 8 6 11 9 5
'RELA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S15757.  Gene #1558: 'RELA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RELA MUTATED 2 2 5
RELA WILD-TYPE 40 171 142
'RELA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S15758.  Gene #1558: 'RELA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RELA MUTATED 0 2 5
RELA WILD-TYPE 62 71 70
'RELA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S15759.  Gene #1558: 'RELA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RELA MUTATED 1 4 3
RELA WILD-TYPE 69 116 97
'RELA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S15760.  Gene #1558: 'RELA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RELA MUTATED 0 0 2 1 0 4 0 1 0
RELA WILD-TYPE 41 26 28 28 39 65 20 13 22
'RELA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0622 (Fisher's exact test), Q value = 0.27

Table S15761.  Gene #1558: 'RELA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RELA MUTATED 2 5 0 2
RELA WILD-TYPE 98 67 72 119
'RELA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0687 (Fisher's exact test), Q value = 0.28

Table S15762.  Gene #1558: 'RELA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RELA MUTATED 1 3 3 0 2
RELA WILD-TYPE 58 72 71 119 36
'RELA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.23

Table S15763.  Gene #1558: 'RELA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RELA MUTATED 0 5 0 3 1
RELA WILD-TYPE 51 71 61 68 94

Figure S4019.  Get High-res Image Gene #1558: 'RELA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RELA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00302 (Fisher's exact test), Q value = 0.048

Table S15764.  Gene #1558: 'RELA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RELA MUTATED 4 0 0 3 0 0 0 2 0
RELA WILD-TYPE 65 48 39 13 53 20 21 36 50

Figure S4020.  Get High-res Image Gene #1558: 'RELA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'WDR65 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.1

Table S15765.  Gene #1559: 'WDR65 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WDR65 MUTATED 0 0 6
WDR65 WILD-TYPE 42 173 141

Figure S4021.  Get High-res Image Gene #1559: 'WDR65 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WDR65 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S15766.  Gene #1559: 'WDR65 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WDR65 MUTATED 2 0 2
WDR65 WILD-TYPE 60 73 73
'WDR65 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S15767.  Gene #1559: 'WDR65 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WDR65 MUTATED 1 1 4
WDR65 WILD-TYPE 69 119 96
'WDR65 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 0.95

Table S15768.  Gene #1559: 'WDR65 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WDR65 MUTATED 1 1 0 0 0 4 0 0 0
WDR65 WILD-TYPE 40 25 30 29 39 65 20 14 22
'WDR65 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S15769.  Gene #1559: 'WDR65 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WDR65 MUTATED 0 2 2 2
WDR65 WILD-TYPE 100 70 70 119
'WDR65 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0331 (Fisher's exact test), Q value = 0.19

Table S15770.  Gene #1559: 'WDR65 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WDR65 MUTATED 0 1 3 0 2
WDR65 WILD-TYPE 59 74 71 119 36

Figure S4022.  Get High-res Image Gene #1559: 'WDR65 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'WDR65 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0872 (Fisher's exact test), Q value = 0.32

Table S15771.  Gene #1559: 'WDR65 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WDR65 MUTATED 0 4 0 0 2
WDR65 WILD-TYPE 51 72 61 71 93
'WDR65 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S15772.  Gene #1559: 'WDR65 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WDR65 MUTATED 1 1 0 1 1 0 0 2 0
WDR65 WILD-TYPE 68 47 39 15 52 20 21 36 50
'WDR65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S15773.  Gene #1559: 'WDR65 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
WDR65 MUTATED 0 0 1 0 2 0
WDR65 WILD-TYPE 13 16 13 11 9 9
'WDR65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S15774.  Gene #1559: 'WDR65 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
WDR65 MUTATED 0 0 0 1 0 0 2 0 0
WDR65 WILD-TYPE 11 7 7 8 8 7 9 9 5
'DTX3L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S15775.  Gene #1560: 'DTX3L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DTX3L MUTATED 2 0 0 1 0
DTX3L WILD-TYPE 30 18 46 26 23
'DTX3L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15776.  Gene #1560: 'DTX3L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DTX3L MUTATED 1 1 1
DTX3L WILD-TYPE 42 66 35
'DTX3L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S15777.  Gene #1560: 'DTX3L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DTX3L MUTATED 0 3 7
DTX3L WILD-TYPE 42 170 140
'DTX3L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15778.  Gene #1560: 'DTX3L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DTX3L MUTATED 2 2 3
DTX3L WILD-TYPE 60 71 72
'DTX3L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S15779.  Gene #1560: 'DTX3L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DTX3L MUTATED 0 3 3
DTX3L WILD-TYPE 70 117 97
'DTX3L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.95

Table S15780.  Gene #1560: 'DTX3L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DTX3L MUTATED 0 0 1 1 0 3 1 0 0
DTX3L WILD-TYPE 41 26 29 28 39 66 19 14 22
'DTX3L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S15781.  Gene #1560: 'DTX3L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DTX3L MUTATED 3 3 1 3
DTX3L WILD-TYPE 97 69 71 118
'DTX3L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S15782.  Gene #1560: 'DTX3L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DTX3L MUTATED 0 3 4 2 1
DTX3L WILD-TYPE 59 72 70 117 37
'DTX3L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S15783.  Gene #1560: 'DTX3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DTX3L MUTATED 2 3 1 2 2
DTX3L WILD-TYPE 49 73 60 69 93
'DTX3L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S15784.  Gene #1560: 'DTX3L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DTX3L MUTATED 2 0 1 1 3 2 0 1 0
DTX3L WILD-TYPE 67 48 38 15 50 18 21 37 50
'ARID4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.63

Table S15785.  Gene #1561: 'ARID4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ARID4B MUTATED 1 3 7
ARID4B WILD-TYPE 41 170 140
'ARID4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 0.25

Table S15786.  Gene #1561: 'ARID4B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ARID4B MUTATED 4 0 5
ARID4B WILD-TYPE 58 73 70
'ARID4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.76

Table S15787.  Gene #1561: 'ARID4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ARID4B MUTATED 2 2 5
ARID4B WILD-TYPE 68 118 95
'ARID4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S15788.  Gene #1561: 'ARID4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ARID4B MUTATED 0 0 0 1 1 4 2 1 0
ARID4B WILD-TYPE 41 26 30 28 38 65 18 13 22
'ARID4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.54

Table S15789.  Gene #1561: 'ARID4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ARID4B MUTATED 2 2 5 2
ARID4B WILD-TYPE 98 70 67 119
'ARID4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0581 (Fisher's exact test), Q value = 0.26

Table S15790.  Gene #1561: 'ARID4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ARID4B MUTATED 2 1 6 1 1
ARID4B WILD-TYPE 57 74 68 118 37
'ARID4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 0.16

Table S15791.  Gene #1561: 'ARID4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ARID4B MUTATED 1 6 2 1 0
ARID4B WILD-TYPE 50 70 59 70 95

Figure S4023.  Get High-res Image Gene #1561: 'ARID4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ARID4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S15792.  Gene #1561: 'ARID4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ARID4B MUTATED 2 4 1 1 2 0 0 0 0
ARID4B WILD-TYPE 67 44 38 15 51 20 21 38 50
'ARID4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S15793.  Gene #1561: 'ARID4B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ARID4B MUTATED 0 1 0 1 1 0
ARID4B WILD-TYPE 13 15 14 10 10 9
'ARID4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S15794.  Gene #1561: 'ARID4B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ARID4B MUTATED 1 0 0 1 0 0 1 0 0
ARID4B WILD-TYPE 10 7 7 8 8 7 10 9 5
'ZNF295 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S15795.  Gene #1562: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF295 MUTATED 3 0 0 1 1
ZNF295 WILD-TYPE 29 18 46 26 22
'ZNF295 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S15796.  Gene #1562: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF295 MUTATED 2 1 2
ZNF295 WILD-TYPE 41 66 34
'ZNF295 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S15797.  Gene #1562: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF295 MUTATED 0 3 7
ZNF295 WILD-TYPE 42 170 140
'ZNF295 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15798.  Gene #1562: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF295 MUTATED 1 2 2
ZNF295 WILD-TYPE 61 71 73
'ZNF295 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.49

Table S15799.  Gene #1562: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF295 MUTATED 0 5 2
ZNF295 WILD-TYPE 70 115 98
'ZNF295 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S15800.  Gene #1562: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF295 MUTATED 0 0 1 3 0 1 1 0 1
ZNF295 WILD-TYPE 41 26 29 26 39 68 19 14 21
'ZNF295 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.77

Table S15801.  Gene #1562: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF295 MUTATED 1 3 1 5
ZNF295 WILD-TYPE 99 69 71 116
'ZNF295 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.99

Table S15802.  Gene #1562: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF295 MUTATED 1 1 3 3 2
ZNF295 WILD-TYPE 58 74 71 116 36
'ZNF295 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S15803.  Gene #1562: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF295 MUTATED 3 2 0 2 3
ZNF295 WILD-TYPE 48 74 61 69 92
'ZNF295 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S15804.  Gene #1562: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF295 MUTATED 1 0 1 0 4 1 0 2 1
ZNF295 WILD-TYPE 68 48 38 16 49 19 21 36 49
'FBLIM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.27

Table S15805.  Gene #1563: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FBLIM1 MUTATED 1 0 4
FBLIM1 WILD-TYPE 41 173 143
'FBLIM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.2

Table S15806.  Gene #1563: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FBLIM1 MUTATED 0 0 4
FBLIM1 WILD-TYPE 62 73 71

Figure S4024.  Get High-res Image Gene #1563: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FBLIM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15807.  Gene #1563: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FBLIM1 MUTATED 1 2 2
FBLIM1 WILD-TYPE 69 118 98
'FBLIM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S15808.  Gene #1563: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FBLIM1 MUTATED 0 0 0 2 2 1 0 0 0
FBLIM1 WILD-TYPE 41 26 30 27 37 68 20 14 22
'FBLIM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.11

Table S15809.  Gene #1563: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FBLIM1 MUTATED 0 4 0 1
FBLIM1 WILD-TYPE 100 68 72 120

Figure S4025.  Get High-res Image Gene #1563: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FBLIM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.23

Table S15810.  Gene #1563: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FBLIM1 MUTATED 0 0 4 1 0
FBLIM1 WILD-TYPE 59 75 70 118 38

Figure S4026.  Get High-res Image Gene #1563: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBLIM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 0.23

Table S15811.  Gene #1563: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FBLIM1 MUTATED 0 4 0 0 1
FBLIM1 WILD-TYPE 51 72 61 71 94

Figure S4027.  Get High-res Image Gene #1563: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FBLIM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S15812.  Gene #1563: 'FBLIM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FBLIM1 MUTATED 1 1 0 2 1 0 0 0 0
FBLIM1 WILD-TYPE 68 47 39 14 52 20 21 38 50
'WFDC10B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15813.  Gene #1564: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WFDC10B MUTATED 0 3 2
WFDC10B WILD-TYPE 42 170 145
'WFDC10B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S15814.  Gene #1564: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WFDC10B MUTATED 0 3 2
WFDC10B WILD-TYPE 62 70 73
'WFDC10B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S15815.  Gene #1564: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WFDC10B MUTATED 1 3 1
WFDC10B WILD-TYPE 69 117 99
'WFDC10B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S15816.  Gene #1564: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WFDC10B MUTATED 1 0 0 1 0 1 0 2 0
WFDC10B WILD-TYPE 40 26 30 28 39 68 20 12 22
'WFDC10B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0445 (Fisher's exact test), Q value = 0.22

Table S15817.  Gene #1564: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WFDC10B MUTATED 2 3 0 0
WFDC10B WILD-TYPE 98 69 72 121

Figure S4028.  Get High-res Image Gene #1564: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'WFDC10B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S15818.  Gene #1564: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WFDC10B MUTATED 2 1 2 0 0
WFDC10B WILD-TYPE 57 74 72 119 38
'WFDC10B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S15819.  Gene #1564: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WFDC10B MUTATED 1 2 1 1 0
WFDC10B WILD-TYPE 50 74 60 70 95
'WFDC10B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.55

Table S15820.  Gene #1564: 'WFDC10B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WFDC10B MUTATED 2 1 0 1 0 1 0 0 0
WFDC10B WILD-TYPE 67 47 39 15 53 19 21 38 50
'NAA15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S15821.  Gene #1565: 'NAA15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NAA15 MUTATED 2 0 0 2 0
NAA15 WILD-TYPE 30 18 46 25 23
'NAA15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S15822.  Gene #1565: 'NAA15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NAA15 MUTATED 3 1 0
NAA15 WILD-TYPE 40 66 36
'NAA15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00532 (Fisher's exact test), Q value = 0.069

Table S15823.  Gene #1565: 'NAA15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NAA15 MUTATED 1 2 12
NAA15 WILD-TYPE 41 171 135

Figure S4029.  Get High-res Image Gene #1565: 'NAA15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NAA15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S15824.  Gene #1565: 'NAA15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NAA15 MUTATED 5 1 3
NAA15 WILD-TYPE 57 72 72
'NAA15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0061 (Fisher's exact test), Q value = 0.074

Table S15825.  Gene #1565: 'NAA15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NAA15 MUTATED 0 4 10
NAA15 WILD-TYPE 70 116 90

Figure S4030.  Get High-res Image Gene #1565: 'NAA15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NAA15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S15826.  Gene #1565: 'NAA15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NAA15 MUTATED 2 0 2 2 2 5 1 0 0
NAA15 WILD-TYPE 39 26 28 27 37 64 19 14 22
'NAA15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.47

Table S15827.  Gene #1565: 'NAA15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NAA15 MUTATED 1 5 4 5
NAA15 WILD-TYPE 99 67 68 116
'NAA15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0402 (Fisher's exact test), Q value = 0.21

Table S15828.  Gene #1565: 'NAA15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NAA15 MUTATED 2 3 5 1 4
NAA15 WILD-TYPE 57 72 69 118 34

Figure S4031.  Get High-res Image Gene #1565: 'NAA15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NAA15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S15829.  Gene #1565: 'NAA15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NAA15 MUTATED 2 4 2 1 5
NAA15 WILD-TYPE 49 72 59 70 90
'NAA15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0589 (Fisher's exact test), Q value = 0.26

Table S15830.  Gene #1565: 'NAA15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NAA15 MUTATED 1 4 0 3 2 1 0 2 1
NAA15 WILD-TYPE 68 44 39 13 51 19 21 36 49
'ACTL7B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S15831.  Gene #1566: 'ACTL7B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ACTL7B MUTATED 0 1 3
ACTL7B WILD-TYPE 42 172 144
'ACTL7B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S15832.  Gene #1566: 'ACTL7B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ACTL7B MUTATED 0 2 1
ACTL7B WILD-TYPE 70 118 99
'ACTL7B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.98

Table S15833.  Gene #1566: 'ACTL7B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ACTL7B MUTATED 0 1 1 0 0 1 0 0 0
ACTL7B WILD-TYPE 41 25 29 29 39 68 20 14 22
'ACTL7B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.65

Table S15834.  Gene #1566: 'ACTL7B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ACTL7B MUTATED 0 1 0 3
ACTL7B WILD-TYPE 100 71 72 118
'ACTL7B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.91

Table S15835.  Gene #1566: 'ACTL7B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ACTL7B MUTATED 0 0 1 2 1
ACTL7B WILD-TYPE 59 75 73 117 37
'ACTL7B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S15836.  Gene #1566: 'ACTL7B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ACTL7B MUTATED 1 1 1 0 1
ACTL7B WILD-TYPE 50 75 60 71 94
'ACTL7B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0334 (Fisher's exact test), Q value = 0.19

Table S15837.  Gene #1566: 'ACTL7B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ACTL7B MUTATED 0 0 0 1 1 1 1 0 0
ACTL7B WILD-TYPE 69 48 39 15 52 19 20 38 50

Figure S4032.  Get High-res Image Gene #1566: 'ACTL7B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COL4A6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S15838.  Gene #1567: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
COL4A6 MUTATED 3 1 2 3 1
COL4A6 WILD-TYPE 29 17 44 24 22
'COL4A6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S15839.  Gene #1567: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
COL4A6 MUTATED 3 4 3
COL4A6 WILD-TYPE 40 63 33
'COL4A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S15840.  Gene #1567: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
COL4A6 MUTATED 1 7 13
COL4A6 WILD-TYPE 41 166 134
'COL4A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.73

Table S15841.  Gene #1567: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
COL4A6 MUTATED 5 2 4
COL4A6 WILD-TYPE 57 71 71
'COL4A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.053 (Fisher's exact test), Q value = 0.25

Table S15842.  Gene #1567: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
COL4A6 MUTATED 3 3 10
COL4A6 WILD-TYPE 67 117 90
'COL4A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S15843.  Gene #1567: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
COL4A6 MUTATED 3 1 1 2 0 5 3 0 1
COL4A6 WILD-TYPE 38 25 29 27 39 64 17 14 21
'COL4A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S15844.  Gene #1567: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
COL4A6 MUTATED 3 3 6 9
COL4A6 WILD-TYPE 97 69 66 112
'COL4A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S15845.  Gene #1567: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
COL4A6 MUTATED 4 2 5 8 2
COL4A6 WILD-TYPE 55 73 69 111 36
'COL4A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.91

Table S15846.  Gene #1567: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
COL4A6 MUTATED 1 6 3 3 3
COL4A6 WILD-TYPE 50 70 58 68 92
'COL4A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0185 (Fisher's exact test), Q value = 0.14

Table S15847.  Gene #1567: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
COL4A6 MUTATED 0 4 1 2 5 2 1 0 1
COL4A6 WILD-TYPE 69 44 38 14 48 18 20 38 49

Figure S4033.  Get High-res Image Gene #1567: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COL4A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.7

Table S15848.  Gene #1567: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
COL4A6 MUTATED 0 2 2 0 0 0
COL4A6 WILD-TYPE 13 14 12 11 11 9
'COL4A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S15849.  Gene #1567: 'COL4A6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
COL4A6 MUTATED 0 1 0 0 0 0 2 0 1
COL4A6 WILD-TYPE 11 6 7 9 8 7 9 9 4
'FGD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00674 (Fisher's exact test), Q value = 0.077

Table S15850.  Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FGD3 MUTATED 3 1 8
FGD3 WILD-TYPE 39 172 139

Figure S4034.  Get High-res Image Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FGD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00149 (Fisher's exact test), Q value = 0.032

Table S15851.  Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FGD3 MUTATED 8 0 3
FGD3 WILD-TYPE 54 73 72

Figure S4035.  Get High-res Image Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FGD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.19

Table S15852.  Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FGD3 MUTATED 1 2 8
FGD3 WILD-TYPE 69 118 92

Figure S4036.  Get High-res Image Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FGD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S15853.  Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FGD3 MUTATED 1 0 0 1 1 5 2 1 0
FGD3 WILD-TYPE 40 26 30 28 38 64 18 13 22
'FGD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0388 (Fisher's exact test), Q value = 0.21

Table S15854.  Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FGD3 MUTATED 1 5 5 2
FGD3 WILD-TYPE 99 67 67 119

Figure S4037.  Get High-res Image Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FGD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0079

Table S15855.  Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FGD3 MUTATED 1 1 9 0 2
FGD3 WILD-TYPE 58 74 65 119 36

Figure S4038.  Get High-res Image Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FGD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0034 (Fisher's exact test), Q value = 0.052

Table S15856.  Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FGD3 MUTATED 0 8 3 0 2
FGD3 WILD-TYPE 51 68 58 71 93

Figure S4039.  Get High-res Image Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FGD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00873 (Fisher's exact test), Q value = 0.088

Table S15857.  Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FGD3 MUTATED 2 3 0 4 2 0 0 2 0
FGD3 WILD-TYPE 67 45 39 12 51 20 21 36 50

Figure S4040.  Get High-res Image Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FGD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.25

Table S15858.  Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FGD3 MUTATED 0 1 0 0 3 1
FGD3 WILD-TYPE 13 15 14 11 8 8
'FGD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S15859.  Gene #1568: 'FGD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FGD3 MUTATED 1 0 0 2 0 2 0 0 0
FGD3 WILD-TYPE 10 7 7 7 8 5 11 9 5
'PHKB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S15860.  Gene #1569: 'PHKB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PHKB MUTATED 0 2 10
PHKB WILD-TYPE 42 171 137

Figure S4041.  Get High-res Image Gene #1569: 'PHKB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PHKB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.85

Table S15861.  Gene #1569: 'PHKB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PHKB MUTATED 2 2 5
PHKB WILD-TYPE 60 71 70
'PHKB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S15862.  Gene #1569: 'PHKB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PHKB MUTATED 2 4 5
PHKB WILD-TYPE 68 116 95
'PHKB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S15863.  Gene #1569: 'PHKB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PHKB MUTATED 2 2 1 1 1 4 0 0 0
PHKB WILD-TYPE 39 24 29 28 38 65 20 14 22
'PHKB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.093 (Fisher's exact test), Q value = 0.33

Table S15864.  Gene #1569: 'PHKB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PHKB MUTATED 2 6 2 2
PHKB WILD-TYPE 98 66 70 119
'PHKB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.94

Table S15865.  Gene #1569: 'PHKB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PHKB MUTATED 2 3 4 2 1
PHKB WILD-TYPE 57 72 70 117 37
'PHKB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S15866.  Gene #1569: 'PHKB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PHKB MUTATED 1 4 2 0 4
PHKB WILD-TYPE 50 72 59 71 91
'PHKB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S15867.  Gene #1569: 'PHKB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PHKB MUTATED 1 3 0 2 1 1 0 2 1
PHKB WILD-TYPE 68 45 39 14 52 19 21 36 49
'CHD5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S15868.  Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CHD5 MUTATED 8 0 0 1 0
CHD5 WILD-TYPE 24 18 46 26 23

Figure S4042.  Get High-res Image Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CHD5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0081

Table S15869.  Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CHD5 MUTATED 8 0 1
CHD5 WILD-TYPE 35 67 35

Figure S4043.  Get High-res Image Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CHD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S15870.  Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CHD5 MUTATED 1 3 23
CHD5 WILD-TYPE 41 170 124

Figure S4044.  Get High-res Image Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CHD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S15871.  Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CHD5 MUTATED 7 3 8
CHD5 WILD-TYPE 55 70 67
'CHD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 0.27

Table S15872.  Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CHD5 MUTATED 3 6 13
CHD5 WILD-TYPE 67 114 87
'CHD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S15873.  Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CHD5 MUTATED 3 2 1 2 3 8 2 1 0
CHD5 WILD-TYPE 38 24 29 27 36 61 18 13 22
'CHD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S15874.  Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CHD5 MUTATED 3 9 5 11
CHD5 WILD-TYPE 97 63 67 110
'CHD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00203 (Fisher's exact test), Q value = 0.038

Table S15875.  Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CHD5 MUTATED 2 4 10 4 8
CHD5 WILD-TYPE 57 71 64 115 30

Figure S4045.  Get High-res Image Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CHD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.2

Table S15876.  Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CHD5 MUTATED 2 7 5 1 13
CHD5 WILD-TYPE 49 69 56 70 82

Figure S4046.  Get High-res Image Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CHD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00413 (Fisher's exact test), Q value = 0.058

Table S15877.  Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CHD5 MUTATED 3 5 0 1 3 4 1 9 2
CHD5 WILD-TYPE 66 43 39 15 50 16 20 29 48

Figure S4047.  Get High-res Image Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CHD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S15878.  Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CHD5 MUTATED 1 0 2 0 2 0
CHD5 WILD-TYPE 12 16 12 11 9 9
'CHD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S15879.  Gene #1570: 'CHD5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CHD5 MUTATED 0 0 0 1 2 0 1 0 1
CHD5 WILD-TYPE 11 7 7 8 6 7 10 9 4
'GSTA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.91

Table S15880.  Gene #1571: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GSTA5 MUTATED 1 2 3
GSTA5 WILD-TYPE 41 171 144
'GSTA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S15881.  Gene #1571: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GSTA5 MUTATED 3 2 0
GSTA5 WILD-TYPE 59 71 75
'GSTA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S15882.  Gene #1571: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GSTA5 MUTATED 1 1 3
GSTA5 WILD-TYPE 69 119 97
'GSTA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S15883.  Gene #1571: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GSTA5 MUTATED 2 0 0 0 2 1 0 0 0
GSTA5 WILD-TYPE 39 26 30 29 37 68 20 14 22
'GSTA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.72

Table S15884.  Gene #1571: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GSTA5 MUTATED 1 1 3 1
GSTA5 WILD-TYPE 99 71 69 120
'GSTA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0342 (Fisher's exact test), Q value = 0.2

Table S15885.  Gene #1571: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GSTA5 MUTATED 3 2 0 0 1
GSTA5 WILD-TYPE 56 73 74 119 37

Figure S4048.  Get High-res Image Gene #1571: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GSTA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.53

Table S15886.  Gene #1571: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GSTA5 MUTATED 0 1 3 0 2
GSTA5 WILD-TYPE 51 75 58 71 93
'GSTA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S15887.  Gene #1571: 'GSTA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GSTA5 MUTATED 1 2 0 0 1 0 0 1 1
GSTA5 WILD-TYPE 68 46 39 16 52 20 21 37 49
'C5ORF42 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00199 (Fisher's exact test), Q value = 0.038

Table S15888.  Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C5ORF42 MUTATED 6 0 0 3 0
C5ORF42 WILD-TYPE 26 18 46 24 23

Figure S4049.  Get High-res Image Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C5ORF42 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0526 (Fisher's exact test), Q value = 0.25

Table S15889.  Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C5ORF42 MUTATED 6 2 1
C5ORF42 WILD-TYPE 37 65 35
'C5ORF42 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S15890.  Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C5ORF42 MUTATED 1 5 26
C5ORF42 WILD-TYPE 41 168 121

Figure S4050.  Get High-res Image Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C5ORF42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.14

Table S15891.  Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C5ORF42 MUTATED 12 3 8
C5ORF42 WILD-TYPE 50 70 67

Figure S4051.  Get High-res Image Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C5ORF42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S15892.  Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C5ORF42 MUTATED 4 7 16
C5ORF42 WILD-TYPE 66 113 84

Figure S4052.  Get High-res Image Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C5ORF42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0938 (Fisher's exact test), Q value = 0.33

Table S15893.  Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C5ORF42 MUTATED 3 1 1 1 5 13 1 2 0
C5ORF42 WILD-TYPE 38 25 29 28 34 56 19 12 22
'C5ORF42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.49

Table S15894.  Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C5ORF42 MUTATED 5 9 9 9
C5ORF42 WILD-TYPE 95 63 63 112
'C5ORF42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0048

Table S15895.  Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C5ORF42 MUTATED 4 5 14 2 7
C5ORF42 WILD-TYPE 55 70 60 117 31

Figure S4053.  Get High-res Image Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0508 (Fisher's exact test), Q value = 0.24

Table S15896.  Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C5ORF42 MUTATED 2 12 6 2 9
C5ORF42 WILD-TYPE 49 64 55 69 86
'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 0.22

Table S15897.  Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C5ORF42 MUTATED 7 7 1 4 3 1 1 6 1
C5ORF42 WILD-TYPE 62 41 38 12 50 19 20 32 49

Figure S4054.  Get High-res Image Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S15898.  Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C5ORF42 MUTATED 1 3 3 0 4 1
C5ORF42 WILD-TYPE 12 13 11 11 7 8
'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.79

Table S15899.  Gene #1572: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C5ORF42 MUTATED 2 0 0 2 2 0 4 1 1
C5ORF42 WILD-TYPE 9 7 7 7 6 7 7 8 4
'ESYT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.94

Table S15900.  Gene #1573: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ESYT1 MUTATED 1 3 5
ESYT1 WILD-TYPE 41 170 142
'ESYT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 0.34

Table S15901.  Gene #1573: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ESYT1 MUTATED 1 1 6
ESYT1 WILD-TYPE 61 72 69
'ESYT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S15902.  Gene #1573: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ESYT1 MUTATED 1 5 2
ESYT1 WILD-TYPE 69 115 98
'ESYT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 0.88

Table S15903.  Gene #1573: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ESYT1 MUTATED 0 0 2 2 1 2 0 0 1
ESYT1 WILD-TYPE 41 26 28 27 38 67 20 14 21
'ESYT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.1

Table S15904.  Gene #1573: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ESYT1 MUTATED 1 6 1 1
ESYT1 WILD-TYPE 99 66 71 120

Figure S4055.  Get High-res Image Gene #1573: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ESYT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0617 (Fisher's exact test), Q value = 0.27

Table S15905.  Gene #1573: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ESYT1 MUTATED 1 3 4 0 1
ESYT1 WILD-TYPE 58 72 70 119 37
'ESYT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 0.29

Table S15906.  Gene #1573: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ESYT1 MUTATED 2 5 1 0 1
ESYT1 WILD-TYPE 49 71 60 71 94
'ESYT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00041 (Fisher's exact test), Q value = 0.014

Table S15907.  Gene #1573: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ESYT1 MUTATED 0 1 0 4 2 1 0 1 0
ESYT1 WILD-TYPE 69 47 39 12 51 19 21 37 50

Figure S4056.  Get High-res Image Gene #1573: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ESYT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S15908.  Gene #1573: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ESYT1 MUTATED 2 1 0 0 1 0
ESYT1 WILD-TYPE 11 15 14 11 10 9
'ESYT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S15909.  Gene #1573: 'ESYT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ESYT1 MUTATED 0 1 0 2 0 0 0 0 1
ESYT1 WILD-TYPE 11 6 7 7 8 7 11 9 4
'ADAM30 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0555 (Fisher's exact test), Q value = 0.25

Table S15910.  Gene #1574: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ADAM30 MUTATED 3 0 0 0 0
ADAM30 WILD-TYPE 29 18 46 27 23
'ADAM30 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 0.21

Table S15911.  Gene #1574: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ADAM30 MUTATED 3 0 0
ADAM30 WILD-TYPE 40 67 36

Figure S4057.  Get High-res Image Gene #1574: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ADAM30 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.21

Table S15912.  Gene #1574: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ADAM30 MUTATED 0 1 7
ADAM30 WILD-TYPE 42 172 140

Figure S4058.  Get High-res Image Gene #1574: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADAM30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.78

Table S15913.  Gene #1574: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ADAM30 MUTATED 3 1 1
ADAM30 WILD-TYPE 59 72 74
'ADAM30 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S15914.  Gene #1574: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ADAM30 MUTATED 0 1 4
ADAM30 WILD-TYPE 70 119 96
'ADAM30 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S15915.  Gene #1574: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ADAM30 MUTATED 0 0 0 1 0 3 1 0 0
ADAM30 WILD-TYPE 41 26 30 28 39 66 19 14 22
'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S15916.  Gene #1574: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ADAM30 MUTATED 1 2 2 3
ADAM30 WILD-TYPE 99 70 70 118
'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00375 (Fisher's exact test), Q value = 0.055

Table S15917.  Gene #1574: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ADAM30 MUTATED 0 1 4 0 3
ADAM30 WILD-TYPE 59 74 70 119 35

Figure S4059.  Get High-res Image Gene #1574: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S15918.  Gene #1574: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ADAM30 MUTATED 0 3 1 2 2
ADAM30 WILD-TYPE 51 73 60 69 93
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S15919.  Gene #1574: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ADAM30 MUTATED 2 2 0 1 0 0 1 2 0
ADAM30 WILD-TYPE 67 46 39 15 53 20 20 36 50
'PNPLA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00223 (Fisher's exact test), Q value = 0.04

Table S15920.  Gene #1575: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PNPLA5 MUTATED 2 0 8
PNPLA5 WILD-TYPE 40 173 139

Figure S4060.  Get High-res Image Gene #1575: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PNPLA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0677 (Fisher's exact test), Q value = 0.28

Table S15921.  Gene #1575: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PNPLA5 MUTATED 3 0 5
PNPLA5 WILD-TYPE 59 73 70
'PNPLA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15922.  Gene #1575: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PNPLA5 MUTATED 2 3 3
PNPLA5 WILD-TYPE 68 117 97
'PNPLA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S15923.  Gene #1575: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PNPLA5 MUTATED 0 1 0 2 2 3 0 0 0
PNPLA5 WILD-TYPE 41 25 30 27 37 66 20 14 22
'PNPLA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.16

Table S15924.  Gene #1575: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PNPLA5 MUTATED 0 5 2 2
PNPLA5 WILD-TYPE 100 67 70 119

Figure S4061.  Get High-res Image Gene #1575: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PNPLA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00113 (Fisher's exact test), Q value = 0.027

Table S15925.  Gene #1575: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PNPLA5 MUTATED 0 0 7 1 1
PNPLA5 WILD-TYPE 59 75 67 118 37

Figure S4062.  Get High-res Image Gene #1575: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PNPLA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0401 (Fisher's exact test), Q value = 0.21

Table S15926.  Gene #1575: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PNPLA5 MUTATED 0 6 0 1 3
PNPLA5 WILD-TYPE 51 70 61 70 92

Figure S4063.  Get High-res Image Gene #1575: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PNPLA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S15927.  Gene #1575: 'PNPLA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PNPLA5 MUTATED 3 1 1 2 0 0 1 1 1
PNPLA5 WILD-TYPE 66 47 38 14 53 20 20 37 49
'TMPRSS5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S15928.  Gene #1576: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMPRSS5 MUTATED 1 1 5
TMPRSS5 WILD-TYPE 41 172 142
'TMPRSS5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S15929.  Gene #1576: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TMPRSS5 MUTATED 3 0 2
TMPRSS5 WILD-TYPE 59 73 73
'TMPRSS5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S15930.  Gene #1576: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TMPRSS5 MUTATED 1 2 3
TMPRSS5 WILD-TYPE 69 118 97
'TMPRSS5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.94

Table S15931.  Gene #1576: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TMPRSS5 MUTATED 1 0 0 1 1 1 1 1 0
TMPRSS5 WILD-TYPE 40 26 30 28 38 68 19 13 22
'TMPRSS5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S15932.  Gene #1576: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMPRSS5 MUTATED 0 2 3 2
TMPRSS5 WILD-TYPE 100 70 69 119
'TMPRSS5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.099

Table S15933.  Gene #1576: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMPRSS5 MUTATED 1 0 4 0 2
TMPRSS5 WILD-TYPE 58 75 70 119 36

Figure S4064.  Get High-res Image Gene #1576: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TMPRSS5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.89

Table S15934.  Gene #1576: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMPRSS5 MUTATED 1 3 1 0 2
TMPRSS5 WILD-TYPE 50 73 60 71 93
'TMPRSS5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S15935.  Gene #1576: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMPRSS5 MUTATED 2 2 0 1 0 0 0 2 0
TMPRSS5 WILD-TYPE 67 46 39 15 53 20 21 36 50
'TMPRSS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S15936.  Gene #1576: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TMPRSS5 MUTATED 0 0 1 0 1 1
TMPRSS5 WILD-TYPE 13 16 13 11 10 8
'TMPRSS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S15937.  Gene #1576: 'TMPRSS5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TMPRSS5 MUTATED 1 0 0 1 1 0 0 0 0
TMPRSS5 WILD-TYPE 10 7 7 8 7 7 11 9 5
'CSF3R MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S15938.  Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CSF3R MUTATED 2 0 0 3 1
CSF3R WILD-TYPE 30 18 46 24 22
'CSF3R MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S15939.  Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CSF3R MUTATED 4 1 1
CSF3R WILD-TYPE 39 66 35
'CSF3R MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S15940.  Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CSF3R MUTATED 2 0 12
CSF3R WILD-TYPE 40 173 135

Figure S4065.  Get High-res Image Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CSF3R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S15941.  Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CSF3R MUTATED 1 0 6
CSF3R WILD-TYPE 61 73 69

Figure S4066.  Get High-res Image Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CSF3R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S15942.  Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CSF3R MUTATED 5 4 3
CSF3R WILD-TYPE 65 116 97
'CSF3R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S15943.  Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CSF3R MUTATED 2 1 1 2 1 3 2 0 0
CSF3R WILD-TYPE 39 25 29 27 38 66 18 14 22
'CSF3R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.21

Table S15944.  Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CSF3R MUTATED 0 5 3 6
CSF3R WILD-TYPE 100 67 69 115

Figure S4067.  Get High-res Image Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CSF3R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0081

Table S15945.  Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CSF3R MUTATED 0 0 8 2 4
CSF3R WILD-TYPE 59 75 66 117 34

Figure S4068.  Get High-res Image Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00194 (Fisher's exact test), Q value = 0.037

Table S15946.  Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CSF3R MUTATED 0 7 0 0 6
CSF3R WILD-TYPE 51 69 61 71 89

Figure S4069.  Get High-res Image Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S15947.  Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CSF3R MUTATED 0 2 0 5 0 1 1 3 1
CSF3R WILD-TYPE 69 46 39 11 53 19 20 35 49

Figure S4070.  Get High-res Image Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S15948.  Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CSF3R MUTATED 1 1 0 0 1 0
CSF3R WILD-TYPE 12 15 14 11 10 9
'CSF3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S15949.  Gene #1577: 'CSF3R MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CSF3R MUTATED 0 0 0 1 1 0 1 0 0
CSF3R WILD-TYPE 11 7 7 8 7 7 10 9 5
'VANGL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S15950.  Gene #1578: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
VANGL1 MUTATED 1 3 6
VANGL1 WILD-TYPE 41 170 141
'VANGL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.77

Table S15951.  Gene #1578: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
VANGL1 MUTATED 3 1 4
VANGL1 WILD-TYPE 59 72 71
'VANGL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.99

Table S15952.  Gene #1578: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
VANGL1 MUTATED 1 4 4
VANGL1 WILD-TYPE 69 116 96
'VANGL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S15953.  Gene #1578: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
VANGL1 MUTATED 2 2 1 0 1 3 0 0 0
VANGL1 WILD-TYPE 39 24 29 29 38 66 20 14 22
'VANGL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S15954.  Gene #1578: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
VANGL1 MUTATED 2 4 1 3
VANGL1 WILD-TYPE 98 68 71 118
'VANGL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S15955.  Gene #1578: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
VANGL1 MUTATED 0 3 3 2 2
VANGL1 WILD-TYPE 59 72 71 117 36
'VANGL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.17

Table S15956.  Gene #1578: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
VANGL1 MUTATED 1 6 0 0 3
VANGL1 WILD-TYPE 50 70 61 71 92

Figure S4071.  Get High-res Image Gene #1578: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'VANGL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.65

Table S15957.  Gene #1578: 'VANGL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
VANGL1 MUTATED 2 1 0 1 2 1 0 3 0
VANGL1 WILD-TYPE 67 47 39 15 51 19 21 35 50
'MST1R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00928 (Fisher's exact test), Q value = 0.091

Table S15958.  Gene #1579: 'MST1R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MST1R MUTATED 1 2 11
MST1R WILD-TYPE 41 171 136

Figure S4072.  Get High-res Image Gene #1579: 'MST1R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MST1R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0786 (Fisher's exact test), Q value = 0.3

Table S15959.  Gene #1579: 'MST1R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MST1R MUTATED 5 1 7
MST1R WILD-TYPE 57 72 68
'MST1R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S15960.  Gene #1579: 'MST1R MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MST1R MUTATED 2 4 6
MST1R WILD-TYPE 68 116 94
'MST1R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.74

Table S15961.  Gene #1579: 'MST1R MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MST1R MUTATED 3 0 0 2 1 6 0 0 0
MST1R WILD-TYPE 38 26 30 27 38 63 20 14 22
'MST1R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0023 (Fisher's exact test), Q value = 0.041

Table S15962.  Gene #1579: 'MST1R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MST1R MUTATED 1 6 6 1
MST1R WILD-TYPE 99 66 66 120

Figure S4073.  Get High-res Image Gene #1579: 'MST1R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MST1R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S15963.  Gene #1579: 'MST1R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MST1R MUTATED 1 1 11 0 1
MST1R WILD-TYPE 58 74 63 119 37

Figure S4074.  Get High-res Image Gene #1579: 'MST1R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MST1R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00188 (Fisher's exact test), Q value = 0.036

Table S15964.  Gene #1579: 'MST1R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MST1R MUTATED 0 9 3 1 1
MST1R WILD-TYPE 51 67 58 70 94

Figure S4075.  Get High-res Image Gene #1579: 'MST1R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MST1R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0597 (Fisher's exact test), Q value = 0.26

Table S15965.  Gene #1579: 'MST1R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MST1R MUTATED 4 5 1 2 1 1 0 0 0
MST1R WILD-TYPE 65 43 38 14 52 19 21 38 50
'MST1R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0876 (Fisher's exact test), Q value = 0.32

Table S15966.  Gene #1579: 'MST1R MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MST1R MUTATED 0 3 3 0 0 0
MST1R WILD-TYPE 13 13 11 11 11 9
'MST1R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.77

Table S15967.  Gene #1579: 'MST1R MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MST1R MUTATED 1 0 0 0 1 2 1 0 1
MST1R WILD-TYPE 10 7 7 9 7 5 10 9 4
'OR5H1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 0.25

Table S15968.  Gene #1580: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OR5H1 MUTATED 3 0 0 0 0
OR5H1 WILD-TYPE 29 18 46 27 23
'OR5H1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S15969.  Gene #1580: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OR5H1 MUTATED 2 0 1
OR5H1 WILD-TYPE 41 67 35
'OR5H1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S15970.  Gene #1580: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR5H1 MUTATED 2 2 6
OR5H1 WILD-TYPE 40 171 141
'OR5H1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.73

Table S15971.  Gene #1580: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR5H1 MUTATED 2 1 4
OR5H1 WILD-TYPE 60 72 71
'OR5H1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S15972.  Gene #1580: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR5H1 MUTATED 1 3 4
OR5H1 WILD-TYPE 69 117 96
'OR5H1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 0.93

Table S15973.  Gene #1580: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR5H1 MUTATED 2 1 0 2 0 2 1 0 0
OR5H1 WILD-TYPE 39 25 30 27 39 67 19 14 22
'OR5H1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S15974.  Gene #1580: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR5H1 MUTATED 2 4 1 3
OR5H1 WILD-TYPE 98 68 71 118
'OR5H1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S15975.  Gene #1580: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR5H1 MUTATED 1 2 4 1 2
OR5H1 WILD-TYPE 58 73 70 118 36
'OR5H1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0876 (Fisher's exact test), Q value = 0.32

Table S15976.  Gene #1580: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR5H1 MUTATED 2 5 0 1 1
OR5H1 WILD-TYPE 49 71 61 70 94
'OR5H1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0267 (Fisher's exact test), Q value = 0.17

Table S15977.  Gene #1580: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR5H1 MUTATED 2 1 0 3 2 0 1 0 0
OR5H1 WILD-TYPE 67 47 39 13 51 20 20 38 50

Figure S4076.  Get High-res Image Gene #1580: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OR5H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S15978.  Gene #1580: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR5H1 MUTATED 0 1 0 0 2 0
OR5H1 WILD-TYPE 13 15 14 11 9 9
'OR5H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S15979.  Gene #1580: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR5H1 MUTATED 1 0 0 2 0 0 0 0 0
OR5H1 WILD-TYPE 10 7 7 7 8 7 11 9 5
'VWA5A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S15980.  Gene #1581: 'VWA5A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
VWA5A MUTATED 3 0 1 2 0
VWA5A WILD-TYPE 29 18 45 25 23
'VWA5A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S15981.  Gene #1581: 'VWA5A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
VWA5A MUTATED 3 3 0
VWA5A WILD-TYPE 40 64 36
'VWA5A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S15982.  Gene #1581: 'VWA5A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
VWA5A MUTATED 1 3 8
VWA5A WILD-TYPE 41 170 139
'VWA5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S15983.  Gene #1581: 'VWA5A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
VWA5A MUTATED 1 2 3
VWA5A WILD-TYPE 61 71 72
'VWA5A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.92

Table S15984.  Gene #1581: 'VWA5A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
VWA5A MUTATED 2 3 5
VWA5A WILD-TYPE 68 117 95
'VWA5A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S15985.  Gene #1581: 'VWA5A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
VWA5A MUTATED 1 0 1 2 1 4 1 0 0
VWA5A WILD-TYPE 40 26 29 27 38 65 19 14 22
'VWA5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S15986.  Gene #1581: 'VWA5A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
VWA5A MUTATED 1 4 2 5
VWA5A WILD-TYPE 99 68 70 116
'VWA5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S15987.  Gene #1581: 'VWA5A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
VWA5A MUTATED 2 1 3 4 2
VWA5A WILD-TYPE 57 74 71 115 36
'VWA5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S15988.  Gene #1581: 'VWA5A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
VWA5A MUTATED 0 4 2 1 5
VWA5A WILD-TYPE 51 72 59 70 90
'VWA5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00147 (Fisher's exact test), Q value = 0.032

Table S15989.  Gene #1581: 'VWA5A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
VWA5A MUTATED 0 2 0 3 1 1 1 4 0
VWA5A WILD-TYPE 69 46 39 13 52 19 20 34 50

Figure S4077.  Get High-res Image Gene #1581: 'VWA5A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'VWA5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0958 (Fisher's exact test), Q value = 0.34

Table S15990.  Gene #1581: 'VWA5A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
VWA5A MUTATED 0 0 0 1 2 0
VWA5A WILD-TYPE 13 16 14 10 9 9
'VWA5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S15991.  Gene #1581: 'VWA5A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
VWA5A MUTATED 0 0 1 2 0 0 0 0 0
VWA5A WILD-TYPE 11 7 6 7 8 7 11 9 5
'ABCF3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S15992.  Gene #1582: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ABCF3 MUTATED 2 0 0 1 0
ABCF3 WILD-TYPE 30 18 46 26 23
'ABCF3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.039 (Fisher's exact test), Q value = 0.21

Table S15993.  Gene #1582: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ABCF3 MUTATED 3 0 0
ABCF3 WILD-TYPE 40 67 36

Figure S4078.  Get High-res Image Gene #1582: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ABCF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.16

Table S15994.  Gene #1582: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ABCF3 MUTATED 2 2 10
ABCF3 WILD-TYPE 40 171 137

Figure S4079.  Get High-res Image Gene #1582: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ABCF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S15995.  Gene #1582: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ABCF3 MUTATED 4 3 5
ABCF3 WILD-TYPE 58 70 70
'ABCF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S15996.  Gene #1582: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ABCF3 MUTATED 3 6 6
ABCF3 WILD-TYPE 67 114 94
'ABCF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S15997.  Gene #1582: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ABCF3 MUTATED 2 2 1 1 1 4 2 1 1
ABCF3 WILD-TYPE 39 24 29 28 38 65 18 13 21
'ABCF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0809 (Fisher's exact test), Q value = 0.31

Table S15998.  Gene #1582: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ABCF3 MUTATED 2 7 3 3
ABCF3 WILD-TYPE 98 65 69 118
'ABCF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0878 (Fisher's exact test), Q value = 0.32

Table S15999.  Gene #1582: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ABCF3 MUTATED 2 4 5 1 3
ABCF3 WILD-TYPE 57 71 69 118 35
'ABCF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S16000.  Gene #1582: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ABCF3 MUTATED 2 6 2 0 5
ABCF3 WILD-TYPE 49 70 59 71 90
'ABCF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.47

Table S16001.  Gene #1582: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ABCF3 MUTATED 2 3 1 3 1 1 0 3 1
ABCF3 WILD-TYPE 67 45 38 13 52 19 21 35 49
'ABCF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00642 (Fisher's exact test), Q value = 0.075

Table S16002.  Gene #1582: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ABCF3 MUTATED 0 0 0 0 3 0
ABCF3 WILD-TYPE 13 16 14 11 8 9

Figure S4080.  Get High-res Image Gene #1582: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ABCF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S16003.  Gene #1582: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ABCF3 MUTATED 0 0 0 1 0 1 1 0 0
ABCF3 WILD-TYPE 11 7 7 8 8 6 10 9 5
'CUBN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00737 (Fisher's exact test), Q value = 0.08

Table S16004.  Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CUBN MUTATED 6 2 1 8 2
CUBN WILD-TYPE 26 16 45 19 21

Figure S4081.  Get High-res Image Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CUBN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.54

Table S16005.  Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CUBN MUTATED 8 9 2
CUBN WILD-TYPE 35 58 34
'CUBN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00042 (Fisher's exact test), Q value = 0.014

Table S16006.  Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CUBN MUTATED 3 14 34
CUBN WILD-TYPE 39 159 113

Figure S4082.  Get High-res Image Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CUBN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0426 (Fisher's exact test), Q value = 0.22

Table S16007.  Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CUBN MUTATED 8 6 17
CUBN WILD-TYPE 54 67 58

Figure S4083.  Get High-res Image Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CUBN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16008.  Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CUBN MUTATED 10 17 15
CUBN WILD-TYPE 60 103 85
'CUBN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.9

Table S16009.  Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CUBN MUTATED 6 1 6 7 4 11 3 2 2
CUBN WILD-TYPE 35 25 24 22 35 58 17 12 20
'CUBN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S16010.  Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CUBN MUTATED 8 11 14 18
CUBN WILD-TYPE 92 61 58 103
'CUBN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.14

Table S16011.  Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CUBN MUTATED 7 6 18 12 8
CUBN WILD-TYPE 52 69 56 107 30

Figure S4084.  Get High-res Image Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CUBN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.13

Table S16012.  Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CUBN MUTATED 2 16 10 5 16
CUBN WILD-TYPE 49 60 51 66 79

Figure S4085.  Get High-res Image Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CUBN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S16013.  Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CUBN MUTATED 9 10 3 6 5 3 2 9 2
CUBN WILD-TYPE 60 38 36 10 48 17 19 29 48

Figure S4086.  Get High-res Image Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CUBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.48

Table S16014.  Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CUBN MUTATED 1 2 4 1 5 1
CUBN WILD-TYPE 12 14 10 10 6 8
'CUBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.8

Table S16015.  Gene #1583: 'CUBN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CUBN MUTATED 1 0 1 2 4 1 3 1 1
CUBN WILD-TYPE 10 7 6 7 4 6 8 8 4
'LIPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.2

Table S16016.  Gene #1584: 'LIPH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LIPH MUTATED 1 1 7
LIPH WILD-TYPE 41 172 140

Figure S4087.  Get High-res Image Gene #1584: 'LIPH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LIPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16017.  Gene #1584: 'LIPH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LIPH MUTATED 2 2 3
LIPH WILD-TYPE 60 71 72
'LIPH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S16018.  Gene #1584: 'LIPH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LIPH MUTATED 1 2 5
LIPH WILD-TYPE 69 118 95
'LIPH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S16019.  Gene #1584: 'LIPH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LIPH MUTATED 1 0 1 1 1 3 0 1 0
LIPH WILD-TYPE 40 26 29 28 38 66 20 13 22
'LIPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S16020.  Gene #1584: 'LIPH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LIPH MUTATED 2 4 1 2
LIPH WILD-TYPE 98 68 71 119
'LIPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S16021.  Gene #1584: 'LIPH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LIPH MUTATED 1 2 4 1 1
LIPH WILD-TYPE 58 73 70 118 37
'LIPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S16022.  Gene #1584: 'LIPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LIPH MUTATED 1 3 2 1 2
LIPH WILD-TYPE 50 73 59 70 93
'LIPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0631 (Fisher's exact test), Q value = 0.27

Table S16023.  Gene #1584: 'LIPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LIPH MUTATED 4 1 0 2 0 1 0 1 0
LIPH WILD-TYPE 65 47 39 14 53 19 21 37 50
'SHQ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.98

Table S16024.  Gene #1585: 'SHQ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SHQ1 MUTATED 0 5 3
SHQ1 WILD-TYPE 42 168 144
'SHQ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S16025.  Gene #1585: 'SHQ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SHQ1 MUTATED 3 1 1
SHQ1 WILD-TYPE 59 72 74
'SHQ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16026.  Gene #1585: 'SHQ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SHQ1 MUTATED 2 3 2
SHQ1 WILD-TYPE 68 117 98
'SHQ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 0.75

Table S16027.  Gene #1585: 'SHQ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SHQ1 MUTATED 0 2 1 0 1 1 1 0 1
SHQ1 WILD-TYPE 41 24 29 29 38 68 19 14 21
'SHQ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S16028.  Gene #1585: 'SHQ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SHQ1 MUTATED 1 1 4 2
SHQ1 WILD-TYPE 99 71 68 119
'SHQ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.99

Table S16029.  Gene #1585: 'SHQ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SHQ1 MUTATED 2 3 1 2 0
SHQ1 WILD-TYPE 57 72 73 117 38
'SHQ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.68

Table S16030.  Gene #1585: 'SHQ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SHQ1 MUTATED 2 1 1 0 4
SHQ1 WILD-TYPE 49 75 60 71 91
'SHQ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S16031.  Gene #1585: 'SHQ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SHQ1 MUTATED 0 2 0 0 1 2 1 0 2
SHQ1 WILD-TYPE 69 46 39 16 52 18 20 38 48
'DAB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S16032.  Gene #1586: 'DAB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DAB2 MUTATED 0 0 1 1 1
DAB2 WILD-TYPE 32 18 45 26 22
'DAB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S16033.  Gene #1586: 'DAB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DAB2 MUTATED 0 1 2
DAB2 WILD-TYPE 43 66 34
'DAB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0992 (Fisher's exact test), Q value = 0.34

Table S16034.  Gene #1586: 'DAB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DAB2 MUTATED 1 3 9
DAB2 WILD-TYPE 41 170 138
'DAB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S16035.  Gene #1586: 'DAB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DAB2 MUTATED 5 1 4
DAB2 WILD-TYPE 57 72 71
'DAB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0833 (Fisher's exact test), Q value = 0.31

Table S16036.  Gene #1586: 'DAB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DAB2 MUTATED 4 1 5
DAB2 WILD-TYPE 66 119 95
'DAB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S16037.  Gene #1586: 'DAB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DAB2 MUTATED 1 1 0 0 1 4 1 1 1
DAB2 WILD-TYPE 40 25 30 29 38 65 19 13 21
'DAB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.77

Table S16038.  Gene #1586: 'DAB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DAB2 MUTATED 2 4 4 3
DAB2 WILD-TYPE 98 68 68 118
'DAB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S16039.  Gene #1586: 'DAB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DAB2 MUTATED 2 3 5 3 0
DAB2 WILD-TYPE 57 72 69 116 38
'DAB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.73

Table S16040.  Gene #1586: 'DAB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DAB2 MUTATED 0 5 3 2 3
DAB2 WILD-TYPE 51 71 58 69 92
'DAB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S16041.  Gene #1586: 'DAB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DAB2 MUTATED 3 3 1 1 1 0 0 0 4
DAB2 WILD-TYPE 66 45 38 15 52 20 21 38 46
'DAB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S16042.  Gene #1586: 'DAB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DAB2 MUTATED 0 1 1 0 1 0
DAB2 WILD-TYPE 13 15 13 11 10 9
'DAB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0801 (Fisher's exact test), Q value = 0.31

Table S16043.  Gene #1586: 'DAB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DAB2 MUTATED 0 1 0 0 2 0 0 0 0
DAB2 WILD-TYPE 11 6 7 9 6 7 11 9 5
'IFLTD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S16044.  Gene #1587: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IFLTD1 MUTATED 2 0 1 1 0
IFLTD1 WILD-TYPE 30 18 45 26 23
'IFLTD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S16045.  Gene #1587: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IFLTD1 MUTATED 3 1 0
IFLTD1 WILD-TYPE 40 66 36
'IFLTD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S16046.  Gene #1587: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IFLTD1 MUTATED 0 4 8
IFLTD1 WILD-TYPE 42 169 139
'IFLTD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S16047.  Gene #1587: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IFLTD1 MUTATED 2 2 4
IFLTD1 WILD-TYPE 60 71 71
'IFLTD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S16048.  Gene #1587: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IFLTD1 MUTATED 1 5 4
IFLTD1 WILD-TYPE 69 115 96
'IFLTD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S16049.  Gene #1587: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IFLTD1 MUTATED 1 1 0 3 2 1 1 1 0
IFLTD1 WILD-TYPE 40 25 30 26 37 68 19 13 22
'IFLTD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.93

Table S16050.  Gene #1587: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IFLTD1 MUTATED 2 4 2 4
IFLTD1 WILD-TYPE 98 68 70 117
'IFLTD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S16051.  Gene #1587: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IFLTD1 MUTATED 2 3 3 1 3
IFLTD1 WILD-TYPE 57 72 71 118 35
'IFLTD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0852 (Fisher's exact test), Q value = 0.32

Table S16052.  Gene #1587: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IFLTD1 MUTATED 1 6 1 0 4
IFLTD1 WILD-TYPE 50 70 60 71 91
'IFLTD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S16053.  Gene #1587: 'IFLTD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IFLTD1 MUTATED 3 3 1 0 0 1 0 3 1
IFLTD1 WILD-TYPE 66 45 38 16 53 19 21 35 49
'TEX11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S16054.  Gene #1588: 'TEX11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TEX11 MUTATED 2 0 0 2 0
TEX11 WILD-TYPE 30 18 46 25 23
'TEX11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S16055.  Gene #1588: 'TEX11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TEX11 MUTATED 3 1 0
TEX11 WILD-TYPE 40 66 36
'TEX11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.91

Table S16056.  Gene #1588: 'TEX11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TEX11 MUTATED 1 7 9
TEX11 WILD-TYPE 41 166 138
'TEX11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S16057.  Gene #1588: 'TEX11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TEX11 MUTATED 2 3 8
TEX11 WILD-TYPE 60 70 67
'TEX11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S16058.  Gene #1588: 'TEX11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TEX11 MUTATED 1 6 7
TEX11 WILD-TYPE 69 114 93
'TEX11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.84

Table S16059.  Gene #1588: 'TEX11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TEX11 MUTATED 1 1 1 2 0 7 1 0 1
TEX11 WILD-TYPE 40 25 29 27 39 62 19 14 21
'TEX11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S16060.  Gene #1588: 'TEX11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TEX11 MUTATED 5 7 1 4
TEX11 WILD-TYPE 95 65 71 117
'TEX11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S16061.  Gene #1588: 'TEX11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TEX11 MUTATED 3 3 7 2 2
TEX11 WILD-TYPE 56 72 67 117 36
'TEX11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S16062.  Gene #1588: 'TEX11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TEX11 MUTATED 3 8 2 0 3
TEX11 WILD-TYPE 48 68 59 71 92

Figure S4088.  Get High-res Image Gene #1588: 'TEX11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TEX11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0027 (Fisher's exact test), Q value = 0.044

Table S16063.  Gene #1588: 'TEX11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TEX11 MUTATED 2 1 1 5 4 1 1 1 0
TEX11 WILD-TYPE 67 47 38 11 49 19 20 37 50

Figure S4089.  Get High-res Image Gene #1588: 'TEX11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TEX11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S16064.  Gene #1588: 'TEX11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TEX11 MUTATED 0 1 0 0 1 1
TEX11 WILD-TYPE 13 15 14 11 10 8
'TEX11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.76

Table S16065.  Gene #1588: 'TEX11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TEX11 MUTATED 0 0 1 1 0 1 0 0 0
TEX11 WILD-TYPE 11 7 6 8 8 6 11 9 5
'GOLGA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S16066.  Gene #1589: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GOLGA1 MUTATED 2 0 0 1 0
GOLGA1 WILD-TYPE 30 18 46 26 23
'GOLGA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S16067.  Gene #1589: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GOLGA1 MUTATED 2 0 1
GOLGA1 WILD-TYPE 41 67 35
'GOLGA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S16068.  Gene #1589: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GOLGA1 MUTATED 1 1 5
GOLGA1 WILD-TYPE 41 172 142
'GOLGA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S16069.  Gene #1589: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GOLGA1 MUTATED 1 0 3
GOLGA1 WILD-TYPE 61 73 72
'GOLGA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S16070.  Gene #1589: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GOLGA1 MUTATED 1 1 2
GOLGA1 WILD-TYPE 69 119 98
'GOLGA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S16071.  Gene #1589: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GOLGA1 MUTATED 1 0 0 1 0 1 0 0 1
GOLGA1 WILD-TYPE 40 26 30 28 39 68 20 14 21
'GOLGA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S16072.  Gene #1589: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GOLGA1 MUTATED 0 3 1 3
GOLGA1 WILD-TYPE 100 69 71 118
'GOLGA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S16073.  Gene #1589: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GOLGA1 MUTATED 0 1 3 1 2
GOLGA1 WILD-TYPE 59 74 71 118 36
'GOLGA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.86

Table S16074.  Gene #1589: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GOLGA1 MUTATED 1 3 0 1 1
GOLGA1 WILD-TYPE 50 73 61 70 94
'GOLGA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S16075.  Gene #1589: 'GOLGA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GOLGA1 MUTATED 2 0 0 1 2 0 1 0 0
GOLGA1 WILD-TYPE 67 48 39 15 51 20 20 38 50
'ZHX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S16076.  Gene #1590: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZHX2 MUTATED 4 0 2 1 0
ZHX2 WILD-TYPE 28 18 44 26 23
'ZHX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S16077.  Gene #1590: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZHX2 MUTATED 4 3 0
ZHX2 WILD-TYPE 39 64 36
'ZHX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.012

Table S16078.  Gene #1590: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZHX2 MUTATED 0 2 15
ZHX2 WILD-TYPE 42 171 132

Figure S4090.  Get High-res Image Gene #1590: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZHX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.25

Table S16079.  Gene #1590: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZHX2 MUTATED 4 0 5
ZHX2 WILD-TYPE 58 73 70
'ZHX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S16080.  Gene #1590: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZHX2 MUTATED 2 4 7
ZHX2 WILD-TYPE 68 116 93
'ZHX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S16081.  Gene #1590: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZHX2 MUTATED 1 1 2 1 2 4 2 0 0
ZHX2 WILD-TYPE 40 25 28 28 37 65 18 14 22
'ZHX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S16082.  Gene #1590: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZHX2 MUTATED 1 5 3 8
ZHX2 WILD-TYPE 99 67 69 113
'ZHX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.097

Table S16083.  Gene #1590: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZHX2 MUTATED 1 0 7 5 4
ZHX2 WILD-TYPE 58 75 67 114 34

Figure S4091.  Get High-res Image Gene #1590: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZHX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S16084.  Gene #1590: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZHX2 MUTATED 0 6 1 2 6
ZHX2 WILD-TYPE 51 70 60 69 89
'ZHX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00077 (Fisher's exact test), Q value = 0.021

Table S16085.  Gene #1590: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZHX2 MUTATED 0 3 1 4 0 1 0 4 2
ZHX2 WILD-TYPE 69 45 38 12 53 19 21 34 48

Figure S4092.  Get High-res Image Gene #1590: 'ZHX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM167B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S16086.  Gene #1591: 'FAM167B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM167B MUTATED 0 1 3
FAM167B WILD-TYPE 42 172 144
'FAM167B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S16087.  Gene #1591: 'FAM167B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM167B MUTATED 0 1 2
FAM167B WILD-TYPE 62 72 73
'FAM167B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S16088.  Gene #1591: 'FAM167B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM167B MUTATED 1 2 0 1
FAM167B WILD-TYPE 99 70 72 120
'FAM167B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S16089.  Gene #1591: 'FAM167B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM167B MUTATED 0 2 1 1 0
FAM167B WILD-TYPE 59 73 73 118 38
'FAM167B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S16090.  Gene #1591: 'FAM167B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM167B MUTATED 0 2 0 2 0
FAM167B WILD-TYPE 51 74 61 69 95
'FAM167B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.63

Table S16091.  Gene #1591: 'FAM167B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM167B MUTATED 1 0 0 1 2 0 0 0 0
FAM167B WILD-TYPE 68 48 39 15 51 20 21 38 50
'UFSP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 0.27

Table S16092.  Gene #1592: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UFSP2 MUTATED 0 0 4
UFSP2 WILD-TYPE 42 173 143
'UFSP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S16093.  Gene #1592: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UFSP2 MUTATED 1 0 2
UFSP2 WILD-TYPE 61 73 73
'UFSP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S16094.  Gene #1592: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UFSP2 MUTATED 0 2 1
UFSP2 WILD-TYPE 70 118 99
'UFSP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.6

Table S16095.  Gene #1592: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UFSP2 MUTATED 0 2 0 0 0 1 0 0 0
UFSP2 WILD-TYPE 41 24 30 29 39 68 20 14 22
'UFSP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.56

Table S16096.  Gene #1592: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UFSP2 MUTATED 0 2 0 2
UFSP2 WILD-TYPE 100 70 72 119
'UFSP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S16097.  Gene #1592: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UFSP2 MUTATED 0 0 2 1 1
UFSP2 WILD-TYPE 59 75 72 118 37
'UFSP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S16098.  Gene #1592: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UFSP2 MUTATED 0 2 0 0 1
UFSP2 WILD-TYPE 51 74 61 71 94
'UFSP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0057 (Fisher's exact test), Q value = 0.071

Table S16099.  Gene #1592: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UFSP2 MUTATED 0 0 0 2 0 0 0 0 1
UFSP2 WILD-TYPE 69 48 39 14 53 20 21 38 49

Figure S4093.  Get High-res Image Gene #1592: 'UFSP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BTBD11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.011

Table S16100.  Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BTBD11 MUTATED 7 1 0 0 0
BTBD11 WILD-TYPE 25 17 46 27 23

Figure S4094.  Get High-res Image Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BTBD11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S16101.  Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BTBD11 MUTATED 6 1 1
BTBD11 WILD-TYPE 37 66 35

Figure S4095.  Get High-res Image Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BTBD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S16102.  Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BTBD11 MUTATED 2 1 19
BTBD11 WILD-TYPE 40 172 128

Figure S4096.  Get High-res Image Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BTBD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S16103.  Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BTBD11 MUTATED 7 2 5
BTBD11 WILD-TYPE 55 71 70
'BTBD11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S16104.  Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BTBD11 MUTATED 2 8 8
BTBD11 WILD-TYPE 68 112 92
'BTBD11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S16105.  Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BTBD11 MUTATED 1 1 1 2 4 7 1 0 1
BTBD11 WILD-TYPE 40 25 29 27 35 62 19 14 21
'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S16106.  Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BTBD11 MUTATED 2 7 5 8
BTBD11 WILD-TYPE 98 65 67 113
'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00804 (Fisher's exact test), Q value = 0.084

Table S16107.  Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BTBD11 MUTATED 1 4 8 3 6
BTBD11 WILD-TYPE 58 71 66 116 32

Figure S4097.  Get High-res Image Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S16108.  Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BTBD11 MUTATED 1 8 1 4 8
BTBD11 WILD-TYPE 50 68 60 67 87
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0489 (Fisher's exact test), Q value = 0.24

Table S16109.  Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BTBD11 MUTATED 2 5 0 2 4 0 0 6 3
BTBD11 WILD-TYPE 67 43 39 14 49 20 21 32 47

Figure S4098.  Get High-res Image Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.16

Table S16110.  Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BTBD11 MUTATED 0 0 1 0 3 0
BTBD11 WILD-TYPE 13 16 13 11 8 9

Figure S4099.  Get High-res Image Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.083 (Fisher's exact test), Q value = 0.31

Table S16111.  Gene #1593: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BTBD11 MUTATED 0 0 0 0 0 1 3 0 0
BTBD11 WILD-TYPE 11 7 7 9 8 6 8 9 5
'BFAR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S16112.  Gene #1594: 'BFAR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BFAR MUTATED 0 2 6
BFAR WILD-TYPE 42 171 141
'BFAR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.62

Table S16113.  Gene #1594: 'BFAR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BFAR MUTATED 4 1 2
BFAR WILD-TYPE 58 72 73
'BFAR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00527 (Fisher's exact test), Q value = 0.068

Table S16114.  Gene #1594: 'BFAR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BFAR MUTATED 0 0 5
BFAR WILD-TYPE 70 120 95

Figure S4100.  Get High-res Image Gene #1594: 'BFAR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'BFAR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.92

Table S16115.  Gene #1594: 'BFAR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BFAR MUTATED 1 0 0 0 0 4 0 0 0
BFAR WILD-TYPE 40 26 30 29 39 65 20 14 22
'BFAR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S16116.  Gene #1594: 'BFAR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BFAR MUTATED 1 2 3 2
BFAR WILD-TYPE 99 70 69 119
'BFAR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S16117.  Gene #1594: 'BFAR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BFAR MUTATED 1 2 3 2 0
BFAR WILD-TYPE 58 73 71 117 38
'BFAR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 0.29

Table S16118.  Gene #1594: 'BFAR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BFAR MUTATED 0 5 1 0 2
BFAR WILD-TYPE 51 71 60 71 93
'BFAR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S16119.  Gene #1594: 'BFAR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BFAR MUTATED 3 3 0 0 0 0 1 0 1
BFAR WILD-TYPE 66 45 39 16 53 20 20 38 49
'SBNO1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.95

Table S16120.  Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SBNO1 MUTATED 1 0 1 2 0
SBNO1 WILD-TYPE 31 18 45 25 23
'SBNO1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S16121.  Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SBNO1 MUTATED 2 1 1
SBNO1 WILD-TYPE 41 66 35
'SBNO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0348 (Fisher's exact test), Q value = 0.2

Table S16122.  Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SBNO1 MUTATED 0 4 11
SBNO1 WILD-TYPE 42 169 136

Figure S4101.  Get High-res Image Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SBNO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0847 (Fisher's exact test), Q value = 0.32

Table S16123.  Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SBNO1 MUTATED 6 1 4
SBNO1 WILD-TYPE 56 72 71
'SBNO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.13

Table S16124.  Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SBNO1 MUTATED 0 5 9
SBNO1 WILD-TYPE 70 115 91

Figure S4102.  Get High-res Image Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SBNO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S16125.  Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SBNO1 MUTATED 1 0 1 0 3 7 1 1 0
SBNO1 WILD-TYPE 40 26 29 29 36 62 19 13 22
'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S16126.  Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SBNO1 MUTATED 3 5 4 3
SBNO1 WILD-TYPE 97 67 68 118
'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S16127.  Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SBNO1 MUTATED 3 0 8 3 1
SBNO1 WILD-TYPE 56 75 66 116 37

Figure S4103.  Get High-res Image Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.14

Table S16128.  Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SBNO1 MUTATED 1 9 1 1 3
SBNO1 WILD-TYPE 50 67 60 70 92

Figure S4104.  Get High-res Image Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00061 (Fisher's exact test), Q value = 0.018

Table S16129.  Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SBNO1 MUTATED 1 5 0 4 0 2 1 1 1
SBNO1 WILD-TYPE 68 43 39 12 53 18 20 37 49

Figure S4105.  Get High-res Image Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.02

Table S16130.  Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SBNO1 MUTATED 0 0 0 0 4 0
SBNO1 WILD-TYPE 13 16 14 11 7 9

Figure S4106.  Get High-res Image Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S16131.  Gene #1595: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SBNO1 MUTATED 0 0 0 1 0 1 2 0 0
SBNO1 WILD-TYPE 11 7 7 8 8 6 9 9 5
'MR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.57

Table S16132.  Gene #1596: 'MR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MR1 MUTATED 0 1 4
MR1 WILD-TYPE 42 172 143
'MR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 0.29

Table S16133.  Gene #1596: 'MR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MR1 MUTATED 3 1 0
MR1 WILD-TYPE 59 72 75
'MR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S16134.  Gene #1596: 'MR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MR1 MUTATED 1 1 2
MR1 WILD-TYPE 69 119 98
'MR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 0.99

Table S16135.  Gene #1596: 'MR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MR1 MUTATED 1 1 0 0 0 1 0 0 1
MR1 WILD-TYPE 40 25 30 29 39 68 20 14 21
'MR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.093 (Fisher's exact test), Q value = 0.33

Table S16136.  Gene #1596: 'MR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MR1 MUTATED 0 0 3 2
MR1 WILD-TYPE 100 72 69 119
'MR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S16137.  Gene #1596: 'MR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MR1 MUTATED 2 0 1 1 1
MR1 WILD-TYPE 57 75 73 118 37
'MR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.85

Table S16138.  Gene #1596: 'MR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MR1 MUTATED 0 1 2 0 2
MR1 WILD-TYPE 51 75 59 71 93
'MR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S16139.  Gene #1596: 'MR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MR1 MUTATED 1 2 0 0 0 0 0 1 1
MR1 WILD-TYPE 68 46 39 16 53 20 21 37 49
'OR5R1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.55

Table S16140.  Gene #1597: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OR5R1 MUTATED 3 0 1 0 0
OR5R1 WILD-TYPE 29 18 45 27 23
'OR5R1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S16141.  Gene #1597: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OR5R1 MUTATED 2 0 2
OR5R1 WILD-TYPE 41 67 34
'OR5R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.93

Table S16142.  Gene #1597: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR5R1 MUTATED 2 5 7
OR5R1 WILD-TYPE 40 168 140
'OR5R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S16143.  Gene #1597: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR5R1 MUTATED 3 4 3
OR5R1 WILD-TYPE 59 69 72
'OR5R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S16144.  Gene #1597: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR5R1 MUTATED 1 3 6
OR5R1 WILD-TYPE 69 117 94
'OR5R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S16145.  Gene #1597: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR5R1 MUTATED 2 1 0 1 2 3 1 0 0
OR5R1 WILD-TYPE 39 25 30 28 37 66 19 14 22
'OR5R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.98

Table S16146.  Gene #1597: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR5R1 MUTATED 5 3 1 5
OR5R1 WILD-TYPE 95 69 71 116
'OR5R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S16147.  Gene #1597: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR5R1 MUTATED 2 4 2 4 2
OR5R1 WILD-TYPE 57 71 72 115 36
'OR5R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16148.  Gene #1597: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR5R1 MUTATED 2 3 2 3 4
OR5R1 WILD-TYPE 49 73 59 68 91
'OR5R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S16149.  Gene #1597: 'OR5R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR5R1 MUTATED 2 2 2 1 3 0 0 1 3
OR5R1 WILD-TYPE 67 46 37 15 50 20 21 37 47
'RIMS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00411 (Fisher's exact test), Q value = 0.058

Table S16150.  Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RIMS2 MUTATED 6 0 0 4 1
RIMS2 WILD-TYPE 26 18 46 23 22

Figure S4107.  Get High-res Image Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RIMS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S16151.  Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RIMS2 MUTATED 6 3 2
RIMS2 WILD-TYPE 37 64 34
'RIMS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00081 (Fisher's exact test), Q value = 0.022

Table S16152.  Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RIMS2 MUTATED 3 8 25
RIMS2 WILD-TYPE 39 165 122

Figure S4108.  Get High-res Image Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RIMS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.53

Table S16153.  Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RIMS2 MUTATED 10 5 10
RIMS2 WILD-TYPE 52 68 65
'RIMS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S16154.  Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RIMS2 MUTATED 4 9 14
RIMS2 WILD-TYPE 66 111 86
'RIMS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00255 (Fisher's exact test), Q value = 0.043

Table S16155.  Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RIMS2 MUTATED 2 2 2 3 0 12 0 5 1
RIMS2 WILD-TYPE 39 24 28 26 39 57 20 9 21

Figure S4109.  Get High-res Image Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'RIMS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 0.22

Table S16156.  Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RIMS2 MUTATED 7 14 6 9
RIMS2 WILD-TYPE 93 58 66 112

Figure S4110.  Get High-res Image Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RIMS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 0.17

Table S16157.  Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RIMS2 MUTATED 2 10 13 7 4
RIMS2 WILD-TYPE 57 65 61 112 34

Figure S4111.  Get High-res Image Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RIMS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.053 (Fisher's exact test), Q value = 0.25

Table S16158.  Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RIMS2 MUTATED 4 15 5 4 7
RIMS2 WILD-TYPE 47 61 56 67 88
'RIMS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S16159.  Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RIMS2 MUTATED 6 4 5 5 5 2 2 3 3
RIMS2 WILD-TYPE 63 44 34 11 48 18 19 35 47
'RIMS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S16160.  Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RIMS2 MUTATED 1 1 3 0 3 0
RIMS2 WILD-TYPE 12 15 11 11 8 9
'RIMS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S16161.  Gene #1598: 'RIMS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RIMS2 MUTATED 1 0 0 2 2 1 1 1 0
RIMS2 WILD-TYPE 10 7 7 7 6 6 10 8 5
'ZNF660 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00771 (Fisher's exact test), Q value = 0.082

Table S16162.  Gene #1599: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF660 MUTATED 0 0 7
ZNF660 WILD-TYPE 42 173 140

Figure S4112.  Get High-res Image Gene #1599: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF660 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S16163.  Gene #1599: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF660 MUTATED 2 0 4
ZNF660 WILD-TYPE 60 73 71
'ZNF660 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S16164.  Gene #1599: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF660 MUTATED 0 3 4
ZNF660 WILD-TYPE 70 117 96
'ZNF660 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.77

Table S16165.  Gene #1599: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF660 MUTATED 0 1 0 2 0 3 0 0 1
ZNF660 WILD-TYPE 41 25 30 27 39 66 20 14 21
'ZNF660 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S16166.  Gene #1599: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF660 MUTATED 0 2 3 2
ZNF660 WILD-TYPE 100 70 69 119
'ZNF660 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S16167.  Gene #1599: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF660 MUTATED 0 0 5 1 1
ZNF660 WILD-TYPE 59 75 69 118 37

Figure S4113.  Get High-res Image Gene #1599: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF660 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.55

Table S16168.  Gene #1599: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF660 MUTATED 0 4 0 1 2
ZNF660 WILD-TYPE 51 72 61 70 93
'ZNF660 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S16169.  Gene #1599: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF660 MUTATED 0 3 0 1 1 0 0 1 1
ZNF660 WILD-TYPE 69 45 39 15 52 20 21 37 49
'ZNF660 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S16170.  Gene #1599: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF660 MUTATED 0 0 1 0 2 0
ZNF660 WILD-TYPE 13 16 13 11 9 9
'ZNF660 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S16171.  Gene #1599: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF660 MUTATED 0 0 0 0 1 0 2 0 0
ZNF660 WILD-TYPE 11 7 7 9 7 7 9 9 5
'GSS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.48

Table S16172.  Gene #1600: 'GSS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GSS MUTATED 1 0 0 2 0
GSS WILD-TYPE 31 18 46 25 23
'GSS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S16173.  Gene #1600: 'GSS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GSS MUTATED 2 1 0
GSS WILD-TYPE 41 66 36
'GSS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S16174.  Gene #1600: 'GSS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GSS MUTATED 0 2 6
GSS WILD-TYPE 42 171 141
'GSS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S16175.  Gene #1600: 'GSS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GSS MUTATED 2 0 2
GSS WILD-TYPE 60 73 73
'GSS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.87

Table S16176.  Gene #1600: 'GSS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GSS MUTATED 1 2 4
GSS WILD-TYPE 69 118 96
'GSS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S16177.  Gene #1600: 'GSS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GSS MUTATED 0 0 2 1 0 4 0 0 0
GSS WILD-TYPE 41 26 28 28 39 65 20 14 22
'GSS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S16178.  Gene #1600: 'GSS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GSS MUTATED 1 2 1 4
GSS WILD-TYPE 99 70 71 117
'GSS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.97

Table S16179.  Gene #1600: 'GSS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GSS MUTATED 1 1 2 2 2
GSS WILD-TYPE 58 74 72 117 36
'GSS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S16180.  Gene #1600: 'GSS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GSS MUTATED 1 2 1 0 2
GSS WILD-TYPE 50 74 60 71 93
'GSS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S16181.  Gene #1600: 'GSS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GSS MUTATED 2 0 1 1 0 1 0 1 0
GSS WILD-TYPE 67 48 38 15 53 19 21 37 50
'SLC38A9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S16182.  Gene #1601: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC38A9 MUTATED 2 0 0 1 0
SLC38A9 WILD-TYPE 30 18 46 26 23
'SLC38A9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S16183.  Gene #1601: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC38A9 MUTATED 2 0 1
SLC38A9 WILD-TYPE 41 67 35
'SLC38A9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00042 (Fisher's exact test), Q value = 0.014

Table S16184.  Gene #1601: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC38A9 MUTATED 0 0 10
SLC38A9 WILD-TYPE 42 173 137

Figure S4114.  Get High-res Image Gene #1601: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC38A9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0348 (Fisher's exact test), Q value = 0.2

Table S16185.  Gene #1601: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC38A9 MUTATED 5 0 3
SLC38A9 WILD-TYPE 57 73 72

Figure S4115.  Get High-res Image Gene #1601: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SLC38A9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0678 (Fisher's exact test), Q value = 0.28

Table S16186.  Gene #1601: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC38A9 MUTATED 0 3 6
SLC38A9 WILD-TYPE 70 117 94
'SLC38A9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S16187.  Gene #1601: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC38A9 MUTATED 0 1 0 1 1 5 1 0 0
SLC38A9 WILD-TYPE 41 25 30 28 38 64 19 14 22
'SLC38A9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 0.2

Table S16188.  Gene #1601: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC38A9 MUTATED 0 5 3 3
SLC38A9 WILD-TYPE 100 67 69 118

Figure S4116.  Get High-res Image Gene #1601: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC38A9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0325 (Fisher's exact test), Q value = 0.19

Table S16189.  Gene #1601: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC38A9 MUTATED 0 1 6 2 2
SLC38A9 WILD-TYPE 59 74 68 117 36

Figure S4117.  Get High-res Image Gene #1601: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC38A9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.55

Table S16190.  Gene #1601: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC38A9 MUTATED 0 5 1 1 4
SLC38A9 WILD-TYPE 51 71 60 70 91
'SLC38A9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S16191.  Gene #1601: 'SLC38A9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC38A9 MUTATED 1 3 0 2 1 0 0 3 1
SLC38A9 WILD-TYPE 68 45 39 14 52 20 21 35 49
'VPS72 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0063 (Fisher's exact test), Q value = 0.074

Table S16192.  Gene #1602: 'VPS72 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
VPS72 MUTATED 1 0 7
VPS72 WILD-TYPE 41 173 140

Figure S4118.  Get High-res Image Gene #1602: 'VPS72 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VPS72 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S16193.  Gene #1602: 'VPS72 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
VPS72 MUTATED 3 0 4
VPS72 WILD-TYPE 59 73 71
'VPS72 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S16194.  Gene #1602: 'VPS72 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
VPS72 MUTATED 2 4 2
VPS72 WILD-TYPE 68 116 98
'VPS72 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 0.93

Table S16195.  Gene #1602: 'VPS72 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
VPS72 MUTATED 1 0 0 2 2 2 0 1 0
VPS72 WILD-TYPE 40 26 30 27 37 67 20 13 22
'VPS72 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.14

Table S16196.  Gene #1602: 'VPS72 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
VPS72 MUTATED 0 4 3 1
VPS72 WILD-TYPE 100 68 69 120

Figure S4119.  Get High-res Image Gene #1602: 'VPS72 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'VPS72 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00172 (Fisher's exact test), Q value = 0.034

Table S16197.  Gene #1602: 'VPS72 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
VPS72 MUTATED 1 0 6 0 1
VPS72 WILD-TYPE 58 75 68 119 37

Figure S4120.  Get High-res Image Gene #1602: 'VPS72 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'VPS72 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S16198.  Gene #1602: 'VPS72 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
VPS72 MUTATED 0 6 1 0 1
VPS72 WILD-TYPE 51 70 60 71 94

Figure S4121.  Get High-res Image Gene #1602: 'VPS72 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'VPS72 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S16199.  Gene #1602: 'VPS72 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
VPS72 MUTATED 1 2 0 2 2 0 0 1 0
VPS72 WILD-TYPE 68 46 39 14 51 20 21 37 50
'LCK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.21

Table S16200.  Gene #1603: 'LCK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LCK MUTATED 0 1 7
LCK WILD-TYPE 42 172 140

Figure S4122.  Get High-res Image Gene #1603: 'LCK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LCK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.98

Table S16201.  Gene #1603: 'LCK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LCK MUTATED 2 1 3
LCK WILD-TYPE 60 72 72
'LCK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S16202.  Gene #1603: 'LCK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LCK MUTATED 0 4 3
LCK WILD-TYPE 70 116 97
'LCK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S16203.  Gene #1603: 'LCK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LCK MUTATED 0 1 1 1 0 3 1 0 0
LCK WILD-TYPE 41 25 29 28 39 66 19 14 22
'LCK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S16204.  Gene #1603: 'LCK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LCK MUTATED 2 2 2 2
LCK WILD-TYPE 98 70 70 119
'LCK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S16205.  Gene #1603: 'LCK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LCK MUTATED 1 1 4 1 1
LCK WILD-TYPE 58 74 70 118 37
'LCK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S16206.  Gene #1603: 'LCK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LCK MUTATED 0 3 1 3 1
LCK WILD-TYPE 51 73 60 68 94
'LCK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 0.96

Table S16207.  Gene #1603: 'LCK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LCK MUTATED 4 1 0 0 2 0 0 1 0
LCK WILD-TYPE 65 47 39 16 51 20 21 37 50
'LCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S16208.  Gene #1603: 'LCK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LCK MUTATED 1 0 1 1 1 0
LCK WILD-TYPE 12 16 13 10 10 9
'LCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S16209.  Gene #1603: 'LCK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LCK MUTATED 0 0 0 0 0 1 2 1 0
LCK WILD-TYPE 11 7 7 9 8 6 9 8 5
'AGTPBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 0.2

Table S16210.  Gene #1604: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AGTPBP1 MUTATED 0 5 12
AGTPBP1 WILD-TYPE 42 168 135

Figure S4123.  Get High-res Image Gene #1604: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AGTPBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S16211.  Gene #1604: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AGTPBP1 MUTATED 7 2 5
AGTPBP1 WILD-TYPE 55 71 70
'AGTPBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S16212.  Gene #1604: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AGTPBP1 MUTATED 4 6 6
AGTPBP1 WILD-TYPE 66 114 94
'AGTPBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0634 (Fisher's exact test), Q value = 0.27

Table S16213.  Gene #1604: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AGTPBP1 MUTATED 4 1 2 2 0 2 4 1 0
AGTPBP1 WILD-TYPE 37 25 28 27 39 67 16 13 22
'AGTPBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S16214.  Gene #1604: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AGTPBP1 MUTATED 4 5 5 3
AGTPBP1 WILD-TYPE 96 67 67 118
'AGTPBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.5

Table S16215.  Gene #1604: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AGTPBP1 MUTATED 4 3 6 2 2
AGTPBP1 WILD-TYPE 55 72 68 117 36
'AGTPBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S16216.  Gene #1604: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AGTPBP1 MUTATED 2 5 5 1 4
AGTPBP1 WILD-TYPE 49 71 56 70 91
'AGTPBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.046 (Fisher's exact test), Q value = 0.23

Table S16217.  Gene #1604: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AGTPBP1 MUTATED 0 5 1 2 5 0 0 2 2
AGTPBP1 WILD-TYPE 69 43 38 14 48 20 21 36 48

Figure S4124.  Get High-res Image Gene #1604: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AGTPBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S16218.  Gene #1604: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AGTPBP1 MUTATED 0 1 1 1 2 0
AGTPBP1 WILD-TYPE 13 15 13 10 9 9
'AGTPBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.8

Table S16219.  Gene #1604: 'AGTPBP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AGTPBP1 MUTATED 0 0 0 1 2 1 1 0 0
AGTPBP1 WILD-TYPE 11 7 7 8 6 6 10 9 5
'GRIN2A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S16220.  Gene #1605: 'GRIN2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GRIN2A MUTATED 6 1 3 2 1
GRIN2A WILD-TYPE 26 17 43 25 22
'GRIN2A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S16221.  Gene #1605: 'GRIN2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GRIN2A MUTATED 7 4 2
GRIN2A WILD-TYPE 36 63 34
'GRIN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 0.16

Table S16222.  Gene #1605: 'GRIN2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GRIN2A MUTATED 3 13 25
GRIN2A WILD-TYPE 39 160 122

Figure S4125.  Get High-res Image Gene #1605: 'GRIN2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GRIN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S16223.  Gene #1605: 'GRIN2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GRIN2A MUTATED 8 7 11
GRIN2A WILD-TYPE 54 66 64
'GRIN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0496 (Fisher's exact test), Q value = 0.24

Table S16224.  Gene #1605: 'GRIN2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GRIN2A MUTATED 3 18 15
GRIN2A WILD-TYPE 67 102 85

Figure S4126.  Get High-res Image Gene #1605: 'GRIN2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GRIN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0966 (Fisher's exact test), Q value = 0.34

Table S16225.  Gene #1605: 'GRIN2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GRIN2A MUTATED 2 5 3 2 5 13 0 4 2
GRIN2A WILD-TYPE 39 21 27 27 34 56 20 10 20
'GRIN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S16226.  Gene #1605: 'GRIN2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GRIN2A MUTATED 12 9 8 12
GRIN2A WILD-TYPE 88 63 64 109
'GRIN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.63

Table S16227.  Gene #1605: 'GRIN2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GRIN2A MUTATED 6 8 11 9 7
GRIN2A WILD-TYPE 53 67 63 110 31
'GRIN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S16228.  Gene #1605: 'GRIN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GRIN2A MUTATED 5 11 9 3 10
GRIN2A WILD-TYPE 46 65 52 68 85
'GRIN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0319 (Fisher's exact test), Q value = 0.19

Table S16229.  Gene #1605: 'GRIN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GRIN2A MUTATED 6 8 4 5 1 3 4 3 4
GRIN2A WILD-TYPE 63 40 35 11 52 17 17 35 46

Figure S4127.  Get High-res Image Gene #1605: 'GRIN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GRIN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S16230.  Gene #1605: 'GRIN2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GRIN2A MUTATED 0 1 1 0 2 0
GRIN2A WILD-TYPE 13 15 13 11 9 9
'GRIN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S16231.  Gene #1605: 'GRIN2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GRIN2A MUTATED 1 0 0 1 0 0 2 0 0
GRIN2A WILD-TYPE 10 7 7 8 8 7 9 9 5
'FGD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S16232.  Gene #1606: 'FGD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FGD1 MUTATED 2 0 1 1 1
FGD1 WILD-TYPE 30 18 45 26 22
'FGD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S16233.  Gene #1606: 'FGD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FGD1 MUTATED 2 3 0
FGD1 WILD-TYPE 41 64 36
'FGD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.2

Table S16234.  Gene #1606: 'FGD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FGD1 MUTATED 3 3 10
FGD1 WILD-TYPE 39 170 137

Figure S4128.  Get High-res Image Gene #1606: 'FGD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FGD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.33

Table S16235.  Gene #1606: 'FGD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FGD1 MUTATED 3 1 7
FGD1 WILD-TYPE 59 72 68
'FGD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S16236.  Gene #1606: 'FGD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FGD1 MUTATED 5 3 6
FGD1 WILD-TYPE 65 117 94
'FGD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S16237.  Gene #1606: 'FGD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FGD1 MUTATED 2 2 1 0 3 5 1 0 0
FGD1 WILD-TYPE 39 24 29 29 36 64 19 14 22
'FGD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S16238.  Gene #1606: 'FGD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FGD1 MUTATED 1 5 5 5
FGD1 WILD-TYPE 99 67 67 116
'FGD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00068 (Fisher's exact test), Q value = 0.019

Table S16239.  Gene #1606: 'FGD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FGD1 MUTATED 1 0 10 3 2
FGD1 WILD-TYPE 58 75 64 116 36

Figure S4129.  Get High-res Image Gene #1606: 'FGD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FGD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00906 (Fisher's exact test), Q value = 0.089

Table S16240.  Gene #1606: 'FGD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FGD1 MUTATED 0 9 1 3 2
FGD1 WILD-TYPE 51 67 60 68 93

Figure S4130.  Get High-res Image Gene #1606: 'FGD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FGD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0834 (Fisher's exact test), Q value = 0.31

Table S16241.  Gene #1606: 'FGD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FGD1 MUTATED 2 5 1 3 1 0 0 2 1
FGD1 WILD-TYPE 67 43 38 13 52 20 21 36 49
'FGD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.11

Table S16242.  Gene #1606: 'FGD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FGD1 MUTATED 0 1 0 1 4 0
FGD1 WILD-TYPE 13 15 14 10 7 9

Figure S4131.  Get High-res Image Gene #1606: 'FGD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FGD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S16243.  Gene #1606: 'FGD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FGD1 MUTATED 0 0 1 1 1 0 3 0 0
FGD1 WILD-TYPE 11 7 6 8 7 7 8 9 5
'ZNF286A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00748 (Fisher's exact test), Q value = 0.081

Table S16244.  Gene #1607: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF286A MUTATED 0 0 7
ZNF286A WILD-TYPE 42 173 140

Figure S4132.  Get High-res Image Gene #1607: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF286A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.21

Table S16245.  Gene #1607: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF286A MUTATED 4 0 1
ZNF286A WILD-TYPE 58 73 74

Figure S4133.  Get High-res Image Gene #1607: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZNF286A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S16246.  Gene #1607: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF286A MUTATED 2 1 3
ZNF286A WILD-TYPE 68 119 97
'ZNF286A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.9

Table S16247.  Gene #1607: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF286A MUTATED 2 0 1 0 0 2 0 1 0
ZNF286A WILD-TYPE 39 26 29 29 39 67 20 13 22
'ZNF286A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S16248.  Gene #1607: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF286A MUTATED 0 2 3 2
ZNF286A WILD-TYPE 100 70 69 119
'ZNF286A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S16249.  Gene #1607: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF286A MUTATED 1 1 3 2 0
ZNF286A WILD-TYPE 58 74 71 117 38
'ZNF286A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S16250.  Gene #1607: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF286A MUTATED 0 2 2 1 2
ZNF286A WILD-TYPE 51 74 59 70 93
'ZNF286A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S16251.  Gene #1607: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF286A MUTATED 1 3 0 0 1 1 0 0 1
ZNF286A WILD-TYPE 68 45 39 16 52 19 21 38 49
'ZNF286A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S16252.  Gene #1607: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF286A MUTATED 0 1 1 0 1 0
ZNF286A WILD-TYPE 13 15 13 11 10 9
'ZNF286A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S16253.  Gene #1607: 'ZNF286A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF286A MUTATED 0 0 0 0 1 0 2 0 0
ZNF286A WILD-TYPE 11 7 7 9 7 7 9 9 5
'BRCA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00803 (Fisher's exact test), Q value = 0.084

Table S16254.  Gene #1608: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BRCA1 MUTATED 5 0 0 1 0
BRCA1 WILD-TYPE 27 18 46 26 23

Figure S4134.  Get High-res Image Gene #1608: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BRCA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S16255.  Gene #1608: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BRCA1 MUTATED 4 1 1
BRCA1 WILD-TYPE 39 66 35
'BRCA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0564 (Fisher's exact test), Q value = 0.25

Table S16256.  Gene #1608: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BRCA1 MUTATED 3 7 16
BRCA1 WILD-TYPE 39 166 131
'BRCA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S16257.  Gene #1608: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BRCA1 MUTATED 5 6 10
BRCA1 WILD-TYPE 57 67 65
'BRCA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S16258.  Gene #1608: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BRCA1 MUTATED 3 11 7
BRCA1 WILD-TYPE 67 109 93
'BRCA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.996 (Fisher's exact test), Q value = 1

Table S16259.  Gene #1608: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BRCA1 MUTATED 3 2 2 2 3 5 2 0 2
BRCA1 WILD-TYPE 38 24 28 27 36 64 18 14 20
'BRCA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S16260.  Gene #1608: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BRCA1 MUTATED 6 8 5 7
BRCA1 WILD-TYPE 94 64 67 114
'BRCA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0426 (Fisher's exact test), Q value = 0.22

Table S16261.  Gene #1608: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BRCA1 MUTATED 4 5 10 3 4
BRCA1 WILD-TYPE 55 70 64 116 34

Figure S4135.  Get High-res Image Gene #1608: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BRCA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S16262.  Gene #1608: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BRCA1 MUTATED 7 7 3 2 6
BRCA1 WILD-TYPE 44 69 58 69 89
'BRCA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 5e-04 (Fisher's exact test), Q value = 0.016

Table S16263.  Gene #1608: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BRCA1 MUTATED 4 2 0 6 7 1 0 4 1
BRCA1 WILD-TYPE 65 46 39 10 46 19 21 34 49

Figure S4136.  Get High-res Image Gene #1608: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BRCA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.2

Table S16264.  Gene #1608: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BRCA1 MUTATED 1 0 0 0 3 1
BRCA1 WILD-TYPE 12 16 14 11 8 8

Figure S4137.  Get High-res Image Gene #1608: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'BRCA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S16265.  Gene #1608: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BRCA1 MUTATED 1 0 0 2 1 0 0 0 1
BRCA1 WILD-TYPE 10 7 7 7 7 7 11 9 4
'AOX1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.18

Table S16266.  Gene #1609: 'AOX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AOX1 MUTATED 4 0 0 1 0
AOX1 WILD-TYPE 28 18 46 26 23

Figure S4138.  Get High-res Image Gene #1609: 'AOX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AOX1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00258 (Fisher's exact test), Q value = 0.043

Table S16267.  Gene #1609: 'AOX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AOX1 MUTATED 5 0 0
AOX1 WILD-TYPE 38 67 36

Figure S4139.  Get High-res Image Gene #1609: 'AOX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'AOX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S16268.  Gene #1609: 'AOX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AOX1 MUTATED 0 2 10
AOX1 WILD-TYPE 42 171 137

Figure S4140.  Get High-res Image Gene #1609: 'AOX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AOX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16269.  Gene #1609: 'AOX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AOX1 MUTATED 2 2 3
AOX1 WILD-TYPE 60 71 72
'AOX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S16270.  Gene #1609: 'AOX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AOX1 MUTATED 0 4 5
AOX1 WILD-TYPE 70 116 95
'AOX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S16271.  Gene #1609: 'AOX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AOX1 MUTATED 1 1 0 1 2 3 1 0 0
AOX1 WILD-TYPE 40 25 30 28 37 66 19 14 22
'AOX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S16272.  Gene #1609: 'AOX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AOX1 MUTATED 2 2 3 5
AOX1 WILD-TYPE 98 70 69 116
'AOX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00077 (Fisher's exact test), Q value = 0.021

Table S16273.  Gene #1609: 'AOX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AOX1 MUTATED 2 1 4 0 5
AOX1 WILD-TYPE 57 74 70 119 33

Figure S4141.  Get High-res Image Gene #1609: 'AOX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AOX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.88

Table S16274.  Gene #1609: 'AOX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AOX1 MUTATED 1 4 1 1 5
AOX1 WILD-TYPE 50 72 60 70 90
'AOX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S16275.  Gene #1609: 'AOX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AOX1 MUTATED 2 3 0 1 1 0 1 4 0
AOX1 WILD-TYPE 67 45 39 15 52 20 20 34 50
'AOX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S16276.  Gene #1609: 'AOX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AOX1 MUTATED 1 0 0 0 2 0
AOX1 WILD-TYPE 12 16 14 11 9 9
'AOX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S16277.  Gene #1609: 'AOX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AOX1 MUTATED 0 0 0 2 0 0 1 0 0
AOX1 WILD-TYPE 11 7 7 7 8 7 10 9 5
'ZNF323 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S16278.  Gene #1610: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF323 MUTATED 1 2 7
ZNF323 WILD-TYPE 41 171 140
'ZNF323 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S16279.  Gene #1610: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF323 MUTATED 2 2 4
ZNF323 WILD-TYPE 60 71 71
'ZNF323 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S16280.  Gene #1610: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF323 MUTATED 1 4 3
ZNF323 WILD-TYPE 69 116 97
'ZNF323 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S16281.  Gene #1610: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF323 MUTATED 1 0 2 0 1 3 0 0 1
ZNF323 WILD-TYPE 40 26 28 29 38 66 20 14 21
'ZNF323 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.83

Table S16282.  Gene #1610: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF323 MUTATED 1 3 3 3
ZNF323 WILD-TYPE 99 69 69 118
'ZNF323 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S16283.  Gene #1610: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF323 MUTATED 1 1 5 2 1
ZNF323 WILD-TYPE 58 74 69 117 37
'ZNF323 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S16284.  Gene #1610: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF323 MUTATED 1 5 0 0 4
ZNF323 WILD-TYPE 50 71 61 71 91
'ZNF323 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.56

Table S16285.  Gene #1610: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF323 MUTATED 1 1 1 2 1 2 0 1 1
ZNF323 WILD-TYPE 68 47 38 14 52 18 21 37 49
'ZNF323 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S16286.  Gene #1610: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF323 MUTATED 1 0 1 0 1 0
ZNF323 WILD-TYPE 12 16 13 11 10 9
'ZNF323 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S16287.  Gene #1610: 'ZNF323 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF323 MUTATED 0 0 0 0 0 0 2 1 0
ZNF323 WILD-TYPE 11 7 7 9 8 7 9 8 5
'ESR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.16

Table S16288.  Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ESR1 MUTATED 5 0 0 2 2
ESR1 WILD-TYPE 27 18 46 25 21

Figure S4142.  Get High-res Image Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ESR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.15

Table S16289.  Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ESR1 MUTATED 6 1 2
ESR1 WILD-TYPE 37 66 34

Figure S4143.  Get High-res Image Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ESR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.012

Table S16290.  Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ESR1 MUTATED 0 3 16
ESR1 WILD-TYPE 42 170 131

Figure S4144.  Get High-res Image Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ESR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S16291.  Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ESR1 MUTATED 4 1 4
ESR1 WILD-TYPE 58 72 71
'ESR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S16292.  Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ESR1 MUTATED 2 6 8
ESR1 WILD-TYPE 68 114 92
'ESR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S16293.  Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ESR1 MUTATED 0 0 2 3 3 7 1 0 0
ESR1 WILD-TYPE 41 26 28 26 36 62 19 14 22
'ESR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 0.27

Table S16294.  Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ESR1 MUTATED 1 6 3 9
ESR1 WILD-TYPE 99 66 69 112
'ESR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S16295.  Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ESR1 MUTATED 0 1 8 3 7
ESR1 WILD-TYPE 59 74 66 116 31

Figure S4145.  Get High-res Image Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ESR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S16296.  Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ESR1 MUTATED 0 7 1 1 8
ESR1 WILD-TYPE 51 69 60 70 87

Figure S4146.  Get High-res Image Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ESR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S16297.  Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ESR1 MUTATED 2 3 1 2 0 1 1 5 2
ESR1 WILD-TYPE 67 45 38 14 53 19 20 33 48
'ESR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S16298.  Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ESR1 MUTATED 0 1 0 0 2 0
ESR1 WILD-TYPE 13 15 14 11 9 9
'ESR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S16299.  Gene #1611: 'ESR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ESR1 MUTATED 1 0 0 0 0 1 1 0 0
ESR1 WILD-TYPE 10 7 7 9 8 6 10 9 5
'LDLRAD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.19

Table S16300.  Gene #1612: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LDLRAD3 MUTATED 0 0 5
LDLRAD3 WILD-TYPE 42 173 142

Figure S4147.  Get High-res Image Gene #1612: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LDLRAD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S16301.  Gene #1612: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LDLRAD3 MUTATED 1 0 2
LDLRAD3 WILD-TYPE 61 73 73
'LDLRAD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16302.  Gene #1612: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LDLRAD3 MUTATED 1 2 1
LDLRAD3 WILD-TYPE 69 118 99
'LDLRAD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.94

Table S16303.  Gene #1612: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LDLRAD3 MUTATED 0 0 0 1 2 1 0 0 0
LDLRAD3 WILD-TYPE 41 26 30 28 37 68 20 14 22
'LDLRAD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0918 (Fisher's exact test), Q value = 0.33

Table S16304.  Gene #1612: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LDLRAD3 MUTATED 0 3 0 2
LDLRAD3 WILD-TYPE 100 69 72 119
'LDLRAD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0465 (Fisher's exact test), Q value = 0.23

Table S16305.  Gene #1612: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LDLRAD3 MUTATED 0 1 2 0 2
LDLRAD3 WILD-TYPE 59 74 72 119 36

Figure S4148.  Get High-res Image Gene #1612: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LDLRAD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S16306.  Gene #1612: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LDLRAD3 MUTATED 0 1 0 0 4
LDLRAD3 WILD-TYPE 51 75 61 71 91
'LDLRAD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0527 (Fisher's exact test), Q value = 0.25

Table S16307.  Gene #1612: 'LDLRAD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LDLRAD3 MUTATED 0 0 0 1 0 0 1 2 1
LDLRAD3 WILD-TYPE 69 48 39 15 53 20 20 36 49
'BAZ1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.18

Table S16308.  Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BAZ1B MUTATED 4 0 0 1 0
BAZ1B WILD-TYPE 28 18 46 26 23

Figure S4149.  Get High-res Image Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'BAZ1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0246 (Fisher's exact test), Q value = 0.16

Table S16309.  Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BAZ1B MUTATED 4 0 1
BAZ1B WILD-TYPE 39 67 35

Figure S4150.  Get High-res Image Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'BAZ1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S16310.  Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BAZ1B MUTATED 1 5 15
BAZ1B WILD-TYPE 41 168 132

Figure S4151.  Get High-res Image Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BAZ1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S16311.  Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BAZ1B MUTATED 5 4 7
BAZ1B WILD-TYPE 57 69 68
'BAZ1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.098

Table S16312.  Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BAZ1B MUTATED 2 4 13
BAZ1B WILD-TYPE 68 116 87

Figure S4152.  Get High-res Image Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'BAZ1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S16313.  Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BAZ1B MUTATED 4 0 0 3 2 8 1 0 1
BAZ1B WILD-TYPE 37 26 30 26 37 61 19 14 21
'BAZ1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00811 (Fisher's exact test), Q value = 0.084

Table S16314.  Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BAZ1B MUTATED 1 7 8 5
BAZ1B WILD-TYPE 99 65 64 116

Figure S4153.  Get High-res Image Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BAZ1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00121 (Fisher's exact test), Q value = 0.028

Table S16315.  Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BAZ1B MUTATED 3 1 12 3 2
BAZ1B WILD-TYPE 56 74 62 116 36

Figure S4154.  Get High-res Image Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BAZ1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00864 (Fisher's exact test), Q value = 0.087

Table S16316.  Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BAZ1B MUTATED 1 10 4 3 1
BAZ1B WILD-TYPE 50 66 57 68 94

Figure S4155.  Get High-res Image Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BAZ1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S16317.  Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BAZ1B MUTATED 3 8 0 5 1 0 0 2 0
BAZ1B WILD-TYPE 66 40 39 11 52 20 21 36 50

Figure S4156.  Get High-res Image Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BAZ1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.19

Table S16318.  Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BAZ1B MUTATED 0 1 0 0 3 0
BAZ1B WILD-TYPE 13 15 14 11 8 9

Figure S4157.  Get High-res Image Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'BAZ1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S16319.  Gene #1613: 'BAZ1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BAZ1B MUTATED 0 0 0 1 0 0 3 0 0
BAZ1B WILD-TYPE 11 7 7 8 8 7 8 9 5
'SLAMF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S16320.  Gene #1614: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLAMF9 MUTATED 1 1 4
SLAMF9 WILD-TYPE 41 172 143
'SLAMF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.73

Table S16321.  Gene #1614: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLAMF9 MUTATED 2 2 0
SLAMF9 WILD-TYPE 60 71 75
'SLAMF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S16322.  Gene #1614: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLAMF9 MUTATED 0 2 3
SLAMF9 WILD-TYPE 70 118 97
'SLAMF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S16323.  Gene #1614: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLAMF9 MUTATED 1 0 0 0 0 2 0 1 1
SLAMF9 WILD-TYPE 40 26 30 29 39 67 20 13 21
'SLAMF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16324.  Gene #1614: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLAMF9 MUTATED 2 1 1 2
SLAMF9 WILD-TYPE 98 71 71 119
'SLAMF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0701 (Fisher's exact test), Q value = 0.29

Table S16325.  Gene #1614: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLAMF9 MUTATED 2 1 1 0 2
SLAMF9 WILD-TYPE 57 74 73 119 36
'SLAMF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S16326.  Gene #1614: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLAMF9 MUTATED 0 1 2 1 2
SLAMF9 WILD-TYPE 51 75 59 70 93
'SLAMF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S16327.  Gene #1614: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLAMF9 MUTATED 1 2 0 1 0 0 1 1 0
SLAMF9 WILD-TYPE 68 46 39 15 53 20 20 37 50
'C6ORF203 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0627 (Fisher's exact test), Q value = 0.27

Table S16328.  Gene #1615: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C6ORF203 MUTATED 0 0 4
C6ORF203 WILD-TYPE 42 173 143
'C6ORF203 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S16329.  Gene #1615: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C6ORF203 MUTATED 0 2 1
C6ORF203 WILD-TYPE 70 118 99
'C6ORF203 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S16330.  Gene #1615: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C6ORF203 MUTATED 0 0 1 0 1 1 0 0 0
C6ORF203 WILD-TYPE 41 26 29 29 38 68 20 14 22
'C6ORF203 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.56

Table S16331.  Gene #1615: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C6ORF203 MUTATED 0 2 0 2
C6ORF203 WILD-TYPE 100 70 72 119
'C6ORF203 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.64

Table S16332.  Gene #1615: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C6ORF203 MUTATED 0 0 2 1 1
C6ORF203 WILD-TYPE 59 75 72 118 37
'C6ORF203 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.82

Table S16333.  Gene #1615: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C6ORF203 MUTATED 0 2 0 0 2
C6ORF203 WILD-TYPE 51 74 61 71 93
'C6ORF203 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00231 (Fisher's exact test), Q value = 0.041

Table S16334.  Gene #1615: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C6ORF203 MUTATED 0 0 0 2 0 1 0 1 0
C6ORF203 WILD-TYPE 69 48 39 14 53 19 21 37 50

Figure S4158.  Get High-res Image Gene #1615: 'C6ORF203 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CCPG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.52

Table S16335.  Gene #1616: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CCPG1 MUTATED 2 0 0 2 1
CCPG1 WILD-TYPE 30 18 46 25 22
'CCPG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S16336.  Gene #1616: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CCPG1 MUTATED 3 1 1
CCPG1 WILD-TYPE 40 66 35
'CCPG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00319 (Fisher's exact test), Q value = 0.049

Table S16337.  Gene #1616: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCPG1 MUTATED 0 1 10
CCPG1 WILD-TYPE 42 172 137

Figure S4159.  Get High-res Image Gene #1616: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCPG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 0.31

Table S16338.  Gene #1616: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCPG1 MUTATED 4 0 2
CCPG1 WILD-TYPE 58 73 73
'CCPG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.12

Table S16339.  Gene #1616: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCPG1 MUTATED 0 1 6
CCPG1 WILD-TYPE 70 119 94

Figure S4160.  Get High-res Image Gene #1616: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CCPG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S16340.  Gene #1616: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCPG1 MUTATED 0 0 1 0 0 6 0 0 0
CCPG1 WILD-TYPE 41 26 29 29 39 63 20 14 22
'CCPG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S16341.  Gene #1616: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCPG1 MUTATED 0 3 3 5
CCPG1 WILD-TYPE 100 69 69 116
'CCPG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.4

Table S16342.  Gene #1616: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCPG1 MUTATED 0 1 5 3 2
CCPG1 WILD-TYPE 59 74 69 116 36
'CCPG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.74

Table S16343.  Gene #1616: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCPG1 MUTATED 0 4 1 1 4
CCPG1 WILD-TYPE 51 72 60 70 91
'CCPG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.65

Table S16344.  Gene #1616: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCPG1 MUTATED 1 1 0 2 1 1 1 1 2
CCPG1 WILD-TYPE 68 47 39 14 52 19 20 37 48
'CCPG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S16345.  Gene #1616: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CCPG1 MUTATED 0 0 1 0 2 0
CCPG1 WILD-TYPE 13 16 13 11 9 9
'CCPG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.99

Table S16346.  Gene #1616: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CCPG1 MUTATED 0 0 0 0 1 1 1 0 0
CCPG1 WILD-TYPE 11 7 7 9 7 6 10 9 5
'RIC8B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S16347.  Gene #1617: 'RIC8B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RIC8B MUTATED 2 2 5
RIC8B WILD-TYPE 40 171 142
'RIC8B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.84

Table S16348.  Gene #1617: 'RIC8B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RIC8B MUTATED 3 1 3
RIC8B WILD-TYPE 59 72 72
'RIC8B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S16349.  Gene #1617: 'RIC8B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RIC8B MUTATED 1 2 4
RIC8B WILD-TYPE 69 118 96
'RIC8B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.74

Table S16350.  Gene #1617: 'RIC8B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RIC8B MUTATED 3 1 0 1 0 1 1 0 0
RIC8B WILD-TYPE 38 25 30 28 39 68 19 14 22
'RIC8B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S16351.  Gene #1617: 'RIC8B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RIC8B MUTATED 1 2 3 3
RIC8B WILD-TYPE 99 70 69 118
'RIC8B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S16352.  Gene #1617: 'RIC8B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RIC8B MUTATED 3 1 2 1 2
RIC8B WILD-TYPE 56 74 72 118 36
'RIC8B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S16353.  Gene #1617: 'RIC8B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RIC8B MUTATED 1 3 1 1 3
RIC8B WILD-TYPE 50 73 60 70 92
'RIC8B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S16354.  Gene #1617: 'RIC8B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RIC8B MUTATED 2 2 0 2 0 1 0 1 1
RIC8B WILD-TYPE 67 46 39 14 53 19 21 37 49
'KIAA1429 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.12

Table S16355.  Gene #1618: 'KIAA1429 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIAA1429 MUTATED 4 0 0 3 0
KIAA1429 WILD-TYPE 28 18 46 24 23

Figure S4161.  Get High-res Image Gene #1618: 'KIAA1429 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KIAA1429 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 0.22

Table S16356.  Gene #1618: 'KIAA1429 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIAA1429 MUTATED 5 1 1
KIAA1429 WILD-TYPE 38 66 35

Figure S4162.  Get High-res Image Gene #1618: 'KIAA1429 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KIAA1429 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0028

Table S16357.  Gene #1618: 'KIAA1429 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA1429 MUTATED 0 1 16
KIAA1429 WILD-TYPE 42 172 131

Figure S4163.  Get High-res Image Gene #1618: 'KIAA1429 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA1429 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.074 (Fisher's exact test), Q value = 0.29

Table S16358.  Gene #1618: 'KIAA1429 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA1429 MUTATED 6 1 2
KIAA1429 WILD-TYPE 56 72 73
'KIAA1429 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S16359.  Gene #1618: 'KIAA1429 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA1429 MUTATED 2 4 9
KIAA1429 WILD-TYPE 68 116 91
'KIAA1429 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S16360.  Gene #1618: 'KIAA1429 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA1429 MUTATED 0 0 2 1 2 8 1 0 1
KIAA1429 WILD-TYPE 41 26 28 28 37 61 19 14 21
'KIAA1429 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S16361.  Gene #1618: 'KIAA1429 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA1429 MUTATED 0 3 6 8
KIAA1429 WILD-TYPE 100 69 66 113

Figure S4164.  Get High-res Image Gene #1618: 'KIAA1429 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIAA1429 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00503 (Fisher's exact test), Q value = 0.066

Table S16362.  Gene #1618: 'KIAA1429 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA1429 MUTATED 0 2 7 3 5
KIAA1429 WILD-TYPE 59 73 67 116 33

Figure S4165.  Get High-res Image Gene #1618: 'KIAA1429 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA1429 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.16

Table S16363.  Gene #1618: 'KIAA1429 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA1429 MUTATED 1 7 0 1 7
KIAA1429 WILD-TYPE 50 69 61 70 88

Figure S4166.  Get High-res Image Gene #1618: 'KIAA1429 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIAA1429 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S16364.  Gene #1618: 'KIAA1429 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA1429 MUTATED 2 5 0 0 2 1 1 4 1
KIAA1429 WILD-TYPE 67 43 39 16 51 19 20 34 49
'SPATA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S16365.  Gene #1619: 'SPATA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SPATA6 MUTATED 0 2 4
SPATA6 WILD-TYPE 42 171 143
'SPATA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S16366.  Gene #1619: 'SPATA6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SPATA6 MUTATED 1 3 1
SPATA6 WILD-TYPE 61 70 74
'SPATA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16367.  Gene #1619: 'SPATA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SPATA6 MUTATED 1 2 2
SPATA6 WILD-TYPE 69 118 98
'SPATA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 0.74

Table S16368.  Gene #1619: 'SPATA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SPATA6 MUTATED 1 0 0 0 0 2 0 0 2
SPATA6 WILD-TYPE 40 26 30 29 39 67 20 14 20
'SPATA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S16369.  Gene #1619: 'SPATA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SPATA6 MUTATED 1 2 2 1
SPATA6 WILD-TYPE 99 70 70 120
'SPATA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S16370.  Gene #1619: 'SPATA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SPATA6 MUTATED 1 2 2 0 1
SPATA6 WILD-TYPE 58 73 72 119 37
'SPATA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S16371.  Gene #1619: 'SPATA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SPATA6 MUTATED 1 3 1 0 1
SPATA6 WILD-TYPE 50 73 60 71 94
'SPATA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.94

Table S16372.  Gene #1619: 'SPATA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SPATA6 MUTATED 3 1 0 0 1 0 1 0 0
SPATA6 WILD-TYPE 66 47 39 16 52 20 20 38 50
'PIGN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S16373.  Gene #1620: 'PIGN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PIGN MUTATED 1 0 6
PIGN WILD-TYPE 41 173 141

Figure S4167.  Get High-res Image Gene #1620: 'PIGN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIGN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 0.21

Table S16374.  Gene #1620: 'PIGN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PIGN MUTATED 4 0 1
PIGN WILD-TYPE 58 73 74

Figure S4168.  Get High-res Image Gene #1620: 'PIGN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PIGN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S16375.  Gene #1620: 'PIGN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PIGN MUTATED 1 1 3
PIGN WILD-TYPE 69 119 97
'PIGN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S16376.  Gene #1620: 'PIGN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PIGN MUTATED 0 0 0 1 1 3 0 0 0
PIGN WILD-TYPE 41 26 30 28 38 66 20 14 22
'PIGN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.28

Table S16377.  Gene #1620: 'PIGN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PIGN MUTATED 0 1 4 2
PIGN WILD-TYPE 100 71 68 119
'PIGN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.099

Table S16378.  Gene #1620: 'PIGN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PIGN MUTATED 1 0 4 0 2
PIGN WILD-TYPE 58 75 70 119 36

Figure S4169.  Get High-res Image Gene #1620: 'PIGN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIGN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0771 (Fisher's exact test), Q value = 0.3

Table S16379.  Gene #1620: 'PIGN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PIGN MUTATED 0 1 4 0 2
PIGN WILD-TYPE 51 75 57 71 93
'PIGN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S16380.  Gene #1620: 'PIGN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PIGN MUTATED 0 3 0 0 2 0 0 2 0
PIGN WILD-TYPE 69 45 39 16 51 20 21 36 50
'OR4N2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0543 (Fisher's exact test), Q value = 0.25

Table S16381.  Gene #1621: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR4N2 MUTATED 0 2 8
OR4N2 WILD-TYPE 42 171 139
'OR4N2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S16382.  Gene #1621: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR4N2 MUTATED 2 1 5
OR4N2 WILD-TYPE 60 72 70
'OR4N2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S16383.  Gene #1621: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR4N2 MUTATED 1 5 2
OR4N2 WILD-TYPE 69 115 98
'OR4N2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.75

Table S16384.  Gene #1621: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR4N2 MUTATED 0 0 0 2 1 3 1 1 0
OR4N2 WILD-TYPE 41 26 30 27 38 66 19 13 22
'OR4N2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S16385.  Gene #1621: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR4N2 MUTATED 2 5 1 2
OR4N2 WILD-TYPE 98 67 71 119
'OR4N2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0697 (Fisher's exact test), Q value = 0.28

Table S16386.  Gene #1621: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR4N2 MUTATED 0 3 5 1 1
OR4N2 WILD-TYPE 59 72 69 118 37
'OR4N2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S16387.  Gene #1621: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR4N2 MUTATED 0 6 0 2 2
OR4N2 WILD-TYPE 51 70 61 69 93

Figure S4170.  Get High-res Image Gene #1621: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR4N2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0601 (Fisher's exact test), Q value = 0.26

Table S16388.  Gene #1621: 'OR4N2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR4N2 MUTATED 3 0 0 3 1 0 0 1 2
OR4N2 WILD-TYPE 66 48 39 13 52 20 21 37 48
'RALA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S16389.  Gene #1622: 'RALA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RALA MUTATED 0 3 4
RALA WILD-TYPE 42 170 143
'RALA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0708 (Fisher's exact test), Q value = 0.29

Table S16390.  Gene #1622: 'RALA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RALA MUTATED 5 1 1
RALA WILD-TYPE 57 72 74
'RALA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S16391.  Gene #1622: 'RALA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RALA MUTATED 0 2 4
RALA WILD-TYPE 70 118 96
'RALA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 0.93

Table S16392.  Gene #1622: 'RALA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RALA MUTATED 0 1 0 0 1 4 0 0 0
RALA WILD-TYPE 41 25 30 29 38 65 20 14 22
'RALA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S16393.  Gene #1622: 'RALA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RALA MUTATED 2 1 2 2
RALA WILD-TYPE 98 71 70 119
'RALA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S16394.  Gene #1622: 'RALA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RALA MUTATED 1 1 3 2 0
RALA WILD-TYPE 58 74 71 117 38
'RALA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S16395.  Gene #1622: 'RALA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RALA MUTATED 1 4 1 0 1
RALA WILD-TYPE 50 72 60 71 94
'RALA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S16396.  Gene #1622: 'RALA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RALA MUTATED 2 2 0 1 1 0 0 0 1
RALA WILD-TYPE 67 46 39 15 52 20 21 38 49
'MUS81 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.13

Table S16397.  Gene #1623: 'MUS81 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MUS81 MUTATED 1 0 6
MUS81 WILD-TYPE 41 173 141

Figure S4171.  Get High-res Image Gene #1623: 'MUS81 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MUS81 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0521 (Fisher's exact test), Q value = 0.24

Table S16398.  Gene #1623: 'MUS81 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MUS81 MUTATED 0 1 5
MUS81 WILD-TYPE 62 72 70
'MUS81 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.18

Table S16399.  Gene #1623: 'MUS81 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MUS81 MUTATED 0 5 0
MUS81 WILD-TYPE 70 115 100

Figure S4172.  Get High-res Image Gene #1623: 'MUS81 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MUS81 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S16400.  Gene #1623: 'MUS81 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MUS81 MUTATED 0 1 0 3 0 0 1 0 0
MUS81 WILD-TYPE 41 25 30 26 39 69 19 14 22

Figure S4173.  Get High-res Image Gene #1623: 'MUS81 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MUS81 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S16401.  Gene #1623: 'MUS81 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MUS81 MUTATED 1 5 0 1
MUS81 WILD-TYPE 99 67 72 120

Figure S4174.  Get High-res Image Gene #1623: 'MUS81 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MUS81 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0299 (Fisher's exact test), Q value = 0.18

Table S16402.  Gene #1623: 'MUS81 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MUS81 MUTATED 0 2 4 0 1
MUS81 WILD-TYPE 59 73 70 119 37

Figure S4175.  Get High-res Image Gene #1623: 'MUS81 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MUS81 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.18

Table S16403.  Gene #1623: 'MUS81 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MUS81 MUTATED 1 5 0 0 1
MUS81 WILD-TYPE 50 71 61 71 94

Figure S4176.  Get High-res Image Gene #1623: 'MUS81 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MUS81 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S16404.  Gene #1623: 'MUS81 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MUS81 MUTATED 2 1 0 1 2 0 1 0 0
MUS81 WILD-TYPE 67 47 39 15 51 20 20 38 50
'CDHR5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S16405.  Gene #1624: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CDHR5 MUTATED 3 0 1 1 0
CDHR5 WILD-TYPE 29 18 45 26 23
'CDHR5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.024 (Fisher's exact test), Q value = 0.16

Table S16406.  Gene #1624: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CDHR5 MUTATED 4 0 1
CDHR5 WILD-TYPE 39 67 35

Figure S4177.  Get High-res Image Gene #1624: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDHR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00246 (Fisher's exact test), Q value = 0.042

Table S16407.  Gene #1624: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CDHR5 MUTATED 2 0 8
CDHR5 WILD-TYPE 40 173 139

Figure S4178.  Get High-res Image Gene #1624: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDHR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0817 (Fisher's exact test), Q value = 0.31

Table S16408.  Gene #1624: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CDHR5 MUTATED 1 0 4
CDHR5 WILD-TYPE 61 73 71
'CDHR5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S16409.  Gene #1624: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CDHR5 MUTATED 1 3 6
CDHR5 WILD-TYPE 69 117 94
'CDHR5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S16410.  Gene #1624: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CDHR5 MUTATED 0 0 0 1 2 5 2 0 0
CDHR5 WILD-TYPE 41 26 30 28 37 64 18 14 22
'CDHR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S16411.  Gene #1624: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CDHR5 MUTATED 0 5 1 5
CDHR5 WILD-TYPE 100 67 71 116

Figure S4179.  Get High-res Image Gene #1624: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CDHR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0214 (Fisher's exact test), Q value = 0.15

Table S16412.  Gene #1624: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CDHR5 MUTATED 0 1 4 2 4
CDHR5 WILD-TYPE 59 74 70 117 34

Figure S4180.  Get High-res Image Gene #1624: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDHR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S16413.  Gene #1624: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CDHR5 MUTATED 1 4 0 1 5
CDHR5 WILD-TYPE 50 72 61 70 90
'CDHR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S16414.  Gene #1624: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CDHR5 MUTATED 2 0 0 1 1 1 1 4 1
CDHR5 WILD-TYPE 67 48 39 15 52 19 20 34 49
'ZNF318 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00049 (Fisher's exact test), Q value = 0.016

Table S16415.  Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF318 MUTATED 7 0 0 2 0
ZNF318 WILD-TYPE 25 18 46 25 23

Figure S4181.  Get High-res Image Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ZNF318 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S16416.  Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF318 MUTATED 9 0 0
ZNF318 WILD-TYPE 34 67 36

Figure S4182.  Get High-res Image Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ZNF318 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00044 (Fisher's exact test), Q value = 0.015

Table S16417.  Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF318 MUTATED 1 5 21
ZNF318 WILD-TYPE 41 168 126

Figure S4183.  Get High-res Image Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF318 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0997 (Fisher's exact test), Q value = 0.34

Table S16418.  Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF318 MUTATED 9 3 6
ZNF318 WILD-TYPE 53 70 69
'ZNF318 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00513 (Fisher's exact test), Q value = 0.067

Table S16419.  Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF318 MUTATED 1 8 15
ZNF318 WILD-TYPE 69 112 85

Figure S4184.  Get High-res Image Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZNF318 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0318 (Fisher's exact test), Q value = 0.19

Table S16420.  Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF318 MUTATED 1 2 0 0 3 10 4 1 3
ZNF318 WILD-TYPE 40 24 30 29 36 59 16 13 19

Figure S4185.  Get High-res Image Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ZNF318 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0973 (Fisher's exact test), Q value = 0.34

Table S16421.  Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF318 MUTATED 3 9 7 9
ZNF318 WILD-TYPE 97 63 65 112
'ZNF318 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0081

Table S16422.  Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF318 MUTATED 7 3 7 2 9
ZNF318 WILD-TYPE 52 72 67 117 29

Figure S4186.  Get High-res Image Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF318 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0585 (Fisher's exact test), Q value = 0.26

Table S16423.  Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF318 MUTATED 1 8 4 2 12
ZNF318 WILD-TYPE 50 68 57 69 83
'ZNF318 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00173 (Fisher's exact test), Q value = 0.035

Table S16424.  Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF318 MUTATED 4 4 0 4 3 1 0 9 2
ZNF318 WILD-TYPE 65 44 39 12 50 19 21 29 48

Figure S4187.  Get High-res Image Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF318 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.77

Table S16425.  Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF318 MUTATED 0 1 1 2 2 0
ZNF318 WILD-TYPE 13 15 13 9 9 9
'ZNF318 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S16426.  Gene #1625: 'ZNF318 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF318 MUTATED 0 1 0 1 1 1 1 1 0
ZNF318 WILD-TYPE 11 6 7 8 7 6 10 8 5
'IL7R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S16427.  Gene #1626: 'IL7R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IL7R MUTATED 1 4 6
IL7R WILD-TYPE 41 169 141
'IL7R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.28

Table S16428.  Gene #1626: 'IL7R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IL7R MUTATED 6 2 1
IL7R WILD-TYPE 56 71 74
'IL7R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S16429.  Gene #1626: 'IL7R MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IL7R MUTATED 1 3 5
IL7R WILD-TYPE 69 117 95
'IL7R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.76

Table S16430.  Gene #1626: 'IL7R MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IL7R MUTATED 1 2 1 0 0 5 0 0 0
IL7R WILD-TYPE 40 24 29 29 39 64 20 14 22
'IL7R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S16431.  Gene #1626: 'IL7R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IL7R MUTATED 4 1 3 3
IL7R WILD-TYPE 96 71 69 118
'IL7R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 0.98

Table S16432.  Gene #1626: 'IL7R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IL7R MUTATED 3 2 3 2 1
IL7R WILD-TYPE 56 73 71 117 37
'IL7R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.67

Table S16433.  Gene #1626: 'IL7R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IL7R MUTATED 3 2 3 1 1
IL7R WILD-TYPE 48 74 58 70 94
'IL7R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.45

Table S16434.  Gene #1626: 'IL7R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IL7R MUTATED 2 5 1 0 0 0 0 0 2
IL7R WILD-TYPE 67 43 38 16 53 20 21 38 48
'LRRTM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S16435.  Gene #1627: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LRRTM2 MUTATED 0 1 4
LRRTM2 WILD-TYPE 42 172 143
'LRRTM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0716 (Fisher's exact test), Q value = 0.29

Table S16436.  Gene #1627: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LRRTM2 MUTATED 3 1 0
LRRTM2 WILD-TYPE 59 72 75
'LRRTM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S16437.  Gene #1627: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LRRTM2 MUTATED 0 0 4
LRRTM2 WILD-TYPE 70 120 96

Figure S4188.  Get High-res Image Gene #1627: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LRRTM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S16438.  Gene #1627: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LRRTM2 MUTATED 0 0 0 0 0 3 1 0 0
LRRTM2 WILD-TYPE 41 26 30 29 39 66 19 14 22
'LRRTM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S16439.  Gene #1627: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LRRTM2 MUTATED 1 2 1 1
LRRTM2 WILD-TYPE 99 70 71 120
'LRRTM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S16440.  Gene #1627: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LRRTM2 MUTATED 0 2 2 0 1
LRRTM2 WILD-TYPE 59 73 72 119 37
'LRRTM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S16441.  Gene #1627: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LRRTM2 MUTATED 1 3 1 0 0
LRRTM2 WILD-TYPE 50 73 60 71 95
'LRRTM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S16442.  Gene #1627: 'LRRTM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LRRTM2 MUTATED 3 0 0 0 0 1 1 0 0
LRRTM2 WILD-TYPE 66 48 39 16 53 19 20 38 50
'IGSF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S16443.  Gene #1628: 'IGSF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IGSF1 MUTATED 5 0 2 2 0
IGSF1 WILD-TYPE 27 18 44 25 23
'IGSF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S16444.  Gene #1628: 'IGSF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IGSF1 MUTATED 5 2 2
IGSF1 WILD-TYPE 38 65 34
'IGSF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0039 (Fisher's exact test), Q value = 0.056

Table S16445.  Gene #1628: 'IGSF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IGSF1 MUTATED 1 4 16
IGSF1 WILD-TYPE 41 169 131

Figure S4189.  Get High-res Image Gene #1628: 'IGSF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IGSF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 0.31

Table S16446.  Gene #1628: 'IGSF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IGSF1 MUTATED 5 1 7
IGSF1 WILD-TYPE 57 72 68
'IGSF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0482 (Fisher's exact test), Q value = 0.24

Table S16447.  Gene #1628: 'IGSF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IGSF1 MUTATED 0 7 7
IGSF1 WILD-TYPE 70 113 93

Figure S4190.  Get High-res Image Gene #1628: 'IGSF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'IGSF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 0.78

Table S16448.  Gene #1628: 'IGSF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IGSF1 MUTATED 1 0 1 4 2 5 1 0 0
IGSF1 WILD-TYPE 40 26 29 25 37 64 19 14 22
'IGSF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S16449.  Gene #1628: 'IGSF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IGSF1 MUTATED 2 6 4 9
IGSF1 WILD-TYPE 98 66 68 112
'IGSF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00962 (Fisher's exact test), Q value = 0.092

Table S16450.  Gene #1628: 'IGSF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IGSF1 MUTATED 1 2 9 4 5
IGSF1 WILD-TYPE 58 73 65 115 33

Figure S4191.  Get High-res Image Gene #1628: 'IGSF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IGSF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0485 (Fisher's exact test), Q value = 0.24

Table S16451.  Gene #1628: 'IGSF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IGSF1 MUTATED 0 9 3 2 6
IGSF1 WILD-TYPE 51 67 58 69 89

Figure S4192.  Get High-res Image Gene #1628: 'IGSF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IGSF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S16452.  Gene #1628: 'IGSF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IGSF1 MUTATED 5 3 1 1 3 1 1 4 1
IGSF1 WILD-TYPE 64 45 38 15 50 19 20 34 49
'IGSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S16453.  Gene #1628: 'IGSF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IGSF1 MUTATED 0 0 2 0 1 1
IGSF1 WILD-TYPE 13 16 12 11 10 8
'IGSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S16454.  Gene #1628: 'IGSF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IGSF1 MUTATED 0 0 0 1 1 1 1 0 0
IGSF1 WILD-TYPE 11 7 7 8 7 6 10 9 5
'GCC2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S16455.  Gene #1629: 'GCC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GCC2 MUTATED 2 0 0 1 0
GCC2 WILD-TYPE 30 18 46 26 23
'GCC2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S16456.  Gene #1629: 'GCC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GCC2 MUTATED 2 1 0
GCC2 WILD-TYPE 41 66 36
'GCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00775 (Fisher's exact test), Q value = 0.082

Table S16457.  Gene #1629: 'GCC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GCC2 MUTATED 0 1 9
GCC2 WILD-TYPE 42 172 138

Figure S4193.  Get High-res Image Gene #1629: 'GCC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.62

Table S16458.  Gene #1629: 'GCC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GCC2 MUTATED 4 1 2
GCC2 WILD-TYPE 58 72 73
'GCC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S16459.  Gene #1629: 'GCC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GCC2 MUTATED 3 2 3
GCC2 WILD-TYPE 67 118 97
'GCC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S16460.  Gene #1629: 'GCC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GCC2 MUTATED 2 0 1 0 1 3 0 0 1
GCC2 WILD-TYPE 39 26 29 29 38 66 20 14 21
'GCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00811 (Fisher's exact test), Q value = 0.084

Table S16461.  Gene #1629: 'GCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GCC2 MUTATED 0 1 6 3
GCC2 WILD-TYPE 100 71 66 118

Figure S4194.  Get High-res Image Gene #1629: 'GCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.08 (Fisher's exact test), Q value = 0.31

Table S16462.  Gene #1629: 'GCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GCC2 MUTATED 1 1 5 1 2
GCC2 WILD-TYPE 58 74 69 118 36
'GCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S16463.  Gene #1629: 'GCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GCC2 MUTATED 1 4 2 1 2
GCC2 WILD-TYPE 50 72 59 70 93
'GCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.61

Table S16464.  Gene #1629: 'GCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GCC2 MUTATED 2 4 0 0 1 1 0 2 0
GCC2 WILD-TYPE 67 44 39 16 52 19 21 36 50
'GCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.54

Table S16465.  Gene #1629: 'GCC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GCC2 MUTATED 0 3 1 0 0 0
GCC2 WILD-TYPE 13 13 13 11 11 9
'GCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.95

Table S16466.  Gene #1629: 'GCC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GCC2 MUTATED 2 0 0 0 0 1 1 0 0
GCC2 WILD-TYPE 9 7 7 9 8 6 10 9 5
'ATRNL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.18

Table S16467.  Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATRNL1 MUTATED 4 0 0 1 0
ATRNL1 WILD-TYPE 28 18 46 26 23

Figure S4195.  Get High-res Image Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATRNL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0234 (Fisher's exact test), Q value = 0.16

Table S16468.  Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATRNL1 MUTATED 4 0 1
ATRNL1 WILD-TYPE 39 67 35

Figure S4196.  Get High-res Image Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ATRNL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00187 (Fisher's exact test), Q value = 0.036

Table S16469.  Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATRNL1 MUTATED 1 4 17
ATRNL1 WILD-TYPE 41 169 130

Figure S4197.  Get High-res Image Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATRNL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.38

Table S16470.  Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATRNL1 MUTATED 7 2 7
ATRNL1 WILD-TYPE 55 71 68
'ATRNL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 0.21

Table S16471.  Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATRNL1 MUTATED 2 4 11
ATRNL1 WILD-TYPE 68 116 89

Figure S4198.  Get High-res Image Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ATRNL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0852 (Fisher's exact test), Q value = 0.32

Table S16472.  Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATRNL1 MUTATED 2 0 3 0 0 8 2 0 2
ATRNL1 WILD-TYPE 39 26 27 29 39 61 18 14 20
'ATRNL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.89

Table S16473.  Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATRNL1 MUTATED 5 7 4 6
ATRNL1 WILD-TYPE 95 65 68 115
'ATRNL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00291 (Fisher's exact test), Q value = 0.047

Table S16474.  Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATRNL1 MUTATED 2 6 8 1 5
ATRNL1 WILD-TYPE 57 69 66 118 33

Figure S4199.  Get High-res Image Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATRNL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S16475.  Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATRNL1 MUTATED 2 8 4 3 4
ATRNL1 WILD-TYPE 49 68 57 68 91
'ATRNL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S16476.  Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATRNL1 MUTATED 5 2 1 4 4 0 1 3 1
ATRNL1 WILD-TYPE 64 46 38 12 49 20 20 35 49
'ATRNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.58

Table S16477.  Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ATRNL1 MUTATED 0 1 1 0 0 2
ATRNL1 WILD-TYPE 13 15 13 11 11 7
'ATRNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S16478.  Gene #1630: 'ATRNL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ATRNL1 MUTATED 1 0 0 0 0 1 1 1 0
ATRNL1 WILD-TYPE 10 7 7 9 8 6 10 8 5
'ERN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S16479.  Gene #1631: 'ERN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ERN1 MUTATED 1 1 1
ERN1 WILD-TYPE 41 172 146
'ERN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S16480.  Gene #1631: 'ERN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ERN1 MUTATED 1 0 2
ERN1 WILD-TYPE 69 120 98
'ERN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16481.  Gene #1631: 'ERN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ERN1 MUTATED 1 0 0 0 1 1 0 0 0
ERN1 WILD-TYPE 40 26 30 29 38 68 20 14 22
'ERN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S16482.  Gene #1631: 'ERN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ERN1 MUTATED 0 0 2 1
ERN1 WILD-TYPE 100 72 70 120
'ERN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S16483.  Gene #1631: 'ERN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ERN1 MUTATED 1 0 1 1 0
ERN1 WILD-TYPE 58 75 73 118 38
'ERN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S16484.  Gene #1631: 'ERN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ERN1 MUTATED 1 1 0 1 0
ERN1 WILD-TYPE 50 75 61 70 95
'ERN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S16485.  Gene #1631: 'ERN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ERN1 MUTATED 1 1 0 0 0 0 0 0 1
ERN1 WILD-TYPE 68 47 39 16 53 20 21 38 49
'BTBD7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S16486.  Gene #1632: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BTBD7 MUTATED 3 1 0 1 0
BTBD7 WILD-TYPE 29 17 46 26 23
'BTBD7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S16487.  Gene #1632: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BTBD7 MUTATED 2 2 1
BTBD7 WILD-TYPE 41 65 35
'BTBD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00589 (Fisher's exact test), Q value = 0.073

Table S16488.  Gene #1632: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BTBD7 MUTATED 1 1 10
BTBD7 WILD-TYPE 41 172 137

Figure S4200.  Get High-res Image Gene #1632: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BTBD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S16489.  Gene #1632: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BTBD7 MUTATED 2 2 4
BTBD7 WILD-TYPE 60 71 71
'BTBD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.65

Table S16490.  Gene #1632: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BTBD7 MUTATED 1 4 6
BTBD7 WILD-TYPE 69 116 94
'BTBD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S16491.  Gene #1632: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BTBD7 MUTATED 0 0 2 2 1 6 0 0 0
BTBD7 WILD-TYPE 41 26 28 27 38 63 20 14 22
'BTBD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S16492.  Gene #1632: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BTBD7 MUTATED 1 5 2 4
BTBD7 WILD-TYPE 99 67 70 117
'BTBD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S16493.  Gene #1632: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BTBD7 MUTATED 0 2 5 3 2
BTBD7 WILD-TYPE 59 73 69 116 36
'BTBD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.14

Table S16494.  Gene #1632: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BTBD7 MUTATED 0 6 0 3 1
BTBD7 WILD-TYPE 51 70 61 68 94

Figure S4201.  Get High-res Image Gene #1632: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.087 (Fisher's exact test), Q value = 0.32

Table S16495.  Gene #1632: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BTBD7 MUTATED 5 0 0 1 2 1 1 0 0
BTBD7 WILD-TYPE 64 48 39 15 51 19 20 38 50
'COL11A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0663 (Fisher's exact test), Q value = 0.28

Table S16496.  Gene #1633: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
COL11A1 MUTATED 7 0 2 2 2
COL11A1 WILD-TYPE 25 18 44 25 21
'COL11A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.49

Table S16497.  Gene #1633: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
COL11A1 MUTATED 6 3 4
COL11A1 WILD-TYPE 37 64 32
'COL11A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0072

Table S16498.  Gene #1633: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
COL11A1 MUTATED 4 10 31
COL11A1 WILD-TYPE 38 163 116

Figure S4202.  Get High-res Image Gene #1633: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'COL11A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.2

Table S16499.  Gene #1633: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
COL11A1 MUTATED 10 5 16
COL11A1 WILD-TYPE 52 68 59

Figure S4203.  Get High-res Image Gene #1633: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'COL11A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 0.3

Table S16500.  Gene #1633: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
COL11A1 MUTATED 6 12 19
COL11A1 WILD-TYPE 64 108 81
'COL11A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.99

Table S16501.  Gene #1633: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
COL11A1 MUTATED 5 3 2 2 6 12 4 2 1
COL11A1 WILD-TYPE 36 23 28 27 33 57 16 12 21
'COL11A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.42

Table S16502.  Gene #1633: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
COL11A1 MUTATED 8 14 10 13
COL11A1 WILD-TYPE 92 58 62 108
'COL11A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0087 (Fisher's exact test), Q value = 0.088

Table S16503.  Gene #1633: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
COL11A1 MUTATED 6 7 18 8 6
COL11A1 WILD-TYPE 53 68 56 111 32

Figure S4204.  Get High-res Image Gene #1633: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'COL11A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S16504.  Gene #1633: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
COL11A1 MUTATED 6 15 6 4 12
COL11A1 WILD-TYPE 45 61 55 67 83
'COL11A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S16505.  Gene #1633: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
COL11A1 MUTATED 9 6 1 5 6 4 1 6 5
COL11A1 WILD-TYPE 60 42 38 11 47 16 20 32 45
'COL11A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S16506.  Gene #1633: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
COL11A1 MUTATED 0 1 4 1 2 1
COL11A1 WILD-TYPE 13 15 10 10 9 8
'COL11A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.87

Table S16507.  Gene #1633: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
COL11A1 MUTATED 1 0 0 2 2 0 3 1 0
COL11A1 WILD-TYPE 10 7 7 7 6 7 8 8 5
'TTLL13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 0.27

Table S16508.  Gene #1634: 'TTLL13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TTLL13 MUTATED 0 0 4
TTLL13 WILD-TYPE 42 173 143
'TTLL13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S16509.  Gene #1634: 'TTLL13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TTLL13 MUTATED 1 0 2
TTLL13 WILD-TYPE 61 73 73
'TTLL13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.27

Table S16510.  Gene #1634: 'TTLL13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TTLL13 MUTATED 1 0 4
TTLL13 WILD-TYPE 69 120 96
'TTLL13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.085 (Fisher's exact test), Q value = 0.32

Table S16511.  Gene #1634: 'TTLL13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TTLL13 MUTATED 1 0 0 0 2 0 2 0 0
TTLL13 WILD-TYPE 40 26 30 29 37 69 18 14 22
'TTLL13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S16512.  Gene #1634: 'TTLL13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TTLL13 MUTATED 0 2 1 2
TTLL13 WILD-TYPE 100 70 71 119
'TTLL13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 0.21

Table S16513.  Gene #1634: 'TTLL13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TTLL13 MUTATED 1 0 2 0 2
TTLL13 WILD-TYPE 58 75 72 119 36

Figure S4205.  Get High-res Image Gene #1634: 'TTLL13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TTLL13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.98

Table S16514.  Gene #1634: 'TTLL13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TTLL13 MUTATED 0 2 1 0 2
TTLL13 WILD-TYPE 51 74 60 71 93
'TTLL13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.56

Table S16515.  Gene #1634: 'TTLL13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TTLL13 MUTATED 1 1 0 1 0 0 0 2 0
TTLL13 WILD-TYPE 68 47 39 15 53 20 21 36 50
'RPS6KC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S16516.  Gene #1635: 'RPS6KC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RPS6KC1 MUTATED 2 0 0 2 0
RPS6KC1 WILD-TYPE 30 18 46 25 23
'RPS6KC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S16517.  Gene #1635: 'RPS6KC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RPS6KC1 MUTATED 3 1 0
RPS6KC1 WILD-TYPE 40 66 36
'RPS6KC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.13

Table S16518.  Gene #1635: 'RPS6KC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RPS6KC1 MUTATED 0 3 11
RPS6KC1 WILD-TYPE 42 170 136

Figure S4206.  Get High-res Image Gene #1635: 'RPS6KC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RPS6KC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S16519.  Gene #1635: 'RPS6KC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RPS6KC1 MUTATED 1 2 7
RPS6KC1 WILD-TYPE 61 71 68
'RPS6KC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S16520.  Gene #1635: 'RPS6KC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RPS6KC1 MUTATED 2 8 3
RPS6KC1 WILD-TYPE 68 112 97
'RPS6KC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.59

Table S16521.  Gene #1635: 'RPS6KC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RPS6KC1 MUTATED 1 2 1 3 3 1 2 0 0
RPS6KC1 WILD-TYPE 40 24 29 26 36 68 18 14 22
'RPS6KC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.56

Table S16522.  Gene #1635: 'RPS6KC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RPS6KC1 MUTATED 4 6 1 4
RPS6KC1 WILD-TYPE 96 66 71 117
'RPS6KC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.21

Table S16523.  Gene #1635: 'RPS6KC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RPS6KC1 MUTATED 1 5 5 1 3
RPS6KC1 WILD-TYPE 58 70 69 118 35

Figure S4207.  Get High-res Image Gene #1635: 'RPS6KC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RPS6KC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 0.23

Table S16524.  Gene #1635: 'RPS6KC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RPS6KC1 MUTATED 2 7 1 0 5
RPS6KC1 WILD-TYPE 49 69 60 71 90

Figure S4208.  Get High-res Image Gene #1635: 'RPS6KC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RPS6KC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S16525.  Gene #1635: 'RPS6KC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RPS6KC1 MUTATED 3 2 0 2 3 2 0 3 0
RPS6KC1 WILD-TYPE 66 46 39 14 50 18 21 35 50
'ZNF350 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.74

Table S16526.  Gene #1636: 'ZNF350 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF350 MUTATED 3 0 1 1 0
ZNF350 WILD-TYPE 29 18 45 26 23
'ZNF350 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S16527.  Gene #1636: 'ZNF350 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF350 MUTATED 3 2 0
ZNF350 WILD-TYPE 40 65 36
'ZNF350 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00084 (Fisher's exact test), Q value = 0.022

Table S16528.  Gene #1636: 'ZNF350 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF350 MUTATED 0 0 9
ZNF350 WILD-TYPE 42 173 138

Figure S4209.  Get High-res Image Gene #1636: 'ZNF350 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF350 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S16529.  Gene #1636: 'ZNF350 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF350 MUTATED 3 0 1
ZNF350 WILD-TYPE 59 73 74
'ZNF350 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S16530.  Gene #1636: 'ZNF350 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF350 MUTATED 1 2 4
ZNF350 WILD-TYPE 69 118 96
'ZNF350 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S16531.  Gene #1636: 'ZNF350 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF350 MUTATED 1 1 1 0 0 3 1 0 0
ZNF350 WILD-TYPE 40 25 29 29 39 66 19 14 22
'ZNF350 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S16532.  Gene #1636: 'ZNF350 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF350 MUTATED 0 2 2 5
ZNF350 WILD-TYPE 100 70 70 116
'ZNF350 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S16533.  Gene #1636: 'ZNF350 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF350 MUTATED 0 1 3 3 2
ZNF350 WILD-TYPE 59 74 71 116 36
'ZNF350 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S16534.  Gene #1636: 'ZNF350 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF350 MUTATED 0 2 0 1 6
ZNF350 WILD-TYPE 51 74 61 70 89
'ZNF350 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.51

Table S16535.  Gene #1636: 'ZNF350 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF350 MUTATED 1 2 0 0 0 1 2 2 1
ZNF350 WILD-TYPE 68 46 39 16 53 19 19 36 49
'ITPRIPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 0.31

Table S16536.  Gene #1637: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ITPRIPL1 MUTATED 0 1 6
ITPRIPL1 WILD-TYPE 42 172 141
'ITPRIPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.11

Table S16537.  Gene #1637: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ITPRIPL1 MUTATED 5 0 1
ITPRIPL1 WILD-TYPE 57 73 74

Figure S4210.  Get High-res Image Gene #1637: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ITPRIPL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.27

Table S16538.  Gene #1637: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ITPRIPL1 MUTATED 2 0 4
ITPRIPL1 WILD-TYPE 68 120 96
'ITPRIPL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S16539.  Gene #1637: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ITPRIPL1 MUTATED 2 0 0 0 0 4 0 0 0
ITPRIPL1 WILD-TYPE 39 26 30 29 39 65 20 14 22
'ITPRIPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.19

Table S16540.  Gene #1637: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ITPRIPL1 MUTATED 0 2 4 1
ITPRIPL1 WILD-TYPE 100 70 68 120

Figure S4211.  Get High-res Image Gene #1637: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ITPRIPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0605 (Fisher's exact test), Q value = 0.26

Table S16541.  Gene #1637: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ITPRIPL1 MUTATED 1 1 4 0 1
ITPRIPL1 WILD-TYPE 58 74 70 119 37
'ITPRIPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S16542.  Gene #1637: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ITPRIPL1 MUTATED 0 2 1 1 3
ITPRIPL1 WILD-TYPE 51 74 60 70 92
'ITPRIPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S16543.  Gene #1637: 'ITPRIPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ITPRIPL1 MUTATED 2 2 0 0 0 1 1 0 1
ITPRIPL1 WILD-TYPE 67 46 39 16 53 19 20 38 49
'CCDC18 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S16544.  Gene #1638: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CCDC18 MUTATED 2 0 0 1 0
CCDC18 WILD-TYPE 30 18 46 26 23
'CCDC18 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16545.  Gene #1638: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CCDC18 MUTATED 1 1 1
CCDC18 WILD-TYPE 42 66 35
'CCDC18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S16546.  Gene #1638: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCDC18 MUTATED 1 4 6
CCDC18 WILD-TYPE 41 169 141
'CCDC18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S16547.  Gene #1638: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCDC18 MUTATED 3 3 2
CCDC18 WILD-TYPE 59 70 73
'CCDC18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S16548.  Gene #1638: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCDC18 MUTATED 0 4 3
CCDC18 WILD-TYPE 70 116 97
'CCDC18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.87

Table S16549.  Gene #1638: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCDC18 MUTATED 3 1 1 1 0 1 0 0 0
CCDC18 WILD-TYPE 38 25 29 28 39 68 20 14 22
'CCDC18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S16550.  Gene #1638: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCDC18 MUTATED 4 1 3 3
CCDC18 WILD-TYPE 96 71 69 118
'CCDC18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.63

Table S16551.  Gene #1638: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCDC18 MUTATED 2 5 1 2 1
CCDC18 WILD-TYPE 57 70 73 117 37
'CCDC18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S16552.  Gene #1638: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCDC18 MUTATED 4 1 1 3 2
CCDC18 WILD-TYPE 47 75 60 68 93
'CCDC18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S16553.  Gene #1638: 'CCDC18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCDC18 MUTATED 2 2 2 1 1 2 0 1 0
CCDC18 WILD-TYPE 67 46 37 15 52 18 21 37 50
'CUTC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S16554.  Gene #1639: 'CUTC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CUTC MUTATED 0 2 3
CUTC WILD-TYPE 42 171 144
'CUTC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S16555.  Gene #1639: 'CUTC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CUTC MUTATED 1 2 1
CUTC WILD-TYPE 61 71 74
'CUTC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S16556.  Gene #1639: 'CUTC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CUTC MUTATED 0 3 1
CUTC WILD-TYPE 70 117 99
'CUTC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S16557.  Gene #1639: 'CUTC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CUTC MUTATED 0 0 1 2 0 1 0 0 0
CUTC WILD-TYPE 41 26 29 27 39 68 20 14 22
'CUTC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S16558.  Gene #1639: 'CUTC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CUTC MUTATED 2 1 1 1
CUTC WILD-TYPE 98 71 71 120
'CUTC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S16559.  Gene #1639: 'CUTC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CUTC MUTATED 0 2 2 1 0
CUTC WILD-TYPE 59 73 72 118 38
'CUTC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.6

Table S16560.  Gene #1639: 'CUTC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CUTC MUTATED 1 2 0 2 0
CUTC WILD-TYPE 50 74 61 69 95
'CUTC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S16561.  Gene #1639: 'CUTC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CUTC MUTATED 3 0 0 0 2 0 0 0 0
CUTC WILD-TYPE 66 48 39 16 51 20 21 38 50
'GON4L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00768 (Fisher's exact test), Q value = 0.082

Table S16562.  Gene #1640: 'GON4L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GON4L MUTATED 5 0 0 1 0
GON4L WILD-TYPE 27 18 46 26 23

Figure S4212.  Get High-res Image Gene #1640: 'GON4L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GON4L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S16563.  Gene #1640: 'GON4L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GON4L MUTATED 4 1 1
GON4L WILD-TYPE 39 66 35
'GON4L MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S16564.  Gene #1640: 'GON4L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GON4L MUTATED 2 1 17
GON4L WILD-TYPE 40 172 130

Figure S4213.  Get High-res Image Gene #1640: 'GON4L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GON4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 0.16

Table S16565.  Gene #1640: 'GON4L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GON4L MUTATED 5 1 9
GON4L WILD-TYPE 57 72 66

Figure S4214.  Get High-res Image Gene #1640: 'GON4L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GON4L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S16566.  Gene #1640: 'GON4L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GON4L MUTATED 2 8 8
GON4L WILD-TYPE 68 112 92
'GON4L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.95

Table S16567.  Gene #1640: 'GON4L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GON4L MUTATED 2 2 1 3 3 5 0 2 0
GON4L WILD-TYPE 39 24 29 26 36 64 20 12 22
'GON4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0526 (Fisher's exact test), Q value = 0.25

Table S16568.  Gene #1640: 'GON4L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GON4L MUTATED 1 7 4 8
GON4L WILD-TYPE 99 65 68 113
'GON4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S16569.  Gene #1640: 'GON4L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GON4L MUTATED 2 1 9 4 4
GON4L WILD-TYPE 57 74 65 115 34

Figure S4215.  Get High-res Image Gene #1640: 'GON4L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GON4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S16570.  Gene #1640: 'GON4L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GON4L MUTATED 2 7 3 2 5
GON4L WILD-TYPE 49 69 58 69 90
'GON4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.93

Table S16571.  Gene #1640: 'GON4L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GON4L MUTATED 3 2 1 2 5 2 1 1 2
GON4L WILD-TYPE 66 46 38 14 48 18 20 37 48
'GON4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S16572.  Gene #1640: 'GON4L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GON4L MUTATED 0 1 1 0 3 0
GON4L WILD-TYPE 13 15 13 11 8 9
'GON4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0952 (Fisher's exact test), Q value = 0.34

Table S16573.  Gene #1640: 'GON4L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GON4L MUTATED 0 1 0 3 0 0 1 0 0
GON4L WILD-TYPE 11 6 7 6 8 7 10 9 5
'PLCG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S16574.  Gene #1641: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PLCG2 MUTATED 2 1 0 2 1
PLCG2 WILD-TYPE 30 17 46 25 22
'PLCG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.64

Table S16575.  Gene #1641: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PLCG2 MUTATED 3 1 2
PLCG2 WILD-TYPE 40 66 34
'PLCG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00514 (Fisher's exact test), Q value = 0.067

Table S16576.  Gene #1641: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PLCG2 MUTATED 0 4 14
PLCG2 WILD-TYPE 42 169 133

Figure S4216.  Get High-res Image Gene #1641: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PLCG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.15

Table S16577.  Gene #1641: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PLCG2 MUTATED 5 0 6
PLCG2 WILD-TYPE 57 73 69

Figure S4217.  Get High-res Image Gene #1641: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PLCG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S16578.  Gene #1641: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PLCG2 MUTATED 3 4 9
PLCG2 WILD-TYPE 67 116 91
'PLCG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S16579.  Gene #1641: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PLCG2 MUTATED 3 2 1 0 3 6 0 0 1
PLCG2 WILD-TYPE 38 24 29 29 36 63 20 14 21
'PLCG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S16580.  Gene #1641: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PLCG2 MUTATED 2 5 4 7
PLCG2 WILD-TYPE 98 67 68 114
'PLCG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.75

Table S16581.  Gene #1641: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PLCG2 MUTATED 3 2 6 4 3
PLCG2 WILD-TYPE 56 73 68 115 35
'PLCG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S16582.  Gene #1641: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PLCG2 MUTATED 1 4 3 2 7
PLCG2 WILD-TYPE 50 72 58 69 88
'PLCG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.86

Table S16583.  Gene #1641: 'PLCG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PLCG2 MUTATED 2 2 0 2 3 1 1 3 3
PLCG2 WILD-TYPE 67 46 39 14 50 19 20 35 47
'GLTSCR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S16584.  Gene #1642: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GLTSCR1 MUTATED 0 3 8
GLTSCR1 WILD-TYPE 42 170 139
'GLTSCR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00938 (Fisher's exact test), Q value = 0.091

Table S16585.  Gene #1642: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GLTSCR1 MUTATED 2 0 7
GLTSCR1 WILD-TYPE 60 73 68

Figure S4218.  Get High-res Image Gene #1642: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GLTSCR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S16586.  Gene #1642: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GLTSCR1 MUTATED 1 2 6
GLTSCR1 WILD-TYPE 69 118 94
'GLTSCR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.51

Table S16587.  Gene #1642: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GLTSCR1 MUTATED 0 1 0 1 0 6 0 0 1
GLTSCR1 WILD-TYPE 41 25 30 28 39 63 20 14 21
'GLTSCR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.15

Table S16588.  Gene #1642: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GLTSCR1 MUTATED 1 4 5 1
GLTSCR1 WILD-TYPE 99 68 67 120

Figure S4219.  Get High-res Image Gene #1642: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GLTSCR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00986 (Fisher's exact test), Q value = 0.093

Table S16589.  Gene #1642: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GLTSCR1 MUTATED 0 2 7 1 1
GLTSCR1 WILD-TYPE 59 73 67 118 37

Figure S4220.  Get High-res Image Gene #1642: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GLTSCR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 0.28

Table S16590.  Gene #1642: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GLTSCR1 MUTATED 2 6 1 0 2
GLTSCR1 WILD-TYPE 49 70 60 71 93
'GLTSCR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0341 (Fisher's exact test), Q value = 0.2

Table S16591.  Gene #1642: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GLTSCR1 MUTATED 1 2 0 3 3 0 1 1 0
GLTSCR1 WILD-TYPE 68 46 39 13 50 20 20 37 50

Figure S4221.  Get High-res Image Gene #1642: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GLTSCR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00073 (Fisher's exact test), Q value = 0.02

Table S16592.  Gene #1642: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GLTSCR1 MUTATED 0 0 0 0 4 0
GLTSCR1 WILD-TYPE 13 16 14 11 7 9

Figure S4222.  Get High-res Image Gene #1642: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GLTSCR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S16593.  Gene #1642: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GLTSCR1 MUTATED 0 0 1 2 0 0 1 0 0
GLTSCR1 WILD-TYPE 11 7 6 7 8 7 10 9 5
'OR9G4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S16594.  Gene #1643: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR9G4 MUTATED 0 3 5
OR9G4 WILD-TYPE 42 170 142
'OR9G4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.98

Table S16595.  Gene #1643: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR9G4 MUTATED 2 1 3
OR9G4 WILD-TYPE 60 72 72
'OR9G4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.91

Table S16596.  Gene #1643: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR9G4 MUTATED 2 2 4
OR9G4 WILD-TYPE 68 118 96
'OR9G4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 0.99

Table S16597.  Gene #1643: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR9G4 MUTATED 2 1 2 0 0 3 0 0 0
OR9G4 WILD-TYPE 39 25 28 29 39 66 20 14 22
'OR9G4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S16598.  Gene #1643: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR9G4 MUTATED 1 3 2 2
OR9G4 WILD-TYPE 99 69 70 119
'OR9G4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 0.95

Table S16599.  Gene #1643: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR9G4 MUTATED 2 2 2 1 1
OR9G4 WILD-TYPE 57 73 72 118 37
'OR9G4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.97

Table S16600.  Gene #1643: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR9G4 MUTATED 1 2 2 0 2
OR9G4 WILD-TYPE 50 74 59 71 93
'OR9G4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0513 (Fisher's exact test), Q value = 0.24

Table S16601.  Gene #1643: 'OR9G4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR9G4 MUTATED 2 1 0 0 1 3 0 0 0
OR9G4 WILD-TYPE 67 47 39 16 52 17 21 38 50
'NFATC2IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S16602.  Gene #1644: 'NFATC2IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NFATC2IP MUTATED 1 1 1
NFATC2IP WILD-TYPE 41 172 146
'NFATC2IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S16603.  Gene #1644: 'NFATC2IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NFATC2IP MUTATED 0 0 3
NFATC2IP WILD-TYPE 62 73 72
'NFATC2IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S16604.  Gene #1644: 'NFATC2IP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NFATC2IP MUTATED 0 2 1
NFATC2IP WILD-TYPE 70 118 99
'NFATC2IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S16605.  Gene #1644: 'NFATC2IP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NFATC2IP MUTATED 0 0 0 2 0 1 0 0 0
NFATC2IP WILD-TYPE 41 26 30 27 39 68 20 14 22
'NFATC2IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S16606.  Gene #1644: 'NFATC2IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NFATC2IP MUTATED 0 3 0 0
NFATC2IP WILD-TYPE 100 69 72 121

Figure S4223.  Get High-res Image Gene #1644: 'NFATC2IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NFATC2IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.18

Table S16607.  Gene #1644: 'NFATC2IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NFATC2IP MUTATED 0 0 3 0 0
NFATC2IP WILD-TYPE 59 75 71 119 38

Figure S4224.  Get High-res Image Gene #1644: 'NFATC2IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NFATC2IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S16608.  Gene #1644: 'NFATC2IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NFATC2IP MUTATED 0 2 1 0 0
NFATC2IP WILD-TYPE 51 74 60 71 95
'NFATC2IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00486 (Fisher's exact test), Q value = 0.065

Table S16609.  Gene #1644: 'NFATC2IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NFATC2IP MUTATED 0 1 0 2 0 0 0 0 0
NFATC2IP WILD-TYPE 69 47 39 14 53 20 21 38 50

Figure S4225.  Get High-res Image Gene #1644: 'NFATC2IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C14ORF180 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.66

Table S16610.  Gene #1645: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C14ORF180 MUTATED 1 1 2
C14ORF180 WILD-TYPE 41 172 145
'C14ORF180 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S16611.  Gene #1645: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C14ORF180 MUTATED 2 1 1
C14ORF180 WILD-TYPE 60 72 74
'C14ORF180 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.98

Table S16612.  Gene #1645: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C14ORF180 MUTATED 0 2 2
C14ORF180 WILD-TYPE 70 118 98
'C14ORF180 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S16613.  Gene #1645: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C14ORF180 MUTATED 0 0 0 2 0 2 0 0 0
C14ORF180 WILD-TYPE 41 26 30 27 39 67 20 14 22
'C14ORF180 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S16614.  Gene #1645: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C14ORF180 MUTATED 1 1 2 0
C14ORF180 WILD-TYPE 99 71 70 121
'C14ORF180 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0877 (Fisher's exact test), Q value = 0.32

Table S16615.  Gene #1645: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C14ORF180 MUTATED 0 1 3 0 0
C14ORF180 WILD-TYPE 59 74 71 119 38
'C14ORF180 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.33

Table S16616.  Gene #1645: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C14ORF180 MUTATED 0 3 0 1 0
C14ORF180 WILD-TYPE 51 73 61 70 95
'C14ORF180 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S16617.  Gene #1645: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C14ORF180 MUTATED 2 1 0 1 0 0 0 0 0
C14ORF180 WILD-TYPE 67 47 39 15 53 20 21 38 50
'C14ORF180 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S16618.  Gene #1645: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C14ORF180 MUTATED 0 0 1 0 1 1
C14ORF180 WILD-TYPE 13 16 13 11 10 8
'C14ORF180 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S16619.  Gene #1645: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C14ORF180 MUTATED 0 0 0 1 0 0 1 1 0
C14ORF180 WILD-TYPE 11 7 7 8 8 7 10 8 5
'MYLK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16620.  Gene #1646: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MYLK4 MUTATED 1 5 5
MYLK4 WILD-TYPE 41 168 142
'MYLK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S16621.  Gene #1646: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MYLK4 MUTATED 4 4 3
MYLK4 WILD-TYPE 58 69 72
'MYLK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S16622.  Gene #1646: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MYLK4 MUTATED 1 6 5
MYLK4 WILD-TYPE 69 114 95
'MYLK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S16623.  Gene #1646: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MYLK4 MUTATED 2 1 0 2 2 3 1 1 0
MYLK4 WILD-TYPE 39 25 30 27 37 66 19 13 22
'MYLK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S16624.  Gene #1646: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MYLK4 MUTATED 4 3 3 2
MYLK4 WILD-TYPE 96 69 69 119
'MYLK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S16625.  Gene #1646: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MYLK4 MUTATED 4 2 4 1 1
MYLK4 WILD-TYPE 55 73 70 118 37
'MYLK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S16626.  Gene #1646: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MYLK4 MUTATED 1 6 2 1 2
MYLK4 WILD-TYPE 50 70 59 70 93
'MYLK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S16627.  Gene #1646: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MYLK4 MUTATED 5 4 1 0 0 0 0 1 1
MYLK4 WILD-TYPE 64 44 38 16 53 20 21 37 49
'MYLK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.18

Table S16628.  Gene #1646: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MYLK4 MUTATED 0 0 0 0 1 2
MYLK4 WILD-TYPE 13 16 14 11 10 7

Figure S4226.  Get High-res Image Gene #1646: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MYLK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16629.  Gene #1646: 'MYLK4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MYLK4 MUTATED 1 0 0 0 0 0 1 1 0
MYLK4 WILD-TYPE 10 7 7 9 8 7 10 8 5
'CENPJ MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S16630.  Gene #1647: 'CENPJ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CENPJ MUTATED 3 0 0 2 1
CENPJ WILD-TYPE 29 18 46 25 22
'CENPJ MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.88

Table S16631.  Gene #1647: 'CENPJ MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CENPJ MUTATED 3 2 1
CENPJ WILD-TYPE 40 65 35
'CENPJ MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S16632.  Gene #1647: 'CENPJ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CENPJ MUTATED 0 2 19
CENPJ WILD-TYPE 42 171 128

Figure S4227.  Get High-res Image Gene #1647: 'CENPJ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CENPJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S16633.  Gene #1647: 'CENPJ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CENPJ MUTATED 7 2 5
CENPJ WILD-TYPE 55 71 70
'CENPJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.19

Table S16634.  Gene #1647: 'CENPJ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CENPJ MUTATED 4 3 11
CENPJ WILD-TYPE 66 117 89

Figure S4228.  Get High-res Image Gene #1647: 'CENPJ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CENPJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S16635.  Gene #1647: 'CENPJ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CENPJ MUTATED 3 0 2 0 1 9 1 2 0
CENPJ WILD-TYPE 38 26 28 29 38 60 19 12 22
'CENPJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.15

Table S16636.  Gene #1647: 'CENPJ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CENPJ MUTATED 1 7 7 6
CENPJ WILD-TYPE 99 65 65 115

Figure S4229.  Get High-res Image Gene #1647: 'CENPJ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CENPJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0878 (Fisher's exact test), Q value = 0.32

Table S16637.  Gene #1647: 'CENPJ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CENPJ MUTATED 3 2 9 4 3
CENPJ WILD-TYPE 56 73 65 115 35
'CENPJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0467 (Fisher's exact test), Q value = 0.23

Table S16638.  Gene #1647: 'CENPJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CENPJ MUTATED 0 9 4 2 5
CENPJ WILD-TYPE 51 67 57 69 90

Figure S4230.  Get High-res Image Gene #1647: 'CENPJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CENPJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 0.95

Table S16639.  Gene #1647: 'CENPJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CENPJ MUTATED 5 3 1 3 2 1 1 2 2
CENPJ WILD-TYPE 64 45 38 13 51 19 20 36 48
'CENPJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.57

Table S16640.  Gene #1647: 'CENPJ MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CENPJ MUTATED 0 1 2 1 3 0
CENPJ WILD-TYPE 13 15 12 10 8 9
'CENPJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S16641.  Gene #1647: 'CENPJ MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CENPJ MUTATED 0 1 1 0 2 1 2 0 0
CENPJ WILD-TYPE 11 6 6 9 6 6 9 9 5
'CHMP4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 0.34

Table S16642.  Gene #1648: 'CHMP4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CHMP4B MUTATED 1 0 2
CHMP4B WILD-TYPE 41 173 145
'CHMP4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.92

Table S16643.  Gene #1648: 'CHMP4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CHMP4B MUTATED 0 1 2
CHMP4B WILD-TYPE 70 119 98
'CHMP4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S16644.  Gene #1648: 'CHMP4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CHMP4B MUTATED 0 0 0 0 1 2 0 0 0
CHMP4B WILD-TYPE 41 26 30 29 38 67 20 14 22
'CHMP4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S16645.  Gene #1648: 'CHMP4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CHMP4B MUTATED 0 2 0 1
CHMP4B WILD-TYPE 100 70 72 120
'CHMP4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.62

Table S16646.  Gene #1648: 'CHMP4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CHMP4B MUTATED 0 1 1 0 1
CHMP4B WILD-TYPE 59 74 73 119 37
'CHMP4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.63

Table S16647.  Gene #1648: 'CHMP4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CHMP4B MUTATED 0 2 0 1 0
CHMP4B WILD-TYPE 51 74 61 70 95
'CHMP4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0822 (Fisher's exact test), Q value = 0.31

Table S16648.  Gene #1648: 'CHMP4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CHMP4B MUTATED 0 0 0 1 2 0 0 0 0
CHMP4B WILD-TYPE 69 48 39 15 51 20 21 38 50
'C20ORF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S16649.  Gene #1649: 'C20ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C20ORF43 MUTATED 0 0 3
C20ORF43 WILD-TYPE 42 173 144
'C20ORF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S16650.  Gene #1649: 'C20ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C20ORF43 MUTATED 2 0 1
C20ORF43 WILD-TYPE 60 73 74
'C20ORF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.98

Table S16651.  Gene #1649: 'C20ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C20ORF43 MUTATED 0 1 1 1
C20ORF43 WILD-TYPE 100 71 71 120
'C20ORF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16652.  Gene #1649: 'C20ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C20ORF43 MUTATED 0 1 1 1 0
C20ORF43 WILD-TYPE 59 74 73 118 38
'C20ORF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S16653.  Gene #1649: 'C20ORF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C20ORF43 MUTATED 0 2 0 0 1
C20ORF43 WILD-TYPE 51 74 61 71 94
'C20ORF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S16654.  Gene #1649: 'C20ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C20ORF43 MUTATED 2 0 0 0 0 0 0 0 1
C20ORF43 WILD-TYPE 67 48 39 16 53 20 21 38 49
'CIZ1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.9

Table S16655.  Gene #1650: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CIZ1 MUTATED 3 0 1 1 1
CIZ1 WILD-TYPE 29 18 45 26 22
'CIZ1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S16656.  Gene #1650: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CIZ1 MUTATED 2 2 2
CIZ1 WILD-TYPE 41 65 34
'CIZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S16657.  Gene #1650: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CIZ1 MUTATED 2 4 8
CIZ1 WILD-TYPE 40 169 139
'CIZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S16658.  Gene #1650: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CIZ1 MUTATED 1 2 5
CIZ1 WILD-TYPE 61 71 70
'CIZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S16659.  Gene #1650: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CIZ1 MUTATED 2 7 3
CIZ1 WILD-TYPE 68 113 97
'CIZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S16660.  Gene #1650: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CIZ1 MUTATED 1 0 2 4 2 2 1 0 0
CIZ1 WILD-TYPE 40 26 28 25 37 67 19 14 22
'CIZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S16661.  Gene #1650: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CIZ1 MUTATED 1 5 2 6
CIZ1 WILD-TYPE 99 67 70 115
'CIZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0635 (Fisher's exact test), Q value = 0.27

Table S16662.  Gene #1650: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CIZ1 MUTATED 0 2 6 3 3
CIZ1 WILD-TYPE 59 73 68 116 35
'CIZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0836 (Fisher's exact test), Q value = 0.31

Table S16663.  Gene #1650: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CIZ1 MUTATED 2 6 0 1 6
CIZ1 WILD-TYPE 49 70 61 70 89
'CIZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.92

Table S16664.  Gene #1650: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CIZ1 MUTATED 2 2 0 2 2 1 1 2 3
CIZ1 WILD-TYPE 67 46 39 14 51 19 20 36 47
'CIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S16665.  Gene #1650: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CIZ1 MUTATED 0 1 0 0 2 0
CIZ1 WILD-TYPE 13 15 14 11 9 9
'CIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S16666.  Gene #1650: 'CIZ1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CIZ1 MUTATED 0 0 0 2 0 0 1 0 0
CIZ1 WILD-TYPE 11 7 7 7 8 7 10 9 5
'ZNF416 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00228 (Fisher's exact test), Q value = 0.04

Table S16667.  Gene #1651: 'ZNF416 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF416 MUTATED 0 0 8
ZNF416 WILD-TYPE 42 173 139

Figure S4231.  Get High-res Image Gene #1651: 'ZNF416 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF416 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0797 (Fisher's exact test), Q value = 0.31

Table S16668.  Gene #1651: 'ZNF416 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF416 MUTATED 4 0 2
ZNF416 WILD-TYPE 58 73 73
'ZNF416 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.91

Table S16669.  Gene #1651: 'ZNF416 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF416 MUTATED 2 2 4
ZNF416 WILD-TYPE 68 118 96
'ZNF416 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S16670.  Gene #1651: 'ZNF416 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF416 MUTATED 1 0 2 0 0 3 2 0 0
ZNF416 WILD-TYPE 40 26 28 29 39 66 18 14 22
'ZNF416 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 0.28

Table S16671.  Gene #1651: 'ZNF416 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF416 MUTATED 0 2 4 2
ZNF416 WILD-TYPE 100 70 68 119
'ZNF416 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.58

Table S16672.  Gene #1651: 'ZNF416 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF416 MUTATED 1 1 4 1 1
ZNF416 WILD-TYPE 58 74 70 118 37
'ZNF416 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S16673.  Gene #1651: 'ZNF416 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF416 MUTATED 0 4 1 0 3
ZNF416 WILD-TYPE 51 72 60 71 92
'ZNF416 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S16674.  Gene #1651: 'ZNF416 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF416 MUTATED 0 3 0 1 1 1 0 1 1
ZNF416 WILD-TYPE 69 45 39 15 52 19 21 37 49
'ZNF416 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00603 (Fisher's exact test), Q value = 0.073

Table S16675.  Gene #1651: 'ZNF416 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF416 MUTATED 0 0 0 0 3 0
ZNF416 WILD-TYPE 13 16 14 11 8 9

Figure S4232.  Get High-res Image Gene #1651: 'ZNF416 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ZNF416 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S16676.  Gene #1651: 'ZNF416 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF416 MUTATED 0 0 0 0 1 0 2 0 0
ZNF416 WILD-TYPE 11 7 7 9 7 7 9 9 5
'RBM16 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0742 (Fisher's exact test), Q value = 0.3

Table S16677.  Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RBM16 MUTATED 3 0 0 2 0
RBM16 WILD-TYPE 29 18 46 25 23
'RBM16 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.28

Table S16678.  Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RBM16 MUTATED 4 1 0
RBM16 WILD-TYPE 39 66 36
'RBM16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.18

Table S16679.  Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RBM16 MUTATED 1 3 11
RBM16 WILD-TYPE 41 170 136

Figure S4233.  Get High-res Image Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBM16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S16680.  Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RBM16 MUTATED 4 1 6
RBM16 WILD-TYPE 58 72 69
'RBM16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S16681.  Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RBM16 MUTATED 0 7 5
RBM16 WILD-TYPE 70 113 95
'RBM16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S16682.  Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RBM16 MUTATED 1 1 1 4 2 2 0 0 1
RBM16 WILD-TYPE 40 25 29 25 37 67 20 14 21
'RBM16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.92

Table S16683.  Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RBM16 MUTATED 3 5 2 5
RBM16 WILD-TYPE 97 67 70 116
'RBM16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.13

Table S16684.  Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RBM16 MUTATED 2 2 6 1 4
RBM16 WILD-TYPE 57 73 68 118 34

Figure S4234.  Get High-res Image Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBM16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.94

Table S16685.  Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RBM16 MUTATED 2 5 2 1 4
RBM16 WILD-TYPE 49 71 59 70 91
'RBM16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.1

Table S16686.  Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RBM16 MUTATED 0 2 0 3 4 1 0 3 1
RBM16 WILD-TYPE 69 46 39 13 49 19 21 35 49

Figure S4235.  Get High-res Image Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RBM16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.17

Table S16687.  Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RBM16 MUTATED 0 0 1 0 3 0
RBM16 WILD-TYPE 13 16 13 11 8 9

Figure S4236.  Get High-res Image Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RBM16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 0.17

Table S16688.  Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RBM16 MUTATED 0 0 0 3 1 0 0 0 0
RBM16 WILD-TYPE 11 7 7 6 7 7 11 9 5

Figure S4237.  Get High-res Image Gene #1652: 'RBM16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MORC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S16689.  Gene #1653: 'MORC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MORC1 MUTATED 3 1 0 1 0
MORC1 WILD-TYPE 29 17 46 26 23
'MORC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S16690.  Gene #1653: 'MORC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MORC1 MUTATED 2 1 2
MORC1 WILD-TYPE 41 66 34
'MORC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.64

Table S16691.  Gene #1653: 'MORC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MORC1 MUTATED 1 4 8
MORC1 WILD-TYPE 41 169 139
'MORC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S16692.  Gene #1653: 'MORC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MORC1 MUTATED 5 2 1
MORC1 WILD-TYPE 57 71 74
'MORC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00401 (Fisher's exact test), Q value = 0.057

Table S16693.  Gene #1653: 'MORC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MORC1 MUTATED 0 2 9
MORC1 WILD-TYPE 70 118 91

Figure S4238.  Get High-res Image Gene #1653: 'MORC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MORC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S16694.  Gene #1653: 'MORC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MORC1 MUTATED 3 0 1 1 0 6 0 0 0
MORC1 WILD-TYPE 38 26 29 28 39 63 20 14 22
'MORC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16695.  Gene #1653: 'MORC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MORC1 MUTATED 4 2 2 5
MORC1 WILD-TYPE 96 70 70 116
'MORC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S16696.  Gene #1653: 'MORC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MORC1 MUTATED 3 2 2 5 1
MORC1 WILD-TYPE 56 73 72 114 37
'MORC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S16697.  Gene #1653: 'MORC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MORC1 MUTATED 2 3 2 1 4
MORC1 WILD-TYPE 49 73 59 70 91
'MORC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S16698.  Gene #1653: 'MORC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MORC1 MUTATED 0 3 1 1 4 1 0 1 1
MORC1 WILD-TYPE 69 45 38 15 49 19 21 37 49
'ROR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.63

Table S16699.  Gene #1654: 'ROR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ROR1 MUTATED 3 0 2 0 0
ROR1 WILD-TYPE 29 18 44 27 23
'ROR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S16700.  Gene #1654: 'ROR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ROR1 MUTATED 2 2 1
ROR1 WILD-TYPE 41 65 35
'ROR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0801 (Fisher's exact test), Q value = 0.31

Table S16701.  Gene #1654: 'ROR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ROR1 MUTATED 1 6 13
ROR1 WILD-TYPE 41 167 134
'ROR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S16702.  Gene #1654: 'ROR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ROR1 MUTATED 6 3 5
ROR1 WILD-TYPE 56 70 70
'ROR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S16703.  Gene #1654: 'ROR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ROR1 MUTATED 2 4 9
ROR1 WILD-TYPE 68 116 91
'ROR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S16704.  Gene #1654: 'ROR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ROR1 MUTATED 1 1 1 1 2 9 0 0 0
ROR1 WILD-TYPE 40 25 29 28 37 60 20 14 22
'ROR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S16705.  Gene #1654: 'ROR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ROR1 MUTATED 4 7 3 6
ROR1 WILD-TYPE 96 65 69 115
'ROR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0946 (Fisher's exact test), Q value = 0.34

Table S16706.  Gene #1654: 'ROR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ROR1 MUTATED 1 6 7 3 3
ROR1 WILD-TYPE 58 69 67 116 35
'ROR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.37

Table S16707.  Gene #1654: 'ROR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ROR1 MUTATED 1 9 2 2 5
ROR1 WILD-TYPE 50 67 59 69 90
'ROR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S16708.  Gene #1654: 'ROR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ROR1 MUTATED 3 4 0 3 2 2 0 3 2
ROR1 WILD-TYPE 66 44 39 13 51 18 21 35 48
'HSPA4L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0528 (Fisher's exact test), Q value = 0.25

Table S16709.  Gene #1655: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HSPA4L MUTATED 3 0 0 0 0
HSPA4L WILD-TYPE 29 18 46 27 23
'HSPA4L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0385 (Fisher's exact test), Q value = 0.21

Table S16710.  Gene #1655: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HSPA4L MUTATED 3 0 0
HSPA4L WILD-TYPE 40 67 36

Figure S4239.  Get High-res Image Gene #1655: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HSPA4L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0387 (Fisher's exact test), Q value = 0.21

Table S16711.  Gene #1655: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HSPA4L MUTATED 0 1 7
HSPA4L WILD-TYPE 42 172 140

Figure S4240.  Get High-res Image Gene #1655: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HSPA4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S16712.  Gene #1655: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HSPA4L MUTATED 2 1 2
HSPA4L WILD-TYPE 60 72 73
'HSPA4L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S16713.  Gene #1655: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HSPA4L MUTATED 1 2 3
HSPA4L WILD-TYPE 69 118 97
'HSPA4L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S16714.  Gene #1655: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HSPA4L MUTATED 2 0 0 0 1 2 0 0 1
HSPA4L WILD-TYPE 39 26 30 29 38 67 20 14 21
'HSPA4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16715.  Gene #1655: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HSPA4L MUTATED 2 2 1 3
HSPA4L WILD-TYPE 98 70 71 118
'HSPA4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.17

Table S16716.  Gene #1655: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HSPA4L MUTATED 2 2 1 0 3
HSPA4L WILD-TYPE 57 73 73 119 35

Figure S4241.  Get High-res Image Gene #1655: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HSPA4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.65

Table S16717.  Gene #1655: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HSPA4L MUTATED 0 2 2 0 4
HSPA4L WILD-TYPE 51 74 59 71 91
'HSPA4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S16718.  Gene #1655: 'HSPA4L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HSPA4L MUTATED 0 2 0 1 1 0 0 3 1
HSPA4L WILD-TYPE 69 46 39 15 52 20 21 35 49
'GSG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.19

Table S16719.  Gene #1656: 'GSG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GSG2 MUTATED 1 0 5
GSG2 WILD-TYPE 41 173 142

Figure S4242.  Get High-res Image Gene #1656: 'GSG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GSG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.2

Table S16720.  Gene #1656: 'GSG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GSG2 MUTATED 0 0 4
GSG2 WILD-TYPE 62 73 71

Figure S4243.  Get High-res Image Gene #1656: 'GSG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GSG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S16721.  Gene #1656: 'GSG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GSG2 MUTATED 2 2 1
GSG2 WILD-TYPE 68 118 99
'GSG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.74

Table S16722.  Gene #1656: 'GSG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GSG2 MUTATED 0 0 0 2 1 1 1 0 0
GSG2 WILD-TYPE 41 26 30 27 38 68 19 14 22
'GSG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.47

Table S16723.  Gene #1656: 'GSG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GSG2 MUTATED 0 3 1 2
GSG2 WILD-TYPE 100 69 71 119
'GSG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S16724.  Gene #1656: 'GSG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GSG2 MUTATED 0 1 3 2 0
GSG2 WILD-TYPE 59 74 71 117 38
'GSG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.18

Table S16725.  Gene #1656: 'GSG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GSG2 MUTATED 0 4 0 2 0
GSG2 WILD-TYPE 51 72 61 69 95

Figure S4244.  Get High-res Image Gene #1656: 'GSG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GSG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S16726.  Gene #1656: 'GSG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GSG2 MUTATED 1 1 0 1 2 0 0 0 1
GSG2 WILD-TYPE 68 47 39 15 51 20 21 38 49
'MIPEP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S16727.  Gene #1657: 'MIPEP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MIPEP MUTATED 0 2 6
MIPEP WILD-TYPE 42 171 141
'MIPEP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S16728.  Gene #1657: 'MIPEP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MIPEP MUTATED 2 0 3
MIPEP WILD-TYPE 60 73 72
'MIPEP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S16729.  Gene #1657: 'MIPEP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MIPEP MUTATED 1 4 3
MIPEP WILD-TYPE 69 116 97
'MIPEP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.98

Table S16730.  Gene #1657: 'MIPEP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MIPEP MUTATED 1 2 1 0 1 1 1 0 1
MIPEP WILD-TYPE 40 24 29 29 38 68 19 14 21
'MIPEP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S16731.  Gene #1657: 'MIPEP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MIPEP MUTATED 0 2 2 4
MIPEP WILD-TYPE 100 70 70 117
'MIPEP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0431 (Fisher's exact test), Q value = 0.22

Table S16732.  Gene #1657: 'MIPEP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MIPEP MUTATED 2 0 2 1 3
MIPEP WILD-TYPE 57 75 72 118 35

Figure S4245.  Get High-res Image Gene #1657: 'MIPEP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MIPEP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S16733.  Gene #1657: 'MIPEP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MIPEP MUTATED 1 3 0 0 4
MIPEP WILD-TYPE 50 73 61 71 91
'MIPEP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S16734.  Gene #1657: 'MIPEP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MIPEP MUTATED 2 2 0 0 0 0 0 3 1
MIPEP WILD-TYPE 67 46 39 16 53 20 21 35 49
'CENPA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S16735.  Gene #1658: 'CENPA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CENPA MUTATED 2 0 0 2 0
CENPA WILD-TYPE 30 18 46 25 23
'CENPA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S16736.  Gene #1658: 'CENPA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CENPA MUTATED 3 1 0
CENPA WILD-TYPE 40 66 36
'CENPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.19

Table S16737.  Gene #1658: 'CENPA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CENPA MUTATED 0 0 5
CENPA WILD-TYPE 42 173 142

Figure S4246.  Get High-res Image Gene #1658: 'CENPA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CENPA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S16738.  Gene #1658: 'CENPA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CENPA MUTATED 0 3 2
CENPA WILD-TYPE 70 117 98
'CENPA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S16739.  Gene #1658: 'CENPA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CENPA MUTATED 0 0 1 0 2 2 0 0 0
CENPA WILD-TYPE 41 26 29 29 37 67 20 14 22
'CENPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S16740.  Gene #1658: 'CENPA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CENPA MUTATED 0 1 0 4
CENPA WILD-TYPE 100 71 72 117
'CENPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S16741.  Gene #1658: 'CENPA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CENPA MUTATED 0 1 0 2 2
CENPA WILD-TYPE 59 74 74 117 36
'CENPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.22

Table S16742.  Gene #1658: 'CENPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CENPA MUTATED 0 0 0 0 4
CENPA WILD-TYPE 51 76 61 71 91

Figure S4247.  Get High-res Image Gene #1658: 'CENPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CENPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S16743.  Gene #1658: 'CENPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CENPA MUTATED 0 0 0 0 0 1 0 2 1
CENPA WILD-TYPE 69 48 39 16 53 19 21 36 49
'OTUD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0745 (Fisher's exact test), Q value = 0.3

Table S16744.  Gene #1659: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OTUD4 MUTATED 3 0 0 2 0
OTUD4 WILD-TYPE 29 18 46 25 23
'OTUD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0661 (Fisher's exact test), Q value = 0.28

Table S16745.  Gene #1659: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OTUD4 MUTATED 4 1 0
OTUD4 WILD-TYPE 39 66 36
'OTUD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00272 (Fisher's exact test), Q value = 0.044

Table S16746.  Gene #1659: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OTUD4 MUTATED 0 4 15
OTUD4 WILD-TYPE 42 169 132

Figure S4248.  Get High-res Image Gene #1659: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OTUD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S16747.  Gene #1659: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OTUD4 MUTATED 5 4 5
OTUD4 WILD-TYPE 57 69 70
'OTUD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.77

Table S16748.  Gene #1659: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OTUD4 MUTATED 2 9 6
OTUD4 WILD-TYPE 68 111 94
'OTUD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.93

Table S16749.  Gene #1659: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OTUD4 MUTATED 1 2 3 3 3 5 0 0 0
OTUD4 WILD-TYPE 40 24 27 26 36 64 20 14 22
'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S16750.  Gene #1659: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OTUD4 MUTATED 3 8 2 6
OTUD4 WILD-TYPE 97 64 70 115
'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00572 (Fisher's exact test), Q value = 0.071

Table S16751.  Gene #1659: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OTUD4 MUTATED 0 6 7 2 4
OTUD4 WILD-TYPE 59 69 67 117 34

Figure S4249.  Get High-res Image Gene #1659: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 0.17

Table S16752.  Gene #1659: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OTUD4 MUTATED 1 9 1 1 6
OTUD4 WILD-TYPE 50 67 60 70 89

Figure S4250.  Get High-res Image Gene #1659: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.67

Table S16753.  Gene #1659: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OTUD4 MUTATED 4 1 1 3 3 2 0 2 2
OTUD4 WILD-TYPE 65 47 38 13 50 18 21 36 48
'CASC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S16754.  Gene #1660: 'CASC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CASC4 MUTATED 0 1 4
CASC4 WILD-TYPE 42 172 143
'CASC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16755.  Gene #1660: 'CASC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CASC4 MUTATED 1 1 1
CASC4 WILD-TYPE 61 72 74
'CASC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.7

Table S16756.  Gene #1660: 'CASC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CASC4 MUTATED 0 2 3
CASC4 WILD-TYPE 70 118 97
'CASC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S16757.  Gene #1660: 'CASC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CASC4 MUTATED 1 1 1 0 0 2 0 0 0
CASC4 WILD-TYPE 40 25 29 29 39 67 20 14 22
'CASC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16758.  Gene #1660: 'CASC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CASC4 MUTATED 1 1 1 2
CASC4 WILD-TYPE 99 71 71 119
'CASC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S16759.  Gene #1660: 'CASC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CASC4 MUTATED 1 1 0 2 1
CASC4 WILD-TYPE 58 74 74 117 37
'CASC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.88

Table S16760.  Gene #1660: 'CASC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CASC4 MUTATED 0 1 1 0 3
CASC4 WILD-TYPE 51 75 60 71 92
'CASC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0435 (Fisher's exact test), Q value = 0.22

Table S16761.  Gene #1660: 'CASC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CASC4 MUTATED 0 0 2 0 0 1 0 2 0
CASC4 WILD-TYPE 69 48 37 16 53 19 21 36 50

Figure S4251.  Get High-res Image Gene #1660: 'CASC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OR2F2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S16762.  Gene #1661: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR2F2 MUTATED 0 2 5
OR2F2 WILD-TYPE 42 171 142
'OR2F2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.21

Table S16763.  Gene #1661: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR2F2 MUTATED 4 0 1
OR2F2 WILD-TYPE 58 73 74

Figure S4252.  Get High-res Image Gene #1661: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'OR2F2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S16764.  Gene #1661: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR2F2 MUTATED 1 1 3
OR2F2 WILD-TYPE 69 119 97
'OR2F2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S16765.  Gene #1661: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR2F2 MUTATED 1 0 0 1 0 2 0 0 1
OR2F2 WILD-TYPE 40 26 30 28 39 67 20 14 21
'OR2F2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S16766.  Gene #1661: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR2F2 MUTATED 1 0 4 2
OR2F2 WILD-TYPE 99 72 68 119
'OR2F2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S16767.  Gene #1661: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR2F2 MUTATED 2 0 3 0 2
OR2F2 WILD-TYPE 57 75 71 119 36

Figure S4253.  Get High-res Image Gene #1661: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR2F2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.71

Table S16768.  Gene #1661: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR2F2 MUTATED 1 1 3 0 2
OR2F2 WILD-TYPE 50 75 58 71 93
'OR2F2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0651 (Fisher's exact test), Q value = 0.28

Table S16769.  Gene #1661: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR2F2 MUTATED 0 4 0 0 1 0 1 1 0
OR2F2 WILD-TYPE 69 44 39 16 52 20 20 37 50
'OR2F2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S16770.  Gene #1661: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR2F2 MUTATED 0 1 0 0 2 0
OR2F2 WILD-TYPE 13 15 14 11 9 9
'OR2F2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S16771.  Gene #1661: 'OR2F2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR2F2 MUTATED 0 1 0 1 0 0 1 0 0
OR2F2 WILD-TYPE 11 6 7 8 8 7 10 9 5
'MPZL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0998 (Fisher's exact test), Q value = 0.34

Table S16772.  Gene #1662: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MPZL1 MUTATED 2 1 4
MPZL1 WILD-TYPE 40 172 143
'MPZL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.98

Table S16773.  Gene #1662: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MPZL1 MUTATED 2 1 3
MPZL1 WILD-TYPE 60 72 72
'MPZL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.78

Table S16774.  Gene #1662: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MPZL1 MUTATED 0 3 3
MPZL1 WILD-TYPE 70 117 97
'MPZL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S16775.  Gene #1662: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MPZL1 MUTATED 0 0 1 1 1 3 0 0 0
MPZL1 WILD-TYPE 41 26 29 28 38 66 20 14 22
'MPZL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S16776.  Gene #1662: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MPZL1 MUTATED 2 2 1 2
MPZL1 WILD-TYPE 98 70 71 119
'MPZL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0329 (Fisher's exact test), Q value = 0.19

Table S16777.  Gene #1662: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MPZL1 MUTATED 0 2 3 0 2
MPZL1 WILD-TYPE 59 73 71 119 36

Figure S4254.  Get High-res Image Gene #1662: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MPZL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.55

Table S16778.  Gene #1662: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MPZL1 MUTATED 0 4 0 1 2
MPZL1 WILD-TYPE 51 72 61 70 93
'MPZL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0788 (Fisher's exact test), Q value = 0.3

Table S16779.  Gene #1662: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MPZL1 MUTATED 2 1 0 2 0 0 0 2 0
MPZL1 WILD-TYPE 67 47 39 14 53 20 21 36 50
'MPZL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S16780.  Gene #1662: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MPZL1 MUTATED 1 0 1 0 1 0
MPZL1 WILD-TYPE 12 16 13 11 10 9
'MPZL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S16781.  Gene #1662: 'MPZL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MPZL1 MUTATED 0 0 0 1 1 0 1 0 0
MPZL1 WILD-TYPE 11 7 7 8 7 7 10 9 5
'VN1R4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0625 (Fisher's exact test), Q value = 0.27

Table S16782.  Gene #1663: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
VN1R4 MUTATED 1 0 4
VN1R4 WILD-TYPE 41 173 143
'VN1R4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S16783.  Gene #1663: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
VN1R4 MUTATED 3 0 1
VN1R4 WILD-TYPE 59 73 74
'VN1R4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S16784.  Gene #1663: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
VN1R4 MUTATED 1 1 3
VN1R4 WILD-TYPE 69 119 97
'VN1R4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S16785.  Gene #1663: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
VN1R4 MUTATED 1 0 1 0 1 1 1 0 0
VN1R4 WILD-TYPE 40 26 29 29 38 68 19 14 22
'VN1R4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S16786.  Gene #1663: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
VN1R4 MUTATED 0 1 3 2
VN1R4 WILD-TYPE 100 71 69 119
'VN1R4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.62

Table S16787.  Gene #1663: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
VN1R4 MUTATED 2 0 2 1 1
VN1R4 WILD-TYPE 57 75 72 118 37
'VN1R4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S16788.  Gene #1663: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
VN1R4 MUTATED 0 2 2 0 2
VN1R4 WILD-TYPE 51 74 59 71 93
'VN1R4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S16789.  Gene #1663: 'VN1R4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
VN1R4 MUTATED 0 2 0 1 1 1 0 1 0
VN1R4 WILD-TYPE 69 46 39 15 52 19 21 37 50
'KIF14 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S16790.  Gene #1664: 'KIF14 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIF14 MUTATED 2 0 0 2 0
KIF14 WILD-TYPE 30 18 46 25 23
'KIF14 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S16791.  Gene #1664: 'KIF14 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIF14 MUTATED 3 1 0
KIF14 WILD-TYPE 40 66 36
'KIF14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.13

Table S16792.  Gene #1664: 'KIF14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIF14 MUTATED 2 1 8
KIF14 WILD-TYPE 40 172 139

Figure S4255.  Get High-res Image Gene #1664: 'KIF14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIF14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.62

Table S16793.  Gene #1664: 'KIF14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIF14 MUTATED 4 1 2
KIF14 WILD-TYPE 58 72 73
'KIF14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16794.  Gene #1664: 'KIF14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIF14 MUTATED 2 3 3
KIF14 WILD-TYPE 68 117 97
'KIF14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S16795.  Gene #1664: 'KIF14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIF14 MUTATED 1 1 1 1 1 1 0 1 1
KIF14 WILD-TYPE 40 25 29 28 38 68 20 13 21
'KIF14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S16796.  Gene #1664: 'KIF14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIF14 MUTATED 1 2 3 5
KIF14 WILD-TYPE 99 70 69 116
'KIF14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0651 (Fisher's exact test), Q value = 0.28

Table S16797.  Gene #1664: 'KIF14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIF14 MUTATED 3 0 3 2 3
KIF14 WILD-TYPE 56 75 71 117 35
'KIF14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S16798.  Gene #1664: 'KIF14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIF14 MUTATED 1 1 4 0 4
KIF14 WILD-TYPE 50 75 57 71 91
'KIF14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.88

Table S16799.  Gene #1664: 'KIF14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIF14 MUTATED 3 1 0 0 1 2 0 2 1
KIF14 WILD-TYPE 66 47 39 16 52 18 21 36 49
'KIF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S16800.  Gene #1664: 'KIF14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIF14 MUTATED 0 1 1 0 1 0
KIF14 WILD-TYPE 13 15 13 11 10 9
'KIF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S16801.  Gene #1664: 'KIF14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIF14 MUTATED 1 0 0 1 1 0 0 0 0
KIF14 WILD-TYPE 10 7 7 8 7 7 11 9 5
'TRIM33 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S16802.  Gene #1665: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TRIM33 MUTATED 2 0 0 2 0
TRIM33 WILD-TYPE 30 18 46 25 23
'TRIM33 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S16803.  Gene #1665: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TRIM33 MUTATED 3 1 0
TRIM33 WILD-TYPE 40 66 36
'TRIM33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 0.27

Table S16804.  Gene #1665: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRIM33 MUTATED 2 3 10
TRIM33 WILD-TYPE 40 170 137
'TRIM33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.83

Table S16805.  Gene #1665: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRIM33 MUTATED 2 3 6
TRIM33 WILD-TYPE 60 70 69
'TRIM33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0564 (Fisher's exact test), Q value = 0.25

Table S16806.  Gene #1665: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRIM33 MUTATED 0 8 7
TRIM33 WILD-TYPE 70 112 93
'TRIM33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S16807.  Gene #1665: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRIM33 MUTATED 0 0 1 3 2 6 3 0 0
TRIM33 WILD-TYPE 41 26 29 26 37 63 17 14 22
'TRIM33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.15

Table S16808.  Gene #1665: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRIM33 MUTATED 3 8 1 3
TRIM33 WILD-TYPE 97 64 71 118

Figure S4256.  Get High-res Image Gene #1665: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TRIM33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00171 (Fisher's exact test), Q value = 0.034

Table S16809.  Gene #1665: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRIM33 MUTATED 0 3 8 1 3
TRIM33 WILD-TYPE 59 72 66 118 35

Figure S4257.  Get High-res Image Gene #1665: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRIM33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.14

Table S16810.  Gene #1665: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRIM33 MUTATED 1 9 1 1 3
TRIM33 WILD-TYPE 50 67 60 70 92

Figure S4258.  Get High-res Image Gene #1665: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TRIM33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00169 (Fisher's exact test), Q value = 0.034

Table S16811.  Gene #1665: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRIM33 MUTATED 1 1 2 5 3 1 0 2 0
TRIM33 WILD-TYPE 68 47 37 11 50 19 21 36 50

Figure S4259.  Get High-res Image Gene #1665: 'TRIM33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'XRCC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 0.31

Table S16812.  Gene #1666: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
XRCC6 MUTATED 0 1 6
XRCC6 WILD-TYPE 42 172 141
'XRCC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S16813.  Gene #1666: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
XRCC6 MUTATED 2 1 2
XRCC6 WILD-TYPE 60 72 73
'XRCC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S16814.  Gene #1666: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
XRCC6 MUTATED 0 3 4
XRCC6 WILD-TYPE 70 117 96
'XRCC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S16815.  Gene #1666: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
XRCC6 MUTATED 1 0 1 0 1 4 0 0 0
XRCC6 WILD-TYPE 40 26 29 29 38 65 20 14 22
'XRCC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.45

Table S16816.  Gene #1666: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
XRCC6 MUTATED 0 3 2 2
XRCC6 WILD-TYPE 100 69 70 119
'XRCC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S16817.  Gene #1666: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
XRCC6 MUTATED 0 0 5 1 1
XRCC6 WILD-TYPE 59 75 69 118 37

Figure S4260.  Get High-res Image Gene #1666: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'XRCC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S16818.  Gene #1666: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
XRCC6 MUTATED 0 3 1 1 2
XRCC6 WILD-TYPE 51 73 60 70 93
'XRCC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0545 (Fisher's exact test), Q value = 0.25

Table S16819.  Gene #1666: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
XRCC6 MUTATED 1 2 0 2 0 1 0 1 0
XRCC6 WILD-TYPE 68 46 39 14 53 19 21 37 50
'GTDC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S16820.  Gene #1667: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GTDC1 MUTATED 2 0 0 1 0
GTDC1 WILD-TYPE 30 18 46 26 23
'GTDC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0382 (Fisher's exact test), Q value = 0.21

Table S16821.  Gene #1667: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GTDC1 MUTATED 3 0 0
GTDC1 WILD-TYPE 40 67 36

Figure S4261.  Get High-res Image Gene #1667: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GTDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.2

Table S16822.  Gene #1667: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GTDC1 MUTATED 1 1 7
GTDC1 WILD-TYPE 41 172 140

Figure S4262.  Get High-res Image Gene #1667: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GTDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S16823.  Gene #1667: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GTDC1 MUTATED 3 1 2
GTDC1 WILD-TYPE 59 72 73
'GTDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S16824.  Gene #1667: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GTDC1 MUTATED 1 2 5
GTDC1 WILD-TYPE 69 118 95
'GTDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.82

Table S16825.  Gene #1667: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GTDC1 MUTATED 2 0 0 2 0 4 0 0 0
GTDC1 WILD-TYPE 39 26 30 27 39 65 20 14 22
'GTDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S16826.  Gene #1667: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GTDC1 MUTATED 1 2 3 3
GTDC1 WILD-TYPE 99 70 69 118
'GTDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S16827.  Gene #1667: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GTDC1 MUTATED 1 1 4 0 3
GTDC1 WILD-TYPE 58 74 70 119 35

Figure S4263.  Get High-res Image Gene #1667: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GTDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S16828.  Gene #1667: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GTDC1 MUTATED 0 4 2 0 2
GTDC1 WILD-TYPE 51 72 59 71 93
'GTDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.015 (Fisher's exact test), Q value = 0.12

Table S16829.  Gene #1667: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GTDC1 MUTATED 0 3 1 2 0 0 0 2 0
GTDC1 WILD-TYPE 69 45 38 14 53 20 21 36 50

Figure S4264.  Get High-res Image Gene #1667: 'GTDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SERPINB10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S16830.  Gene #1668: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SERPINB10 MUTATED 1 0 0 2 0
SERPINB10 WILD-TYPE 31 18 46 25 23
'SERPINB10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S16831.  Gene #1668: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SERPINB10 MUTATED 2 1 0
SERPINB10 WILD-TYPE 41 66 36
'SERPINB10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S16832.  Gene #1668: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SERPINB10 MUTATED 1 2 7
SERPINB10 WILD-TYPE 41 171 140
'SERPINB10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S16833.  Gene #1668: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SERPINB10 MUTATED 4 2 1
SERPINB10 WILD-TYPE 58 71 74
'SERPINB10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S16834.  Gene #1668: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SERPINB10 MUTATED 1 2 4
SERPINB10 WILD-TYPE 69 118 96
'SERPINB10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S16835.  Gene #1668: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SERPINB10 MUTATED 2 0 1 1 0 3 0 0 0
SERPINB10 WILD-TYPE 39 26 29 28 39 66 20 14 22
'SERPINB10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.91

Table S16836.  Gene #1668: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SERPINB10 MUTATED 1 2 3 4
SERPINB10 WILD-TYPE 99 70 69 117
'SERPINB10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S16837.  Gene #1668: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SERPINB10 MUTATED 1 1 4 2 2
SERPINB10 WILD-TYPE 58 74 70 117 36
'SERPINB10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S16838.  Gene #1668: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SERPINB10 MUTATED 1 2 3 0 3
SERPINB10 WILD-TYPE 50 74 58 71 92
'SERPINB10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S16839.  Gene #1668: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SERPINB10 MUTATED 1 2 0 1 1 2 0 1 1
SERPINB10 WILD-TYPE 68 46 39 15 52 18 21 37 49
'SERPINB10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.72

Table S16840.  Gene #1668: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SERPINB10 MUTATED 0 0 2 1 1 0
SERPINB10 WILD-TYPE 13 16 12 10 10 9
'SERPINB10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.92

Table S16841.  Gene #1668: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SERPINB10 MUTATED 0 0 0 1 1 0 2 0 0
SERPINB10 WILD-TYPE 11 7 7 8 7 7 9 9 5
'PCDHGA8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S16842.  Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PCDHGA8 MUTATED 2 0 0 1 0
PCDHGA8 WILD-TYPE 30 18 46 26 23
'PCDHGA8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S16843.  Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PCDHGA8 MUTATED 2 1 0
PCDHGA8 WILD-TYPE 41 66 36
'PCDHGA8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0065

Table S16844.  Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PCDHGA8 MUTATED 2 0 12
PCDHGA8 WILD-TYPE 40 173 135

Figure S4265.  Get High-res Image Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PCDHGA8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.16

Table S16845.  Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PCDHGA8 MUTATED 5 0 6
PCDHGA8 WILD-TYPE 57 73 69

Figure S4266.  Get High-res Image Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PCDHGA8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S16846.  Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PCDHGA8 MUTATED 1 6 6
PCDHGA8 WILD-TYPE 69 114 94
'PCDHGA8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.93

Table S16847.  Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PCDHGA8 MUTATED 1 1 1 1 2 3 2 2 0
PCDHGA8 WILD-TYPE 40 25 29 28 37 66 18 12 22
'PCDHGA8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 0.2

Table S16848.  Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PCDHGA8 MUTATED 1 7 2 4
PCDHGA8 WILD-TYPE 99 65 70 117

Figure S4267.  Get High-res Image Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PCDHGA8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S16849.  Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PCDHGA8 MUTATED 1 2 7 3 1
PCDHGA8 WILD-TYPE 58 73 67 116 37
'PCDHGA8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.18

Table S16850.  Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PCDHGA8 MUTATED 0 6 2 0 6
PCDHGA8 WILD-TYPE 51 70 59 71 89

Figure S4268.  Get High-res Image Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PCDHGA8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00164 (Fisher's exact test), Q value = 0.034

Table S16851.  Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PCDHGA8 MUTATED 0 2 1 4 0 2 1 2 2
PCDHGA8 WILD-TYPE 69 46 38 12 53 18 20 36 48

Figure S4269.  Get High-res Image Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PCDHGA8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00635 (Fisher's exact test), Q value = 0.075

Table S16852.  Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PCDHGA8 MUTATED 0 0 0 0 3 0
PCDHGA8 WILD-TYPE 13 16 14 11 8 9

Figure S4270.  Get High-res Image Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PCDHGA8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S16853.  Gene #1669: 'PCDHGA8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PCDHGA8 MUTATED 0 0 0 2 0 0 1 0 0
PCDHGA8 WILD-TYPE 11 7 7 7 8 7 10 9 5
'F2R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0779 (Fisher's exact test), Q value = 0.3

Table S16854.  Gene #1670: 'F2R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
F2R MUTATED 1 2 8
F2R WILD-TYPE 41 171 139
'F2R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S16855.  Gene #1670: 'F2R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
F2R MUTATED 2 2 6
F2R WILD-TYPE 60 71 69
'F2R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S16856.  Gene #1670: 'F2R MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
F2R MUTATED 0 4 5
F2R WILD-TYPE 70 116 95
'F2R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S16857.  Gene #1670: 'F2R MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
F2R MUTATED 1 0 0 1 0 4 2 1 0
F2R WILD-TYPE 40 26 30 28 39 65 18 13 22
'F2R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.2

Table S16858.  Gene #1670: 'F2R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
F2R MUTATED 2 6 2 1
F2R WILD-TYPE 98 66 70 120

Figure S4271.  Get High-res Image Gene #1670: 'F2R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'F2R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0272 (Fisher's exact test), Q value = 0.17

Table S16859.  Gene #1670: 'F2R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
F2R MUTATED 3 2 5 0 1
F2R WILD-TYPE 56 73 69 119 37

Figure S4272.  Get High-res Image Gene #1670: 'F2R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'F2R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S16860.  Gene #1670: 'F2R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
F2R MUTATED 2 6 1 1 1
F2R WILD-TYPE 49 70 60 70 94
'F2R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S16861.  Gene #1670: 'F2R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
F2R MUTATED 2 3 1 2 2 0 0 1 0
F2R WILD-TYPE 67 45 38 14 51 20 21 37 50
'C17ORF58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S16862.  Gene #1671: 'C17ORF58 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C17ORF58 MUTATED 0 0 3
C17ORF58 WILD-TYPE 42 173 144
'C17ORF58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S16863.  Gene #1671: 'C17ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C17ORF58 MUTATED 1 0 2
C17ORF58 WILD-TYPE 61 73 73
'C17ORF58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0801 (Fisher's exact test), Q value = 0.31

Table S16864.  Gene #1671: 'C17ORF58 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C17ORF58 MUTATED 0 2 1 0
C17ORF58 WILD-TYPE 100 70 71 121
'C17ORF58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0317 (Fisher's exact test), Q value = 0.19

Table S16865.  Gene #1671: 'C17ORF58 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C17ORF58 MUTATED 0 0 3 0 0
C17ORF58 WILD-TYPE 59 75 71 119 38

Figure S4273.  Get High-res Image Gene #1671: 'C17ORF58 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C17ORF58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S16866.  Gene #1671: 'C17ORF58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C17ORF58 MUTATED 0 2 1 0 0
C17ORF58 WILD-TYPE 51 74 60 71 95
'C17ORF58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00665 (Fisher's exact test), Q value = 0.076

Table S16867.  Gene #1671: 'C17ORF58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C17ORF58 MUTATED 0 0 0 2 1 0 0 0 0
C17ORF58 WILD-TYPE 69 48 39 14 52 20 21 38 50

Figure S4274.  Get High-res Image Gene #1671: 'C17ORF58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TEX13A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S16868.  Gene #1672: 'TEX13A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TEX13A MUTATED 4 0 2 0 0
TEX13A WILD-TYPE 28 18 44 27 23
'TEX13A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.88

Table S16869.  Gene #1672: 'TEX13A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TEX13A MUTATED 3 2 1
TEX13A WILD-TYPE 40 65 35
'TEX13A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0855 (Fisher's exact test), Q value = 0.32

Table S16870.  Gene #1672: 'TEX13A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TEX13A MUTATED 0 2 7
TEX13A WILD-TYPE 42 171 140
'TEX13A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S16871.  Gene #1672: 'TEX13A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TEX13A MUTATED 2 0 2
TEX13A WILD-TYPE 60 73 73
'TEX13A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S16872.  Gene #1672: 'TEX13A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TEX13A MUTATED 2 1 5
TEX13A WILD-TYPE 68 119 95
'TEX13A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S16873.  Gene #1672: 'TEX13A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TEX13A MUTATED 1 0 1 0 0 4 1 1 0
TEX13A WILD-TYPE 40 26 29 29 39 65 19 13 22
'TEX13A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.37

Table S16874.  Gene #1672: 'TEX13A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TEX13A MUTATED 0 2 2 6
TEX13A WILD-TYPE 100 70 70 115
'TEX13A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S16875.  Gene #1672: 'TEX13A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TEX13A MUTATED 1 1 2 4 2
TEX13A WILD-TYPE 58 74 72 115 36
'TEX13A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S16876.  Gene #1672: 'TEX13A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TEX13A MUTATED 0 2 2 2 4
TEX13A WILD-TYPE 51 74 59 69 91
'TEX13A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S16877.  Gene #1672: 'TEX13A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TEX13A MUTATED 2 2 1 0 1 0 1 2 1
TEX13A WILD-TYPE 67 46 38 16 52 20 20 36 49
'LCT MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0072

Table S16878.  Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LCT MUTATED 8 0 0 2 0
LCT WILD-TYPE 24 18 46 25 23

Figure S4275.  Get High-res Image Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LCT MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00219 (Fisher's exact test), Q value = 0.04

Table S16879.  Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LCT MUTATED 8 1 1
LCT WILD-TYPE 35 66 35

Figure S4276.  Get High-res Image Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LCT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00562 (Fisher's exact test), Q value = 0.071

Table S16880.  Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LCT MUTATED 3 8 22
LCT WILD-TYPE 39 165 125

Figure S4277.  Get High-res Image Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LCT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S16881.  Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LCT MUTATED 9 6 6
LCT WILD-TYPE 53 67 69
'LCT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0081

Table S16882.  Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LCT MUTATED 3 4 19
LCT WILD-TYPE 67 116 81

Figure S4278.  Get High-res Image Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LCT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0547 (Fisher's exact test), Q value = 0.25

Table S16883.  Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LCT MUTATED 5 0 2 0 2 13 1 1 2
LCT WILD-TYPE 36 26 28 29 37 56 19 13 20
'LCT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S16884.  Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LCT MUTATED 8 6 8 11
LCT WILD-TYPE 92 66 64 110
'LCT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S16885.  Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LCT MUTATED 6 7 8 4 8
LCT WILD-TYPE 53 68 66 115 30

Figure S4279.  Get High-res Image Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LCT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.54

Table S16886.  Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LCT MUTATED 3 9 6 2 10
LCT WILD-TYPE 48 67 55 69 85
'LCT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.12

Table S16887.  Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LCT MUTATED 4 7 1 2 4 3 0 8 1
LCT WILD-TYPE 65 41 38 14 49 17 21 30 49

Figure S4280.  Get High-res Image Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LCT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.27

Table S16888.  Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LCT MUTATED 0 0 1 1 3 2
LCT WILD-TYPE 13 16 13 10 8 7
'LCT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S16889.  Gene #1673: 'LCT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LCT MUTATED 2 0 1 0 0 2 2 0 0
LCT WILD-TYPE 9 7 6 9 8 5 9 9 5
'IDI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 0.33

Table S16890.  Gene #1674: 'IDI1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IDI1 MUTATED 1 0 3
IDI1 WILD-TYPE 41 173 144
'IDI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S16891.  Gene #1674: 'IDI1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IDI1 MUTATED 1 0 2
IDI1 WILD-TYPE 61 73 73
'IDI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S16892.  Gene #1674: 'IDI1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IDI1 MUTATED 1 1 1
IDI1 WILD-TYPE 69 119 99
'IDI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S16893.  Gene #1674: 'IDI1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IDI1 MUTATED 0 0 0 1 0 0 2 0 0
IDI1 WILD-TYPE 41 26 30 28 39 69 18 14 22

Figure S4281.  Get High-res Image Gene #1674: 'IDI1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'IDI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S16894.  Gene #1674: 'IDI1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IDI1 MUTATED 0 2 1 1
IDI1 WILD-TYPE 100 70 71 120
'IDI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.47

Table S16895.  Gene #1674: 'IDI1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IDI1 MUTATED 0 0 3 1 0
IDI1 WILD-TYPE 59 75 71 118 38
'IDI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0936 (Fisher's exact test), Q value = 0.33

Table S16896.  Gene #1674: 'IDI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IDI1 MUTATED 0 3 0 1 0
IDI1 WILD-TYPE 51 73 61 70 95
'IDI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00452 (Fisher's exact test), Q value = 0.062

Table S16897.  Gene #1674: 'IDI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IDI1 MUTATED 0 0 0 2 1 1 0 0 0
IDI1 WILD-TYPE 69 48 39 14 52 19 21 38 50

Figure S4282.  Get High-res Image Gene #1674: 'IDI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C6ORF15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.1

Table S16898.  Gene #1675: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C6ORF15 MUTATED 0 0 6
C6ORF15 WILD-TYPE 42 173 141

Figure S4283.  Get High-res Image Gene #1675: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C6ORF15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S16899.  Gene #1675: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C6ORF15 MUTATED 2 0 2
C6ORF15 WILD-TYPE 60 73 73
'C6ORF15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S16900.  Gene #1675: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C6ORF15 MUTATED 0 1 4
C6ORF15 WILD-TYPE 70 119 96
'C6ORF15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S16901.  Gene #1675: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C6ORF15 MUTATED 0 0 0 1 0 4 0 0 0
C6ORF15 WILD-TYPE 41 26 30 28 39 65 20 14 22
'C6ORF15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S16902.  Gene #1675: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C6ORF15 MUTATED 0 3 1 2
C6ORF15 WILD-TYPE 100 69 71 119
'C6ORF15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0331 (Fisher's exact test), Q value = 0.19

Table S16903.  Gene #1675: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C6ORF15 MUTATED 0 1 3 0 2
C6ORF15 WILD-TYPE 59 74 71 119 36

Figure S4284.  Get High-res Image Gene #1675: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C6ORF15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.75

Table S16904.  Gene #1675: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C6ORF15 MUTATED 0 3 1 0 2
C6ORF15 WILD-TYPE 51 73 60 71 93
'C6ORF15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0288 (Fisher's exact test), Q value = 0.18

Table S16905.  Gene #1675: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C6ORF15 MUTATED 0 2 0 1 0 0 2 0 1
C6ORF15 WILD-TYPE 69 46 39 15 53 20 19 38 49

Figure S4285.  Get High-res Image Gene #1675: 'C6ORF15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MYO3A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00588 (Fisher's exact test), Q value = 0.073

Table S16906.  Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MYO3A MUTATED 6 1 0 2 0
MYO3A WILD-TYPE 26 17 46 25 23

Figure S4286.  Get High-res Image Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MYO3A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00594 (Fisher's exact test), Q value = 0.073

Table S16907.  Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MYO3A MUTATED 7 2 0
MYO3A WILD-TYPE 36 65 36

Figure S4287.  Get High-res Image Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MYO3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00585 (Fisher's exact test), Q value = 0.072

Table S16908.  Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MYO3A MUTATED 5 9 23
MYO3A WILD-TYPE 37 164 124

Figure S4288.  Get High-res Image Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MYO3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S16909.  Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MYO3A MUTATED 11 7 12
MYO3A WILD-TYPE 51 66 63
'MYO3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S16910.  Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MYO3A MUTATED 2 15 15
MYO3A WILD-TYPE 68 105 85

Figure S4289.  Get High-res Image Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MYO3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.45

Table S16911.  Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MYO3A MUTATED 2 5 2 1 6 13 1 1 1
MYO3A WILD-TYPE 39 21 28 28 33 56 19 13 21
'MYO3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.85

Table S16912.  Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MYO3A MUTATED 10 10 8 9
MYO3A WILD-TYPE 90 62 64 112
'MYO3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00312 (Fisher's exact test), Q value = 0.049

Table S16913.  Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MYO3A MUTATED 6 11 10 3 7
MYO3A WILD-TYPE 53 64 64 116 31

Figure S4290.  Get High-res Image Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYO3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S16914.  Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MYO3A MUTATED 5 14 5 4 7
MYO3A WILD-TYPE 46 62 56 67 88
'MYO3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.55

Table S16915.  Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MYO3A MUTATED 8 6 3 5 4 2 1 4 2
MYO3A WILD-TYPE 61 42 36 11 49 18 20 34 48
'MYO3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.11

Table S16916.  Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MYO3A MUTATED 1 0 1 0 4 0
MYO3A WILD-TYPE 12 16 13 11 7 9

Figure S4291.  Get High-res Image Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MYO3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S16917.  Gene #1676: 'MYO3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MYO3A MUTATED 0 0 0 1 1 1 2 0 1
MYO3A WILD-TYPE 11 7 7 8 7 6 9 9 4
'C5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S16918.  Gene #1677: 'C5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C5 MUTATED 2 0 2 2 1
C5 WILD-TYPE 30 18 44 25 22
'C5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S16919.  Gene #1677: 'C5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C5 MUTATED 3 3 1
C5 WILD-TYPE 40 64 35
'C5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S16920.  Gene #1677: 'C5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C5 MUTATED 2 4 10
C5 WILD-TYPE 40 169 137
'C5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S16921.  Gene #1677: 'C5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C5 MUTATED 6 0 3
C5 WILD-TYPE 56 73 72

Figure S4292.  Get High-res Image Gene #1677: 'C5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.91

Table S16922.  Gene #1677: 'C5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C5 MUTATED 3 5 7
C5 WILD-TYPE 67 115 93
'C5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S16923.  Gene #1677: 'C5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C5 MUTATED 1 0 1 2 2 6 2 0 1
C5 WILD-TYPE 40 26 29 27 37 63 18 14 21
'C5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S16924.  Gene #1677: 'C5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C5 MUTATED 3 2 6 6
C5 WILD-TYPE 97 70 66 115
'C5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.86

Table S16925.  Gene #1677: 'C5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C5 MUTATED 3 2 5 4 3
C5 WILD-TYPE 56 73 69 115 35
'C5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S16926.  Gene #1677: 'C5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C5 MUTATED 1 5 1 2 7
C5 WILD-TYPE 50 71 60 69 88
'C5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S16927.  Gene #1677: 'C5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C5 MUTATED 1 5 1 1 2 1 1 1 3
C5 WILD-TYPE 68 43 38 15 51 19 20 37 47
'C5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S16928.  Gene #1677: 'C5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C5 MUTATED 1 2 3 0 0 0
C5 WILD-TYPE 12 14 11 11 11 9
'C5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S16929.  Gene #1677: 'C5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C5 MUTATED 0 1 1 1 1 1 1 0 0
C5 WILD-TYPE 11 6 6 8 7 6 10 9 5
'MICAL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00068 (Fisher's exact test), Q value = 0.019

Table S16930.  Gene #1678: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MICAL1 MUTATED 0 0 9
MICAL1 WILD-TYPE 42 173 138

Figure S4293.  Get High-res Image Gene #1678: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MICAL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0825 (Fisher's exact test), Q value = 0.31

Table S16931.  Gene #1678: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MICAL1 MUTATED 4 0 3
MICAL1 WILD-TYPE 58 73 72
'MICAL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.62

Table S16932.  Gene #1678: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MICAL1 MUTATED 2 1 4
MICAL1 WILD-TYPE 68 119 96
'MICAL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.74

Table S16933.  Gene #1678: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MICAL1 MUTATED 0 1 1 0 0 3 1 1 0
MICAL1 WILD-TYPE 41 25 29 29 39 66 19 13 22
'MICAL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0508 (Fisher's exact test), Q value = 0.24

Table S16934.  Gene #1678: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MICAL1 MUTATED 0 4 3 2
MICAL1 WILD-TYPE 100 68 69 119
'MICAL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S16935.  Gene #1678: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MICAL1 MUTATED 0 0 7 0 2
MICAL1 WILD-TYPE 59 75 67 119 36

Figure S4294.  Get High-res Image Gene #1678: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MICAL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.21

Table S16936.  Gene #1678: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MICAL1 MUTATED 0 6 1 1 1
MICAL1 WILD-TYPE 51 70 60 70 94

Figure S4295.  Get High-res Image Gene #1678: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MICAL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00475 (Fisher's exact test), Q value = 0.064

Table S16937.  Gene #1678: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MICAL1 MUTATED 1 3 0 3 0 0 0 2 0
MICAL1 WILD-TYPE 68 45 39 13 53 20 21 36 50

Figure S4296.  Get High-res Image Gene #1678: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MICAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S16938.  Gene #1678: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MICAL1 MUTATED 0 0 1 0 2 0
MICAL1 WILD-TYPE 13 16 13 11 9 9
'MICAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S16939.  Gene #1678: 'MICAL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MICAL1 MUTATED 0 0 0 2 1 0 0 0 0
MICAL1 WILD-TYPE 11 7 7 7 7 7 11 9 5
'PTPN13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S16940.  Gene #1679: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PTPN13 MUTATED 1 0 2 2 0
PTPN13 WILD-TYPE 31 18 44 25 23
'PTPN13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S16941.  Gene #1679: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PTPN13 MUTATED 2 2 1
PTPN13 WILD-TYPE 41 65 35
'PTPN13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00118 (Fisher's exact test), Q value = 0.028

Table S16942.  Gene #1679: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTPN13 MUTATED 0 5 17
PTPN13 WILD-TYPE 42 168 130

Figure S4297.  Get High-res Image Gene #1679: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPN13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.17

Table S16943.  Gene #1679: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTPN13 MUTATED 6 1 9
PTPN13 WILD-TYPE 56 72 66

Figure S4298.  Get High-res Image Gene #1679: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PTPN13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S16944.  Gene #1679: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTPN13 MUTATED 5 5 9
PTPN13 WILD-TYPE 65 115 91
'PTPN13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S16945.  Gene #1679: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTPN13 MUTATED 1 2 1 1 5 5 3 1 0
PTPN13 WILD-TYPE 40 24 29 28 34 64 17 13 22
'PTPN13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0668 (Fisher's exact test), Q value = 0.28

Table S16946.  Gene #1679: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTPN13 MUTATED 4 9 5 4
PTPN13 WILD-TYPE 96 63 67 117
'PTPN13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0266 (Fisher's exact test), Q value = 0.17

Table S16947.  Gene #1679: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTPN13 MUTATED 2 3 11 4 2
PTPN13 WILD-TYPE 57 72 63 115 36

Figure S4299.  Get High-res Image Gene #1679: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPN13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S16948.  Gene #1679: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTPN13 MUTATED 1 9 2 3 6
PTPN13 WILD-TYPE 50 67 59 68 89
'PTPN13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.54

Table S16949.  Gene #1679: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTPN13 MUTATED 2 4 1 3 2 3 1 2 3
PTPN13 WILD-TYPE 67 44 38 13 51 17 20 36 47
'TMPRSS15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.13

Table S16950.  Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TMPRSS15 MUTATED 4 0 0 3 0
TMPRSS15 WILD-TYPE 28 18 46 24 23

Figure S4300.  Get High-res Image Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TMPRSS15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0345 (Fisher's exact test), Q value = 0.2

Table S16951.  Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TMPRSS15 MUTATED 5 2 0
TMPRSS15 WILD-TYPE 38 65 36

Figure S4301.  Get High-res Image Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TMPRSS15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S16952.  Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMPRSS15 MUTATED 3 7 12
TMPRSS15 WILD-TYPE 39 166 135
'TMPRSS15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S16953.  Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TMPRSS15 MUTATED 5 5 5
TMPRSS15 WILD-TYPE 57 68 70
'TMPRSS15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.26

Table S16954.  Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TMPRSS15 MUTATED 2 13 4
TMPRSS15 WILD-TYPE 68 107 96
'TMPRSS15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S16955.  Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TMPRSS15 MUTATED 3 1 1 3 2 3 2 3 1
TMPRSS15 WILD-TYPE 38 25 29 26 37 66 18 11 21
'TMPRSS15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S16956.  Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMPRSS15 MUTATED 5 6 3 7
TMPRSS15 WILD-TYPE 95 66 69 114
'TMPRSS15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S16957.  Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMPRSS15 MUTATED 3 5 5 3 5
TMPRSS15 WILD-TYPE 56 70 69 116 33
'TMPRSS15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.18

Table S16958.  Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMPRSS15 MUTATED 6 6 0 2 8
TMPRSS15 WILD-TYPE 45 70 61 69 87

Figure S4302.  Get High-res Image Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TMPRSS15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.089 (Fisher's exact test), Q value = 0.32

Table S16959.  Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMPRSS15 MUTATED 2 3 1 2 5 3 0 5 1
TMPRSS15 WILD-TYPE 67 45 38 14 48 17 21 33 49
'TMPRSS15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0448 (Fisher's exact test), Q value = 0.23

Table S16960.  Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TMPRSS15 MUTATED 2 0 0 2 3 0
TMPRSS15 WILD-TYPE 11 16 14 9 8 9

Figure S4303.  Get High-res Image Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TMPRSS15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.02 (Fisher's exact test), Q value = 0.14

Table S16961.  Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TMPRSS15 MUTATED 0 0 1 4 0 0 2 0 0
TMPRSS15 WILD-TYPE 11 7 6 5 8 7 9 9 5

Figure S4304.  Get High-res Image Gene #1680: 'TMPRSS15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C17ORF71 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S16962.  Gene #1681: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C17ORF71 MUTATED 2 0 0 2 0
C17ORF71 WILD-TYPE 30 18 46 25 23
'C17ORF71 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S16963.  Gene #1681: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C17ORF71 MUTATED 3 1 0
C17ORF71 WILD-TYPE 40 66 36
'C17ORF71 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S16964.  Gene #1681: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C17ORF71 MUTATED 0 4 4
C17ORF71 WILD-TYPE 42 169 143
'C17ORF71 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S16965.  Gene #1681: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C17ORF71 MUTATED 2 1 2
C17ORF71 WILD-TYPE 60 72 73
'C17ORF71 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S16966.  Gene #1681: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C17ORF71 MUTATED 2 3 4
C17ORF71 WILD-TYPE 68 117 96
'C17ORF71 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.76

Table S16967.  Gene #1681: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C17ORF71 MUTATED 1 1 2 0 2 1 2 0 0
C17ORF71 WILD-TYPE 40 25 28 29 37 68 18 14 22
'C17ORF71 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.086 (Fisher's exact test), Q value = 0.32

Table S16968.  Gene #1681: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C17ORF71 MUTATED 0 1 4 4
C17ORF71 WILD-TYPE 100 71 68 117
'C17ORF71 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0081 (Fisher's exact test), Q value = 0.084

Table S16969.  Gene #1681: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C17ORF71 MUTATED 4 0 1 1 3
C17ORF71 WILD-TYPE 55 75 73 118 35

Figure S4305.  Get High-res Image Gene #1681: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C17ORF71 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.95

Table S16970.  Gene #1681: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C17ORF71 MUTATED 1 2 2 0 3
C17ORF71 WILD-TYPE 50 74 59 71 92
'C17ORF71 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.66

Table S16971.  Gene #1681: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C17ORF71 MUTATED 3 2 0 0 0 1 0 2 0
C17ORF71 WILD-TYPE 66 46 39 16 53 19 21 36 50
'C17ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.3

Table S16972.  Gene #1681: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C17ORF71 MUTATED 0 1 0 0 0 2
C17ORF71 WILD-TYPE 13 15 14 11 11 7
'C17ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S16973.  Gene #1681: 'C17ORF71 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C17ORF71 MUTATED 2 1 0 0 0 0 0 0 0
C17ORF71 WILD-TYPE 9 6 7 9 8 7 11 9 5
'WDR17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S16974.  Gene #1682: 'WDR17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
WDR17 MUTATED 5 0 0 2 1
WDR17 WILD-TYPE 27 18 46 25 22

Figure S4306.  Get High-res Image Gene #1682: 'WDR17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'WDR17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.44

Table S16975.  Gene #1682: 'WDR17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
WDR17 MUTATED 5 2 1
WDR17 WILD-TYPE 38 65 35
'WDR17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00073 (Fisher's exact test), Q value = 0.02

Table S16976.  Gene #1682: 'WDR17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WDR17 MUTATED 0 5 18
WDR17 WILD-TYPE 42 168 129

Figure S4307.  Get High-res Image Gene #1682: 'WDR17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'WDR17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S16977.  Gene #1682: 'WDR17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WDR17 MUTATED 7 3 4
WDR17 WILD-TYPE 55 70 71
'WDR17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.18

Table S16978.  Gene #1682: 'WDR17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WDR17 MUTATED 0 9 8
WDR17 WILD-TYPE 70 111 92

Figure S4308.  Get High-res Image Gene #1682: 'WDR17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'WDR17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S16979.  Gene #1682: 'WDR17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WDR17 MUTATED 3 2 2 2 0 6 1 0 1
WDR17 WILD-TYPE 38 24 28 27 39 63 19 14 21
'WDR17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 0.16

Table S16980.  Gene #1682: 'WDR17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WDR17 MUTATED 1 8 5 9
WDR17 WILD-TYPE 99 64 67 112

Figure S4309.  Get High-res Image Gene #1682: 'WDR17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'WDR17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S16981.  Gene #1682: 'WDR17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WDR17 MUTATED 3 4 6 4 6
WDR17 WILD-TYPE 56 71 68 115 32
'WDR17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.98

Table S16982.  Gene #1682: 'WDR17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WDR17 MUTATED 3 3 5 3 8
WDR17 WILD-TYPE 48 73 56 68 87
'WDR17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S16983.  Gene #1682: 'WDR17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WDR17 MUTATED 5 4 0 0 2 3 0 5 3
WDR17 WILD-TYPE 64 44 39 16 51 17 21 33 47
'FBXO40 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0988 (Fisher's exact test), Q value = 0.34

Table S16984.  Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FBXO40 MUTATED 3 0 0 1 0
FBXO40 WILD-TYPE 29 18 46 26 23
'FBXO40 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S16985.  Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FBXO40 MUTATED 3 1 0
FBXO40 WILD-TYPE 40 66 36
'FBXO40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0671 (Fisher's exact test), Q value = 0.28

Table S16986.  Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FBXO40 MUTATED 1 4 11
FBXO40 WILD-TYPE 41 169 136
'FBXO40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.73

Table S16987.  Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FBXO40 MUTATED 5 2 5
FBXO40 WILD-TYPE 57 71 70
'FBXO40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00685 (Fisher's exact test), Q value = 0.077

Table S16988.  Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FBXO40 MUTATED 0 4 10
FBXO40 WILD-TYPE 70 116 90

Figure S4310.  Get High-res Image Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FBXO40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 0.95

Table S16989.  Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FBXO40 MUTATED 1 0 1 2 1 6 2 0 1
FBXO40 WILD-TYPE 40 26 29 27 38 63 18 14 21
'FBXO40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.85

Table S16990.  Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FBXO40 MUTATED 3 4 5 4
FBXO40 WILD-TYPE 97 68 67 117
'FBXO40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0043 (Fisher's exact test), Q value = 0.06

Table S16991.  Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FBXO40 MUTATED 3 1 8 1 3
FBXO40 WILD-TYPE 56 74 66 118 35

Figure S4311.  Get High-res Image Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBXO40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 0.12

Table S16992.  Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FBXO40 MUTATED 3 8 1 0 3
FBXO40 WILD-TYPE 48 68 60 71 92

Figure S4312.  Get High-res Image Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FBXO40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S16993.  Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FBXO40 MUTATED 1 5 0 3 3 1 0 2 0
FBXO40 WILD-TYPE 68 43 39 13 50 19 21 36 50

Figure S4313.  Get High-res Image Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FBXO40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00642 (Fisher's exact test), Q value = 0.075

Table S16994.  Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FBXO40 MUTATED 0 0 0 0 3 0
FBXO40 WILD-TYPE 13 16 14 11 8 9

Figure S4314.  Get High-res Image Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FBXO40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S16995.  Gene #1683: 'FBXO40 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FBXO40 MUTATED 0 0 0 1 0 0 2 0 0
FBXO40 WILD-TYPE 11 7 7 8 8 7 9 9 5
'PDK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S16996.  Gene #1684: 'PDK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PDK1 MUTATED 0 1 4
PDK1 WILD-TYPE 42 172 143
'PDK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.93

Table S16997.  Gene #1684: 'PDK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PDK1 MUTATED 1 1 3
PDK1 WILD-TYPE 61 72 72
'PDK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S16998.  Gene #1684: 'PDK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PDK1 MUTATED 1 3 1
PDK1 WILD-TYPE 69 117 99
'PDK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S16999.  Gene #1684: 'PDK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PDK1 MUTATED 1 0 0 1 1 1 1 0 0
PDK1 WILD-TYPE 40 26 30 28 38 68 19 14 22
'PDK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00873 (Fisher's exact test), Q value = 0.088

Table S17000.  Gene #1684: 'PDK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PDK1 MUTATED 1 4 0 0
PDK1 WILD-TYPE 99 68 72 121

Figure S4315.  Get High-res Image Gene #1684: 'PDK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PDK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0804 (Fisher's exact test), Q value = 0.31

Table S17001.  Gene #1684: 'PDK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PDK1 MUTATED 0 3 2 0 0
PDK1 WILD-TYPE 59 72 72 119 38
'PDK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S17002.  Gene #1684: 'PDK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PDK1 MUTATED 2 2 0 0 1
PDK1 WILD-TYPE 49 74 61 71 94
'PDK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.62

Table S17003.  Gene #1684: 'PDK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PDK1 MUTATED 1 0 1 1 0 1 0 0 1
PDK1 WILD-TYPE 68 48 38 15 53 19 21 38 49
'FAM81B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S17004.  Gene #1685: 'FAM81B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM81B MUTATED 1 2 5
FAM81B WILD-TYPE 41 171 142
'FAM81B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.73

Table S17005.  Gene #1685: 'FAM81B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM81B MUTATED 2 1 4
FAM81B WILD-TYPE 60 72 71
'FAM81B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S17006.  Gene #1685: 'FAM81B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM81B MUTATED 1 2 4
FAM81B WILD-TYPE 69 118 96
'FAM81B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S17007.  Gene #1685: 'FAM81B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM81B MUTATED 0 1 0 1 2 2 1 0 0
FAM81B WILD-TYPE 41 25 30 28 37 67 19 14 22
'FAM81B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.62

Table S17008.  Gene #1685: 'FAM81B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM81B MUTATED 2 3 3 1
FAM81B WILD-TYPE 98 69 69 120
'FAM81B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S17009.  Gene #1685: 'FAM81B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM81B MUTATED 1 3 3 2 0
FAM81B WILD-TYPE 58 72 71 117 38
'FAM81B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S17010.  Gene #1685: 'FAM81B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM81B MUTATED 0 3 2 2 2
FAM81B WILD-TYPE 51 73 59 69 93
'FAM81B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.65

Table S17011.  Gene #1685: 'FAM81B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM81B MUTATED 2 1 0 0 3 2 0 1 0
FAM81B WILD-TYPE 67 47 39 16 50 18 21 37 50
'HIP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.95

Table S17012.  Gene #1686: 'HIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HIP1 MUTATED 1 0 1 2 0
HIP1 WILD-TYPE 31 18 45 25 23
'HIP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S17013.  Gene #1686: 'HIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HIP1 MUTATED 2 2 0
HIP1 WILD-TYPE 41 65 36
'HIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S17014.  Gene #1686: 'HIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HIP1 MUTATED 1 4 7
HIP1 WILD-TYPE 41 169 140
'HIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S17015.  Gene #1686: 'HIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HIP1 MUTATED 1 4 3
HIP1 WILD-TYPE 61 69 72
'HIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.83

Table S17016.  Gene #1686: 'HIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HIP1 MUTATED 1 6 4
HIP1 WILD-TYPE 69 114 96
'HIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S17017.  Gene #1686: 'HIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HIP1 MUTATED 0 0 2 2 2 3 1 1 0
HIP1 WILD-TYPE 41 26 28 27 37 66 19 13 22
'HIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S17018.  Gene #1686: 'HIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HIP1 MUTATED 4 4 1 3
HIP1 WILD-TYPE 96 68 71 118
'HIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 0.98

Table S17019.  Gene #1686: 'HIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HIP1 MUTATED 2 3 3 2 2
HIP1 WILD-TYPE 57 72 71 117 36
'HIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.98

Table S17020.  Gene #1686: 'HIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HIP1 MUTATED 2 4 2 1 2
HIP1 WILD-TYPE 49 72 59 70 93
'HIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0958 (Fisher's exact test), Q value = 0.34

Table S17021.  Gene #1686: 'HIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HIP1 MUTATED 3 2 0 1 1 3 0 1 0
HIP1 WILD-TYPE 66 46 39 15 52 17 21 37 50
'HIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S17022.  Gene #1686: 'HIP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HIP1 MUTATED 1 1 0 0 1 0
HIP1 WILD-TYPE 12 15 14 11 10 9
'HIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S17023.  Gene #1686: 'HIP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HIP1 MUTATED 1 0 1 1 0 0 0 0 0
HIP1 WILD-TYPE 10 7 6 8 8 7 11 9 5
'PHLDB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S17024.  Gene #1687: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PHLDB2 MUTATED 2 1 0 2 1
PHLDB2 WILD-TYPE 30 17 46 25 22
'PHLDB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S17025.  Gene #1687: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PHLDB2 MUTATED 3 1 2
PHLDB2 WILD-TYPE 40 66 34
'PHLDB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.15

Table S17026.  Gene #1687: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PHLDB2 MUTATED 0 5 13
PHLDB2 WILD-TYPE 42 168 134

Figure S4316.  Get High-res Image Gene #1687: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PHLDB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0457 (Fisher's exact test), Q value = 0.23

Table S17027.  Gene #1687: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PHLDB2 MUTATED 7 1 4
PHLDB2 WILD-TYPE 55 72 71

Figure S4317.  Get High-res Image Gene #1687: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PHLDB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.57

Table S17028.  Gene #1687: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PHLDB2 MUTATED 1 8 6
PHLDB2 WILD-TYPE 69 112 94
'PHLDB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S17029.  Gene #1687: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PHLDB2 MUTATED 1 1 3 1 1 4 2 2 0
PHLDB2 WILD-TYPE 40 25 27 28 38 65 18 12 22
'PHLDB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S17030.  Gene #1687: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PHLDB2 MUTATED 2 7 2 7
PHLDB2 WILD-TYPE 98 65 70 114
'PHLDB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.88

Table S17031.  Gene #1687: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PHLDB2 MUTATED 1 4 5 5 3
PHLDB2 WILD-TYPE 58 71 69 114 35
'PHLDB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S17032.  Gene #1687: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PHLDB2 MUTATED 1 8 1 2 5
PHLDB2 WILD-TYPE 50 68 60 69 90
'PHLDB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S17033.  Gene #1687: 'PHLDB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PHLDB2 MUTATED 3 2 1 2 2 2 1 2 2
PHLDB2 WILD-TYPE 66 46 38 14 51 18 20 36 48
'TATDN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0753 (Fisher's exact test), Q value = 0.3

Table S17034.  Gene #1688: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TATDN2 MUTATED 3 0 0 2 0
TATDN2 WILD-TYPE 29 18 46 25 23
'TATDN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.28

Table S17035.  Gene #1688: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TATDN2 MUTATED 4 1 0
TATDN2 WILD-TYPE 39 66 36
'TATDN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.14

Table S17036.  Gene #1688: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TATDN2 MUTATED 0 1 8
TATDN2 WILD-TYPE 42 172 139

Figure S4318.  Get High-res Image Gene #1688: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TATDN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17037.  Gene #1688: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TATDN2 MUTATED 1 1 2
TATDN2 WILD-TYPE 61 72 73
'TATDN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S17038.  Gene #1688: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TATDN2 MUTATED 1 3 4
TATDN2 WILD-TYPE 69 117 96
'TATDN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S17039.  Gene #1688: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TATDN2 MUTATED 1 0 1 1 0 4 0 1 0
TATDN2 WILD-TYPE 40 26 29 28 39 65 20 13 22
'TATDN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S17040.  Gene #1688: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TATDN2 MUTATED 1 2 1 5
TATDN2 WILD-TYPE 99 70 71 116
'TATDN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00819 (Fisher's exact test), Q value = 0.085

Table S17041.  Gene #1688: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TATDN2 MUTATED 1 0 3 1 4
TATDN2 WILD-TYPE 58 75 71 118 34

Figure S4319.  Get High-res Image Gene #1688: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TATDN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.63

Table S17042.  Gene #1688: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TATDN2 MUTATED 0 3 0 1 4
TATDN2 WILD-TYPE 51 73 61 70 91
'TATDN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S17043.  Gene #1688: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TATDN2 MUTATED 2 1 0 1 0 1 0 3 0
TATDN2 WILD-TYPE 67 47 39 15 53 19 21 35 50
'TATDN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.96

Table S17044.  Gene #1688: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TATDN2 MUTATED 0 0 1 1 1 0
TATDN2 WILD-TYPE 13 16 13 10 10 9
'TATDN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 0.92

Table S17045.  Gene #1688: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TATDN2 MUTATED 0 0 0 1 0 1 0 1 0
TATDN2 WILD-TYPE 11 7 7 8 8 6 11 8 5
'SFRP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S17046.  Gene #1689: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SFRP2 MUTATED 0 4 4
SFRP2 WILD-TYPE 42 169 143
'SFRP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S17047.  Gene #1689: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SFRP2 MUTATED 4 3 1
SFRP2 WILD-TYPE 58 70 74
'SFRP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S17048.  Gene #1689: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SFRP2 MUTATED 1 1 4
SFRP2 WILD-TYPE 69 119 96
'SFRP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S17049.  Gene #1689: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SFRP2 MUTATED 1 0 0 0 2 3 0 0 0
SFRP2 WILD-TYPE 40 26 30 29 37 66 20 14 22
'SFRP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0963 (Fisher's exact test), Q value = 0.34

Table S17050.  Gene #1689: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SFRP2 MUTATED 3 2 3 0
SFRP2 WILD-TYPE 97 70 69 121
'SFRP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.73

Table S17051.  Gene #1689: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SFRP2 MUTATED 1 3 3 1 0
SFRP2 WILD-TYPE 58 72 71 118 38
'SFRP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.17

Table S17052.  Gene #1689: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SFRP2 MUTATED 0 5 2 1 0
SFRP2 WILD-TYPE 51 71 59 70 95

Figure S4320.  Get High-res Image Gene #1689: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SFRP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S17053.  Gene #1689: 'SFRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SFRP2 MUTATED 3 3 0 1 0 0 1 0 0
SFRP2 WILD-TYPE 66 45 39 15 53 20 20 38 50
'EPRS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00899 (Fisher's exact test), Q value = 0.089

Table S17054.  Gene #1690: 'EPRS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EPRS MUTATED 5 0 0 2 0
EPRS WILD-TYPE 27 18 46 25 23

Figure S4321.  Get High-res Image Gene #1690: 'EPRS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EPRS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.23

Table S17055.  Gene #1690: 'EPRS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EPRS MUTATED 5 1 1
EPRS WILD-TYPE 38 66 35

Figure S4322.  Get High-res Image Gene #1690: 'EPRS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EPRS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00907 (Fisher's exact test), Q value = 0.089

Table S17056.  Gene #1690: 'EPRS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EPRS MUTATED 3 3 13
EPRS WILD-TYPE 39 170 134

Figure S4323.  Get High-res Image Gene #1690: 'EPRS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EPRS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S17057.  Gene #1690: 'EPRS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EPRS MUTATED 4 3 5
EPRS WILD-TYPE 58 70 70
'EPRS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.98

Table S17058.  Gene #1690: 'EPRS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EPRS MUTATED 2 6 6
EPRS WILD-TYPE 68 114 94
'EPRS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S17059.  Gene #1690: 'EPRS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EPRS MUTATED 2 0 1 3 2 3 0 0 3
EPRS WILD-TYPE 39 26 29 26 37 66 20 14 19
'EPRS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S17060.  Gene #1690: 'EPRS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EPRS MUTATED 6 3 3 7
EPRS WILD-TYPE 94 69 69 114
'EPRS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.22

Table S17061.  Gene #1690: 'EPRS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EPRS MUTATED 2 6 4 2 5
EPRS WILD-TYPE 57 69 70 117 33

Figure S4324.  Get High-res Image Gene #1690: 'EPRS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EPRS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S17062.  Gene #1690: 'EPRS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EPRS MUTATED 3 4 4 3 4
EPRS WILD-TYPE 48 72 57 68 91
'EPRS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S17063.  Gene #1690: 'EPRS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EPRS MUTATED 3 3 2 1 4 1 0 3 1
EPRS WILD-TYPE 66 45 37 15 49 19 21 35 49
'CELSR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S17064.  Gene #1691: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CELSR1 MUTATED 3 0 1 0 1
CELSR1 WILD-TYPE 29 18 45 27 22
'CELSR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S17065.  Gene #1691: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CELSR1 MUTATED 3 1 1
CELSR1 WILD-TYPE 40 66 35
'CELSR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00732 (Fisher's exact test), Q value = 0.08

Table S17066.  Gene #1691: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CELSR1 MUTATED 3 4 15
CELSR1 WILD-TYPE 39 169 132

Figure S4325.  Get High-res Image Gene #1691: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CELSR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S17067.  Gene #1691: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CELSR1 MUTATED 5 2 9
CELSR1 WILD-TYPE 57 71 66
'CELSR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S17068.  Gene #1691: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CELSR1 MUTATED 4 5 9
CELSR1 WILD-TYPE 66 115 91
'CELSR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.88

Table S17069.  Gene #1691: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CELSR1 MUTATED 1 1 2 2 3 8 0 1 0
CELSR1 WILD-TYPE 40 25 28 27 36 61 20 13 22
'CELSR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0811 (Fisher's exact test), Q value = 0.31

Table S17070.  Gene #1691: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CELSR1 MUTATED 2 8 5 7
CELSR1 WILD-TYPE 98 64 67 114
'CELSR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00022 (Fisher's exact test), Q value = 0.0096

Table S17071.  Gene #1691: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CELSR1 MUTATED 0 2 13 4 3
CELSR1 WILD-TYPE 59 73 61 115 35

Figure S4326.  Get High-res Image Gene #1691: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00162 (Fisher's exact test), Q value = 0.033

Table S17072.  Gene #1691: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CELSR1 MUTATED 0 12 1 4 4
CELSR1 WILD-TYPE 51 64 60 67 91

Figure S4327.  Get High-res Image Gene #1691: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00561 (Fisher's exact test), Q value = 0.071

Table S17073.  Gene #1691: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CELSR1 MUTATED 5 5 2 5 0 0 1 1 2
CELSR1 WILD-TYPE 64 43 37 11 53 20 20 37 48

Figure S4328.  Get High-res Image Gene #1691: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.65

Table S17074.  Gene #1691: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CELSR1 MUTATED 2 1 2 0 3 0
CELSR1 WILD-TYPE 11 15 12 11 8 9
'CELSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0582 (Fisher's exact test), Q value = 0.26

Table S17075.  Gene #1691: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CELSR1 MUTATED 0 0 0 4 0 1 2 1 0
CELSR1 WILD-TYPE 11 7 7 5 8 6 9 8 5
'PIAS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S17076.  Gene #1692: 'PIAS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PIAS2 MUTATED 0 1 3
PIAS2 WILD-TYPE 42 172 144
'PIAS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.92

Table S17077.  Gene #1692: 'PIAS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PIAS2 MUTATED 0 1 2
PIAS2 WILD-TYPE 70 119 98
'PIAS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S17078.  Gene #1692: 'PIAS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PIAS2 MUTATED 1 0 0 0 0 1 0 0 1
PIAS2 WILD-TYPE 40 26 30 29 39 68 20 14 21
'PIAS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S17079.  Gene #1692: 'PIAS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PIAS2 MUTATED 0 0 2 2
PIAS2 WILD-TYPE 100 72 70 119
'PIAS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.91

Table S17080.  Gene #1692: 'PIAS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PIAS2 MUTATED 1 0 1 1 1
PIAS2 WILD-TYPE 58 75 73 118 37
'PIAS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S17081.  Gene #1692: 'PIAS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PIAS2 MUTATED 1 1 0 1 1
PIAS2 WILD-TYPE 50 75 61 70 94
'PIAS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S17082.  Gene #1692: 'PIAS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PIAS2 MUTATED 1 1 0 0 1 0 0 1 0
PIAS2 WILD-TYPE 68 47 39 16 52 20 21 37 50
'CNGA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S17083.  Gene #1693: 'CNGA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CNGA3 MUTATED 4 0 0 1 0
CNGA3 WILD-TYPE 28 18 46 26 23

Figure S4329.  Get High-res Image Gene #1693: 'CNGA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CNGA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0687 (Fisher's exact test), Q value = 0.28

Table S17084.  Gene #1693: 'CNGA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CNGA3 MUTATED 4 1 0
CNGA3 WILD-TYPE 39 66 36
'CNGA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00708 (Fisher's exact test), Q value = 0.079

Table S17085.  Gene #1693: 'CNGA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CNGA3 MUTATED 0 2 11
CNGA3 WILD-TYPE 42 171 136

Figure S4330.  Get High-res Image Gene #1693: 'CNGA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CNGA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.91

Table S17086.  Gene #1693: 'CNGA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CNGA3 MUTATED 1 3 4
CNGA3 WILD-TYPE 61 70 71
'CNGA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0928 (Fisher's exact test), Q value = 0.33

Table S17087.  Gene #1693: 'CNGA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CNGA3 MUTATED 0 7 3
CNGA3 WILD-TYPE 70 113 97
'CNGA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.75

Table S17088.  Gene #1693: 'CNGA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CNGA3 MUTATED 0 2 2 1 0 4 0 0 1
CNGA3 WILD-TYPE 41 24 28 28 39 65 20 14 21
'CNGA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S17089.  Gene #1693: 'CNGA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CNGA3 MUTATED 2 4 1 6
CNGA3 WILD-TYPE 98 68 71 115
'CNGA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.84

Table S17090.  Gene #1693: 'CNGA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CNGA3 MUTATED 1 3 3 3 3
CNGA3 WILD-TYPE 58 72 71 116 35
'CNGA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S17091.  Gene #1693: 'CNGA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CNGA3 MUTATED 1 6 0 1 4
CNGA3 WILD-TYPE 50 70 61 70 91
'CNGA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S17092.  Gene #1693: 'CNGA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CNGA3 MUTATED 3 1 0 1 1 2 1 2 1
CNGA3 WILD-TYPE 66 47 39 15 52 18 20 36 49
'OR51E2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.27

Table S17093.  Gene #1694: 'OR51E2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR51E2 MUTATED 1 0 4
OR51E2 WILD-TYPE 41 173 143
'OR51E2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.98

Table S17094.  Gene #1694: 'OR51E2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR51E2 MUTATED 2 1 1
OR51E2 WILD-TYPE 60 72 74
'OR51E2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.71

Table S17095.  Gene #1694: 'OR51E2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR51E2 MUTATED 0 2 3
OR51E2 WILD-TYPE 70 118 97
'OR51E2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S17096.  Gene #1694: 'OR51E2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR51E2 MUTATED 1 1 1 0 0 2 0 0 0
OR51E2 WILD-TYPE 40 25 29 29 39 67 20 14 22
'OR51E2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.92

Table S17097.  Gene #1694: 'OR51E2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR51E2 MUTATED 1 0 2 2
OR51E2 WILD-TYPE 99 72 70 119
'OR51E2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S17098.  Gene #1694: 'OR51E2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR51E2 MUTATED 1 1 1 1 1
OR51E2 WILD-TYPE 58 74 73 118 37
'OR51E2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.94

Table S17099.  Gene #1694: 'OR51E2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR51E2 MUTATED 0 0 1 2 2
OR51E2 WILD-TYPE 51 76 60 69 93
'OR51E2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S17100.  Gene #1694: 'OR51E2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR51E2 MUTATED 2 1 0 0 0 0 0 1 1
OR51E2 WILD-TYPE 67 47 39 16 53 20 21 37 49
'OR51E2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S17101.  Gene #1694: 'OR51E2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR51E2 MUTATED 0 1 1 1 0 0
OR51E2 WILD-TYPE 13 15 13 10 11 9
'OR51E2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.94

Table S17102.  Gene #1694: 'OR51E2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR51E2 MUTATED 2 0 0 0 0 0 1 0 0
OR51E2 WILD-TYPE 9 7 7 9 8 7 10 9 5
'OR6C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S17103.  Gene #1695: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR6C1 MUTATED 0 3 4
OR6C1 WILD-TYPE 42 170 143
'OR6C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.58

Table S17104.  Gene #1695: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR6C1 MUTATED 4 2 1
OR6C1 WILD-TYPE 58 71 74
'OR6C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S17105.  Gene #1695: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR6C1 MUTATED 1 1 4
OR6C1 WILD-TYPE 69 119 96
'OR6C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S17106.  Gene #1695: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR6C1 MUTATED 2 0 0 1 0 2 0 0 1
OR6C1 WILD-TYPE 39 26 30 28 39 67 20 14 21
'OR6C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.21

Table S17107.  Gene #1695: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR6C1 MUTATED 2 1 4 0
OR6C1 WILD-TYPE 98 71 68 121

Figure S4331.  Get High-res Image Gene #1695: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'OR6C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0523 (Fisher's exact test), Q value = 0.25

Table S17108.  Gene #1695: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR6C1 MUTATED 3 3 1 0 0
OR6C1 WILD-TYPE 56 72 73 119 38
'OR6C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S17109.  Gene #1695: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR6C1 MUTATED 0 1 4 1 1
OR6C1 WILD-TYPE 51 75 57 70 94
'OR6C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S17110.  Gene #1695: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR6C1 MUTATED 2 2 1 0 1 0 0 0 1
OR6C1 WILD-TYPE 67 46 38 16 52 20 21 38 49
'OR6C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.43

Table S17111.  Gene #1695: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR6C1 MUTATED 0 1 0 0 1 2
OR6C1 WILD-TYPE 13 15 14 11 10 7
'OR6C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S17112.  Gene #1695: 'OR6C1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR6C1 MUTATED 1 1 0 0 0 1 1 0 0
OR6C1 WILD-TYPE 10 6 7 9 8 6 10 9 5
'EVI2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S17113.  Gene #1696: 'EVI2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EVI2A MUTATED 0 3 4
EVI2A WILD-TYPE 42 170 143
'EVI2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S17114.  Gene #1696: 'EVI2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EVI2A MUTATED 1 2 3
EVI2A WILD-TYPE 61 71 72
'EVI2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S17115.  Gene #1696: 'EVI2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EVI2A MUTATED 1 3 3
EVI2A WILD-TYPE 69 117 97
'EVI2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.92

Table S17116.  Gene #1696: 'EVI2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EVI2A MUTATED 1 2 1 0 0 2 1 0 0
EVI2A WILD-TYPE 40 24 29 29 39 67 19 14 22
'EVI2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S17117.  Gene #1696: 'EVI2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EVI2A MUTATED 4 2 0 1
EVI2A WILD-TYPE 96 70 72 120
'EVI2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S17118.  Gene #1696: 'EVI2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EVI2A MUTATED 1 3 2 1 0
EVI2A WILD-TYPE 58 72 72 118 38
'EVI2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S17119.  Gene #1696: 'EVI2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EVI2A MUTATED 1 3 0 2 0
EVI2A WILD-TYPE 50 73 61 69 95
'EVI2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0776 (Fisher's exact test), Q value = 0.3

Table S17120.  Gene #1696: 'EVI2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EVI2A MUTATED 1 1 1 1 0 2 0 0 0
EVI2A WILD-TYPE 68 47 38 15 53 18 21 38 50
'EVI2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S17121.  Gene #1696: 'EVI2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EVI2A MUTATED 2 0 0 0 1 0
EVI2A WILD-TYPE 11 16 14 11 10 9
'EVI2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.52

Table S17122.  Gene #1696: 'EVI2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EVI2A MUTATED 0 0 0 1 0 0 0 2 0
EVI2A WILD-TYPE 11 7 7 8 8 7 11 7 5
'KIAA0415 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S17123.  Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA0415 MUTATED 1 0 11
KIAA0415 WILD-TYPE 41 173 136

Figure S4332.  Get High-res Image Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIAA0415 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.16

Table S17124.  Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA0415 MUTATED 5 0 6
KIAA0415 WILD-TYPE 57 73 69

Figure S4333.  Get High-res Image Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KIAA0415 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S17125.  Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA0415 MUTATED 0 4 6
KIAA0415 WILD-TYPE 70 116 94
'KIAA0415 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S17126.  Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA0415 MUTATED 1 1 0 0 1 4 2 1 0
KIAA0415 WILD-TYPE 40 25 30 29 38 65 18 13 22
'KIAA0415 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.02

Table S17127.  Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA0415 MUTATED 0 6 5 1
KIAA0415 WILD-TYPE 100 66 67 120

Figure S4334.  Get High-res Image Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIAA0415 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S17128.  Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA0415 MUTATED 1 0 10 0 1
KIAA0415 WILD-TYPE 58 75 64 119 37

Figure S4335.  Get High-res Image Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIAA0415 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.0087

Table S17129.  Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA0415 MUTATED 0 9 2 1 0
KIAA0415 WILD-TYPE 51 67 59 70 95

Figure S4336.  Get High-res Image Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIAA0415 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00081 (Fisher's exact test), Q value = 0.022

Table S17130.  Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA0415 MUTATED 1 4 0 4 2 1 0 0 0
KIAA0415 WILD-TYPE 68 44 39 12 51 19 21 38 50

Figure S4337.  Get High-res Image Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIAA0415 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00435 (Fisher's exact test), Q value = 0.06

Table S17131.  Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIAA0415 MUTATED 0 0 2 0 4 0
KIAA0415 WILD-TYPE 13 16 12 11 7 9

Figure S4338.  Get High-res Image Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KIAA0415 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0997 (Fisher's exact test), Q value = 0.34

Table S17132.  Gene #1697: 'KIAA0415 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIAA0415 MUTATED 0 0 0 3 0 1 2 0 0
KIAA0415 WILD-TYPE 11 7 7 6 8 6 9 9 5
'ELANE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 0.31

Table S17133.  Gene #1698: 'ELANE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ELANE MUTATED 0 1 6
ELANE WILD-TYPE 42 172 141
'ELANE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S17134.  Gene #1698: 'ELANE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ELANE MUTATED 3 0 3
ELANE WILD-TYPE 59 73 72
'ELANE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.78

Table S17135.  Gene #1698: 'ELANE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ELANE MUTATED 0 3 3
ELANE WILD-TYPE 70 117 97
'ELANE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S17136.  Gene #1698: 'ELANE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ELANE MUTATED 0 1 1 1 0 2 1 0 0
ELANE WILD-TYPE 41 25 29 28 39 67 19 14 22
'ELANE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 0.19

Table S17137.  Gene #1698: 'ELANE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ELANE MUTATED 0 4 2 1
ELANE WILD-TYPE 100 68 70 120

Figure S4339.  Get High-res Image Gene #1698: 'ELANE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ELANE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.54

Table S17138.  Gene #1698: 'ELANE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ELANE MUTATED 1 1 4 1 0
ELANE WILD-TYPE 58 74 70 118 38
'ELANE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S17139.  Gene #1698: 'ELANE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ELANE MUTATED 0 4 1 0 2
ELANE WILD-TYPE 51 72 60 71 93
'ELANE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 0.12

Table S17140.  Gene #1698: 'ELANE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ELANE MUTATED 0 3 0 1 0 2 0 0 1
ELANE WILD-TYPE 69 45 39 15 53 18 21 38 49

Figure S4340.  Get High-res Image Gene #1698: 'ELANE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'UGGT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.65

Table S17141.  Gene #1699: 'UGGT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
UGGT1 MUTATED 3 0 1 2 0
UGGT1 WILD-TYPE 29 18 45 25 23
'UGGT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S17142.  Gene #1699: 'UGGT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
UGGT1 MUTATED 4 1 1
UGGT1 WILD-TYPE 39 66 35
'UGGT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00452 (Fisher's exact test), Q value = 0.062

Table S17143.  Gene #1699: 'UGGT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UGGT1 MUTATED 1 3 14
UGGT1 WILD-TYPE 41 170 133

Figure S4341.  Get High-res Image Gene #1699: 'UGGT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UGGT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S17144.  Gene #1699: 'UGGT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UGGT1 MUTATED 4 2 6
UGGT1 WILD-TYPE 58 71 69
'UGGT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.099 (Fisher's exact test), Q value = 0.34

Table S17145.  Gene #1699: 'UGGT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UGGT1 MUTATED 6 3 8
UGGT1 WILD-TYPE 64 117 92
'UGGT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 0.91

Table S17146.  Gene #1699: 'UGGT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UGGT1 MUTATED 3 0 2 1 3 7 0 1 0
UGGT1 WILD-TYPE 38 26 28 28 36 62 20 13 22
'UGGT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S17147.  Gene #1699: 'UGGT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UGGT1 MUTATED 1 6 4 7
UGGT1 WILD-TYPE 99 66 68 114
'UGGT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00403 (Fisher's exact test), Q value = 0.057

Table S17148.  Gene #1699: 'UGGT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UGGT1 MUTATED 3 0 8 3 4
UGGT1 WILD-TYPE 56 75 66 116 34

Figure S4342.  Get High-res Image Gene #1699: 'UGGT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UGGT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S17149.  Gene #1699: 'UGGT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UGGT1 MUTATED 2 4 4 1 6
UGGT1 WILD-TYPE 49 72 57 70 89
'UGGT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.13

Table S17150.  Gene #1699: 'UGGT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UGGT1 MUTATED 2 5 0 2 0 2 1 4 1
UGGT1 WILD-TYPE 67 43 39 14 53 18 20 34 49

Figure S4343.  Get High-res Image Gene #1699: 'UGGT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'UGGT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.6

Table S17151.  Gene #1699: 'UGGT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
UGGT1 MUTATED 0 0 1 2 1 0
UGGT1 WILD-TYPE 13 16 13 9 10 9
'UGGT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S17152.  Gene #1699: 'UGGT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
UGGT1 MUTATED 0 0 2 0 1 0 1 0 0
UGGT1 WILD-TYPE 11 7 5 9 7 7 10 9 5
'CCDC19 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S17153.  Gene #1700: 'CCDC19 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CCDC19 MUTATED 2 0 1 1 0
CCDC19 WILD-TYPE 30 18 45 26 23
'CCDC19 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17154.  Gene #1700: 'CCDC19 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CCDC19 MUTATED 1 2 1
CCDC19 WILD-TYPE 42 65 35
'CCDC19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00552 (Fisher's exact test), Q value = 0.07

Table S17155.  Gene #1700: 'CCDC19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCDC19 MUTATED 1 2 12
CCDC19 WILD-TYPE 41 171 135

Figure S4344.  Get High-res Image Gene #1700: 'CCDC19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0446 (Fisher's exact test), Q value = 0.22

Table S17156.  Gene #1700: 'CCDC19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCDC19 MUTATED 7 1 3
CCDC19 WILD-TYPE 55 72 72

Figure S4345.  Get High-res Image Gene #1700: 'CCDC19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CCDC19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S17157.  Gene #1700: 'CCDC19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCDC19 MUTATED 1 4 8
CCDC19 WILD-TYPE 69 116 92
'CCDC19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S17158.  Gene #1700: 'CCDC19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCDC19 MUTATED 2 0 3 1 0 6 0 1 0
CCDC19 WILD-TYPE 39 26 27 28 39 63 20 13 22
'CCDC19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00632 (Fisher's exact test), Q value = 0.074

Table S17159.  Gene #1700: 'CCDC19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCDC19 MUTATED 0 4 7 4
CCDC19 WILD-TYPE 100 68 65 117

Figure S4346.  Get High-res Image Gene #1700: 'CCDC19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CCDC19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0535 (Fisher's exact test), Q value = 0.25

Table S17160.  Gene #1700: 'CCDC19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCDC19 MUTATED 2 1 8 3 1
CCDC19 WILD-TYPE 57 74 66 116 37
'CCDC19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S17161.  Gene #1700: 'CCDC19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCDC19 MUTATED 0 6 4 2 2
CCDC19 WILD-TYPE 51 70 57 69 93
'CCDC19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S17162.  Gene #1700: 'CCDC19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCDC19 MUTATED 3 5 0 2 1 1 0 0 2
CCDC19 WILD-TYPE 66 43 39 14 52 19 21 38 48
'CCDC19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0658 (Fisher's exact test), Q value = 0.28

Table S17163.  Gene #1700: 'CCDC19 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CCDC19 MUTATED 0 0 2 1 3 0
CCDC19 WILD-TYPE 13 16 12 10 8 9
'CCDC19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S17164.  Gene #1700: 'CCDC19 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CCDC19 MUTATED 0 0 1 1 1 1 2 0 0
CCDC19 WILD-TYPE 11 7 6 8 7 6 9 9 5
'C13ORF23 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S17165.  Gene #1701: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C13ORF23 MUTATED 2 0 0 1 0
C13ORF23 WILD-TYPE 30 18 46 26 23
'C13ORF23 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S17166.  Gene #1701: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C13ORF23 MUTATED 2 1 0
C13ORF23 WILD-TYPE 41 66 36
'C13ORF23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S17167.  Gene #1701: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C13ORF23 MUTATED 1 3 8
C13ORF23 WILD-TYPE 41 170 139
'C13ORF23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S17168.  Gene #1701: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C13ORF23 MUTATED 4 1 4
C13ORF23 WILD-TYPE 58 72 71
'C13ORF23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.76

Table S17169.  Gene #1701: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C13ORF23 MUTATED 1 6 3
C13ORF23 WILD-TYPE 69 114 97
'C13ORF23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S17170.  Gene #1701: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C13ORF23 MUTATED 2 1 2 1 0 2 1 0 1
C13ORF23 WILD-TYPE 39 25 28 28 39 67 19 14 21
'C13ORF23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S17171.  Gene #1701: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C13ORF23 MUTATED 3 3 3 3
C13ORF23 WILD-TYPE 97 69 69 118
'C13ORF23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.46

Table S17172.  Gene #1701: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C13ORF23 MUTATED 1 4 4 1 2
C13ORF23 WILD-TYPE 58 71 70 118 36
'C13ORF23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S17173.  Gene #1701: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C13ORF23 MUTATED 2 4 2 1 3
C13ORF23 WILD-TYPE 49 72 59 70 92
'C13ORF23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0117 (Fisher's exact test), Q value = 0.1

Table S17174.  Gene #1701: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C13ORF23 MUTATED 3 2 0 2 0 3 0 2 0
C13ORF23 WILD-TYPE 66 46 39 14 53 17 21 36 50

Figure S4347.  Get High-res Image Gene #1701: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C13ORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.58

Table S17175.  Gene #1701: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C13ORF23 MUTATED 1 0 2 0 2 0
C13ORF23 WILD-TYPE 12 16 12 11 9 9
'C13ORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.98

Table S17176.  Gene #1701: 'C13ORF23 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C13ORF23 MUTATED 0 0 0 2 1 0 1 1 0
C13ORF23 WILD-TYPE 11 7 7 7 7 7 10 8 5
'SMC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0078 (Fisher's exact test), Q value = 0.083

Table S17177.  Gene #1702: 'SMC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SMC4 MUTATED 6 0 0 2 1
SMC4 WILD-TYPE 26 18 46 25 22

Figure S4348.  Get High-res Image Gene #1702: 'SMC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SMC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0204 (Fisher's exact test), Q value = 0.15

Table S17178.  Gene #1702: 'SMC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SMC4 MUTATED 6 1 2
SMC4 WILD-TYPE 37 66 34

Figure S4349.  Get High-res Image Gene #1702: 'SMC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.012

Table S17179.  Gene #1702: 'SMC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SMC4 MUTATED 0 2 15
SMC4 WILD-TYPE 42 171 132

Figure S4350.  Get High-res Image Gene #1702: 'SMC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S17180.  Gene #1702: 'SMC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SMC4 MUTATED 3 1 4
SMC4 WILD-TYPE 59 72 71
'SMC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.56

Table S17181.  Gene #1702: 'SMC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SMC4 MUTATED 2 3 7
SMC4 WILD-TYPE 68 117 93
'SMC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S17182.  Gene #1702: 'SMC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SMC4 MUTATED 0 1 2 0 2 5 2 0 0
SMC4 WILD-TYPE 41 25 28 29 37 64 18 14 22
'SMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.11

Table S17183.  Gene #1702: 'SMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SMC4 MUTATED 1 5 1 11
SMC4 WILD-TYPE 99 67 71 110

Figure S4351.  Get High-res Image Gene #1702: 'SMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.01 (Fisher's exact test), Q value = 0.094

Table S17184.  Gene #1702: 'SMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SMC4 MUTATED 0 2 5 5 6
SMC4 WILD-TYPE 59 73 69 114 32

Figure S4352.  Get High-res Image Gene #1702: 'SMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S17185.  Gene #1702: 'SMC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SMC4 MUTATED 1 4 1 2 8
SMC4 WILD-TYPE 50 72 60 69 87
'SMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S17186.  Gene #1702: 'SMC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SMC4 MUTATED 1 0 1 2 3 1 2 3 3
SMC4 WILD-TYPE 68 48 38 14 50 19 19 35 47
'KIF13A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S17187.  Gene #1703: 'KIF13A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIF13A MUTATED 2 0 1 3 0
KIF13A WILD-TYPE 30 18 45 24 23
'KIF13A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S17188.  Gene #1703: 'KIF13A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIF13A MUTATED 2 2 2
KIF13A WILD-TYPE 41 65 34
'KIF13A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00403 (Fisher's exact test), Q value = 0.057

Table S17189.  Gene #1703: 'KIF13A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIF13A MUTATED 1 4 16
KIF13A WILD-TYPE 41 169 131

Figure S4353.  Get High-res Image Gene #1703: 'KIF13A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIF13A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0793 (Fisher's exact test), Q value = 0.31

Table S17190.  Gene #1703: 'KIF13A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIF13A MUTATED 3 2 9
KIF13A WILD-TYPE 59 71 66
'KIF13A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S17191.  Gene #1703: 'KIF13A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIF13A MUTATED 2 6 9
KIF13A WILD-TYPE 68 114 91
'KIF13A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S17192.  Gene #1703: 'KIF13A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIF13A MUTATED 3 0 2 3 2 6 1 0 0
KIF13A WILD-TYPE 38 26 28 26 37 63 19 14 22
'KIF13A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00872 (Fisher's exact test), Q value = 0.088

Table S17193.  Gene #1703: 'KIF13A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIF13A MUTATED 1 8 7 5
KIF13A WILD-TYPE 99 64 65 116

Figure S4354.  Get High-res Image Gene #1703: 'KIF13A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIF13A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00221 (Fisher's exact test), Q value = 0.04

Table S17194.  Gene #1703: 'KIF13A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIF13A MUTATED 3 0 11 5 2
KIF13A WILD-TYPE 56 75 63 114 36

Figure S4355.  Get High-res Image Gene #1703: 'KIF13A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIF13A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 0.18

Table S17195.  Gene #1703: 'KIF13A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIF13A MUTATED 0 9 5 2 4
KIF13A WILD-TYPE 51 67 56 69 91

Figure S4356.  Get High-res Image Gene #1703: 'KIF13A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIF13A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0503 (Fisher's exact test), Q value = 0.24

Table S17196.  Gene #1703: 'KIF13A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIF13A MUTATED 3 8 0 2 3 1 0 1 2
KIF13A WILD-TYPE 66 40 39 14 50 19 21 37 48
'KIF13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.65

Table S17197.  Gene #1703: 'KIF13A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KIF13A MUTATED 0 1 0 1 2 0
KIF13A WILD-TYPE 13 15 14 10 9 9
'KIF13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S17198.  Gene #1703: 'KIF13A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KIF13A MUTATED 0 0 1 0 0 1 2 0 0
KIF13A WILD-TYPE 11 7 6 9 8 6 9 9 5
'DONSON MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S17199.  Gene #1704: 'DONSON MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DONSON MUTATED 1 1 2
DONSON WILD-TYPE 41 172 145
'DONSON MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0363 (Fisher's exact test), Q value = 0.2

Table S17200.  Gene #1704: 'DONSON MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DONSON MUTATED 0 0 4
DONSON WILD-TYPE 62 73 71

Figure S4357.  Get High-res Image Gene #1704: 'DONSON MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DONSON MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S17201.  Gene #1704: 'DONSON MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DONSON MUTATED 0 3 1
DONSON WILD-TYPE 70 117 99
'DONSON MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 0.87

Table S17202.  Gene #1704: 'DONSON MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DONSON MUTATED 0 0 1 1 0 1 1 0 0
DONSON WILD-TYPE 41 26 29 28 39 68 19 14 22
'DONSON MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.2

Table S17203.  Gene #1704: 'DONSON MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DONSON MUTATED 1 3 0 0
DONSON WILD-TYPE 99 69 72 121

Figure S4358.  Get High-res Image Gene #1704: 'DONSON MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DONSON MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0853 (Fisher's exact test), Q value = 0.32

Table S17204.  Gene #1704: 'DONSON MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DONSON MUTATED 0 1 3 0 0
DONSON WILD-TYPE 59 74 71 119 38
'DONSON MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S17205.  Gene #1704: 'DONSON MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DONSON MUTATED 1 2 0 1 0
DONSON WILD-TYPE 50 74 61 70 95
'DONSON MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0485 (Fisher's exact test), Q value = 0.24

Table S17206.  Gene #1704: 'DONSON MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DONSON MUTATED 1 0 0 2 1 0 0 0 0
DONSON WILD-TYPE 68 48 39 14 52 20 21 38 50

Figure S4359.  Get High-res Image Gene #1704: 'DONSON MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLC26A7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S17207.  Gene #1705: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC26A7 MUTATED 3 0 2 3 0
SLC26A7 WILD-TYPE 29 18 44 24 23
'SLC26A7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.5

Table S17208.  Gene #1705: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC26A7 MUTATED 4 4 0
SLC26A7 WILD-TYPE 39 63 36
'SLC26A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.15

Table S17209.  Gene #1705: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC26A7 MUTATED 2 3 12
SLC26A7 WILD-TYPE 40 170 135

Figure S4360.  Get High-res Image Gene #1705: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC26A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.11

Table S17210.  Gene #1705: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC26A7 MUTATED 6 0 3
SLC26A7 WILD-TYPE 56 73 72

Figure S4361.  Get High-res Image Gene #1705: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SLC26A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S17211.  Gene #1705: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC26A7 MUTATED 1 6 7
SLC26A7 WILD-TYPE 69 114 93
'SLC26A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S17212.  Gene #1705: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC26A7 MUTATED 2 1 2 2 1 6 0 0 0
SLC26A7 WILD-TYPE 39 25 28 27 38 63 20 14 22
'SLC26A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S17213.  Gene #1705: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC26A7 MUTATED 1 5 3 8
SLC26A7 WILD-TYPE 99 67 69 113
'SLC26A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.57

Table S17214.  Gene #1705: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC26A7 MUTATED 1 2 5 5 4
SLC26A7 WILD-TYPE 58 73 69 114 34
'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S17215.  Gene #1705: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC26A7 MUTATED 0 6 1 3 6
SLC26A7 WILD-TYPE 51 70 60 68 89
'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S17216.  Gene #1705: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC26A7 MUTATED 3 2 1 2 1 1 0 2 4
SLC26A7 WILD-TYPE 66 46 38 14 52 19 21 36 46
'ACSL3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0747 (Fisher's exact test), Q value = 0.3

Table S17217.  Gene #1706: 'ACSL3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ACSL3 MUTATED 3 0 0 2 0
ACSL3 WILD-TYPE 29 18 46 25 23
'ACSL3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S17218.  Gene #1706: 'ACSL3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ACSL3 MUTATED 2 2 1
ACSL3 WILD-TYPE 41 65 35
'ACSL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.53

Table S17219.  Gene #1706: 'ACSL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ACSL3 MUTATED 0 3 7
ACSL3 WILD-TYPE 42 170 140
'ACSL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S17220.  Gene #1706: 'ACSL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ACSL3 MUTATED 2 0 3
ACSL3 WILD-TYPE 60 73 72
'ACSL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17221.  Gene #1706: 'ACSL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ACSL3 MUTATED 2 3 2
ACSL3 WILD-TYPE 68 117 98
'ACSL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S17222.  Gene #1706: 'ACSL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ACSL3 MUTATED 1 0 2 1 2 0 1 0 0
ACSL3 WILD-TYPE 40 26 28 28 37 69 19 14 22
'ACSL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 0.26

Table S17223.  Gene #1706: 'ACSL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ACSL3 MUTATED 0 4 1 5
ACSL3 WILD-TYPE 100 68 71 116
'ACSL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.98

Table S17224.  Gene #1706: 'ACSL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ACSL3 MUTATED 1 1 3 3 2
ACSL3 WILD-TYPE 58 74 71 116 36
'ACSL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.56

Table S17225.  Gene #1706: 'ACSL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ACSL3 MUTATED 0 4 0 2 4
ACSL3 WILD-TYPE 51 72 61 69 91
'ACSL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 0.97

Table S17226.  Gene #1706: 'ACSL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ACSL3 MUTATED 3 1 0 0 2 2 0 1 1
ACSL3 WILD-TYPE 66 47 39 16 51 18 21 37 49
'CDC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S17227.  Gene #1707: 'CDC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CDC7 MUTATED 1 2 7
CDC7 WILD-TYPE 41 171 140
'CDC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S17228.  Gene #1707: 'CDC7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CDC7 MUTATED 4 3 1
CDC7 WILD-TYPE 58 70 74
'CDC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.57

Table S17229.  Gene #1707: 'CDC7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CDC7 MUTATED 0 5 3
CDC7 WILD-TYPE 70 115 97
'CDC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 0.96

Table S17230.  Gene #1707: 'CDC7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CDC7 MUTATED 1 0 0 0 2 2 1 1 1
CDC7 WILD-TYPE 40 26 30 29 37 67 19 13 21
'CDC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S17231.  Gene #1707: 'CDC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CDC7 MUTATED 2 2 4 2
CDC7 WILD-TYPE 98 70 68 119
'CDC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0518 (Fisher's exact test), Q value = 0.24

Table S17232.  Gene #1707: 'CDC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CDC7 MUTATED 2 2 4 0 2
CDC7 WILD-TYPE 57 73 70 119 36
'CDC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.89

Table S17233.  Gene #1707: 'CDC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CDC7 MUTATED 3 3 1 1 2
CDC7 WILD-TYPE 48 73 60 70 93
'CDC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S17234.  Gene #1707: 'CDC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CDC7 MUTATED 2 3 1 0 2 0 0 2 0
CDC7 WILD-TYPE 67 45 38 16 51 20 21 36 50
'C12ORF51 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00347 (Fisher's exact test), Q value = 0.052

Table S17235.  Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C12ORF51 MUTATED 7 0 1 4 0
C12ORF51 WILD-TYPE 25 18 45 23 23

Figure S4362.  Get High-res Image Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'C12ORF51 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00625 (Fisher's exact test), Q value = 0.074

Table S17236.  Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C12ORF51 MUTATED 8 4 0
C12ORF51 WILD-TYPE 35 63 36

Figure S4363.  Get High-res Image Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'C12ORF51 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0048

Table S17237.  Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C12ORF51 MUTATED 3 4 23
C12ORF51 WILD-TYPE 39 169 124

Figure S4364.  Get High-res Image Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C12ORF51 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.099

Table S17238.  Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C12ORF51 MUTATED 9 1 8
C12ORF51 WILD-TYPE 53 72 67

Figure S4365.  Get High-res Image Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C12ORF51 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.16

Table S17239.  Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C12ORF51 MUTATED 2 10 15
C12ORF51 WILD-TYPE 68 110 85

Figure S4366.  Get High-res Image Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C12ORF51 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S17240.  Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C12ORF51 MUTATED 2 4 1 2 4 10 1 2 1
C12ORF51 WILD-TYPE 39 22 29 27 35 59 19 12 21
'C12ORF51 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00613 (Fisher's exact test), Q value = 0.074

Table S17241.  Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C12ORF51 MUTATED 2 12 6 11
C12ORF51 WILD-TYPE 98 60 66 110

Figure S4367.  Get High-res Image Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C12ORF51 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S17242.  Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C12ORF51 MUTATED 3 1 13 5 9
C12ORF51 WILD-TYPE 56 74 61 114 29

Figure S4368.  Get High-res Image Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C12ORF51 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00083 (Fisher's exact test), Q value = 0.022

Table S17243.  Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C12ORF51 MUTATED 0 12 3 2 13
C12ORF51 WILD-TYPE 51 64 58 69 82

Figure S4369.  Get High-res Image Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C12ORF51 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00238 (Fisher's exact test), Q value = 0.041

Table S17244.  Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C12ORF51 MUTATED 5 3 1 6 2 1 1 8 3
C12ORF51 WILD-TYPE 64 45 38 10 51 19 20 30 47

Figure S4370.  Get High-res Image Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C12ORF51 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00421 (Fisher's exact test), Q value = 0.059

Table S17245.  Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
C12ORF51 MUTATED 0 1 0 1 5 1
C12ORF51 WILD-TYPE 13 15 14 10 6 8

Figure S4371.  Get High-res Image Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'C12ORF51 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.63

Table S17246.  Gene #1708: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
C12ORF51 MUTATED 2 0 0 3 0 1 2 0 0
C12ORF51 WILD-TYPE 9 7 7 6 8 6 9 9 5
'LARP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S17247.  Gene #1709: 'LARP7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LARP7 MUTATED 0 2 6
LARP7 WILD-TYPE 42 171 141
'LARP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.78

Table S17248.  Gene #1709: 'LARP7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LARP7 MUTATED 3 1 4
LARP7 WILD-TYPE 59 72 71
'LARP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S17249.  Gene #1709: 'LARP7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LARP7 MUTATED 1 2 3
LARP7 WILD-TYPE 69 118 97
'LARP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S17250.  Gene #1709: 'LARP7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LARP7 MUTATED 1 0 2 0 1 2 0 0 0
LARP7 WILD-TYPE 40 26 28 29 38 67 20 14 22
'LARP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.12

Table S17251.  Gene #1709: 'LARP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LARP7 MUTATED 1 3 4 0
LARP7 WILD-TYPE 99 69 68 121

Figure S4372.  Get High-res Image Gene #1709: 'LARP7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LARP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.12

Table S17252.  Gene #1709: 'LARP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LARP7 MUTATED 2 1 5 0 0
LARP7 WILD-TYPE 57 74 69 119 38

Figure S4373.  Get High-res Image Gene #1709: 'LARP7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LARP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0467 (Fisher's exact test), Q value = 0.23

Table S17253.  Gene #1709: 'LARP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LARP7 MUTATED 0 3 4 0 1
LARP7 WILD-TYPE 51 73 57 71 94

Figure S4374.  Get High-res Image Gene #1709: 'LARP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LARP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S17254.  Gene #1709: 'LARP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LARP7 MUTATED 2 4 0 0 0 1 0 1 0
LARP7 WILD-TYPE 67 44 39 16 53 19 21 37 50
'TRIP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00108 (Fisher's exact test), Q value = 0.026

Table S17255.  Gene #1710: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRIP6 MUTATED 1 0 9
TRIP6 WILD-TYPE 41 173 138

Figure S4375.  Get High-res Image Gene #1710: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TRIP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00942 (Fisher's exact test), Q value = 0.091

Table S17256.  Gene #1710: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRIP6 MUTATED 2 0 7
TRIP6 WILD-TYPE 60 73 68

Figure S4376.  Get High-res Image Gene #1710: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TRIP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.99

Table S17257.  Gene #1710: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRIP6 MUTATED 2 2 3
TRIP6 WILD-TYPE 68 118 97
'TRIP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S17258.  Gene #1710: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRIP6 MUTATED 1 0 0 2 0 3 1 0 0
TRIP6 WILD-TYPE 40 26 30 27 39 66 19 14 22
'TRIP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.009

Table S17259.  Gene #1710: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRIP6 MUTATED 0 6 4 0
TRIP6 WILD-TYPE 100 66 68 121

Figure S4377.  Get High-res Image Gene #1710: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TRIP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00084 (Fisher's exact test), Q value = 0.022

Table S17260.  Gene #1710: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRIP6 MUTATED 0 1 8 1 0
TRIP6 WILD-TYPE 59 74 66 118 38

Figure S4378.  Get High-res Image Gene #1710: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TRIP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00083 (Fisher's exact test), Q value = 0.022

Table S17261.  Gene #1710: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRIP6 MUTATED 0 8 1 0 1
TRIP6 WILD-TYPE 51 68 60 71 94

Figure S4379.  Get High-res Image Gene #1710: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TRIP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0361 (Fisher's exact test), Q value = 0.2

Table S17262.  Gene #1710: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRIP6 MUTATED 2 3 0 3 1 0 0 1 0
TRIP6 WILD-TYPE 67 45 39 13 52 20 21 37 50

Figure S4380.  Get High-res Image Gene #1710: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TRIP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S17263.  Gene #1710: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TRIP6 MUTATED 0 1 1 0 2 0
TRIP6 WILD-TYPE 13 15 13 11 9 9
'TRIP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S17264.  Gene #1710: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TRIP6 MUTATED 0 0 0 1 0 0 3 0 0
TRIP6 WILD-TYPE 11 7 7 8 8 7 8 9 5
'FOLR3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S17265.  Gene #1711: 'FOLR3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FOLR3 MUTATED 2 0 0 0 1
FOLR3 WILD-TYPE 30 18 46 27 22
'FOLR3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S17266.  Gene #1711: 'FOLR3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FOLR3 MUTATED 2 0 1
FOLR3 WILD-TYPE 41 67 35
'FOLR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S17267.  Gene #1711: 'FOLR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FOLR3 MUTATED 0 2 4
FOLR3 WILD-TYPE 42 171 143
'FOLR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S17268.  Gene #1711: 'FOLR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FOLR3 MUTATED 1 0 2
FOLR3 WILD-TYPE 61 73 73
'FOLR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S17269.  Gene #1711: 'FOLR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FOLR3 MUTATED 2 1 2
FOLR3 WILD-TYPE 68 119 98
'FOLR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S17270.  Gene #1711: 'FOLR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FOLR3 MUTATED 1 0 0 1 2 1 0 0 0
FOLR3 WILD-TYPE 40 26 30 28 37 68 20 14 22
'FOLR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.75

Table S17271.  Gene #1711: 'FOLR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FOLR3 MUTATED 0 2 1 3
FOLR3 WILD-TYPE 100 70 71 118
'FOLR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.92

Table S17272.  Gene #1711: 'FOLR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FOLR3 MUTATED 1 0 2 2 1
FOLR3 WILD-TYPE 58 75 72 117 37
'FOLR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.96

Table S17273.  Gene #1711: 'FOLR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FOLR3 MUTATED 0 2 0 2 2
FOLR3 WILD-TYPE 51 74 61 69 93
'FOLR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S17274.  Gene #1711: 'FOLR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FOLR3 MUTATED 2 1 0 0 0 0 1 1 1
FOLR3 WILD-TYPE 67 47 39 16 53 20 20 37 49
'ANKRD40 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.89

Table S17275.  Gene #1712: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ANKRD40 MUTATED 2 0 1 0 0
ANKRD40 WILD-TYPE 30 18 45 27 23
'ANKRD40 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S17276.  Gene #1712: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ANKRD40 MUTATED 2 0 1
ANKRD40 WILD-TYPE 41 67 35
'ANKRD40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00319 (Fisher's exact test), Q value = 0.049

Table S17277.  Gene #1712: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ANKRD40 MUTATED 3 0 5
ANKRD40 WILD-TYPE 39 173 142

Figure S4381.  Get High-res Image Gene #1712: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ANKRD40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0821 (Fisher's exact test), Q value = 0.31

Table S17278.  Gene #1712: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ANKRD40 MUTATED 1 0 4
ANKRD40 WILD-TYPE 61 73 71
'ANKRD40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S17279.  Gene #1712: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ANKRD40 MUTATED 3 3 1
ANKRD40 WILD-TYPE 67 117 99
'ANKRD40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S17280.  Gene #1712: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ANKRD40 MUTATED 1 0 0 1 3 1 1 0 0
ANKRD40 WILD-TYPE 40 26 30 28 36 68 19 14 22
'ANKRD40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S17281.  Gene #1712: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ANKRD40 MUTATED 0 3 2 3
ANKRD40 WILD-TYPE 100 69 70 118
'ANKRD40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00848 (Fisher's exact test), Q value = 0.086

Table S17282.  Gene #1712: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ANKRD40 MUTATED 0 0 5 1 2
ANKRD40 WILD-TYPE 59 75 69 118 36

Figure S4382.  Get High-res Image Gene #1712: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S17283.  Gene #1712: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ANKRD40 MUTATED 0 4 0 3 1
ANKRD40 WILD-TYPE 51 72 61 68 94
'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S17284.  Gene #1712: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ANKRD40 MUTATED 1 1 0 1 2 0 0 2 1
ANKRD40 WILD-TYPE 68 47 39 15 51 20 21 36 49
'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S17285.  Gene #1712: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ANKRD40 MUTATED 0 1 1 0 1 0
ANKRD40 WILD-TYPE 13 15 13 11 10 9
'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S17286.  Gene #1712: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ANKRD40 MUTATED 0 0 0 1 0 0 2 0 0
ANKRD40 WILD-TYPE 11 7 7 8 8 7 9 9 5
'MRPL10 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17287.  Gene #1713: 'MRPL10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MRPL10 MUTATED 0 2 2
MRPL10 WILD-TYPE 42 171 145
'MRPL10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S17288.  Gene #1713: 'MRPL10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MRPL10 MUTATED 2 0 1
MRPL10 WILD-TYPE 60 73 74
'MRPL10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S17289.  Gene #1713: 'MRPL10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MRPL10 MUTATED 1 1 2
MRPL10 WILD-TYPE 69 119 98
'MRPL10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17290.  Gene #1713: 'MRPL10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MRPL10 MUTATED 1 0 0 0 1 2 0 0 0
MRPL10 WILD-TYPE 40 26 30 29 38 67 20 14 22
'MRPL10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S17291.  Gene #1713: 'MRPL10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MRPL10 MUTATED 1 0 1 2
MRPL10 WILD-TYPE 99 72 71 119
'MRPL10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.91

Table S17292.  Gene #1713: 'MRPL10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MRPL10 MUTATED 1 0 1 1 1
MRPL10 WILD-TYPE 58 75 73 118 37
'MRPL10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S17293.  Gene #1713: 'MRPL10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MRPL10 MUTATED 1 2 0 0 0
MRPL10 WILD-TYPE 50 74 61 71 95
'MRPL10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.81

Table S17294.  Gene #1713: 'MRPL10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MRPL10 MUTATED 0 2 0 0 1 0 0 0 0
MRPL10 WILD-TYPE 69 46 39 16 52 20 21 38 50
'ACADVL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.91

Table S17295.  Gene #1714: 'ACADVL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ACADVL MUTATED 1 2 3
ACADVL WILD-TYPE 41 171 144
'ACADVL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S17296.  Gene #1714: 'ACADVL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ACADVL MUTATED 1 1 3
ACADVL WILD-TYPE 61 72 72
'ACADVL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S17297.  Gene #1714: 'ACADVL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ACADVL MUTATED 0 2 3
ACADVL WILD-TYPE 70 118 97
'ACADVL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S17298.  Gene #1714: 'ACADVL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ACADVL MUTATED 0 1 0 0 0 3 1 0 0
ACADVL WILD-TYPE 41 25 30 29 39 66 19 14 22
'ACADVL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S17299.  Gene #1714: 'ACADVL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ACADVL MUTATED 2 2 1 1
ACADVL WILD-TYPE 98 70 71 120
'ACADVL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.62

Table S17300.  Gene #1714: 'ACADVL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ACADVL MUTATED 0 2 3 1 0
ACADVL WILD-TYPE 59 73 71 118 38
'ACADVL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S17301.  Gene #1714: 'ACADVL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ACADVL MUTATED 0 4 0 1 1
ACADVL WILD-TYPE 51 72 61 70 94
'ACADVL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.43

Table S17302.  Gene #1714: 'ACADVL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ACADVL MUTATED 3 0 0 1 0 1 0 1 0
ACADVL WILD-TYPE 66 48 39 15 53 19 21 37 50
'SLIT3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.99

Table S17303.  Gene #1715: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLIT3 MUTATED 3 1 1 1 1
SLIT3 WILD-TYPE 29 17 45 26 22
'SLIT3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0211 (Fisher's exact test), Q value = 0.15

Table S17304.  Gene #1715: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLIT3 MUTATED 4 0 3
SLIT3 WILD-TYPE 39 67 33

Figure S4383.  Get High-res Image Gene #1715: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SLIT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0044

Table S17305.  Gene #1715: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLIT3 MUTATED 0 4 21
SLIT3 WILD-TYPE 42 169 126

Figure S4384.  Get High-res Image Gene #1715: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLIT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S17306.  Gene #1715: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLIT3 MUTATED 4 5 9
SLIT3 WILD-TYPE 58 68 66
'SLIT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S17307.  Gene #1715: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLIT3 MUTATED 4 9 9
SLIT3 WILD-TYPE 66 111 91
'SLIT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S17308.  Gene #1715: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLIT3 MUTATED 3 0 1 3 4 8 2 1 0
SLIT3 WILD-TYPE 38 26 29 26 35 61 18 13 22
'SLIT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0348 (Fisher's exact test), Q value = 0.2

Table S17309.  Gene #1715: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLIT3 MUTATED 4 11 4 6
SLIT3 WILD-TYPE 96 61 68 115

Figure S4385.  Get High-res Image Gene #1715: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLIT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0696 (Fisher's exact test), Q value = 0.28

Table S17310.  Gene #1715: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLIT3 MUTATED 2 6 10 4 3
SLIT3 WILD-TYPE 57 69 64 115 35
'SLIT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0986 (Fisher's exact test), Q value = 0.34

Table S17311.  Gene #1715: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLIT3 MUTATED 3 11 3 3 4
SLIT3 WILD-TYPE 48 65 58 68 91
'SLIT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00139 (Fisher's exact test), Q value = 0.031

Table S17312.  Gene #1715: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLIT3 MUTATED 6 3 1 6 2 2 2 2 0
SLIT3 WILD-TYPE 63 45 38 10 51 18 19 36 50

Figure S4386.  Get High-res Image Gene #1715: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLIT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S17313.  Gene #1715: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLIT3 MUTATED 1 1 0 0 3 0
SLIT3 WILD-TYPE 12 15 14 11 8 9
'SLIT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.65

Table S17314.  Gene #1715: 'SLIT3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLIT3 MUTATED 0 1 0 2 1 1 0 0 0
SLIT3 WILD-TYPE 11 6 7 7 7 6 11 9 5
'CCL14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 0.27

Table S17315.  Gene #1716: 'CCL14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCL14 MUTATED 1 0 4
CCL14 WILD-TYPE 41 173 143
'CCL14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0359 (Fisher's exact test), Q value = 0.2

Table S17316.  Gene #1716: 'CCL14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCL14 MUTATED 0 0 4
CCL14 WILD-TYPE 62 73 71

Figure S4387.  Get High-res Image Gene #1716: 'CCL14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CCL14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S17317.  Gene #1716: 'CCL14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCL14 MUTATED 0 3 2
CCL14 WILD-TYPE 70 117 98
'CCL14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S17318.  Gene #1716: 'CCL14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCL14 MUTATED 0 0 0 3 0 2 0 0 0
CCL14 WILD-TYPE 41 26 30 26 39 67 20 14 22
'CCL14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S17319.  Gene #1716: 'CCL14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCL14 MUTATED 0 4 0 1
CCL14 WILD-TYPE 100 68 72 120

Figure S4388.  Get High-res Image Gene #1716: 'CCL14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CCL14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00641 (Fisher's exact test), Q value = 0.075

Table S17320.  Gene #1716: 'CCL14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCL14 MUTATED 0 0 4 0 1
CCL14 WILD-TYPE 59 75 70 119 37

Figure S4389.  Get High-res Image Gene #1716: 'CCL14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCL14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00662 (Fisher's exact test), Q value = 0.076

Table S17321.  Gene #1716: 'CCL14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCL14 MUTATED 0 4 0 0 0
CCL14 WILD-TYPE 51 72 61 71 95

Figure S4390.  Get High-res Image Gene #1716: 'CCL14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CCL14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0401 (Fisher's exact test), Q value = 0.21

Table S17322.  Gene #1716: 'CCL14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCL14 MUTATED 1 1 0 2 0 0 0 0 0
CCL14 WILD-TYPE 68 47 39 14 53 20 21 38 50

Figure S4391.  Get High-res Image Gene #1716: 'CCL14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KLK11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.19

Table S17323.  Gene #1717: 'KLK11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KLK11 MUTATED 0 0 5
KLK11 WILD-TYPE 42 173 142

Figure S4392.  Get High-res Image Gene #1717: 'KLK11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KLK11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.037 (Fisher's exact test), Q value = 0.2

Table S17324.  Gene #1717: 'KLK11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KLK11 MUTATED 0 0 4
KLK11 WILD-TYPE 62 73 71

Figure S4393.  Get High-res Image Gene #1717: 'KLK11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KLK11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17325.  Gene #1717: 'KLK11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KLK11 MUTATED 1 1 1
KLK11 WILD-TYPE 69 119 99
'KLK11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S17326.  Gene #1717: 'KLK11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KLK11 MUTATED 0 0 1 0 1 1 0 0 0
KLK11 WILD-TYPE 41 26 29 29 38 68 20 14 22
'KLK11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S17327.  Gene #1717: 'KLK11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KLK11 MUTATED 0 3 1 1
KLK11 WILD-TYPE 100 69 71 120
'KLK11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0067 (Fisher's exact test), Q value = 0.077

Table S17328.  Gene #1717: 'KLK11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KLK11 MUTATED 0 0 4 0 1
KLK11 WILD-TYPE 59 75 70 119 37

Figure S4394.  Get High-res Image Gene #1717: 'KLK11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KLK11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.63

Table S17329.  Gene #1717: 'KLK11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KLK11 MUTATED 0 3 1 0 1
KLK11 WILD-TYPE 51 73 60 71 94
'KLK11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0765 (Fisher's exact test), Q value = 0.3

Table S17330.  Gene #1717: 'KLK11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KLK11 MUTATED 1 1 0 2 0 0 0 1 0
KLK11 WILD-TYPE 68 47 39 14 53 20 21 37 50
'UBR5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S17331.  Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
UBR5 MUTATED 2 0 1 1 0
UBR5 WILD-TYPE 30 18 45 26 23
'UBR5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17332.  Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
UBR5 MUTATED 1 2 1
UBR5 WILD-TYPE 42 65 35
'UBR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00248 (Fisher's exact test), Q value = 0.042

Table S17333.  Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UBR5 MUTATED 2 6 20
UBR5 WILD-TYPE 40 167 127

Figure S4395.  Get High-res Image Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UBR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00954 (Fisher's exact test), Q value = 0.092

Table S17334.  Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UBR5 MUTATED 6 3 15
UBR5 WILD-TYPE 56 70 60

Figure S4396.  Get High-res Image Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'UBR5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S17335.  Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UBR5 MUTATED 6 11 7
UBR5 WILD-TYPE 64 109 93
'UBR5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 0.21

Table S17336.  Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UBR5 MUTATED 1 1 3 7 1 4 3 2 2
UBR5 WILD-TYPE 40 25 27 22 38 65 17 12 20

Figure S4397.  Get High-res Image Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'UBR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00661 (Fisher's exact test), Q value = 0.076

Table S17337.  Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UBR5 MUTATED 5 12 7 4
UBR5 WILD-TYPE 95 60 65 117

Figure S4398.  Get High-res Image Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'UBR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00081 (Fisher's exact test), Q value = 0.022

Table S17338.  Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UBR5 MUTATED 2 9 13 3 1
UBR5 WILD-TYPE 57 66 61 116 37

Figure S4399.  Get High-res Image Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'UBR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00273 (Fisher's exact test), Q value = 0.045

Table S17339.  Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UBR5 MUTATED 3 15 3 4 3
UBR5 WILD-TYPE 48 61 58 67 92

Figure S4400.  Get High-res Image Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'UBR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0511 (Fisher's exact test), Q value = 0.24

Table S17340.  Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UBR5 MUTATED 4 5 3 5 6 2 0 1 2
UBR5 WILD-TYPE 65 43 36 11 47 18 21 37 48
'UBR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00214 (Fisher's exact test), Q value = 0.039

Table S17341.  Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
UBR5 MUTATED 0 0 1 0 4 3
UBR5 WILD-TYPE 13 16 13 11 7 6

Figure S4401.  Get High-res Image Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'UBR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S17342.  Gene #1718: 'UBR5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
UBR5 MUTATED 1 0 0 1 2 0 2 2 0
UBR5 WILD-TYPE 10 7 7 8 6 7 9 7 5
'ZNF557 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.14

Table S17343.  Gene #1719: 'ZNF557 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF557 MUTATED 0 1 8
ZNF557 WILD-TYPE 42 172 139

Figure S4402.  Get High-res Image Gene #1719: 'ZNF557 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF557 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.77

Table S17344.  Gene #1719: 'ZNF557 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF557 MUTATED 3 1 4
ZNF557 WILD-TYPE 59 72 71
'ZNF557 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.36

Table S17345.  Gene #1719: 'ZNF557 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF557 MUTATED 0 2 5
ZNF557 WILD-TYPE 70 118 95
'ZNF557 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S17346.  Gene #1719: 'ZNF557 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF557 MUTATED 0 2 0 0 0 3 2 0 0
ZNF557 WILD-TYPE 41 24 30 29 39 66 18 14 22
'ZNF557 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0995 (Fisher's exact test), Q value = 0.34

Table S17347.  Gene #1719: 'ZNF557 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF557 MUTATED 1 5 1 2
ZNF557 WILD-TYPE 99 67 71 119
'ZNF557 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0757 (Fisher's exact test), Q value = 0.3

Table S17348.  Gene #1719: 'ZNF557 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF557 MUTATED 0 2 5 1 1
ZNF557 WILD-TYPE 59 73 69 118 37
'ZNF557 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.085 (Fisher's exact test), Q value = 0.32

Table S17349.  Gene #1719: 'ZNF557 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF557 MUTATED 0 5 1 0 3
ZNF557 WILD-TYPE 51 71 60 71 92
'ZNF557 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.029 (Fisher's exact test), Q value = 0.18

Table S17350.  Gene #1719: 'ZNF557 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF557 MUTATED 1 1 0 2 0 2 1 0 2
ZNF557 WILD-TYPE 68 47 39 14 53 18 20 38 48

Figure S4403.  Get High-res Image Gene #1719: 'ZNF557 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'UVRAG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S17351.  Gene #1720: 'UVRAG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UVRAG MUTATED 0 3 4
UVRAG WILD-TYPE 42 170 143
'UVRAG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S17352.  Gene #1720: 'UVRAG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UVRAG MUTATED 4 1 1
UVRAG WILD-TYPE 58 72 74
'UVRAG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S17353.  Gene #1720: 'UVRAG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UVRAG MUTATED 0 3 2
UVRAG WILD-TYPE 70 117 98
'UVRAG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S17354.  Gene #1720: 'UVRAG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UVRAG MUTATED 2 1 0 0 1 1 0 0 0
UVRAG WILD-TYPE 39 25 30 29 38 68 20 14 22
'UVRAG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S17355.  Gene #1720: 'UVRAG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UVRAG MUTATED 2 0 3 2
UVRAG WILD-TYPE 98 72 69 119
'UVRAG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S17356.  Gene #1720: 'UVRAG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UVRAG MUTATED 2 2 1 2 0
UVRAG WILD-TYPE 57 73 73 117 38
'UVRAG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S17357.  Gene #1720: 'UVRAG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UVRAG MUTATED 2 2 1 1 1
UVRAG WILD-TYPE 49 74 60 70 94
'UVRAG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S17358.  Gene #1720: 'UVRAG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UVRAG MUTATED 1 3 1 0 1 0 0 0 1
UVRAG WILD-TYPE 68 45 38 16 52 20 21 38 49
'C14ORF118 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S17359.  Gene #1721: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C14ORF118 MUTATED 1 1 0 1 0
C14ORF118 WILD-TYPE 31 17 46 26 23
'C14ORF118 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S17360.  Gene #1721: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C14ORF118 MUTATED 0 2 1
C14ORF118 WILD-TYPE 43 65 35
'C14ORF118 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S17361.  Gene #1721: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C14ORF118 MUTATED 0 5 4
C14ORF118 WILD-TYPE 42 168 143
'C14ORF118 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17362.  Gene #1721: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C14ORF118 MUTATED 2 2 2
C14ORF118 WILD-TYPE 60 71 73
'C14ORF118 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S17363.  Gene #1721: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C14ORF118 MUTATED 1 3 4
C14ORF118 WILD-TYPE 69 117 96
'C14ORF118 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S17364.  Gene #1721: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C14ORF118 MUTATED 1 0 2 0 0 4 0 0 1
C14ORF118 WILD-TYPE 40 26 28 29 39 65 20 14 21
'C14ORF118 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S17365.  Gene #1721: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C14ORF118 MUTATED 3 2 1 3
C14ORF118 WILD-TYPE 97 70 71 118
'C14ORF118 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S17366.  Gene #1721: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C14ORF118 MUTATED 2 3 1 3 0
C14ORF118 WILD-TYPE 57 72 73 116 38
'C14ORF118 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S17367.  Gene #1721: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C14ORF118 MUTATED 0 3 2 2 1
C14ORF118 WILD-TYPE 51 73 59 69 94
'C14ORF118 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S17368.  Gene #1721: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C14ORF118 MUTATED 4 1 0 0 2 1 0 0 0
C14ORF118 WILD-TYPE 65 47 39 16 51 19 21 38 50
'XKR3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.25

Table S17369.  Gene #1722: 'XKR3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
XKR3 MUTATED 3 0 0 0 0
XKR3 WILD-TYPE 29 18 46 27 23
'XKR3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S17370.  Gene #1722: 'XKR3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
XKR3 MUTATED 2 0 1
XKR3 WILD-TYPE 41 67 35
'XKR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.071 (Fisher's exact test), Q value = 0.29

Table S17371.  Gene #1722: 'XKR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
XKR3 MUTATED 0 3 9
XKR3 WILD-TYPE 42 170 138
'XKR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S17372.  Gene #1722: 'XKR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
XKR3 MUTATED 4 3 2
XKR3 WILD-TYPE 58 70 73
'XKR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.17

Table S17373.  Gene #1722: 'XKR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
XKR3 MUTATED 0 2 7
XKR3 WILD-TYPE 70 118 93

Figure S4404.  Get High-res Image Gene #1722: 'XKR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'XKR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S17374.  Gene #1722: 'XKR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
XKR3 MUTATED 1 0 0 1 1 5 0 0 1
XKR3 WILD-TYPE 40 26 30 28 38 64 20 14 21
'XKR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S17375.  Gene #1722: 'XKR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
XKR3 MUTATED 2 3 4 3
XKR3 WILD-TYPE 98 69 68 118
'XKR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.6

Table S17376.  Gene #1722: 'XKR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
XKR3 MUTATED 2 4 3 1 2
XKR3 WILD-TYPE 57 71 71 118 36
'XKR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S17377.  Gene #1722: 'XKR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
XKR3 MUTATED 2 5 1 2 2
XKR3 WILD-TYPE 49 71 60 69 93
'XKR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.77

Table S17378.  Gene #1722: 'XKR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
XKR3 MUTATED 1 3 0 0 4 1 0 2 1
XKR3 WILD-TYPE 68 45 39 16 49 19 21 36 49
'EPHA4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00163 (Fisher's exact test), Q value = 0.034

Table S17379.  Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EPHA4 MUTATED 5 0 0 0 0
EPHA4 WILD-TYPE 27 18 46 27 23

Figure S4405.  Get High-res Image Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EPHA4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00248 (Fisher's exact test), Q value = 0.042

Table S17380.  Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EPHA4 MUTATED 5 0 0
EPHA4 WILD-TYPE 38 67 36

Figure S4406.  Get High-res Image Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'EPHA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.014

Table S17381.  Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EPHA4 MUTATED 1 2 15
EPHA4 WILD-TYPE 41 171 132

Figure S4407.  Get High-res Image Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EPHA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.25

Table S17382.  Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EPHA4 MUTATED 2 2 9
EPHA4 WILD-TYPE 60 71 66
'EPHA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S17383.  Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EPHA4 MUTATED 2 11 5
EPHA4 WILD-TYPE 68 109 95
'EPHA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S17384.  Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EPHA4 MUTATED 1 2 0 2 3 6 3 0 1
EPHA4 WILD-TYPE 40 24 30 27 36 63 17 14 21
'EPHA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 0.31

Table S17385.  Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EPHA4 MUTATED 2 8 3 6
EPHA4 WILD-TYPE 98 64 69 115
'EPHA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00075 (Fisher's exact test), Q value = 0.021

Table S17386.  Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EPHA4 MUTATED 1 3 9 1 5
EPHA4 WILD-TYPE 58 72 65 118 33

Figure S4408.  Get High-res Image Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EPHA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 0.26

Table S17387.  Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EPHA4 MUTATED 1 9 1 2 6
EPHA4 WILD-TYPE 50 67 60 69 89
'EPHA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0236 (Fisher's exact test), Q value = 0.16

Table S17388.  Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EPHA4 MUTATED 3 3 0 4 4 0 0 4 1
EPHA4 WILD-TYPE 66 45 39 12 49 20 21 34 49

Figure S4409.  Get High-res Image Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EPHA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S17389.  Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EPHA4 MUTATED 1 1 0 0 2 0
EPHA4 WILD-TYPE 12 15 14 11 9 9
'EPHA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S17390.  Gene #1723: 'EPHA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EPHA4 MUTATED 0 0 1 2 1 0 0 0 0
EPHA4 WILD-TYPE 11 7 6 7 7 7 11 9 5
'PARVB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 0.3

Table S17391.  Gene #1724: 'PARVB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PARVB MUTATED 3 0 0 2 0
PARVB WILD-TYPE 29 18 46 25 23
'PARVB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0671 (Fisher's exact test), Q value = 0.28

Table S17392.  Gene #1724: 'PARVB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PARVB MUTATED 4 1 0
PARVB WILD-TYPE 39 66 36
'PARVB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00473 (Fisher's exact test), Q value = 0.064

Table S17393.  Gene #1724: 'PARVB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PARVB MUTATED 2 0 7
PARVB WILD-TYPE 40 173 140

Figure S4410.  Get High-res Image Gene #1724: 'PARVB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PARVB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S17394.  Gene #1724: 'PARVB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PARVB MUTATED 1 2 1
PARVB WILD-TYPE 61 71 74
'PARVB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17395.  Gene #1724: 'PARVB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PARVB MUTATED 1 3 2
PARVB WILD-TYPE 69 117 98
'PARVB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.8

Table S17396.  Gene #1724: 'PARVB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PARVB MUTATED 0 0 0 1 3 2 0 0 0
PARVB WILD-TYPE 41 26 30 28 36 67 20 14 22
'PARVB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S17397.  Gene #1724: 'PARVB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PARVB MUTATED 1 1 1 6
PARVB WILD-TYPE 99 71 71 115
'PARVB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00203 (Fisher's exact test), Q value = 0.038

Table S17398.  Gene #1724: 'PARVB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PARVB MUTATED 0 1 2 1 5
PARVB WILD-TYPE 59 74 72 118 33

Figure S4411.  Get High-res Image Gene #1724: 'PARVB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PARVB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.71

Table S17399.  Gene #1724: 'PARVB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PARVB MUTATED 1 2 0 1 5
PARVB WILD-TYPE 50 74 61 70 90
'PARVB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S17400.  Gene #1724: 'PARVB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PARVB MUTATED 0 1 0 1 1 1 1 3 1
PARVB WILD-TYPE 69 47 39 15 52 19 20 35 49
'TAF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.29

Table S17401.  Gene #1725: 'TAF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TAF2 MUTATED 3 0 0 2 0
TAF2 WILD-TYPE 29 18 46 25 23
'TAF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S17402.  Gene #1725: 'TAF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TAF2 MUTATED 3 2 0
TAF2 WILD-TYPE 40 65 36
'TAF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.21

Table S17403.  Gene #1725: 'TAF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TAF2 MUTATED 1 4 12
TAF2 WILD-TYPE 41 169 135

Figure S4412.  Get High-res Image Gene #1725: 'TAF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TAF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.17

Table S17404.  Gene #1725: 'TAF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TAF2 MUTATED 8 2 2
TAF2 WILD-TYPE 54 71 73

Figure S4413.  Get High-res Image Gene #1725: 'TAF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TAF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.61

Table S17405.  Gene #1725: 'TAF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TAF2 MUTATED 1 6 7
TAF2 WILD-TYPE 69 114 93
'TAF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S17406.  Gene #1725: 'TAF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TAF2 MUTATED 1 1 2 2 0 7 0 0 1
TAF2 WILD-TYPE 40 25 28 27 39 62 20 14 21
'TAF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S17407.  Gene #1725: 'TAF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TAF2 MUTATED 3 4 4 6
TAF2 WILD-TYPE 97 68 68 115
'TAF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.58

Table S17408.  Gene #1725: 'TAF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TAF2 MUTATED 1 5 5 3 3
TAF2 WILD-TYPE 58 70 69 116 35
'TAF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0401 (Fisher's exact test), Q value = 0.21

Table S17409.  Gene #1725: 'TAF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TAF2 MUTATED 0 8 1 2 6
TAF2 WILD-TYPE 51 68 60 69 89

Figure S4414.  Get High-res Image Gene #1725: 'TAF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TAF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.999 (Fisher's exact test), Q value = 1

Table S17410.  Gene #1725: 'TAF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TAF2 MUTATED 3 3 2 1 2 1 1 2 2
TAF2 WILD-TYPE 66 45 37 15 51 19 20 36 48
'TAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 0.25

Table S17411.  Gene #1725: 'TAF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TAF2 MUTATED 0 1 0 0 3 1
TAF2 WILD-TYPE 13 15 14 11 8 8
'TAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S17412.  Gene #1725: 'TAF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TAF2 MUTATED 1 0 0 1 0 0 2 1 0
TAF2 WILD-TYPE 10 7 7 8 8 7 9 8 5
'KIAA0196 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S17413.  Gene #1726: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KIAA0196 MUTATED 2 0 0 1 0
KIAA0196 WILD-TYPE 30 18 46 26 23
'KIAA0196 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S17414.  Gene #1726: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KIAA0196 MUTATED 2 1 0
KIAA0196 WILD-TYPE 41 66 36
'KIAA0196 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.76

Table S17415.  Gene #1726: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA0196 MUTATED 1 3 6
KIAA0196 WILD-TYPE 41 170 141
'KIAA0196 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17416.  Gene #1726: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA0196 MUTATED 2 2 3
KIAA0196 WILD-TYPE 60 71 72
'KIAA0196 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.26

Table S17417.  Gene #1726: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA0196 MUTATED 0 7 2
KIAA0196 WILD-TYPE 70 113 98
'KIAA0196 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.13

Table S17418.  Gene #1726: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA0196 MUTATED 0 0 2 2 0 1 3 1 0
KIAA0196 WILD-TYPE 41 26 28 27 39 68 17 13 22

Figure S4415.  Get High-res Image Gene #1726: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'KIAA0196 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.88

Table S17419.  Gene #1726: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA0196 MUTATED 4 3 1 2
KIAA0196 WILD-TYPE 96 69 71 119
'KIAA0196 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.09 (Fisher's exact test), Q value = 0.33

Table S17420.  Gene #1726: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA0196 MUTATED 0 4 3 1 2
KIAA0196 WILD-TYPE 59 71 71 118 36
'KIAA0196 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.96

Table S17421.  Gene #1726: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA0196 MUTATED 0 3 1 3 3
KIAA0196 WILD-TYPE 51 73 60 68 92
'KIAA0196 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S17422.  Gene #1726: 'KIAA0196 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA0196 MUTATED 4 1 1 0 1 2 0 1 0
KIAA0196 WILD-TYPE 65 47 38 16 52 18 21 37 50
'FRY MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.18

Table S17423.  Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FRY MUTATED 4 1 0 3 0
FRY WILD-TYPE 28 17 46 24 23

Figure S4416.  Get High-res Image Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FRY MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00144 (Fisher's exact test), Q value = 0.031

Table S17424.  Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FRY MUTATED 7 1 0
FRY WILD-TYPE 36 66 36

Figure S4417.  Get High-res Image Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FRY MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S17425.  Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FRY MUTATED 6 4 27
FRY WILD-TYPE 36 169 120

Figure S4418.  Get High-res Image Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FRY MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00089 (Fisher's exact test), Q value = 0.023

Table S17426.  Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FRY MUTATED 8 2 17
FRY WILD-TYPE 54 71 58

Figure S4419.  Get High-res Image Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FRY MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S17427.  Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FRY MUTATED 7 14 13
FRY WILD-TYPE 63 106 87
'FRY MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S17428.  Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FRY MUTATED 4 3 3 6 4 9 2 1 2
FRY WILD-TYPE 37 23 27 23 35 60 18 13 20
'FRY MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00304 (Fisher's exact test), Q value = 0.048

Table S17429.  Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FRY MUTATED 4 14 11 9
FRY WILD-TYPE 96 58 61 112

Figure S4420.  Get High-res Image Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FRY MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00028 (Fisher's exact test), Q value = 0.011

Table S17430.  Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FRY MUTATED 5 5 16 4 8
FRY WILD-TYPE 54 70 58 115 30

Figure S4421.  Get High-res Image Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FRY MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00741 (Fisher's exact test), Q value = 0.081

Table S17431.  Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FRY MUTATED 3 13 7 1 13
FRY WILD-TYPE 48 63 54 70 82

Figure S4422.  Get High-res Image Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FRY MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0372 (Fisher's exact test), Q value = 0.2

Table S17432.  Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FRY MUTATED 7 7 1 4 2 2 3 8 3
FRY WILD-TYPE 62 41 38 12 51 18 18 30 47

Figure S4423.  Get High-res Image Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FRY MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S17433.  Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FRY MUTATED 1 1 2 0 2 1
FRY WILD-TYPE 12 15 12 11 9 8
'FRY MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S17434.  Gene #1727: 'FRY MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FRY MUTATED 1 0 0 2 1 0 3 0 0
FRY WILD-TYPE 10 7 7 7 7 7 8 9 5
'EIF2AK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S17435.  Gene #1728: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EIF2AK3 MUTATED 0 3 8
EIF2AK3 WILD-TYPE 42 170 139
'EIF2AK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S17436.  Gene #1728: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EIF2AK3 MUTATED 6 2 2
EIF2AK3 WILD-TYPE 56 71 73
'EIF2AK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.087 (Fisher's exact test), Q value = 0.32

Table S17437.  Gene #1728: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EIF2AK3 MUTATED 2 1 6
EIF2AK3 WILD-TYPE 68 119 94
'EIF2AK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.57

Table S17438.  Gene #1728: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EIF2AK3 MUTATED 1 1 0 0 0 4 2 1 0
EIF2AK3 WILD-TYPE 40 25 30 29 39 65 18 13 22
'EIF2AK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 0.23

Table S17439.  Gene #1728: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EIF2AK3 MUTATED 1 2 6 2
EIF2AK3 WILD-TYPE 99 70 66 119

Figure S4424.  Get High-res Image Gene #1728: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EIF2AK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S17440.  Gene #1728: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EIF2AK3 MUTATED 4 0 5 1 1
EIF2AK3 WILD-TYPE 55 75 69 118 37

Figure S4425.  Get High-res Image Gene #1728: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EIF2AK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.57

Table S17441.  Gene #1728: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EIF2AK3 MUTATED 2 4 3 0 2
EIF2AK3 WILD-TYPE 49 72 58 71 93
'EIF2AK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.88

Table S17442.  Gene #1728: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EIF2AK3 MUTATED 2 4 0 1 2 0 0 1 1
EIF2AK3 WILD-TYPE 67 44 39 15 51 20 21 37 49
'EIF2AK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.058 (Fisher's exact test), Q value = 0.26

Table S17443.  Gene #1728: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EIF2AK3 MUTATED 0 0 3 0 1 0
EIF2AK3 WILD-TYPE 13 16 11 11 10 9
'EIF2AK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S17444.  Gene #1728: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EIF2AK3 MUTATED 0 0 0 0 2 1 1 0 0
EIF2AK3 WILD-TYPE 11 7 7 9 6 6 10 9 5
'IFI35 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17445.  Gene #1729: 'IFI35 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IFI35 MUTATED 1 0 1 1 0
IFI35 WILD-TYPE 31 18 45 26 23
'IFI35 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S17446.  Gene #1729: 'IFI35 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IFI35 MUTATED 2 1 0
IFI35 WILD-TYPE 41 66 36
'IFI35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S17447.  Gene #1729: 'IFI35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IFI35 MUTATED 0 4 4
IFI35 WILD-TYPE 42 169 143
'IFI35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S17448.  Gene #1729: 'IFI35 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IFI35 MUTATED 0 4 2
IFI35 WILD-TYPE 62 69 73
'IFI35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17449.  Gene #1729: 'IFI35 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IFI35 MUTATED 2 3 3
IFI35 WILD-TYPE 68 117 97
'IFI35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.88

Table S17450.  Gene #1729: 'IFI35 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IFI35 MUTATED 1 0 0 1 1 2 0 1 2
IFI35 WILD-TYPE 40 26 30 28 38 67 20 13 20
'IFI35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.66

Table S17451.  Gene #1729: 'IFI35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IFI35 MUTATED 4 2 0 2
IFI35 WILD-TYPE 96 70 72 119
'IFI35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S17452.  Gene #1729: 'IFI35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IFI35 MUTATED 0 3 2 1 2
IFI35 WILD-TYPE 59 72 72 118 36
'IFI35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S17453.  Gene #1729: 'IFI35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IFI35 MUTATED 3 2 0 0 2
IFI35 WILD-TYPE 48 74 61 71 93
'IFI35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S17454.  Gene #1729: 'IFI35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IFI35 MUTATED 1 1 1 0 2 1 0 1 0
IFI35 WILD-TYPE 68 47 38 16 51 19 21 37 50
'MYPN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S17455.  Gene #1730: 'MYPN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MYPN MUTATED 4 0 1 2 2
MYPN WILD-TYPE 28 18 45 25 21
'MYPN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.92

Table S17456.  Gene #1730: 'MYPN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MYPN MUTATED 4 3 2
MYPN WILD-TYPE 39 64 34
'MYPN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.15

Table S17457.  Gene #1730: 'MYPN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MYPN MUTATED 1 4 13
MYPN WILD-TYPE 41 169 134

Figure S4426.  Get High-res Image Gene #1730: 'MYPN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MYPN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.73

Table S17458.  Gene #1730: 'MYPN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MYPN MUTATED 5 2 3
MYPN WILD-TYPE 57 71 72
'MYPN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S17459.  Gene #1730: 'MYPN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MYPN MUTATED 2 5 8
MYPN WILD-TYPE 68 115 92
'MYPN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S17460.  Gene #1730: 'MYPN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MYPN MUTATED 1 0 2 0 3 5 1 3 0
MYPN WILD-TYPE 40 26 28 29 36 64 19 11 22
'MYPN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S17461.  Gene #1730: 'MYPN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MYPN MUTATED 5 5 3 6
MYPN WILD-TYPE 95 67 69 115
'MYPN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S17462.  Gene #1730: 'MYPN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MYPN MUTATED 2 2 6 6 3
MYPN WILD-TYPE 57 73 68 113 35
'MYPN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.75

Table S17463.  Gene #1730: 'MYPN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MYPN MUTATED 0 4 3 5 5
MYPN WILD-TYPE 51 72 58 66 90
'MYPN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 0.88

Table S17464.  Gene #1730: 'MYPN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MYPN MUTATED 4 2 1 2 2 0 2 3 1
MYPN WILD-TYPE 65 46 38 14 51 20 19 35 49
'MYPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.6

Table S17465.  Gene #1730: 'MYPN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MYPN MUTATED 0 0 1 1 2 0
MYPN WILD-TYPE 13 16 13 10 9 9
'MYPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S17466.  Gene #1730: 'MYPN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MYPN MUTATED 0 0 0 1 1 1 0 1 0
MYPN WILD-TYPE 11 7 7 8 7 6 11 8 5
'DTD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.96

Table S17467.  Gene #1731: 'DTD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DTD1 MUTATED 1 2 2
DTD1 WILD-TYPE 41 171 145
'DTD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S17468.  Gene #1731: 'DTD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DTD1 MUTATED 1 0 3
DTD1 WILD-TYPE 61 73 72
'DTD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S17469.  Gene #1731: 'DTD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DTD1 MUTATED 0 3 1
DTD1 WILD-TYPE 70 117 99
'DTD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.62

Table S17470.  Gene #1731: 'DTD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DTD1 MUTATED 1 1 1 0 0 0 1 0 0
DTD1 WILD-TYPE 40 25 29 29 39 69 19 14 22
'DTD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0446 (Fisher's exact test), Q value = 0.22

Table S17471.  Gene #1731: 'DTD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DTD1 MUTATED 2 3 0 0
DTD1 WILD-TYPE 98 69 72 121

Figure S4427.  Get High-res Image Gene #1731: 'DTD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DTD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.68

Table S17472.  Gene #1731: 'DTD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DTD1 MUTATED 0 1 3 1 0
DTD1 WILD-TYPE 59 74 71 118 38
'DTD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S17473.  Gene #1731: 'DTD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DTD1 MUTATED 1 3 0 1 0
DTD1 WILD-TYPE 50 73 61 70 95
'DTD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.61

Table S17474.  Gene #1731: 'DTD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DTD1 MUTATED 2 0 0 1 1 0 1 0 0
DTD1 WILD-TYPE 67 48 39 15 52 20 20 38 50
'DTD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S17475.  Gene #1731: 'DTD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DTD1 MUTATED 1 1 0 0 1 0
DTD1 WILD-TYPE 12 15 14 11 10 9
'DTD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S17476.  Gene #1731: 'DTD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DTD1 MUTATED 1 0 0 1 0 0 0 1 0
DTD1 WILD-TYPE 10 7 7 8 8 7 11 8 5
'MGAT5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 0.25

Table S17477.  Gene #1732: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MGAT5 MUTATED 1 0 0 3 0
MGAT5 WILD-TYPE 31 18 46 24 23
'MGAT5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.89

Table S17478.  Gene #1732: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MGAT5 MUTATED 2 2 0
MGAT5 WILD-TYPE 41 65 36
'MGAT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.66

Table S17479.  Gene #1732: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MGAT5 MUTATED 0 5 7
MGAT5 WILD-TYPE 42 168 140
'MGAT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S17480.  Gene #1732: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MGAT5 MUTATED 5 1 3
MGAT5 WILD-TYPE 57 72 72
'MGAT5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.73

Table S17481.  Gene #1732: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MGAT5 MUTATED 1 7 4
MGAT5 WILD-TYPE 69 113 96
'MGAT5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.68

Table S17482.  Gene #1732: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MGAT5 MUTATED 2 0 1 2 3 1 2 1 0
MGAT5 WILD-TYPE 39 26 29 27 36 68 18 13 22
'MGAT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.77

Table S17483.  Gene #1732: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MGAT5 MUTATED 2 4 4 3
MGAT5 WILD-TYPE 98 68 68 118
'MGAT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S17484.  Gene #1732: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MGAT5 MUTATED 4 1 4 2 2
MGAT5 WILD-TYPE 55 74 70 117 36
'MGAT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 0.99

Table S17485.  Gene #1732: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MGAT5 MUTATED 1 4 3 1 4
MGAT5 WILD-TYPE 50 72 58 70 91
'MGAT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 0.31

Table S17486.  Gene #1732: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MGAT5 MUTATED 2 3 2 2 0 1 0 3 0
MGAT5 WILD-TYPE 67 45 37 14 53 19 21 35 50
'MGAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S17487.  Gene #1732: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MGAT5 MUTATED 0 1 1 0 1 1
MGAT5 WILD-TYPE 13 15 13 11 10 8
'MGAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S17488.  Gene #1732: 'MGAT5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MGAT5 MUTATED 3 0 0 1 0 0 0 0 0
MGAT5 WILD-TYPE 8 7 7 8 8 7 11 9 5
'GLUD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0977 (Fisher's exact test), Q value = 0.34

Table S17489.  Gene #1733: 'GLUD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GLUD2 MUTATED 1 0 0 3 1
GLUD2 WILD-TYPE 31 18 46 24 22
'GLUD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S17490.  Gene #1733: 'GLUD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GLUD2 MUTATED 3 1 1
GLUD2 WILD-TYPE 40 66 35
'GLUD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00296 (Fisher's exact test), Q value = 0.047

Table S17491.  Gene #1733: 'GLUD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GLUD2 MUTATED 2 3 15
GLUD2 WILD-TYPE 40 170 132

Figure S4428.  Get High-res Image Gene #1733: 'GLUD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GLUD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S17492.  Gene #1733: 'GLUD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GLUD2 MUTATED 4 3 9
GLUD2 WILD-TYPE 58 70 66
'GLUD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.85

Table S17493.  Gene #1733: 'GLUD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GLUD2 MUTATED 2 6 7
GLUD2 WILD-TYPE 68 114 93
'GLUD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 0.96

Table S17494.  Gene #1733: 'GLUD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GLUD2 MUTATED 3 1 0 2 2 6 0 1 0
GLUD2 WILD-TYPE 38 25 30 27 37 63 20 13 22
'GLUD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0197 (Fisher's exact test), Q value = 0.14

Table S17495.  Gene #1733: 'GLUD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GLUD2 MUTATED 2 9 4 4
GLUD2 WILD-TYPE 98 63 68 117

Figure S4429.  Get High-res Image Gene #1733: 'GLUD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GLUD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00695 (Fisher's exact test), Q value = 0.078

Table S17496.  Gene #1733: 'GLUD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GLUD2 MUTATED 3 3 9 1 3
GLUD2 WILD-TYPE 56 72 65 118 35

Figure S4430.  Get High-res Image Gene #1733: 'GLUD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GLUD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0896 (Fisher's exact test), Q value = 0.32

Table S17497.  Gene #1733: 'GLUD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GLUD2 MUTATED 2 8 5 1 3
GLUD2 WILD-TYPE 49 68 56 70 92
'GLUD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0211 (Fisher's exact test), Q value = 0.15

Table S17498.  Gene #1733: 'GLUD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GLUD2 MUTATED 5 5 0 3 0 1 2 2 1
GLUD2 WILD-TYPE 64 43 39 13 53 19 19 36 49

Figure S4431.  Get High-res Image Gene #1733: 'GLUD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GLUD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 0.34

Table S17499.  Gene #1733: 'GLUD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GLUD2 MUTATED 0 0 0 2 1 0
GLUD2 WILD-TYPE 13 16 14 9 10 9
'GLUD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0717 (Fisher's exact test), Q value = 0.29

Table S17500.  Gene #1733: 'GLUD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GLUD2 MUTATED 0 0 2 1 0 0 0 0 0
GLUD2 WILD-TYPE 11 7 5 8 8 7 11 9 5
'PTPRZ1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.4

Table S17501.  Gene #1734: 'PTPRZ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PTPRZ1 MUTATED 5 0 1 2 1
PTPRZ1 WILD-TYPE 27 18 45 25 22
'PTPRZ1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0532 (Fisher's exact test), Q value = 0.25

Table S17502.  Gene #1734: 'PTPRZ1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PTPRZ1 MUTATED 6 2 1
PTPRZ1 WILD-TYPE 37 65 35
'PTPRZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0336 (Fisher's exact test), Q value = 0.19

Table S17503.  Gene #1734: 'PTPRZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTPRZ1 MUTATED 1 9 18
PTPRZ1 WILD-TYPE 41 164 129

Figure S4432.  Get High-res Image Gene #1734: 'PTPRZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPRZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S17504.  Gene #1734: 'PTPRZ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTPRZ1 MUTATED 6 6 7
PTPRZ1 WILD-TYPE 56 67 68
'PTPRZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.84

Table S17505.  Gene #1734: 'PTPRZ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTPRZ1 MUTATED 3 10 9
PTPRZ1 WILD-TYPE 67 110 91
'PTPRZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 0.87

Table S17506.  Gene #1734: 'PTPRZ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTPRZ1 MUTATED 3 1 2 4 1 7 0 1 3
PTPRZ1 WILD-TYPE 38 25 28 25 38 62 20 13 19
'PTPRZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S17507.  Gene #1734: 'PTPRZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTPRZ1 MUTATED 5 5 8 10
PTPRZ1 WILD-TYPE 95 67 64 111
'PTPRZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.58

Table S17508.  Gene #1734: 'PTPRZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTPRZ1 MUTATED 5 5 8 5 5
PTPRZ1 WILD-TYPE 54 70 66 114 33
'PTPRZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.67

Table S17509.  Gene #1734: 'PTPRZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTPRZ1 MUTATED 1 9 4 6 7
PTPRZ1 WILD-TYPE 50 67 57 65 88
'PTPRZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S17510.  Gene #1734: 'PTPRZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTPRZ1 MUTATED 10 4 0 1 2 2 2 4 2
PTPRZ1 WILD-TYPE 59 44 39 15 51 18 19 34 48
'PTPRZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S17511.  Gene #1734: 'PTPRZ1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PTPRZ1 MUTATED 0 2 1 2 1 2
PTPRZ1 WILD-TYPE 13 14 13 9 10 7
'PTPRZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S17512.  Gene #1734: 'PTPRZ1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PTPRZ1 MUTATED 2 0 1 1 1 0 2 1 0
PTPRZ1 WILD-TYPE 9 7 6 8 7 7 9 8 5
'C3ORF27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S17513.  Gene #1735: 'C3ORF27 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C3ORF27 MUTATED 0 1 2
C3ORF27 WILD-TYPE 42 172 145
'C3ORF27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S17514.  Gene #1735: 'C3ORF27 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C3ORF27 MUTATED 0 2 1
C3ORF27 WILD-TYPE 70 118 99
'C3ORF27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.89

Table S17515.  Gene #1735: 'C3ORF27 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C3ORF27 MUTATED 0 0 1 0 0 1 0 0 1
C3ORF27 WILD-TYPE 41 26 29 29 39 68 20 14 21
'C3ORF27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S17516.  Gene #1735: 'C3ORF27 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C3ORF27 MUTATED 0 0 1 2
C3ORF27 WILD-TYPE 100 72 71 119
'C3ORF27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 0.96

Table S17517.  Gene #1735: 'C3ORF27 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C3ORF27 MUTATED 1 0 0 2 0
C3ORF27 WILD-TYPE 58 75 74 117 38
'C3ORF27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S17518.  Gene #1735: 'C3ORF27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C3ORF27 MUTATED 1 0 0 0 2
C3ORF27 WILD-TYPE 50 76 61 71 93
'C3ORF27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S17519.  Gene #1735: 'C3ORF27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C3ORF27 MUTATED 1 0 0 0 0 1 0 0 1
C3ORF27 WILD-TYPE 68 48 39 16 53 19 21 38 49
'CCT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S17520.  Gene #1736: 'CCT4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCT4 MUTATED 1 5 6
CCT4 WILD-TYPE 41 168 141
'CCT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S17521.  Gene #1736: 'CCT4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCT4 MUTATED 2 3 5
CCT4 WILD-TYPE 60 70 70
'CCT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S17522.  Gene #1736: 'CCT4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCT4 MUTATED 4 2 4
CCT4 WILD-TYPE 66 118 96
'CCT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S17523.  Gene #1736: 'CCT4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCT4 MUTATED 1 0 0 1 2 3 1 0 2
CCT4 WILD-TYPE 40 26 30 28 37 66 19 14 20
'CCT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S17524.  Gene #1736: 'CCT4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCT4 MUTATED 2 2 5 3
CCT4 WILD-TYPE 98 70 67 118
'CCT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 0.95

Table S17525.  Gene #1736: 'CCT4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCT4 MUTATED 2 4 3 2 1
CCT4 WILD-TYPE 57 71 71 117 37
'CCT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S17526.  Gene #1736: 'CCT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCT4 MUTATED 3 4 2 2 1
CCT4 WILD-TYPE 48 72 59 69 94
'CCT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S17527.  Gene #1736: 'CCT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCT4 MUTATED 2 3 1 0 4 0 0 1 1
CCT4 WILD-TYPE 67 45 38 16 49 20 21 37 49
'PON3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.52

Table S17528.  Gene #1737: 'PON3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PON3 MUTATED 0 3 7
PON3 WILD-TYPE 42 170 140
'PON3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S17529.  Gene #1737: 'PON3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PON3 MUTATED 4 1 3
PON3 WILD-TYPE 58 72 72
'PON3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S17530.  Gene #1737: 'PON3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PON3 MUTATED 1 3 6
PON3 WILD-TYPE 69 117 94
'PON3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.99

Table S17531.  Gene #1737: 'PON3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PON3 MUTATED 2 1 0 0 2 5 0 0 0
PON3 WILD-TYPE 39 25 30 29 37 64 20 14 22
'PON3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.85

Table S17532.  Gene #1737: 'PON3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PON3 MUTATED 2 1 4 3
PON3 WILD-TYPE 98 71 68 118
'PON3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.41

Table S17533.  Gene #1737: 'PON3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PON3 MUTATED 3 0 4 2 1
PON3 WILD-TYPE 56 75 70 117 37
'PON3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S17534.  Gene #1737: 'PON3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PON3 MUTATED 1 4 1 2 2
PON3 WILD-TYPE 50 72 60 69 93
'PON3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S17535.  Gene #1737: 'PON3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PON3 MUTATED 2 4 0 1 0 0 0 1 2
PON3 WILD-TYPE 67 44 39 15 53 20 21 37 48
'PON3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S17536.  Gene #1737: 'PON3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PON3 MUTATED 0 0 1 0 2 1
PON3 WILD-TYPE 13 16 13 11 9 8
'PON3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S17537.  Gene #1737: 'PON3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PON3 MUTATED 0 0 0 0 0 0 3 1 0
PON3 WILD-TYPE 11 7 7 9 8 7 8 8 5
'TGM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.097

Table S17538.  Gene #1738: 'TGM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TGM1 MUTATED 1 1 9
TGM1 WILD-TYPE 41 172 138

Figure S4433.  Get High-res Image Gene #1738: 'TGM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TGM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.69

Table S17539.  Gene #1738: 'TGM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TGM1 MUTATED 1 2 5
TGM1 WILD-TYPE 61 71 70
'TGM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S17540.  Gene #1738: 'TGM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TGM1 MUTATED 1 5 4
TGM1 WILD-TYPE 69 115 96
'TGM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17541.  Gene #1738: 'TGM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TGM1 MUTATED 1 1 1 1 1 3 1 0 1
TGM1 WILD-TYPE 40 25 29 28 38 66 19 14 21
'TGM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S17542.  Gene #1738: 'TGM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TGM1 MUTATED 1 5 2 3
TGM1 WILD-TYPE 99 67 70 118
'TGM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00257 (Fisher's exact test), Q value = 0.043

Table S17543.  Gene #1738: 'TGM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TGM1 MUTATED 1 1 6 0 3
TGM1 WILD-TYPE 58 74 68 119 35

Figure S4434.  Get High-res Image Gene #1738: 'TGM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TGM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 0.31

Table S17544.  Gene #1738: 'TGM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TGM1 MUTATED 1 6 1 0 3
TGM1 WILD-TYPE 50 70 60 71 92
'TGM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0955 (Fisher's exact test), Q value = 0.34

Table S17545.  Gene #1738: 'TGM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TGM1 MUTATED 1 2 0 2 2 1 0 3 0
TGM1 WILD-TYPE 68 46 39 14 51 19 21 35 50
'NEK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S17546.  Gene #1739: 'NEK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NEK3 MUTATED 2 0 0 2 0
NEK3 WILD-TYPE 30 18 46 25 23
'NEK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S17547.  Gene #1739: 'NEK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NEK3 MUTATED 2 1 1
NEK3 WILD-TYPE 41 66 35
'NEK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0872 (Fisher's exact test), Q value = 0.32

Table S17548.  Gene #1739: 'NEK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NEK3 MUTATED 2 2 7
NEK3 WILD-TYPE 40 171 140
'NEK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S17549.  Gene #1739: 'NEK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NEK3 MUTATED 2 3 2
NEK3 WILD-TYPE 60 70 73
'NEK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S17550.  Gene #1739: 'NEK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NEK3 MUTATED 0 3 5
NEK3 WILD-TYPE 70 117 95
'NEK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S17551.  Gene #1739: 'NEK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NEK3 MUTATED 0 0 1 1 0 6 0 0 0
NEK3 WILD-TYPE 41 26 29 28 39 63 20 14 22
'NEK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17552.  Gene #1739: 'NEK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NEK3 MUTATED 3 2 2 4
NEK3 WILD-TYPE 97 70 70 117
'NEK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S17553.  Gene #1739: 'NEK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NEK3 MUTATED 1 2 4 2 2
NEK3 WILD-TYPE 58 73 70 117 36
'NEK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S17554.  Gene #1739: 'NEK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NEK3 MUTATED 2 3 1 2 2
NEK3 WILD-TYPE 49 73 60 69 93
'NEK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S17555.  Gene #1739: 'NEK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NEK3 MUTATED 1 2 1 1 3 1 0 1 0
NEK3 WILD-TYPE 68 46 38 15 50 19 21 37 50
'GSTM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.65

Table S17556.  Gene #1740: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GSTM5 MUTATED 1 1 3
GSTM5 WILD-TYPE 41 172 144
'GSTM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S17557.  Gene #1740: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GSTM5 MUTATED 1 0 3
GSTM5 WILD-TYPE 61 73 72
'GSTM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17558.  Gene #1740: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GSTM5 MUTATED 1 2 2
GSTM5 WILD-TYPE 69 118 98
'GSTM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.91

Table S17559.  Gene #1740: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GSTM5 MUTATED 1 0 1 1 0 1 0 1 0
GSTM5 WILD-TYPE 40 26 29 28 39 68 20 13 22
'GSTM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S17560.  Gene #1740: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GSTM5 MUTATED 0 3 1 1
GSTM5 WILD-TYPE 100 69 71 120
'GSTM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.68

Table S17561.  Gene #1740: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GSTM5 MUTATED 0 1 3 1 0
GSTM5 WILD-TYPE 59 74 71 118 38
'GSTM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 0.31

Table S17562.  Gene #1740: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GSTM5 MUTATED 0 3 0 2 0
GSTM5 WILD-TYPE 51 73 61 69 95
'GSTM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.985 (Fisher's exact test), Q value = 1

Table S17563.  Gene #1740: 'GSTM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GSTM5 MUTATED 2 1 0 0 1 0 0 0 1
GSTM5 WILD-TYPE 67 47 39 16 52 20 21 38 49
'CLEC1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S17564.  Gene #1741: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CLEC1A MUTATED 0 1 7
CLEC1A WILD-TYPE 42 172 140

Figure S4435.  Get High-res Image Gene #1741: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CLEC1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S17565.  Gene #1741: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CLEC1A MUTATED 3 1 2
CLEC1A WILD-TYPE 59 72 73
'CLEC1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S17566.  Gene #1741: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CLEC1A MUTATED 0 2 4
CLEC1A WILD-TYPE 70 118 96
'CLEC1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S17567.  Gene #1741: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CLEC1A MUTATED 0 1 1 0 0 4 0 0 0
CLEC1A WILD-TYPE 41 25 29 29 39 65 20 14 22
'CLEC1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 0.99

Table S17568.  Gene #1741: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CLEC1A MUTATED 2 1 3 2
CLEC1A WILD-TYPE 98 71 69 119
'CLEC1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.88

Table S17569.  Gene #1741: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CLEC1A MUTATED 1 2 3 1 1
CLEC1A WILD-TYPE 58 73 71 118 37
'CLEC1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S17570.  Gene #1741: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CLEC1A MUTATED 1 3 1 1 2
CLEC1A WILD-TYPE 50 73 60 70 93
'CLEC1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S17571.  Gene #1741: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CLEC1A MUTATED 2 2 1 0 1 1 0 1 0
CLEC1A WILD-TYPE 67 46 38 16 52 19 21 37 50
'CLEC1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S17572.  Gene #1741: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CLEC1A MUTATED 1 0 1 0 1 0
CLEC1A WILD-TYPE 12 16 13 11 10 9
'CLEC1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S17573.  Gene #1741: 'CLEC1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CLEC1A MUTATED 0 0 0 0 0 0 2 1 0
CLEC1A WILD-TYPE 11 7 7 9 8 7 9 8 5
'CCDC64B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S17574.  Gene #1742: 'CCDC64B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCDC64B MUTATED 0 1 3
CCDC64B WILD-TYPE 42 172 144
'CCDC64B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17575.  Gene #1742: 'CCDC64B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCDC64B MUTATED 1 1 1
CCDC64B WILD-TYPE 61 72 74
'CCDC64B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S17576.  Gene #1742: 'CCDC64B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCDC64B MUTATED 1 0 3
CCDC64B WILD-TYPE 69 120 97
'CCDC64B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S17577.  Gene #1742: 'CCDC64B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCDC64B MUTATED 1 0 0 0 0 2 1 0 0
CCDC64B WILD-TYPE 40 26 30 29 39 67 19 14 22
'CCDC64B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.81

Table S17578.  Gene #1742: 'CCDC64B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCDC64B MUTATED 0 1 1 3
CCDC64B WILD-TYPE 100 71 71 118
'CCDC64B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0997 (Fisher's exact test), Q value = 0.34

Table S17579.  Gene #1742: 'CCDC64B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCDC64B MUTATED 0 0 2 1 2
CCDC64B WILD-TYPE 59 75 72 118 36
'CCDC64B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S17580.  Gene #1742: 'CCDC64B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCDC64B MUTATED 1 2 0 1 1
CCDC64B WILD-TYPE 50 74 61 70 94
'CCDC64B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0497 (Fisher's exact test), Q value = 0.24

Table S17581.  Gene #1742: 'CCDC64B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCDC64B MUTATED 0 1 0 1 0 0 1 2 0
CCDC64B WILD-TYPE 69 47 39 15 53 20 20 36 50

Figure S4436.  Get High-res Image Gene #1742: 'CCDC64B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TEK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.6

Table S17582.  Gene #1743: 'TEK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TEK MUTATED 4 0 2 2 0
TEK WILD-TYPE 28 18 44 25 23
'TEK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S17583.  Gene #1743: 'TEK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TEK MUTATED 4 3 1
TEK WILD-TYPE 39 64 35
'TEK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.096

Table S17584.  Gene #1743: 'TEK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TEK MUTATED 1 8 19
TEK WILD-TYPE 41 165 128

Figure S4437.  Get High-res Image Gene #1743: 'TEK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TEK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S17585.  Gene #1743: 'TEK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TEK MUTATED 8 4 8
TEK WILD-TYPE 54 69 67
'TEK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.69

Table S17586.  Gene #1743: 'TEK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TEK MUTATED 4 9 12
TEK WILD-TYPE 66 111 88
'TEK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0577 (Fisher's exact test), Q value = 0.26

Table S17587.  Gene #1743: 'TEK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TEK MUTATED 1 0 3 4 3 11 3 0 0
TEK WILD-TYPE 40 26 27 25 36 58 17 14 22
'TEK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.92

Table S17588.  Gene #1743: 'TEK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TEK MUTATED 6 6 8 8
TEK WILD-TYPE 94 66 64 113
'TEK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0385 (Fisher's exact test), Q value = 0.21

Table S17589.  Gene #1743: 'TEK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TEK MUTATED 2 8 10 4 4
TEK WILD-TYPE 57 67 64 115 34

Figure S4438.  Get High-res Image Gene #1743: 'TEK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TEK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00088 (Fisher's exact test), Q value = 0.023

Table S17590.  Gene #1743: 'TEK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TEK MUTATED 2 15 1 3 6
TEK WILD-TYPE 49 61 60 68 89

Figure S4439.  Get High-res Image Gene #1743: 'TEK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TEK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.35

Table S17591.  Gene #1743: 'TEK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TEK MUTATED 5 5 2 5 4 2 0 2 2
TEK WILD-TYPE 64 43 37 11 49 18 21 36 48
'TEK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.3

Table S17592.  Gene #1743: 'TEK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TEK MUTATED 1 3 0 1 4 0
TEK WILD-TYPE 12 13 14 10 7 9
'TEK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S17593.  Gene #1743: 'TEK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TEK MUTATED 1 1 0 2 1 0 4 0 0
TEK WILD-TYPE 10 6 7 7 7 7 7 9 5
'IL8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S17594.  Gene #1744: 'IL8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IL8 MUTATED 1 1 3
IL8 WILD-TYPE 41 172 144
'IL8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S17595.  Gene #1744: 'IL8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IL8 MUTATED 2 1 2
IL8 WILD-TYPE 60 72 73
'IL8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S17596.  Gene #1744: 'IL8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IL8 MUTATED 0 2 3
IL8 WILD-TYPE 70 118 97
'IL8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S17597.  Gene #1744: 'IL8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IL8 MUTATED 2 0 0 1 0 2 0 0 0
IL8 WILD-TYPE 39 26 30 28 39 67 20 14 22
'IL8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00328 (Fisher's exact test), Q value = 0.05

Table S17598.  Gene #1744: 'IL8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IL8 MUTATED 0 1 4 0
IL8 WILD-TYPE 100 71 68 121

Figure S4440.  Get High-res Image Gene #1744: 'IL8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'IL8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S17599.  Gene #1744: 'IL8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IL8 MUTATED 1 0 4 0 0
IL8 WILD-TYPE 58 75 70 119 38

Figure S4441.  Get High-res Image Gene #1744: 'IL8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IL8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 0.24

Table S17600.  Gene #1744: 'IL8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IL8 MUTATED 0 3 2 0 0
IL8 WILD-TYPE 51 73 59 71 95

Figure S4442.  Get High-res Image Gene #1744: 'IL8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IL8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S17601.  Gene #1744: 'IL8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IL8 MUTATED 1 3 0 1 0 0 0 0 0
IL8 WILD-TYPE 68 45 39 15 53 20 21 38 50
'IL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.52

Table S17602.  Gene #1744: 'IL8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
IL8 MUTATED 0 1 0 0 2 0
IL8 WILD-TYPE 13 15 14 11 9 9
'IL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S17603.  Gene #1744: 'IL8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
IL8 MUTATED 0 0 0 0 0 2 1 0 0
IL8 WILD-TYPE 11 7 7 9 8 5 10 9 5
'ADCY9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.97

Table S17604.  Gene #1745: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ADCY9 MUTATED 1 1 1 0 0
ADCY9 WILD-TYPE 31 17 45 27 23
'ADCY9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17605.  Gene #1745: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ADCY9 MUTATED 1 1 1
ADCY9 WILD-TYPE 42 66 35
'ADCY9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.15

Table S17606.  Gene #1745: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ADCY9 MUTATED 0 5 13
ADCY9 WILD-TYPE 42 168 134

Figure S4443.  Get High-res Image Gene #1745: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ADCY9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S17607.  Gene #1745: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ADCY9 MUTATED 5 3 6
ADCY9 WILD-TYPE 57 70 69
'ADCY9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S17608.  Gene #1745: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ADCY9 MUTATED 1 6 8
ADCY9 WILD-TYPE 69 114 92
'ADCY9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S17609.  Gene #1745: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ADCY9 MUTATED 1 1 1 1 2 7 1 1 0
ADCY9 WILD-TYPE 40 25 29 28 37 62 19 13 22
'ADCY9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.45

Table S17610.  Gene #1745: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ADCY9 MUTATED 4 7 4 3
ADCY9 WILD-TYPE 96 65 68 118
'ADCY9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0305 (Fisher's exact test), Q value = 0.18

Table S17611.  Gene #1745: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ADCY9 MUTATED 2 3 9 2 2
ADCY9 WILD-TYPE 57 72 65 117 36

Figure S4444.  Get High-res Image Gene #1745: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ADCY9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S17612.  Gene #1745: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ADCY9 MUTATED 1 9 2 3 3
ADCY9 WILD-TYPE 50 67 59 68 92
'ADCY9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0473 (Fisher's exact test), Q value = 0.23

Table S17613.  Gene #1745: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ADCY9 MUTATED 2 4 1 4 1 2 0 2 2
ADCY9 WILD-TYPE 67 44 38 12 52 18 21 36 48

Figure S4445.  Get High-res Image Gene #1745: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ADCY9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S17614.  Gene #1745: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ADCY9 MUTATED 1 0 0 0 2 1
ADCY9 WILD-TYPE 12 16 14 11 9 8
'ADCY9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.89

Table S17615.  Gene #1745: 'ADCY9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ADCY9 MUTATED 0 0 0 1 0 0 1 2 0
ADCY9 WILD-TYPE 11 7 7 8 8 7 10 7 5
'TNXB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.6

Table S17616.  Gene #1746: 'TNXB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TNXB MUTATED 3 1 1 4 1
TNXB WILD-TYPE 29 17 45 23 22
'TNXB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S17617.  Gene #1746: 'TNXB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TNXB MUTATED 4 4 2
TNXB WILD-TYPE 39 63 34
'TNXB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0093

Table S17618.  Gene #1746: 'TNXB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TNXB MUTATED 2 9 28
TNXB WILD-TYPE 40 164 119

Figure S4446.  Get High-res Image Gene #1746: 'TNXB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TNXB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S17619.  Gene #1746: 'TNXB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TNXB MUTATED 10 7 13
TNXB WILD-TYPE 52 66 62
'TNXB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.37

Table S17620.  Gene #1746: 'TNXB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TNXB MUTATED 6 9 16
TNXB WILD-TYPE 64 111 84
'TNXB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.67

Table S17621.  Gene #1746: 'TNXB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TNXB MUTATED 4 2 1 4 4 11 4 1 0
TNXB WILD-TYPE 37 24 29 25 35 58 16 13 22
'TNXB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S17622.  Gene #1746: 'TNXB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TNXB MUTATED 8 12 10 9
TNXB WILD-TYPE 92 60 62 112
'TNXB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0224 (Fisher's exact test), Q value = 0.15

Table S17623.  Gene #1746: 'TNXB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TNXB MUTATED 5 9 15 6 4
TNXB WILD-TYPE 54 66 59 113 34

Figure S4447.  Get High-res Image Gene #1746: 'TNXB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TNXB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.078 (Fisher's exact test), Q value = 0.3

Table S17624.  Gene #1746: 'TNXB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TNXB MUTATED 8 13 5 3 9
TNXB WILD-TYPE 43 63 56 68 86
'TNXB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0196 (Fisher's exact test), Q value = 0.14

Table S17625.  Gene #1746: 'TNXB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TNXB MUTATED 7 5 3 7 5 4 2 3 2
TNXB WILD-TYPE 62 43 36 9 48 16 19 35 48

Figure S4448.  Get High-res Image Gene #1746: 'TNXB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TNXB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.52

Table S17626.  Gene #1746: 'TNXB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TNXB MUTATED 1 1 2 1 4 0
TNXB WILD-TYPE 12 15 12 10 7 9
'TNXB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.6

Table S17627.  Gene #1746: 'TNXB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TNXB MUTATED 0 1 0 2 1 3 1 1 0
TNXB WILD-TYPE 11 6 7 7 7 4 10 8 5
'MOGAT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.19

Table S17628.  Gene #1747: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MOGAT3 MUTATED 1 0 5
MOGAT3 WILD-TYPE 41 173 142

Figure S4449.  Get High-res Image Gene #1747: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MOGAT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S17629.  Gene #1747: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MOGAT3 MUTATED 1 1 3
MOGAT3 WILD-TYPE 61 72 72
'MOGAT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S17630.  Gene #1747: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MOGAT3 MUTATED 1 2 3
MOGAT3 WILD-TYPE 69 118 97
'MOGAT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.89

Table S17631.  Gene #1747: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MOGAT3 MUTATED 0 1 0 1 0 2 1 0 1
MOGAT3 WILD-TYPE 41 25 30 28 39 67 19 14 21
'MOGAT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S17632.  Gene #1747: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MOGAT3 MUTATED 0 3 1 2
MOGAT3 WILD-TYPE 100 69 71 119
'MOGAT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.57

Table S17633.  Gene #1747: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MOGAT3 MUTATED 1 0 3 1 1
MOGAT3 WILD-TYPE 58 75 71 118 37
'MOGAT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.63

Table S17634.  Gene #1747: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MOGAT3 MUTATED 0 3 1 0 1
MOGAT3 WILD-TYPE 51 73 60 71 94
'MOGAT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0671 (Fisher's exact test), Q value = 0.28

Table S17635.  Gene #1747: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MOGAT3 MUTATED 2 0 0 2 0 0 0 0 1
MOGAT3 WILD-TYPE 67 48 39 14 53 20 21 38 49
'HIST1H3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S17636.  Gene #1748: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HIST1H3B MUTATED 0 1 3
HIST1H3B WILD-TYPE 42 172 144
'HIST1H3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S17637.  Gene #1748: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HIST1H3B MUTATED 0 1 2
HIST1H3B WILD-TYPE 62 72 73
'HIST1H3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.87

Table S17638.  Gene #1748: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HIST1H3B MUTATED 2 1 1
HIST1H3B WILD-TYPE 68 119 99
'HIST1H3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S17639.  Gene #1748: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HIST1H3B MUTATED 1 0 0 0 1 1 0 0 1
HIST1H3B WILD-TYPE 40 26 30 29 38 68 20 14 21
'HIST1H3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17640.  Gene #1748: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HIST1H3B MUTATED 1 1 1 1
HIST1H3B WILD-TYPE 99 71 71 120
'HIST1H3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S17641.  Gene #1748: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HIST1H3B MUTATED 0 1 2 0 1
HIST1H3B WILD-TYPE 59 74 72 119 37
'HIST1H3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.98

Table S17642.  Gene #1748: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HIST1H3B MUTATED 1 1 0 0 2
HIST1H3B WILD-TYPE 50 75 61 71 93
'HIST1H3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0959 (Fisher's exact test), Q value = 0.34

Table S17643.  Gene #1748: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HIST1H3B MUTATED 0 1 0 0 0 1 0 2 0
HIST1H3B WILD-TYPE 69 47 39 16 53 19 21 36 50
'ERCC6L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.55

Table S17644.  Gene #1749: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ERCC6L MUTATED 3 1 1 0 0
ERCC6L WILD-TYPE 29 17 45 27 23
'ERCC6L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0508 (Fisher's exact test), Q value = 0.24

Table S17645.  Gene #1749: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ERCC6L MUTATED 3 0 2
ERCC6L WILD-TYPE 40 67 34
'ERCC6L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.12

Table S17646.  Gene #1749: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ERCC6L MUTATED 0 2 10
ERCC6L WILD-TYPE 42 171 137

Figure S4450.  Get High-res Image Gene #1749: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ERCC6L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.73

Table S17647.  Gene #1749: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ERCC6L MUTATED 2 1 4
ERCC6L WILD-TYPE 60 72 71
'ERCC6L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.91

Table S17648.  Gene #1749: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ERCC6L MUTATED 2 2 4
ERCC6L WILD-TYPE 68 118 96
'ERCC6L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S17649.  Gene #1749: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ERCC6L MUTATED 0 1 0 1 1 3 1 1 0
ERCC6L WILD-TYPE 41 25 30 28 38 66 19 13 22
'ERCC6L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S17650.  Gene #1749: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ERCC6L MUTATED 1 4 2 5
ERCC6L WILD-TYPE 99 68 70 116
'ERCC6L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0649 (Fisher's exact test), Q value = 0.27

Table S17651.  Gene #1749: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ERCC6L MUTATED 0 1 6 3 2
ERCC6L WILD-TYPE 59 74 68 116 36
'ERCC6L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S17652.  Gene #1749: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ERCC6L MUTATED 1 4 2 2 3
ERCC6L WILD-TYPE 50 72 59 69 92
'ERCC6L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S17653.  Gene #1749: 'ERCC6L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ERCC6L MUTATED 3 2 0 1 1 1 0 3 1
ERCC6L WILD-TYPE 66 46 39 15 52 19 21 35 49
'SBF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00541 (Fisher's exact test), Q value = 0.069

Table S17654.  Gene #1750: 'SBF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SBF1 MUTATED 2 1 10
SBF1 WILD-TYPE 40 172 137

Figure S4451.  Get High-res Image Gene #1750: 'SBF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SBF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.16

Table S17655.  Gene #1750: 'SBF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SBF1 MUTATED 5 0 6
SBF1 WILD-TYPE 57 73 69

Figure S4452.  Get High-res Image Gene #1750: 'SBF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SBF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17656.  Gene #1750: 'SBF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SBF1 MUTATED 2 5 4
SBF1 WILD-TYPE 68 115 96
'SBF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S17657.  Gene #1750: 'SBF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SBF1 MUTATED 0 1 0 3 2 4 1 0 0
SBF1 WILD-TYPE 41 25 30 26 37 65 19 14 22
'SBF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.6

Table S17658.  Gene #1750: 'SBF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SBF1 MUTATED 2 5 4 3
SBF1 WILD-TYPE 98 67 68 118
'SBF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0057

Table S17659.  Gene #1750: 'SBF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SBF1 MUTATED 0 1 10 1 2
SBF1 WILD-TYPE 59 74 64 118 36

Figure S4453.  Get High-res Image Gene #1750: 'SBF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SBF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S17660.  Gene #1750: 'SBF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SBF1 MUTATED 1 5 3 1 4
SBF1 WILD-TYPE 50 71 58 70 91
'SBF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0636 (Fisher's exact test), Q value = 0.27

Table S17661.  Gene #1750: 'SBF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SBF1 MUTATED 1 3 0 3 4 0 1 1 1
SBF1 WILD-TYPE 68 45 39 13 49 20 20 37 49
'SBF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S17662.  Gene #1750: 'SBF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SBF1 MUTATED 0 0 1 0 2 0
SBF1 WILD-TYPE 13 16 13 11 9 9
'SBF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S17663.  Gene #1750: 'SBF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SBF1 MUTATED 0 0 0 2 1 0 0 0 0
SBF1 WILD-TYPE 11 7 7 7 7 7 11 9 5
'ZNF391 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0529 (Fisher's exact test), Q value = 0.25

Table S17664.  Gene #1751: 'ZNF391 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF391 MUTATED 3 0 0 0 0
ZNF391 WILD-TYPE 29 18 46 27 23
'ZNF391 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S17665.  Gene #1751: 'ZNF391 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF391 MUTATED 2 0 1
ZNF391 WILD-TYPE 41 67 35
'ZNF391 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S17666.  Gene #1751: 'ZNF391 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF391 MUTATED 1 2 5
ZNF391 WILD-TYPE 41 171 142
'ZNF391 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S17667.  Gene #1751: 'ZNF391 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF391 MUTATED 2 1 2
ZNF391 WILD-TYPE 60 72 73
'ZNF391 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S17668.  Gene #1751: 'ZNF391 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF391 MUTATED 1 1 3
ZNF391 WILD-TYPE 69 119 97
'ZNF391 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.86

Table S17669.  Gene #1751: 'ZNF391 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF391 MUTATED 0 0 0 1 0 2 1 0 1
ZNF391 WILD-TYPE 41 26 30 28 39 67 19 14 21
'ZNF391 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17670.  Gene #1751: 'ZNF391 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF391 MUTATED 2 2 1 3
ZNF391 WILD-TYPE 98 70 71 118
'ZNF391 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.48

Table S17671.  Gene #1751: 'ZNF391 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF391 MUTATED 0 3 2 1 2
ZNF391 WILD-TYPE 59 72 72 118 36
'ZNF391 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.93

Table S17672.  Gene #1751: 'ZNF391 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF391 MUTATED 2 2 0 1 3
ZNF391 WILD-TYPE 49 74 61 70 92
'ZNF391 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.95

Table S17673.  Gene #1751: 'ZNF391 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF391 MUTATED 1 0 1 1 2 0 0 2 1
ZNF391 WILD-TYPE 68 48 38 15 51 20 21 36 49
'SORBS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 0.25

Table S17674.  Gene #1752: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SORBS1 MUTATED 4 0 0 1 1
SORBS1 WILD-TYPE 28 18 46 26 22
'SORBS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S17675.  Gene #1752: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SORBS1 MUTATED 4 1 1
SORBS1 WILD-TYPE 39 66 35
'SORBS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.16

Table S17676.  Gene #1752: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SORBS1 MUTATED 1 1 8
SORBS1 WILD-TYPE 41 172 139

Figure S4454.  Get High-res Image Gene #1752: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SORBS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17677.  Gene #1752: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SORBS1 MUTATED 1 1 2
SORBS1 WILD-TYPE 61 72 73
'SORBS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S17678.  Gene #1752: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SORBS1 MUTATED 1 5 2
SORBS1 WILD-TYPE 69 115 98
'SORBS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S17679.  Gene #1752: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SORBS1 MUTATED 1 1 1 1 2 1 1 0 0
SORBS1 WILD-TYPE 40 25 29 28 37 68 19 14 22
'SORBS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S17680.  Gene #1752: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SORBS1 MUTATED 1 3 0 6
SORBS1 WILD-TYPE 99 69 72 115
'SORBS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0541 (Fisher's exact test), Q value = 0.25

Table S17681.  Gene #1752: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SORBS1 MUTATED 0 2 2 2 4
SORBS1 WILD-TYPE 59 73 72 117 34
'SORBS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S17682.  Gene #1752: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SORBS1 MUTATED 1 2 0 1 6
SORBS1 WILD-TYPE 50 74 61 70 89
'SORBS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 0.23

Table S17683.  Gene #1752: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SORBS1 MUTATED 0 0 1 1 1 1 0 4 2
SORBS1 WILD-TYPE 69 48 38 15 52 19 21 34 48

Figure S4455.  Get High-res Image Gene #1752: 'SORBS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MOGAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S17684.  Gene #1753: 'MOGAT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MOGAT1 MUTATED 0 1 3
MOGAT1 WILD-TYPE 42 172 144
'MOGAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S17685.  Gene #1753: 'MOGAT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MOGAT1 MUTATED 2 1 0
MOGAT1 WILD-TYPE 60 72 75
'MOGAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0537 (Fisher's exact test), Q value = 0.25

Table S17686.  Gene #1753: 'MOGAT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MOGAT1 MUTATED 0 0 3
MOGAT1 WILD-TYPE 70 120 97
'MOGAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.94

Table S17687.  Gene #1753: 'MOGAT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MOGAT1 MUTATED 0 0 0 0 0 2 0 0 1
MOGAT1 WILD-TYPE 41 26 30 29 39 67 20 14 21
'MOGAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.28

Table S17688.  Gene #1753: 'MOGAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MOGAT1 MUTATED 0 0 3 1
MOGAT1 WILD-TYPE 100 72 69 120
'MOGAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0794 (Fisher's exact test), Q value = 0.31

Table S17689.  Gene #1753: 'MOGAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MOGAT1 MUTATED 2 0 1 0 1
MOGAT1 WILD-TYPE 57 75 73 119 37
'MOGAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S17690.  Gene #1753: 'MOGAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MOGAT1 MUTATED 1 1 1 0 1
MOGAT1 WILD-TYPE 50 75 60 71 94
'MOGAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S17691.  Gene #1753: 'MOGAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MOGAT1 MUTATED 0 2 1 0 0 0 1 0 0
MOGAT1 WILD-TYPE 69 46 38 16 53 20 20 38 50
'MOGAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S17692.  Gene #1753: 'MOGAT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MOGAT1 MUTATED 0 1 0 1 1 0
MOGAT1 WILD-TYPE 13 15 14 10 10 9
'MOGAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S17693.  Gene #1753: 'MOGAT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MOGAT1 MUTATED 0 1 0 0 0 0 1 1 0
MOGAT1 WILD-TYPE 11 6 7 9 8 7 10 8 5
'GAB3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.78

Table S17694.  Gene #1754: 'GAB3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GAB3 MUTATED 3 1 1 1 0
GAB3 WILD-TYPE 29 17 45 26 23
'GAB3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.88

Table S17695.  Gene #1754: 'GAB3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GAB3 MUTATED 3 2 1
GAB3 WILD-TYPE 40 65 35
'GAB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00338 (Fisher's exact test), Q value = 0.051

Table S17696.  Gene #1754: 'GAB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GAB3 MUTATED 0 1 10
GAB3 WILD-TYPE 42 172 137

Figure S4456.  Get High-res Image Gene #1754: 'GAB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GAB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.78

Table S17697.  Gene #1754: 'GAB3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GAB3 MUTATED 3 1 1
GAB3 WILD-TYPE 59 72 74
'GAB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S17698.  Gene #1754: 'GAB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GAB3 MUTATED 2 3 4
GAB3 WILD-TYPE 68 117 96
'GAB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S17699.  Gene #1754: 'GAB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GAB3 MUTATED 2 1 1 0 0 4 1 0 0
GAB3 WILD-TYPE 39 25 29 29 39 65 19 14 22
'GAB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S17700.  Gene #1754: 'GAB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GAB3 MUTATED 2 1 2 6
GAB3 WILD-TYPE 98 71 70 115
'GAB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.96

Table S17701.  Gene #1754: 'GAB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GAB3 MUTATED 1 1 2 5 2
GAB3 WILD-TYPE 58 74 72 114 36
'GAB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S17702.  Gene #1754: 'GAB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GAB3 MUTATED 0 2 2 2 3
GAB3 WILD-TYPE 51 74 59 69 92
'GAB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.67

Table S17703.  Gene #1754: 'GAB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GAB3 MUTATED 0 2 1 1 2 1 1 0 1
GAB3 WILD-TYPE 69 46 38 15 51 19 20 38 49
'GAB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S17704.  Gene #1754: 'GAB3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GAB3 MUTATED 1 1 0 0 1 0
GAB3 WILD-TYPE 12 15 14 11 10 9
'GAB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S17705.  Gene #1754: 'GAB3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GAB3 MUTATED 0 0 0 1 0 1 1 0 0
GAB3 WILD-TYPE 11 7 7 8 8 6 10 9 5
'SIGLEC14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0867 (Fisher's exact test), Q value = 0.32

Table S17706.  Gene #1755: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SIGLEC14 MUTATED 1 1 6
SIGLEC14 WILD-TYPE 41 172 141
'SIGLEC14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S17707.  Gene #1755: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SIGLEC14 MUTATED 3 1 2
SIGLEC14 WILD-TYPE 59 72 73
'SIGLEC14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.5

Table S17708.  Gene #1755: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SIGLEC14 MUTATED 0 2 4
SIGLEC14 WILD-TYPE 70 118 96
'SIGLEC14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S17709.  Gene #1755: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SIGLEC14 MUTATED 0 1 0 1 0 4 0 0 0
SIGLEC14 WILD-TYPE 41 25 30 28 39 65 20 14 22
'SIGLEC14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S17710.  Gene #1755: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SIGLEC14 MUTATED 1 2 2 3
SIGLEC14 WILD-TYPE 99 70 70 118
'SIGLEC14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S17711.  Gene #1755: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SIGLEC14 MUTATED 0 1 4 2 1
SIGLEC14 WILD-TYPE 59 74 70 117 37
'SIGLEC14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S17712.  Gene #1755: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SIGLEC14 MUTATED 1 4 0 2 1
SIGLEC14 WILD-TYPE 50 72 61 69 94
'SIGLEC14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S17713.  Gene #1755: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SIGLEC14 MUTATED 0 2 1 2 2 0 0 1 0
SIGLEC14 WILD-TYPE 69 46 38 14 51 20 21 37 50
'SIGLEC14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S17714.  Gene #1755: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SIGLEC14 MUTATED 1 0 0 0 2 0
SIGLEC14 WILD-TYPE 12 16 14 11 9 9
'SIGLEC14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S17715.  Gene #1755: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SIGLEC14 MUTATED 0 0 0 1 0 0 1 1 0
SIGLEC14 WILD-TYPE 11 7 7 8 8 7 10 8 5
'GBA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00896 (Fisher's exact test), Q value = 0.089

Table S17716.  Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GBA2 MUTATED 4 0 0 0 0
GBA2 WILD-TYPE 28 18 46 27 23

Figure S4457.  Get High-res Image Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GBA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.01 (Fisher's exact test), Q value = 0.094

Table S17717.  Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GBA2 MUTATED 4 0 0
GBA2 WILD-TYPE 39 67 36

Figure S4458.  Get High-res Image Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GBA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 0.035

Table S17718.  Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GBA2 MUTATED 2 1 12
GBA2 WILD-TYPE 40 172 135

Figure S4459.  Get High-res Image Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GBA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S17719.  Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GBA2 MUTATED 3 0 7
GBA2 WILD-TYPE 59 73 68

Figure S4460.  Get High-res Image Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GBA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S17720.  Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GBA2 MUTATED 2 5 5
GBA2 WILD-TYPE 68 115 95
'GBA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.92

Table S17721.  Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GBA2 MUTATED 1 0 0 2 2 5 1 1 0
GBA2 WILD-TYPE 40 26 30 27 37 64 19 13 22
'GBA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.2

Table S17722.  Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GBA2 MUTATED 1 7 2 4
GBA2 WILD-TYPE 99 65 70 117

Figure S4461.  Get High-res Image Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GBA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0039

Table S17723.  Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GBA2 MUTATED 1 1 8 0 4
GBA2 WILD-TYPE 58 74 66 119 34

Figure S4462.  Get High-res Image Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GBA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.098

Table S17724.  Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GBA2 MUTATED 0 9 2 1 3
GBA2 WILD-TYPE 51 67 59 70 92

Figure S4463.  Get High-res Image Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GBA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S17725.  Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GBA2 MUTATED 2 2 2 2 2 1 1 3 0
GBA2 WILD-TYPE 67 46 37 14 51 19 20 35 50
'GBA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S17726.  Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GBA2 MUTATED 1 0 0 1 1 0
GBA2 WILD-TYPE 12 16 14 10 10 9
'GBA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S17727.  Gene #1756: 'GBA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GBA2 MUTATED 0 0 0 1 0 0 2 0 0
GBA2 WILD-TYPE 11 7 7 8 8 7 9 9 5
'RTTN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S17728.  Gene #1757: 'RTTN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RTTN MUTATED 2 0 0 1 0
RTTN WILD-TYPE 30 18 46 26 23
'RTTN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S17729.  Gene #1757: 'RTTN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RTTN MUTATED 2 1 0
RTTN WILD-TYPE 41 66 36
'RTTN MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S17730.  Gene #1757: 'RTTN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RTTN MUTATED 0 1 16
RTTN WILD-TYPE 42 172 131

Figure S4464.  Get High-res Image Gene #1757: 'RTTN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RTTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.098

Table S17731.  Gene #1757: 'RTTN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RTTN MUTATED 6 0 7
RTTN WILD-TYPE 56 73 68

Figure S4465.  Get High-res Image Gene #1757: 'RTTN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RTTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S17732.  Gene #1757: 'RTTN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RTTN MUTATED 3 6 6
RTTN WILD-TYPE 67 114 94
'RTTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S17733.  Gene #1757: 'RTTN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RTTN MUTATED 2 3 1 2 1 5 1 0 0
RTTN WILD-TYPE 39 23 29 27 38 64 19 14 22
'RTTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.2

Table S17734.  Gene #1757: 'RTTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RTTN MUTATED 1 6 6 4
RTTN WILD-TYPE 99 66 66 117

Figure S4466.  Get High-res Image Gene #1757: 'RTTN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RTTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0454 (Fisher's exact test), Q value = 0.23

Table S17735.  Gene #1757: 'RTTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RTTN MUTATED 2 2 9 3 1
RTTN WILD-TYPE 57 73 65 116 37

Figure S4467.  Get High-res Image Gene #1757: 'RTTN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RTTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.54

Table S17736.  Gene #1757: 'RTTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RTTN MUTATED 1 6 2 1 7
RTTN WILD-TYPE 50 70 59 70 88
'RTTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 0.93

Table S17737.  Gene #1757: 'RTTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RTTN MUTATED 3 4 1 0 2 1 3 1 2
RTTN WILD-TYPE 66 44 38 16 51 19 18 37 48
'RTTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S17738.  Gene #1757: 'RTTN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RTTN MUTATED 0 0 1 0 2 0
RTTN WILD-TYPE 13 16 13 11 9 9
'RTTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S17739.  Gene #1757: 'RTTN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RTTN MUTATED 0 0 0 0 1 0 2 0 0
RTTN WILD-TYPE 11 7 7 9 7 7 9 9 5
'SFRS12IP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S17740.  Gene #1758: 'SFRS12IP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SFRS12IP1 MUTATED 0 0 3
SFRS12IP1 WILD-TYPE 42 173 144
'SFRS12IP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.5

Table S17741.  Gene #1758: 'SFRS12IP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SFRS12IP1 MUTATED 2 1 0
SFRS12IP1 WILD-TYPE 60 72 75
'SFRS12IP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S17742.  Gene #1758: 'SFRS12IP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SFRS12IP1 MUTATED 1 1 1 0
SFRS12IP1 WILD-TYPE 99 71 71 121
'SFRS12IP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.53

Table S17743.  Gene #1758: 'SFRS12IP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SFRS12IP1 MUTATED 0 1 2 0 0
SFRS12IP1 WILD-TYPE 59 74 72 119 38
'SFRS12IP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S17744.  Gene #1758: 'SFRS12IP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SFRS12IP1 MUTATED 1 2 0 0 0
SFRS12IP1 WILD-TYPE 50 74 61 71 95
'SFRS12IP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.5

Table S17745.  Gene #1758: 'SFRS12IP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SFRS12IP1 MUTATED 2 0 0 1 0 0 0 0 0
SFRS12IP1 WILD-TYPE 67 48 39 15 53 20 21 38 50
'TOMM70A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S17746.  Gene #1759: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TOMM70A MUTATED 2 0 0 1 0
TOMM70A WILD-TYPE 30 18 46 26 23
'TOMM70A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.79

Table S17747.  Gene #1759: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TOMM70A MUTATED 2 1 0
TOMM70A WILD-TYPE 41 66 36
'TOMM70A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.13

Table S17748.  Gene #1759: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TOMM70A MUTATED 0 1 8
TOMM70A WILD-TYPE 42 172 139

Figure S4468.  Get High-res Image Gene #1759: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TOMM70A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0783 (Fisher's exact test), Q value = 0.3

Table S17749.  Gene #1759: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TOMM70A MUTATED 4 0 2
TOMM70A WILD-TYPE 58 73 73
'TOMM70A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.61

Table S17750.  Gene #1759: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TOMM70A MUTATED 1 3 6
TOMM70A WILD-TYPE 69 117 94
'TOMM70A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S17751.  Gene #1759: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TOMM70A MUTATED 1 0 2 1 0 3 3 0 0
TOMM70A WILD-TYPE 40 26 28 28 39 66 17 14 22
'TOMM70A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S17752.  Gene #1759: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TOMM70A MUTATED 0 3 3 4
TOMM70A WILD-TYPE 100 69 69 117
'TOMM70A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0732 (Fisher's exact test), Q value = 0.29

Table S17753.  Gene #1759: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TOMM70A MUTATED 1 1 4 1 3
TOMM70A WILD-TYPE 58 74 70 118 35
'TOMM70A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.79

Table S17754.  Gene #1759: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TOMM70A MUTATED 1 2 0 2 5
TOMM70A WILD-TYPE 50 74 61 69 90
'TOMM70A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S17755.  Gene #1759: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TOMM70A MUTATED 2 0 0 0 2 2 0 3 1
TOMM70A WILD-TYPE 67 48 39 16 51 18 21 35 49
'TOMM70A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.13

Table S17756.  Gene #1759: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TOMM70A MUTATED 0 0 3 0 0 0
TOMM70A WILD-TYPE 13 16 11 11 11 9

Figure S4469.  Get High-res Image Gene #1759: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TOMM70A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S17757.  Gene #1759: 'TOMM70A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TOMM70A MUTATED 0 0 0 0 2 0 1 0 0
TOMM70A WILD-TYPE 11 7 7 9 6 7 10 9 5
'RRP9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S17758.  Gene #1760: 'RRP9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RRP9 MUTATED 2 0 1 1 0
RRP9 WILD-TYPE 30 18 45 26 23
'RRP9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S17759.  Gene #1760: 'RRP9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RRP9 MUTATED 3 1 0
RRP9 WILD-TYPE 40 66 36
'RRP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S17760.  Gene #1760: 'RRP9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RRP9 MUTATED 0 4 8
RRP9 WILD-TYPE 42 169 139
'RRP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.41

Table S17761.  Gene #1760: 'RRP9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RRP9 MUTATED 3 0 4
RRP9 WILD-TYPE 59 73 71
'RRP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 0.28

Table S17762.  Gene #1760: 'RRP9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RRP9 MUTATED 0 3 6
RRP9 WILD-TYPE 70 117 94
'RRP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S17763.  Gene #1760: 'RRP9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RRP9 MUTATED 0 0 1 1 1 5 0 0 1
RRP9 WILD-TYPE 41 26 29 28 38 64 20 14 21
'RRP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S17764.  Gene #1760: 'RRP9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RRP9 MUTATED 3 2 2 5
RRP9 WILD-TYPE 97 70 70 116
'RRP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S17765.  Gene #1760: 'RRP9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RRP9 MUTATED 1 2 4 2 3
RRP9 WILD-TYPE 58 73 70 117 35
'RRP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S17766.  Gene #1760: 'RRP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RRP9 MUTATED 1 4 2 2 3
RRP9 WILD-TYPE 50 72 59 69 92
'RRP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S17767.  Gene #1760: 'RRP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RRP9 MUTATED 1 2 2 2 0 0 2 2 1
RRP9 WILD-TYPE 68 46 37 14 53 20 19 36 49
'FSTL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00186 (Fisher's exact test), Q value = 0.036

Table S17768.  Gene #1761: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FSTL4 MUTATED 0 2 13
FSTL4 WILD-TYPE 42 171 134

Figure S4470.  Get High-res Image Gene #1761: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FSTL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.097

Table S17769.  Gene #1761: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FSTL4 MUTATED 6 0 7
FSTL4 WILD-TYPE 56 73 68

Figure S4471.  Get High-res Image Gene #1761: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FSTL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.11

Table S17770.  Gene #1761: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FSTL4 MUTATED 0 4 9
FSTL4 WILD-TYPE 70 116 91

Figure S4472.  Get High-res Image Gene #1761: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FSTL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S17771.  Gene #1761: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FSTL4 MUTATED 1 1 0 2 0 7 2 0 0
FSTL4 WILD-TYPE 40 25 30 27 39 62 18 14 22
'FSTL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00316 (Fisher's exact test), Q value = 0.049

Table S17772.  Gene #1761: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FSTL4 MUTATED 0 6 6 3
FSTL4 WILD-TYPE 100 66 66 118

Figure S4473.  Get High-res Image Gene #1761: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FSTL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00955 (Fisher's exact test), Q value = 0.092

Table S17773.  Gene #1761: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FSTL4 MUTATED 2 1 9 3 0
FSTL4 WILD-TYPE 57 74 65 116 38

Figure S4474.  Get High-res Image Gene #1761: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FSTL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00116 (Fisher's exact test), Q value = 0.027

Table S17774.  Gene #1761: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FSTL4 MUTATED 1 10 1 0 3
FSTL4 WILD-TYPE 50 66 60 71 92

Figure S4475.  Get High-res Image Gene #1761: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FSTL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S17775.  Gene #1761: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FSTL4 MUTATED 3 4 1 3 2 0 1 0 1
FSTL4 WILD-TYPE 66 44 38 13 51 20 20 38 49
'FSTL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.91

Table S17776.  Gene #1761: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FSTL4 MUTATED 0 0 1 1 1 1
FSTL4 WILD-TYPE 13 16 13 10 10 8
'FSTL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S17777.  Gene #1761: 'FSTL4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FSTL4 MUTATED 1 0 0 0 1 0 2 0 0
FSTL4 WILD-TYPE 10 7 7 9 7 7 9 9 5
'HIST4H4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S17778.  Gene #1762: 'HIST4H4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HIST4H4 MUTATED 0 1 2
HIST4H4 WILD-TYPE 42 172 145
'HIST4H4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S17779.  Gene #1762: 'HIST4H4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HIST4H4 MUTATED 0 1 2
HIST4H4 WILD-TYPE 62 72 73
'HIST4H4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.12

Table S17780.  Gene #1762: 'HIST4H4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HIST4H4 MUTATED 0 3 0 0
HIST4H4 WILD-TYPE 100 69 72 121

Figure S4476.  Get High-res Image Gene #1762: 'HIST4H4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HIST4H4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S17781.  Gene #1762: 'HIST4H4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HIST4H4 MUTATED 0 1 2 0 0
HIST4H4 WILD-TYPE 59 74 72 119 38
'HIST4H4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S17782.  Gene #1762: 'HIST4H4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HIST4H4 MUTATED 1 2 0 0 0
HIST4H4 WILD-TYPE 50 74 61 71 95
'HIST4H4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.64

Table S17783.  Gene #1762: 'HIST4H4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HIST4H4 MUTATED 2 0 0 0 0 1 0 0 0
HIST4H4 WILD-TYPE 67 48 39 16 53 19 21 38 50
'C1ORF88 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S17784.  Gene #1763: 'C1ORF88 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C1ORF88 MUTATED 0 1 5
C1ORF88 WILD-TYPE 42 172 142
'C1ORF88 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17785.  Gene #1763: 'C1ORF88 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C1ORF88 MUTATED 1 1 2
C1ORF88 WILD-TYPE 61 72 73
'C1ORF88 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S17786.  Gene #1763: 'C1ORF88 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C1ORF88 MUTATED 1 3 1
C1ORF88 WILD-TYPE 69 117 99
'C1ORF88 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.79

Table S17787.  Gene #1763: 'C1ORF88 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C1ORF88 MUTATED 2 1 1 0 1 0 0 0 0
C1ORF88 WILD-TYPE 39 25 29 29 38 69 20 14 22
'C1ORF88 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17788.  Gene #1763: 'C1ORF88 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C1ORF88 MUTATED 2 1 1 2
C1ORF88 WILD-TYPE 98 71 71 119
'C1ORF88 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S17789.  Gene #1763: 'C1ORF88 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C1ORF88 MUTATED 1 2 1 1 1
C1ORF88 WILD-TYPE 58 73 73 118 37
'C1ORF88 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S17790.  Gene #1763: 'C1ORF88 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C1ORF88 MUTATED 1 2 1 0 2
C1ORF88 WILD-TYPE 50 74 60 71 93
'C1ORF88 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S17791.  Gene #1763: 'C1ORF88 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C1ORF88 MUTATED 1 1 1 1 0 1 0 1 0
C1ORF88 WILD-TYPE 68 47 38 15 53 19 21 37 50
'SESTD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S17792.  Gene #1764: 'SESTD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SESTD1 MUTATED 3 1 0 1 1
SESTD1 WILD-TYPE 29 17 46 26 22
'SESTD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.7

Table S17793.  Gene #1764: 'SESTD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SESTD1 MUTATED 3 3 0
SESTD1 WILD-TYPE 40 64 36
'SESTD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00565 (Fisher's exact test), Q value = 0.071

Table S17794.  Gene #1764: 'SESTD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SESTD1 MUTATED 1 2 12
SESTD1 WILD-TYPE 41 171 135

Figure S4477.  Get High-res Image Gene #1764: 'SESTD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SESTD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S17795.  Gene #1764: 'SESTD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SESTD1 MUTATED 4 1 4
SESTD1 WILD-TYPE 58 72 71
'SESTD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00962 (Fisher's exact test), Q value = 0.092

Table S17796.  Gene #1764: 'SESTD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SESTD1 MUTATED 4 1 9
SESTD1 WILD-TYPE 66 119 91

Figure S4478.  Get High-res Image Gene #1764: 'SESTD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SESTD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S17797.  Gene #1764: 'SESTD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SESTD1 MUTATED 4 0 1 1 1 7 0 0 0
SESTD1 WILD-TYPE 37 26 29 28 38 62 20 14 22
'SESTD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.19

Table S17798.  Gene #1764: 'SESTD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SESTD1 MUTATED 0 4 5 6
SESTD1 WILD-TYPE 100 68 67 115

Figure S4479.  Get High-res Image Gene #1764: 'SESTD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SESTD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S17799.  Gene #1764: 'SESTD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SESTD1 MUTATED 2 1 6 3 3
SESTD1 WILD-TYPE 57 74 68 116 35
'SESTD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.57

Table S17800.  Gene #1764: 'SESTD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SESTD1 MUTATED 0 5 3 1 5
SESTD1 WILD-TYPE 51 71 58 70 90
'SESTD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S17801.  Gene #1764: 'SESTD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SESTD1 MUTATED 1 4 0 2 3 0 0 3 1
SESTD1 WILD-TYPE 68 44 39 14 50 20 21 35 49
'SESTD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.6

Table S17802.  Gene #1764: 'SESTD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SESTD1 MUTATED 0 0 1 1 2 0
SESTD1 WILD-TYPE 13 16 13 10 9 9
'SESTD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S17803.  Gene #1764: 'SESTD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SESTD1 MUTATED 0 0 1 2 0 0 1 0 0
SESTD1 WILD-TYPE 11 7 6 7 8 7 10 9 5
'CAPZA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.89

Table S17804.  Gene #1765: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CAPZA3 MUTATED 2 0 1 0 0
CAPZA3 WILD-TYPE 30 18 45 27 23
'CAPZA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S17805.  Gene #1765: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CAPZA3 MUTATED 2 1 0
CAPZA3 WILD-TYPE 41 66 36
'CAPZA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S17806.  Gene #1765: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CAPZA3 MUTATED 0 3 6
CAPZA3 WILD-TYPE 42 170 141
'CAPZA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.11

Table S17807.  Gene #1765: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CAPZA3 MUTATED 5 0 1
CAPZA3 WILD-TYPE 57 73 74

Figure S4480.  Get High-res Image Gene #1765: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CAPZA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S17808.  Gene #1765: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CAPZA3 MUTATED 1 3 5
CAPZA3 WILD-TYPE 69 117 95
'CAPZA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.42

Table S17809.  Gene #1765: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CAPZA3 MUTATED 0 0 2 0 0 3 2 1 1
CAPZA3 WILD-TYPE 41 26 28 29 39 66 18 13 21
'CAPZA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S17810.  Gene #1765: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CAPZA3 MUTATED 0 4 2 3
CAPZA3 WILD-TYPE 100 68 70 118
'CAPZA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S17811.  Gene #1765: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CAPZA3 MUTATED 1 2 3 1 2
CAPZA3 WILD-TYPE 58 73 71 118 36
'CAPZA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S17812.  Gene #1765: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CAPZA3 MUTATED 0 4 1 0 4
CAPZA3 WILD-TYPE 51 72 60 71 91
'CAPZA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S17813.  Gene #1765: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CAPZA3 MUTATED 3 1 1 0 0 1 0 2 1
CAPZA3 WILD-TYPE 66 47 38 16 53 19 21 36 49
'LGALS9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0633 (Fisher's exact test), Q value = 0.27

Table S17814.  Gene #1766: 'LGALS9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LGALS9 MUTATED 0 0 4
LGALS9 WILD-TYPE 42 173 143
'LGALS9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S17815.  Gene #1766: 'LGALS9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LGALS9 MUTATED 1 0 2
LGALS9 WILD-TYPE 61 73 73
'LGALS9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S17816.  Gene #1766: 'LGALS9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LGALS9 MUTATED 1 1 2
LGALS9 WILD-TYPE 69 119 98
'LGALS9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S17817.  Gene #1766: 'LGALS9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LGALS9 MUTATED 0 0 0 1 1 2 0 0 0
LGALS9 WILD-TYPE 41 26 30 28 38 67 20 14 22
'LGALS9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S17818.  Gene #1766: 'LGALS9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LGALS9 MUTATED 0 2 1 1
LGALS9 WILD-TYPE 100 70 71 120
'LGALS9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.47

Table S17819.  Gene #1766: 'LGALS9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LGALS9 MUTATED 0 0 3 1 0
LGALS9 WILD-TYPE 59 75 71 118 38
'LGALS9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S17820.  Gene #1766: 'LGALS9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LGALS9 MUTATED 0 1 1 0 2
LGALS9 WILD-TYPE 51 75 60 71 93
'LGALS9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S17821.  Gene #1766: 'LGALS9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LGALS9 MUTATED 1 1 0 0 0 0 1 1 0
LGALS9 WILD-TYPE 68 47 39 16 53 20 20 37 50
'MC3R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.84

Table S17822.  Gene #1767: 'MC3R MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MC3R MUTATED 0 8 5
MC3R WILD-TYPE 42 165 142
'MC3R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.67

Table S17823.  Gene #1767: 'MC3R MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MC3R MUTATED 4 6 2
MC3R WILD-TYPE 58 67 73
'MC3R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 0.97

Table S17824.  Gene #1767: 'MC3R MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MC3R MUTATED 2 5 6
MC3R WILD-TYPE 68 115 94
'MC3R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 0.97

Table S17825.  Gene #1767: 'MC3R MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MC3R MUTATED 2 0 2 2 0 5 1 0 1
MC3R WILD-TYPE 39 26 28 27 39 64 19 14 21
'MC3R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S17826.  Gene #1767: 'MC3R MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MC3R MUTATED 6 3 3 1
MC3R WILD-TYPE 94 69 69 120
'MC3R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0824 (Fisher's exact test), Q value = 0.31

Table S17827.  Gene #1767: 'MC3R MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MC3R MUTATED 3 5 4 1 0
MC3R WILD-TYPE 56 70 70 118 38
'MC3R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S17828.  Gene #1767: 'MC3R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MC3R MUTATED 3 5 3 1 1
MC3R WILD-TYPE 48 71 58 70 94
'MC3R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00304 (Fisher's exact test), Q value = 0.048

Table S17829.  Gene #1767: 'MC3R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MC3R MUTATED 5 1 2 1 0 4 0 0 0
MC3R WILD-TYPE 64 47 37 15 53 16 21 38 50

Figure S4481.  Get High-res Image Gene #1767: 'MC3R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MC3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S17830.  Gene #1767: 'MC3R MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MC3R MUTATED 1 1 0 1 0 1
MC3R WILD-TYPE 12 15 14 10 11 8
'MC3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.51

Table S17831.  Gene #1767: 'MC3R MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MC3R MUTATED 2 0 1 0 0 0 0 0 1
MC3R WILD-TYPE 9 7 6 9 8 7 11 9 4
'ACTL6B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S17832.  Gene #1768: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ACTL6B MUTATED 1 5 3
ACTL6B WILD-TYPE 41 168 144
'ACTL6B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S17833.  Gene #1768: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ACTL6B MUTATED 0 2 5
ACTL6B WILD-TYPE 62 71 70
'ACTL6B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S17834.  Gene #1768: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ACTL6B MUTATED 0 2 5
ACTL6B WILD-TYPE 70 118 95
'ACTL6B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S17835.  Gene #1768: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ACTL6B MUTATED 1 0 1 1 0 3 1 0 0
ACTL6B WILD-TYPE 40 26 29 28 39 66 19 14 22
'ACTL6B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.93

Table S17836.  Gene #1768: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ACTL6B MUTATED 3 3 1 2
ACTL6B WILD-TYPE 97 69 71 119
'ACTL6B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S17837.  Gene #1768: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ACTL6B MUTATED 2 2 3 1 1
ACTL6B WILD-TYPE 57 73 71 118 37
'ACTL6B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.61

Table S17838.  Gene #1768: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ACTL6B MUTATED 2 4 1 0 2
ACTL6B WILD-TYPE 49 72 60 71 93
'ACTL6B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.7

Table S17839.  Gene #1768: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ACTL6B MUTATED 5 1 1 0 0 0 1 0 1
ACTL6B WILD-TYPE 64 47 38 16 53 20 20 38 49
'BACH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S17840.  Gene #1769: 'BACH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BACH2 MUTATED 1 0 1 2 1
BACH2 WILD-TYPE 31 18 45 25 22
'BACH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.84

Table S17841.  Gene #1769: 'BACH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BACH2 MUTATED 2 1 2
BACH2 WILD-TYPE 41 66 34
'BACH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.61

Table S17842.  Gene #1769: 'BACH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BACH2 MUTATED 3 5 8
BACH2 WILD-TYPE 39 168 139
'BACH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00058 (Fisher's exact test), Q value = 0.018

Table S17843.  Gene #1769: 'BACH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BACH2 MUTATED 9 1 1
BACH2 WILD-TYPE 53 72 74

Figure S4482.  Get High-res Image Gene #1769: 'BACH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BACH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S17844.  Gene #1769: 'BACH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BACH2 MUTATED 2 4 9
BACH2 WILD-TYPE 68 116 91
'BACH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S17845.  Gene #1769: 'BACH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BACH2 MUTATED 3 1 1 2 1 6 1 0 0
BACH2 WILD-TYPE 38 25 29 27 38 63 19 14 22
'BACH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.1

Table S17846.  Gene #1769: 'BACH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BACH2 MUTATED 0 5 6 5
BACH2 WILD-TYPE 100 67 66 116

Figure S4483.  Get High-res Image Gene #1769: 'BACH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BACH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.64

Table S17847.  Gene #1769: 'BACH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BACH2 MUTATED 3 1 6 4 2
BACH2 WILD-TYPE 56 74 68 115 36
'BACH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.71

Table S17848.  Gene #1769: 'BACH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BACH2 MUTATED 2 7 2 2 3
BACH2 WILD-TYPE 49 69 59 69 92
'BACH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.28

Table S17849.  Gene #1769: 'BACH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BACH2 MUTATED 3 5 0 1 0 2 2 2 1
BACH2 WILD-TYPE 66 43 39 15 53 18 19 36 49
'BACH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S17850.  Gene #1769: 'BACH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
BACH2 MUTATED 0 1 1 0 2 0
BACH2 WILD-TYPE 13 15 13 11 9 9
'BACH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.75

Table S17851.  Gene #1769: 'BACH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
BACH2 MUTATED 2 0 0 0 0 0 2 0 0
BACH2 WILD-TYPE 9 7 7 9 8 7 9 9 5
'PGM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17852.  Gene #1770: 'PGM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PGM2 MUTATED 0 2 1
PGM2 WILD-TYPE 42 171 146
'PGM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S17853.  Gene #1770: 'PGM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PGM2 MUTATED 1 0 2
PGM2 WILD-TYPE 61 73 73
'PGM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.92

Table S17854.  Gene #1770: 'PGM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PGM2 MUTATED 0 1 2
PGM2 WILD-TYPE 70 119 98
'PGM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17855.  Gene #1770: 'PGM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PGM2 MUTATED 1 0 0 0 1 1 0 0 0
PGM2 WILD-TYPE 40 26 30 29 38 68 20 14 22
'PGM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.74

Table S17856.  Gene #1770: 'PGM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PGM2 MUTATED 1 1 1 0
PGM2 WILD-TYPE 99 71 71 121
'PGM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0988 (Fisher's exact test), Q value = 0.34

Table S17857.  Gene #1770: 'PGM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PGM2 MUTATED 2 0 1 0 0
PGM2 WILD-TYPE 57 75 73 119 38
'PGM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.48

Table S17858.  Gene #1770: 'PGM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PGM2 MUTATED 1 2 0 0 0
PGM2 WILD-TYPE 50 74 61 71 95
'PGM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.72

Table S17859.  Gene #1770: 'PGM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PGM2 MUTATED 1 1 0 1 0 0 0 0 0
PGM2 WILD-TYPE 68 47 39 15 53 20 21 38 50
'EPHB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.58

Table S17860.  Gene #1771: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
EPHB1 MUTATED 1 0 0 2 1
EPHB1 WILD-TYPE 31 18 46 25 22
'EPHB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S17861.  Gene #1771: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
EPHB1 MUTATED 2 1 1
EPHB1 WILD-TYPE 41 66 35
'EPHB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S17862.  Gene #1771: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EPHB1 MUTATED 6 14 16
EPHB1 WILD-TYPE 36 159 131
'EPHB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S17863.  Gene #1771: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EPHB1 MUTATED 10 10 9
EPHB1 WILD-TYPE 52 63 66
'EPHB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 0.31

Table S17864.  Gene #1771: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EPHB1 MUTATED 7 8 16
EPHB1 WILD-TYPE 63 112 84
'EPHB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S17865.  Gene #1771: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EPHB1 MUTATED 3 2 1 1 5 14 2 2 1
EPHB1 WILD-TYPE 38 24 29 28 34 55 18 12 21
'EPHB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00316 (Fisher's exact test), Q value = 0.049

Table S17866.  Gene #1771: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EPHB1 MUTATED 11 11 10 3
EPHB1 WILD-TYPE 89 61 62 118

Figure S4484.  Get High-res Image Gene #1771: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EPHB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0034

Table S17867.  Gene #1771: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EPHB1 MUTATED 4 13 14 1 3
EPHB1 WILD-TYPE 55 62 60 118 35

Figure S4485.  Get High-res Image Gene #1771: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EPHB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0095 (Fisher's exact test), Q value = 0.092

Table S17868.  Gene #1771: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EPHB1 MUTATED 9 13 6 2 6
EPHB1 WILD-TYPE 42 63 55 69 89

Figure S4486.  Get High-res Image Gene #1771: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EPHB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S17869.  Gene #1771: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EPHB1 MUTATED 10 5 4 2 7 2 1 3 2
EPHB1 WILD-TYPE 59 43 35 14 46 18 20 35 48
'EPHB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.995 (Fisher's exact test), Q value = 1

Table S17870.  Gene #1771: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
EPHB1 MUTATED 2 3 2 1 2 1
EPHB1 WILD-TYPE 11 13 12 10 9 8
'EPHB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S17871.  Gene #1771: 'EPHB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
EPHB1 MUTATED 3 0 1 1 1 1 2 1 1
EPHB1 WILD-TYPE 8 7 6 8 7 6 9 8 4
'NFS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.19

Table S17872.  Gene #1772: 'NFS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NFS1 MUTATED 0 0 5
NFS1 WILD-TYPE 42 173 142

Figure S4487.  Get High-res Image Gene #1772: 'NFS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NFS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S17873.  Gene #1772: 'NFS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NFS1 MUTATED 0 1 4
NFS1 WILD-TYPE 70 119 96
'NFS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.8

Table S17874.  Gene #1772: 'NFS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NFS1 MUTATED 0 0 1 0 0 4 0 0 0
NFS1 WILD-TYPE 41 26 29 29 39 65 20 14 22
'NFS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.81

Table S17875.  Gene #1772: 'NFS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NFS1 MUTATED 0 1 1 3
NFS1 WILD-TYPE 100 71 71 118
'NFS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0021 (Fisher's exact test), Q value = 0.039

Table S17876.  Gene #1772: 'NFS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NFS1 MUTATED 0 0 2 0 3
NFS1 WILD-TYPE 59 75 72 119 35

Figure S4488.  Get High-res Image Gene #1772: 'NFS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NFS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.82

Table S17877.  Gene #1772: 'NFS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NFS1 MUTATED 0 2 0 0 2
NFS1 WILD-TYPE 51 74 61 71 93
'NFS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0663 (Fisher's exact test), Q value = 0.28

Table S17878.  Gene #1772: 'NFS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NFS1 MUTATED 0 1 0 1 0 0 0 2 0
NFS1 WILD-TYPE 69 47 39 15 53 20 21 36 50
'CLDN17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 0.3

Table S17879.  Gene #1773: 'CLDN17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CLDN17 MUTATED 3 0 0 2 0
CLDN17 WILD-TYPE 29 18 46 25 23
'CLDN17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0662 (Fisher's exact test), Q value = 0.28

Table S17880.  Gene #1773: 'CLDN17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CLDN17 MUTATED 4 1 0
CLDN17 WILD-TYPE 39 66 36
'CLDN17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0975 (Fisher's exact test), Q value = 0.34

Table S17881.  Gene #1773: 'CLDN17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CLDN17 MUTATED 1 3 9
CLDN17 WILD-TYPE 41 170 138
'CLDN17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.14

Table S17882.  Gene #1773: 'CLDN17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CLDN17 MUTATED 6 1 1
CLDN17 WILD-TYPE 56 72 74

Figure S4489.  Get High-res Image Gene #1773: 'CLDN17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CLDN17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0334 (Fisher's exact test), Q value = 0.19

Table S17883.  Gene #1773: 'CLDN17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CLDN17 MUTATED 1 2 8
CLDN17 WILD-TYPE 69 118 92

Figure S4490.  Get High-res Image Gene #1773: 'CLDN17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CLDN17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.88

Table S17884.  Gene #1773: 'CLDN17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CLDN17 MUTATED 3 0 1 1 0 5 1 0 0
CLDN17 WILD-TYPE 38 26 29 28 39 64 19 14 22
'CLDN17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S17885.  Gene #1773: 'CLDN17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CLDN17 MUTATED 2 1 5 5
CLDN17 WILD-TYPE 98 71 67 116
'CLDN17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.055 (Fisher's exact test), Q value = 0.25

Table S17886.  Gene #1773: 'CLDN17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CLDN17 MUTATED 3 3 2 1 4
CLDN17 WILD-TYPE 56 72 72 118 34
'CLDN17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.7

Table S17887.  Gene #1773: 'CLDN17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CLDN17 MUTATED 1 3 3 0 4
CLDN17 WILD-TYPE 50 73 58 71 91
'CLDN17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S17888.  Gene #1773: 'CLDN17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CLDN17 MUTATED 1 3 2 0 1 1 0 2 1
CLDN17 WILD-TYPE 68 45 37 16 52 19 21 36 49
'CLDN17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S17889.  Gene #1773: 'CLDN17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CLDN17 MUTATED 1 1 2 1 0 0
CLDN17 WILD-TYPE 12 15 12 10 11 9
'CLDN17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.8

Table S17890.  Gene #1773: 'CLDN17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CLDN17 MUTATED 0 0 0 0 2 1 1 1 0
CLDN17 WILD-TYPE 11 7 7 9 6 6 10 8 5
'UEVLD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S17891.  Gene #1774: 'UEVLD MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UEVLD MUTATED 0 0 3
UEVLD WILD-TYPE 42 173 144
'UEVLD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S17892.  Gene #1774: 'UEVLD MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UEVLD MUTATED 2 0 1
UEVLD WILD-TYPE 60 73 74
'UEVLD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 0.31

Table S17893.  Gene #1774: 'UEVLD MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UEVLD MUTATED 0 2 1 0
UEVLD WILD-TYPE 100 70 71 121
'UEVLD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S17894.  Gene #1774: 'UEVLD MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UEVLD MUTATED 0 1 2 0 0
UEVLD WILD-TYPE 59 74 72 119 38
'UEVLD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S17895.  Gene #1774: 'UEVLD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UEVLD MUTATED 0 1 1 0 1
UEVLD WILD-TYPE 51 75 60 71 94
'UEVLD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.74

Table S17896.  Gene #1774: 'UEVLD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UEVLD MUTATED 0 0 0 0 1 1 0 0 1
UEVLD WILD-TYPE 69 48 39 16 52 19 21 38 49
'GABRQ MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00768 (Fisher's exact test), Q value = 0.082

Table S17897.  Gene #1775: 'GABRQ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GABRQ MUTATED 5 0 0 1 0
GABRQ WILD-TYPE 27 18 46 26 23

Figure S4491.  Get High-res Image Gene #1775: 'GABRQ MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GABRQ MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.36

Table S17898.  Gene #1775: 'GABRQ MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GABRQ MUTATED 4 1 1
GABRQ WILD-TYPE 39 66 35
'GABRQ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.37

Table S17899.  Gene #1775: 'GABRQ MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GABRQ MUTATED 1 4 10
GABRQ WILD-TYPE 41 169 137
'GABRQ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.94

Table S17900.  Gene #1775: 'GABRQ MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GABRQ MUTATED 4 2 3
GABRQ WILD-TYPE 58 71 72
'GABRQ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.5

Table S17901.  Gene #1775: 'GABRQ MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GABRQ MUTATED 1 5 7
GABRQ WILD-TYPE 69 115 93
'GABRQ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S17902.  Gene #1775: 'GABRQ MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GABRQ MUTATED 2 0 1 1 1 5 1 1 1
GABRQ WILD-TYPE 39 26 29 28 38 64 19 13 21
'GABRQ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S17903.  Gene #1775: 'GABRQ MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GABRQ MUTATED 1 5 3 6
GABRQ WILD-TYPE 99 67 69 115
'GABRQ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.097

Table S17904.  Gene #1775: 'GABRQ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GABRQ MUTATED 2 2 5 1 5
GABRQ WILD-TYPE 57 73 69 118 33

Figure S4492.  Get High-res Image Gene #1775: 'GABRQ MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GABRQ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.988 (Fisher's exact test), Q value = 1

Table S17905.  Gene #1775: 'GABRQ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GABRQ MUTATED 2 3 2 3 5
GABRQ WILD-TYPE 49 73 59 68 90
'GABRQ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0383 (Fisher's exact test), Q value = 0.21

Table S17906.  Gene #1775: 'GABRQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GABRQ MUTATED 1 2 0 2 3 2 2 3 0
GABRQ WILD-TYPE 68 46 39 14 50 18 19 35 50

Figure S4493.  Get High-res Image Gene #1775: 'GABRQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GABRQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17907.  Gene #1775: 'GABRQ MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GABRQ MUTATED 1 1 1 0 0 0
GABRQ WILD-TYPE 12 15 13 11 11 9
'GABRQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.86

Table S17908.  Gene #1775: 'GABRQ MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GABRQ MUTATED 0 0 0 1 1 1 0 0 0
GABRQ WILD-TYPE 11 7 7 8 7 6 11 9 5
'NTSR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0982 (Fisher's exact test), Q value = 0.34

Table S17909.  Gene #1776: 'NTSR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
NTSR2 MUTATED 3 0 0 1 0
NTSR2 WILD-TYPE 29 18 46 26 23
'NTSR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.095

Table S17910.  Gene #1776: 'NTSR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
NTSR2 MUTATED 4 0 0
NTSR2 WILD-TYPE 39 67 36

Figure S4494.  Get High-res Image Gene #1776: 'NTSR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NTSR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.21

Table S17911.  Gene #1776: 'NTSR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NTSR2 MUTATED 0 1 7
NTSR2 WILD-TYPE 42 172 140

Figure S4495.  Get High-res Image Gene #1776: 'NTSR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NTSR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S17912.  Gene #1776: 'NTSR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NTSR2 MUTATED 2 1 1
NTSR2 WILD-TYPE 60 72 74
'NTSR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S17913.  Gene #1776: 'NTSR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NTSR2 MUTATED 1 3 4
NTSR2 WILD-TYPE 69 117 96
'NTSR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S17914.  Gene #1776: 'NTSR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NTSR2 MUTATED 2 0 0 0 4 1 0 1 0
NTSR2 WILD-TYPE 39 26 30 29 35 68 20 13 22
'NTSR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S17915.  Gene #1776: 'NTSR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NTSR2 MUTATED 0 3 1 4
NTSR2 WILD-TYPE 100 69 71 117
'NTSR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00104 (Fisher's exact test), Q value = 0.025

Table S17916.  Gene #1776: 'NTSR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NTSR2 MUTATED 1 0 3 0 4
NTSR2 WILD-TYPE 58 75 71 119 34

Figure S4496.  Get High-res Image Gene #1776: 'NTSR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NTSR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.93

Table S17917.  Gene #1776: 'NTSR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NTSR2 MUTATED 0 1 1 1 4
NTSR2 WILD-TYPE 51 75 60 70 91
'NTSR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.54

Table S17918.  Gene #1776: 'NTSR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NTSR2 MUTATED 1 1 0 1 1 0 0 3 0
NTSR2 WILD-TYPE 68 47 39 15 52 20 21 35 50
'FRAS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00395 (Fisher's exact test), Q value = 0.056

Table S17919.  Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FRAS1 MUTATED 6 1 0 1 0
FRAS1 WILD-TYPE 26 17 46 26 23

Figure S4497.  Get High-res Image Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FRAS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0843 (Fisher's exact test), Q value = 0.31

Table S17920.  Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FRAS1 MUTATED 5 3 0
FRAS1 WILD-TYPE 38 64 36
'FRAS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0062

Table S17921.  Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FRAS1 MUTATED 2 7 26
FRAS1 WILD-TYPE 40 166 121

Figure S4498.  Get High-res Image Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FRAS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S17922.  Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FRAS1 MUTATED 10 6 12
FRAS1 WILD-TYPE 52 67 63
'FRAS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.38

Table S17923.  Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FRAS1 MUTATED 6 10 17
FRAS1 WILD-TYPE 64 110 83
'FRAS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S17924.  Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FRAS1 MUTATED 1 2 2 4 3 14 3 2 2
FRAS1 WILD-TYPE 40 24 28 25 36 55 17 12 20
'FRAS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.018

Table S17925.  Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FRAS1 MUTATED 3 15 10 8
FRAS1 WILD-TYPE 97 57 62 113

Figure S4499.  Get High-res Image Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FRAS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00036 (Fisher's exact test), Q value = 0.013

Table S17926.  Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FRAS1 MUTATED 4 5 18 5 4
FRAS1 WILD-TYPE 55 70 56 114 34

Figure S4500.  Get High-res Image Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FRAS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.11

Table S17927.  Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FRAS1 MUTATED 4 17 5 5 6
FRAS1 WILD-TYPE 47 59 56 66 89

Figure S4501.  Get High-res Image Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FRAS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.21

Table S17928.  Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FRAS1 MUTATED 8 6 2 6 4 2 4 3 2
FRAS1 WILD-TYPE 61 42 37 10 49 18 17 35 48

Figure S4502.  Get High-res Image Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FRAS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.99

Table S17929.  Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FRAS1 MUTATED 1 1 1 1 3 1
FRAS1 WILD-TYPE 12 15 13 10 8 8
'FRAS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S17930.  Gene #1777: 'FRAS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FRAS1 MUTATED 2 0 0 2 1 0 2 1 0
FRAS1 WILD-TYPE 9 7 7 7 7 7 9 8 5
'NDUFV2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0942 (Fisher's exact test), Q value = 0.33

Table S17931.  Gene #1778: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NDUFV2 MUTATED 1 0 2
NDUFV2 WILD-TYPE 41 173 145
'NDUFV2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17932.  Gene #1778: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NDUFV2 MUTATED 1 1 1
NDUFV2 WILD-TYPE 61 72 74
'NDUFV2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.74

Table S17933.  Gene #1778: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NDUFV2 MUTATED 1 1 1 0
NDUFV2 WILD-TYPE 99 71 71 121
'NDUFV2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S17934.  Gene #1778: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NDUFV2 MUTATED 0 1 2 0 0
NDUFV2 WILD-TYPE 59 74 72 119 38
'NDUFV2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S17935.  Gene #1778: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NDUFV2 MUTATED 1 2 0 0 0
NDUFV2 WILD-TYPE 50 74 61 71 95
'NDUFV2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S17936.  Gene #1778: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NDUFV2 MUTATED 1 1 1 0 0 0 0 0 0
NDUFV2 WILD-TYPE 68 47 38 16 53 20 21 38 50
'ATP2B4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.29

Table S17937.  Gene #1779: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATP2B4 MUTATED 3 0 0 2 0
ATP2B4 WILD-TYPE 29 18 46 25 23
'ATP2B4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S17938.  Gene #1779: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATP2B4 MUTATED 2 2 1
ATP2B4 WILD-TYPE 41 65 35
'ATP2B4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 0.25

Table S17939.  Gene #1779: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATP2B4 MUTATED 3 4 11
ATP2B4 WILD-TYPE 39 169 136
'ATP2B4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S17940.  Gene #1779: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATP2B4 MUTATED 3 6 4
ATP2B4 WILD-TYPE 59 67 71
'ATP2B4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.25

Table S17941.  Gene #1779: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATP2B4 MUTATED 0 8 6
ATP2B4 WILD-TYPE 70 112 94
'ATP2B4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0931 (Fisher's exact test), Q value = 0.33

Table S17942.  Gene #1779: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATP2B4 MUTATED 0 3 1 2 0 5 0 2 1
ATP2B4 WILD-TYPE 41 23 29 27 39 64 20 12 21
'ATP2B4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S17943.  Gene #1779: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATP2B4 MUTATED 7 5 2 4
ATP2B4 WILD-TYPE 93 67 70 117
'ATP2B4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S17944.  Gene #1779: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATP2B4 MUTATED 4 4 5 3 2
ATP2B4 WILD-TYPE 55 71 69 116 36
'ATP2B4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.84

Table S17945.  Gene #1779: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATP2B4 MUTATED 4 6 2 2 4
ATP2B4 WILD-TYPE 47 70 59 69 91
'ATP2B4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.89

Table S17946.  Gene #1779: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATP2B4 MUTATED 3 3 4 2 2 1 0 2 1
ATP2B4 WILD-TYPE 66 45 35 14 51 19 21 36 49
'ATP2B4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.65

Table S17947.  Gene #1779: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ATP2B4 MUTATED 0 1 0 1 2 0
ATP2B4 WILD-TYPE 13 15 14 10 9 9
'ATP2B4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S17948.  Gene #1779: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ATP2B4 MUTATED 1 0 0 1 0 0 1 1 0
ATP2B4 WILD-TYPE 10 7 7 8 8 7 10 8 5
'PLEKHA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S17949.  Gene #1780: 'PLEKHA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PLEKHA4 MUTATED 0 4 5
PLEKHA4 WILD-TYPE 42 169 142
'PLEKHA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.65

Table S17950.  Gene #1780: 'PLEKHA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PLEKHA4 MUTATED 4 1 3
PLEKHA4 WILD-TYPE 58 72 72
'PLEKHA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S17951.  Gene #1780: 'PLEKHA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PLEKHA4 MUTATED 0 4 5
PLEKHA4 WILD-TYPE 70 116 95
'PLEKHA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S17952.  Gene #1780: 'PLEKHA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PLEKHA4 MUTATED 0 1 1 1 0 4 2 0 0
PLEKHA4 WILD-TYPE 41 25 29 28 39 65 18 14 22
'PLEKHA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.98

Table S17953.  Gene #1780: 'PLEKHA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PLEKHA4 MUTATED 3 2 3 2
PLEKHA4 WILD-TYPE 97 70 69 119
'PLEKHA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.63

Table S17954.  Gene #1780: 'PLEKHA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PLEKHA4 MUTATED 1 3 4 1 1
PLEKHA4 WILD-TYPE 58 72 70 118 37
'PLEKHA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.76

Table S17955.  Gene #1780: 'PLEKHA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PLEKHA4 MUTATED 2 4 0 2 2
PLEKHA4 WILD-TYPE 49 72 61 69 93
'PLEKHA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S17956.  Gene #1780: 'PLEKHA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PLEKHA4 MUTATED 2 2 0 0 2 1 0 1 2
PLEKHA4 WILD-TYPE 67 46 39 16 51 19 21 37 48
'PLEKHA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S17957.  Gene #1780: 'PLEKHA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PLEKHA4 MUTATED 1 0 1 0 1 0
PLEKHA4 WILD-TYPE 12 16 13 11 10 9
'PLEKHA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S17958.  Gene #1780: 'PLEKHA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PLEKHA4 MUTATED 0 0 0 1 0 0 1 1 0
PLEKHA4 WILD-TYPE 11 7 7 8 8 7 10 8 5
'AHNAK MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00158 (Fisher's exact test), Q value = 0.033

Table S17959.  Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AHNAK MUTATED 8 0 1 3 0
AHNAK WILD-TYPE 24 18 45 24 23

Figure S4503.  Get High-res Image Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'AHNAK MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.0087

Table S17960.  Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AHNAK MUTATED 10 2 0
AHNAK WILD-TYPE 33 65 36

Figure S4504.  Get High-res Image Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'AHNAK MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S17961.  Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AHNAK MUTATED 2 6 30
AHNAK WILD-TYPE 40 167 117

Figure S4505.  Get High-res Image Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AHNAK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0455 (Fisher's exact test), Q value = 0.23

Table S17962.  Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AHNAK MUTATED 12 4 9
AHNAK WILD-TYPE 50 69 66

Figure S4506.  Get High-res Image Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'AHNAK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S17963.  Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AHNAK MUTATED 5 16 16
AHNAK WILD-TYPE 65 104 84
'AHNAK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S17964.  Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AHNAK MUTATED 3 3 3 4 5 12 3 2 2
AHNAK WILD-TYPE 38 23 27 25 34 57 17 12 20
'AHNAK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0889 (Fisher's exact test), Q value = 0.32

Table S17965.  Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AHNAK MUTATED 5 12 8 14
AHNAK WILD-TYPE 95 60 64 107
'AHNAK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S17966.  Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AHNAK MUTATED 1 6 16 5 11
AHNAK WILD-TYPE 58 69 58 114 27

Figure S4507.  Get High-res Image Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AHNAK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.2

Table S17967.  Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AHNAK MUTATED 3 12 6 2 14
AHNAK WILD-TYPE 48 64 55 69 81

Figure S4508.  Get High-res Image Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'AHNAK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00108 (Fisher's exact test), Q value = 0.026

Table S17968.  Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AHNAK MUTATED 5 7 2 5 1 4 2 9 2
AHNAK WILD-TYPE 64 41 37 11 52 16 19 29 48

Figure S4509.  Get High-res Image Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'AHNAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.41

Table S17969.  Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
AHNAK MUTATED 1 1 1 0 4 1
AHNAK WILD-TYPE 12 15 13 11 7 8
'AHNAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.61

Table S17970.  Gene #1781: 'AHNAK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
AHNAK MUTATED 0 0 0 3 2 1 1 1 0
AHNAK WILD-TYPE 11 7 7 6 6 6 10 8 5
'TRIM25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0627 (Fisher's exact test), Q value = 0.27

Table S17971.  Gene #1782: 'TRIM25 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TRIM25 MUTATED 0 0 4
TRIM25 WILD-TYPE 42 173 143
'TRIM25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.95

Table S17972.  Gene #1782: 'TRIM25 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TRIM25 MUTATED 0 2 1
TRIM25 WILD-TYPE 62 71 74
'TRIM25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17973.  Gene #1782: 'TRIM25 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TRIM25 MUTATED 1 2 1
TRIM25 WILD-TYPE 69 118 99
'TRIM25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S17974.  Gene #1782: 'TRIM25 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TRIM25 MUTATED 0 0 0 0 2 2 0 0 0
TRIM25 WILD-TYPE 41 26 30 29 37 67 20 14 22
'TRIM25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S17975.  Gene #1782: 'TRIM25 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TRIM25 MUTATED 2 1 0 1
TRIM25 WILD-TYPE 98 71 72 120
'TRIM25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S17976.  Gene #1782: 'TRIM25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TRIM25 MUTATED 1 1 1 0 1
TRIM25 WILD-TYPE 58 74 73 119 37
'TRIM25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S17977.  Gene #1782: 'TRIM25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TRIM25 MUTATED 0 1 0 1 2
TRIM25 WILD-TYPE 51 75 61 70 93
'TRIM25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.66

Table S17978.  Gene #1782: 'TRIM25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TRIM25 MUTATED 2 0 0 0 0 0 0 2 0
TRIM25 WILD-TYPE 67 48 39 16 53 20 21 36 50
'STK10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00884 (Fisher's exact test), Q value = 0.088

Table S17979.  Gene #1783: 'STK10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
STK10 MUTATED 1 2 11
STK10 WILD-TYPE 41 171 136

Figure S4510.  Get High-res Image Gene #1783: 'STK10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STK10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.15

Table S17980.  Gene #1783: 'STK10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
STK10 MUTATED 4 0 7
STK10 WILD-TYPE 58 73 68

Figure S4511.  Get High-res Image Gene #1783: 'STK10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'STK10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.86

Table S17981.  Gene #1783: 'STK10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
STK10 MUTATED 1 5 5
STK10 WILD-TYPE 69 115 95
'STK10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S17982.  Gene #1783: 'STK10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
STK10 MUTATED 0 2 1 0 2 5 1 0 0
STK10 WILD-TYPE 41 24 29 29 37 64 19 14 22
'STK10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00107 (Fisher's exact test), Q value = 0.026

Table S17983.  Gene #1783: 'STK10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
STK10 MUTATED 1 9 2 2
STK10 WILD-TYPE 99 63 70 119

Figure S4512.  Get High-res Image Gene #1783: 'STK10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'STK10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00242 (Fisher's exact test), Q value = 0.042

Table S17984.  Gene #1783: 'STK10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
STK10 MUTATED 2 1 9 1 1
STK10 WILD-TYPE 57 74 65 118 37

Figure S4513.  Get High-res Image Gene #1783: 'STK10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STK10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00101 (Fisher's exact test), Q value = 0.025

Table S17985.  Gene #1783: 'STK10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
STK10 MUTATED 2 9 0 0 3
STK10 WILD-TYPE 49 67 61 71 92

Figure S4514.  Get High-res Image Gene #1783: 'STK10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'STK10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.38

Table S17986.  Gene #1783: 'STK10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
STK10 MUTATED 5 2 0 3 1 0 1 1 1
STK10 WILD-TYPE 64 46 39 13 52 20 20 37 49
'TLR9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S17987.  Gene #1784: 'TLR9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TLR9 MUTATED 2 0 1 2 0
TLR9 WILD-TYPE 30 18 45 25 23
'TLR9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S17988.  Gene #1784: 'TLR9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TLR9 MUTATED 2 2 1
TLR9 WILD-TYPE 41 65 35
'TLR9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00084 (Fisher's exact test), Q value = 0.022

Table S17989.  Gene #1784: 'TLR9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TLR9 MUTATED 1 0 10
TLR9 WILD-TYPE 41 173 137

Figure S4515.  Get High-res Image Gene #1784: 'TLR9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TLR9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0775 (Fisher's exact test), Q value = 0.3

Table S17990.  Gene #1784: 'TLR9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TLR9 MUTATED 4 0 2
TLR9 WILD-TYPE 58 73 73
'TLR9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.44

Table S17991.  Gene #1784: 'TLR9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TLR9 MUTATED 2 1 5
TLR9 WILD-TYPE 68 119 95
'TLR9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S17992.  Gene #1784: 'TLR9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TLR9 MUTATED 0 0 1 0 2 4 1 0 0
TLR9 WILD-TYPE 41 26 29 29 37 65 19 14 22
'TLR9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S17993.  Gene #1784: 'TLR9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TLR9 MUTATED 0 1 5 5
TLR9 WILD-TYPE 100 71 67 116

Figure S4516.  Get High-res Image Gene #1784: 'TLR9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TLR9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S17994.  Gene #1784: 'TLR9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TLR9 MUTATED 0 1 5 3 2
TLR9 WILD-TYPE 59 74 69 116 36
'TLR9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S17995.  Gene #1784: 'TLR9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TLR9 MUTATED 0 4 2 1 4
TLR9 WILD-TYPE 51 72 59 70 91
'TLR9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.77

Table S17996.  Gene #1784: 'TLR9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TLR9 MUTATED 2 3 0 1 1 2 0 1 1
TLR9 WILD-TYPE 67 45 39 15 52 18 21 37 49
'TLR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S17997.  Gene #1784: 'TLR9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TLR9 MUTATED 0 0 1 0 2 0
TLR9 WILD-TYPE 13 16 13 11 9 9
'TLR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0494 (Fisher's exact test), Q value = 0.24

Table S17998.  Gene #1784: 'TLR9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TLR9 MUTATED 0 0 0 0 1 2 0 0 0
TLR9 WILD-TYPE 11 7 7 9 7 5 11 9 5

Figure S4517.  Get High-res Image Gene #1784: 'TLR9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'VWA3A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S17999.  Gene #1785: 'VWA3A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
VWA3A MUTATED 3 0 0 1 1
VWA3A WILD-TYPE 29 18 46 26 22
'VWA3A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0521 (Fisher's exact test), Q value = 0.24

Table S18000.  Gene #1785: 'VWA3A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
VWA3A MUTATED 3 0 2
VWA3A WILD-TYPE 40 67 34
'VWA3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 0.17

Table S18001.  Gene #1785: 'VWA3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
VWA3A MUTATED 0 2 9
VWA3A WILD-TYPE 42 171 138

Figure S4518.  Get High-res Image Gene #1785: 'VWA3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'VWA3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00834 (Fisher's exact test), Q value = 0.086

Table S18002.  Gene #1785: 'VWA3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
VWA3A MUTATED 5 1 0
VWA3A WILD-TYPE 57 72 75

Figure S4519.  Get High-res Image Gene #1785: 'VWA3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'VWA3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0753 (Fisher's exact test), Q value = 0.3

Table S18003.  Gene #1785: 'VWA3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
VWA3A MUTATED 1 1 6
VWA3A WILD-TYPE 69 119 94
'VWA3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.79

Table S18004.  Gene #1785: 'VWA3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
VWA3A MUTATED 1 1 0 0 0 5 0 0 1
VWA3A WILD-TYPE 40 25 30 29 39 64 20 14 21
'VWA3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.77

Table S18005.  Gene #1785: 'VWA3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
VWA3A MUTATED 1 2 2 6
VWA3A WILD-TYPE 99 70 70 115
'VWA3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0869 (Fisher's exact test), Q value = 0.32

Table S18006.  Gene #1785: 'VWA3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
VWA3A MUTATED 1 0 4 3 3
VWA3A WILD-TYPE 58 75 70 116 35
'VWA3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.87

Table S18007.  Gene #1785: 'VWA3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
VWA3A MUTATED 0 4 2 2 2
VWA3A WILD-TYPE 51 72 59 69 93
'VWA3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S18008.  Gene #1785: 'VWA3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
VWA3A MUTATED 4 1 0 0 1 0 1 1 2
VWA3A WILD-TYPE 65 47 39 16 52 20 20 37 48
'S1PR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0699 (Fisher's exact test), Q value = 0.29

Table S18009.  Gene #1786: 'S1PR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
S1PR1 MUTATED 3 0 0 0 1
S1PR1 WILD-TYPE 29 18 46 27 22
'S1PR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.052 (Fisher's exact test), Q value = 0.24

Table S18010.  Gene #1786: 'S1PR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
S1PR1 MUTATED 3 0 1
S1PR1 WILD-TYPE 40 67 35
'S1PR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.69

Table S18011.  Gene #1786: 'S1PR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
S1PR1 MUTATED 2 3 6
S1PR1 WILD-TYPE 40 170 141
'S1PR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18012.  Gene #1786: 'S1PR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
S1PR1 MUTATED 2 2 3
S1PR1 WILD-TYPE 60 71 72
'S1PR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.53

Table S18013.  Gene #1786: 'S1PR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
S1PR1 MUTATED 3 1 4
S1PR1 WILD-TYPE 67 119 96
'S1PR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S18014.  Gene #1786: 'S1PR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
S1PR1 MUTATED 0 1 0 0 2 2 1 1 1
S1PR1 WILD-TYPE 41 25 30 29 37 67 19 13 21
'S1PR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S18015.  Gene #1786: 'S1PR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
S1PR1 MUTATED 4 1 2 4
S1PR1 WILD-TYPE 96 71 70 117
'S1PR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S18016.  Gene #1786: 'S1PR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
S1PR1 MUTATED 1 3 3 1 3
S1PR1 WILD-TYPE 58 72 71 118 35
'S1PR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.63

Table S18017.  Gene #1786: 'S1PR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
S1PR1 MUTATED 1 2 2 5 1
S1PR1 WILD-TYPE 50 74 59 66 94
'S1PR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S18018.  Gene #1786: 'S1PR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
S1PR1 MUTATED 1 2 1 0 2 1 0 2 2
S1PR1 WILD-TYPE 68 46 38 16 51 19 21 36 48
'RAPGEF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.17

Table S18019.  Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RAPGEF2 MUTATED 4 0 0 2 0
RAPGEF2 WILD-TYPE 28 18 46 25 23

Figure S4520.  Get High-res Image Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RAPGEF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.37

Table S18020.  Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RAPGEF2 MUTATED 4 1 1
RAPGEF2 WILD-TYPE 39 66 35
'RAPGEF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S18021.  Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RAPGEF2 MUTATED 0 0 21
RAPGEF2 WILD-TYPE 42 173 126

Figure S4521.  Get High-res Image Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAPGEF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 0.24

Table S18022.  Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RAPGEF2 MUTATED 5 1 8
RAPGEF2 WILD-TYPE 57 72 67

Figure S4522.  Get High-res Image Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'RAPGEF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.34

Table S18023.  Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RAPGEF2 MUTATED 4 3 9
RAPGEF2 WILD-TYPE 66 117 91
'RAPGEF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 0.92

Table S18024.  Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RAPGEF2 MUTATED 2 1 1 1 2 8 0 1 0
RAPGEF2 WILD-TYPE 39 25 29 28 37 61 20 13 22
'RAPGEF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00128 (Fisher's exact test), Q value = 0.029

Table S18025.  Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RAPGEF2 MUTATED 0 8 7 6
RAPGEF2 WILD-TYPE 100 64 65 115

Figure S4523.  Get High-res Image Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RAPGEF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0075

Table S18026.  Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RAPGEF2 MUTATED 1 2 12 2 4
RAPGEF2 WILD-TYPE 58 73 62 117 34

Figure S4524.  Get High-res Image Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RAPGEF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0741 (Fisher's exact test), Q value = 0.3

Table S18027.  Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RAPGEF2 MUTATED 0 9 4 3 5
RAPGEF2 WILD-TYPE 51 67 57 68 90
'RAPGEF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S18028.  Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RAPGEF2 MUTATED 5 5 0 2 1 2 2 3 1
RAPGEF2 WILD-TYPE 64 43 39 14 52 18 19 35 49
'RAPGEF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S18029.  Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RAPGEF2 MUTATED 0 1 2 0 3 0
RAPGEF2 WILD-TYPE 13 15 12 11 8 9
'RAPGEF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S18030.  Gene #1787: 'RAPGEF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RAPGEF2 MUTATED 0 0 0 0 1 1 3 0 1
RAPGEF2 WILD-TYPE 11 7 7 9 7 6 8 9 4
'SFRS2IP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S18031.  Gene #1788: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SFRS2IP MUTATED 4 0 2 1 0
SFRS2IP WILD-TYPE 28 18 44 26 23
'SFRS2IP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S18032.  Gene #1788: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SFRS2IP MUTATED 3 3 1
SFRS2IP WILD-TYPE 40 64 35
'SFRS2IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00069 (Fisher's exact test), Q value = 0.02

Table S18033.  Gene #1788: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SFRS2IP MUTATED 1 5 20
SFRS2IP WILD-TYPE 41 168 127

Figure S4525.  Get High-res Image Gene #1788: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SFRS2IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.63

Table S18034.  Gene #1788: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SFRS2IP MUTATED 8 4 6
SFRS2IP WILD-TYPE 54 69 69
'SFRS2IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.98

Table S18035.  Gene #1788: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SFRS2IP MUTATED 5 7 9
SFRS2IP WILD-TYPE 65 113 91
'SFRS2IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S18036.  Gene #1788: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SFRS2IP MUTATED 3 2 2 2 2 6 3 1 0
SFRS2IP WILD-TYPE 38 24 28 27 37 63 17 13 22
'SFRS2IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S18037.  Gene #1788: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SFRS2IP MUTATED 4 9 6 7
SFRS2IP WILD-TYPE 96 63 66 114
'SFRS2IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.36

Table S18038.  Gene #1788: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SFRS2IP MUTATED 4 3 11 6 2
SFRS2IP WILD-TYPE 55 72 63 113 36
'SFRS2IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 0.24

Table S18039.  Gene #1788: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SFRS2IP MUTATED 1 11 4 2 7
SFRS2IP WILD-TYPE 50 65 57 69 88

Figure S4526.  Get High-res Image Gene #1788: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SFRS2IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.47

Table S18040.  Gene #1788: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SFRS2IP MUTATED 3 4 2 4 3 3 2 1 3
SFRS2IP WILD-TYPE 66 44 37 12 50 17 19 37 47
'SFRS2IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S18041.  Gene #1788: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SFRS2IP MUTATED 0 1 1 0 2 1
SFRS2IP WILD-TYPE 13 15 13 11 9 8
'SFRS2IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 0.85

Table S18042.  Gene #1788: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SFRS2IP MUTATED 1 0 0 2 0 0 2 0 0
SFRS2IP WILD-TYPE 10 7 7 7 8 7 9 9 5
'LUZP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S18043.  Gene #1789: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LUZP1 MUTATED 0 1 1 2 0
LUZP1 WILD-TYPE 32 17 45 25 23
'LUZP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 0.98

Table S18044.  Gene #1789: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LUZP1 MUTATED 1 3 0
LUZP1 WILD-TYPE 42 64 36
'LUZP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00544 (Fisher's exact test), Q value = 0.07

Table S18045.  Gene #1789: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LUZP1 MUTATED 1 2 12
LUZP1 WILD-TYPE 41 171 135

Figure S4527.  Get High-res Image Gene #1789: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LUZP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.21

Table S18046.  Gene #1789: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LUZP1 MUTATED 4 0 6
LUZP1 WILD-TYPE 58 73 69

Figure S4528.  Get High-res Image Gene #1789: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LUZP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S18047.  Gene #1789: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LUZP1 MUTATED 3 7 5
LUZP1 WILD-TYPE 67 113 95
'LUZP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S18048.  Gene #1789: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LUZP1 MUTATED 1 3 2 2 1 5 1 0 0
LUZP1 WILD-TYPE 40 23 28 27 38 64 19 14 22
'LUZP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.37

Table S18049.  Gene #1789: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LUZP1 MUTATED 1 6 3 5
LUZP1 WILD-TYPE 99 66 69 116
'LUZP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0946 (Fisher's exact test), Q value = 0.34

Table S18050.  Gene #1789: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LUZP1 MUTATED 0 3 7 4 1
LUZP1 WILD-TYPE 59 72 67 115 37
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.22

Table S18051.  Gene #1789: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LUZP1 MUTATED 1 6 0 1 7
LUZP1 WILD-TYPE 50 70 61 70 88

Figure S4529.  Get High-res Image Gene #1789: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LUZP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S18052.  Gene #1789: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LUZP1 MUTATED 2 2 2 1 1 2 1 1 3
LUZP1 WILD-TYPE 67 46 37 15 52 18 20 37 47
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S18053.  Gene #1789: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LUZP1 MUTATED 0 0 1 0 2 0
LUZP1 WILD-TYPE 13 16 13 11 9 9
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S18054.  Gene #1789: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LUZP1 MUTATED 0 0 0 1 0 1 1 0 0
LUZP1 WILD-TYPE 11 7 7 8 8 6 10 9 5
'NDUFB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0933 (Fisher's exact test), Q value = 0.33

Table S18055.  Gene #1790: 'NDUFB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NDUFB2 MUTATED 1 0 2
NDUFB2 WILD-TYPE 41 173 145
'NDUFB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S18056.  Gene #1790: 'NDUFB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NDUFB2 MUTATED 0 2 1
NDUFB2 WILD-TYPE 70 118 99
'NDUFB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S18057.  Gene #1790: 'NDUFB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NDUFB2 MUTATED 0 0 0 1 1 1 0 0 0
NDUFB2 WILD-TYPE 41 26 30 28 38 68 20 14 22
'NDUFB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18058.  Gene #1790: 'NDUFB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NDUFB2 MUTATED 1 1 0 1
NDUFB2 WILD-TYPE 99 71 72 120
'NDUFB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.63

Table S18059.  Gene #1790: 'NDUFB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NDUFB2 MUTATED 0 1 1 0 1
NDUFB2 WILD-TYPE 59 74 73 119 37
'NDUFB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S18060.  Gene #1790: 'NDUFB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NDUFB2 MUTATED 0 2 0 0 1
NDUFB2 WILD-TYPE 51 74 61 71 94
'NDUFB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S18061.  Gene #1790: 'NDUFB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NDUFB2 MUTATED 1 0 0 1 1 0 0 0 0
NDUFB2 WILD-TYPE 68 48 39 15 52 20 21 38 50
'LRRFIP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 0.95

Table S18062.  Gene #1791: 'LRRFIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LRRFIP1 MUTATED 1 0 1 2 0
LRRFIP1 WILD-TYPE 31 18 45 25 23
'LRRFIP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S18063.  Gene #1791: 'LRRFIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LRRFIP1 MUTATED 2 2 0
LRRFIP1 WILD-TYPE 41 65 36
'LRRFIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.07 (Fisher's exact test), Q value = 0.29

Table S18064.  Gene #1791: 'LRRFIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LRRFIP1 MUTATED 0 3 9
LRRFIP1 WILD-TYPE 42 170 138
'LRRFIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0689 (Fisher's exact test), Q value = 0.28

Table S18065.  Gene #1791: 'LRRFIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LRRFIP1 MUTATED 3 0 5
LRRFIP1 WILD-TYPE 59 73 70
'LRRFIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.61

Table S18066.  Gene #1791: 'LRRFIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LRRFIP1 MUTATED 1 3 6
LRRFIP1 WILD-TYPE 69 117 94
'LRRFIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S18067.  Gene #1791: 'LRRFIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LRRFIP1 MUTATED 0 0 1 2 1 5 0 0 1
LRRFIP1 WILD-TYPE 41 26 29 27 38 64 20 14 21
'LRRFIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.93

Table S18068.  Gene #1791: 'LRRFIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LRRFIP1 MUTATED 2 4 2 4
LRRFIP1 WILD-TYPE 98 68 70 117
'LRRFIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S18069.  Gene #1791: 'LRRFIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LRRFIP1 MUTATED 2 2 4 2 2
LRRFIP1 WILD-TYPE 57 73 70 117 36
'LRRFIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S18070.  Gene #1791: 'LRRFIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LRRFIP1 MUTATED 1 5 1 0 4
LRRFIP1 WILD-TYPE 50 71 60 71 91
'LRRFIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S18071.  Gene #1791: 'LRRFIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LRRFIP1 MUTATED 2 2 1 1 2 1 0 1 1
LRRFIP1 WILD-TYPE 67 46 38 15 51 19 21 37 49
'PTPRN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0996 (Fisher's exact test), Q value = 0.34

Table S18072.  Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PTPRN MUTATED 3 0 0 1 0
PTPRN WILD-TYPE 29 18 46 26 23
'PTPRN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S18073.  Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PTPRN MUTATED 3 1 0
PTPRN WILD-TYPE 40 66 36
'PTPRN MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0048

Table S18074.  Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PTPRN MUTATED 1 0 13
PTPRN WILD-TYPE 41 173 134

Figure S4530.  Get High-res Image Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPRN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.21

Table S18075.  Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PTPRN MUTATED 5 0 4
PTPRN WILD-TYPE 57 73 71

Figure S4531.  Get High-res Image Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PTPRN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.72

Table S18076.  Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PTPRN MUTATED 1 7 4
PTPRN WILD-TYPE 69 113 96
'PTPRN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S18077.  Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PTPRN MUTATED 1 2 2 2 0 3 1 0 1
PTPRN WILD-TYPE 40 24 28 27 39 66 19 14 21
'PTPRN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.21

Table S18078.  Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PTPRN MUTATED 0 5 3 6
PTPRN WILD-TYPE 100 67 69 115

Figure S4532.  Get High-res Image Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTPRN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 0.14

Table S18079.  Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PTPRN MUTATED 1 1 6 2 4
PTPRN WILD-TYPE 58 74 68 117 34

Figure S4533.  Get High-res Image Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPRN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.078 (Fisher's exact test), Q value = 0.3

Table S18080.  Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PTPRN MUTATED 0 6 1 1 6
PTPRN WILD-TYPE 51 70 60 70 89
'PTPRN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0023 (Fisher's exact test), Q value = 0.041

Table S18081.  Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PTPRN MUTATED 2 1 0 4 0 1 0 4 2
PTPRN WILD-TYPE 67 47 39 12 53 19 21 34 48

Figure S4534.  Get High-res Image Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTPRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.17

Table S18082.  Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PTPRN MUTATED 0 0 1 0 3 0
PTPRN WILD-TYPE 13 16 13 11 8 9

Figure S4535.  Get High-res Image Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PTPRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S18083.  Gene #1792: 'PTPRN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PTPRN MUTATED 0 0 0 1 1 1 1 0 0
PTPRN WILD-TYPE 11 7 7 8 7 6 10 9 5
'AVPR1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0065

Table S18084.  Gene #1793: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AVPR1A MUTATED 0 0 11
AVPR1A WILD-TYPE 42 173 136

Figure S4536.  Get High-res Image Gene #1793: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AVPR1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 0.3

Table S18085.  Gene #1793: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AVPR1A MUTATED 4 0 4
AVPR1A WILD-TYPE 58 73 71
'AVPR1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.92

Table S18086.  Gene #1793: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AVPR1A MUTATED 2 3 5
AVPR1A WILD-TYPE 68 117 95
'AVPR1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S18087.  Gene #1793: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AVPR1A MUTATED 1 0 2 1 2 3 1 0 0
AVPR1A WILD-TYPE 40 26 28 28 37 66 19 14 22
'AVPR1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0504 (Fisher's exact test), Q value = 0.24

Table S18088.  Gene #1793: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AVPR1A MUTATED 0 4 4 3
AVPR1A WILD-TYPE 100 68 68 118
'AVPR1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.035 (Fisher's exact test), Q value = 0.2

Table S18089.  Gene #1793: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AVPR1A MUTATED 1 1 6 1 2
AVPR1A WILD-TYPE 58 74 68 118 36

Figure S4537.  Get High-res Image Gene #1793: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AVPR1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.1

Table S18090.  Gene #1793: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AVPR1A MUTATED 0 7 1 0 3
AVPR1A WILD-TYPE 51 69 60 71 92

Figure S4538.  Get High-res Image Gene #1793: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'AVPR1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.72

Table S18091.  Gene #1793: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AVPR1A MUTATED 3 3 0 1 1 1 0 2 0
AVPR1A WILD-TYPE 66 45 39 15 52 19 21 36 50
'KCNC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S18092.  Gene #1794: 'KCNC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KCNC4 MUTATED 0 2 6
KCNC4 WILD-TYPE 42 171 141
'KCNC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0777 (Fisher's exact test), Q value = 0.3

Table S18093.  Gene #1794: 'KCNC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KCNC4 MUTATED 4 0 2
KCNC4 WILD-TYPE 58 73 73
'KCNC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S18094.  Gene #1794: 'KCNC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KCNC4 MUTATED 1 1 5
KCNC4 WILD-TYPE 69 119 95
'KCNC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.38

Table S18095.  Gene #1794: 'KCNC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KCNC4 MUTATED 0 0 0 0 0 5 1 1 0
KCNC4 WILD-TYPE 41 26 30 29 39 64 19 13 22
'KCNC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S18096.  Gene #1794: 'KCNC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KCNC4 MUTATED 1 3 2 2
KCNC4 WILD-TYPE 99 69 70 119
'KCNC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00915 (Fisher's exact test), Q value = 0.09

Table S18097.  Gene #1794: 'KCNC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KCNC4 MUTATED 2 0 4 0 2
KCNC4 WILD-TYPE 57 75 70 119 36

Figure S4539.  Get High-res Image Gene #1794: 'KCNC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KCNC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S18098.  Gene #1794: 'KCNC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KCNC4 MUTATED 0 4 2 0 2
KCNC4 WILD-TYPE 51 72 59 71 93
'KCNC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.21

Table S18099.  Gene #1794: 'KCNC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KCNC4 MUTATED 1 0 1 2 1 2 0 1 0
KCNC4 WILD-TYPE 68 48 38 14 52 18 21 37 50

Figure S4540.  Get High-res Image Gene #1794: 'KCNC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KCNC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S18100.  Gene #1794: 'KCNC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KCNC4 MUTATED 0 1 0 2 0 0
KCNC4 WILD-TYPE 13 15 14 9 11 9
'KCNC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S18101.  Gene #1794: 'KCNC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KCNC4 MUTATED 1 0 0 0 0 1 1 0 0
KCNC4 WILD-TYPE 10 7 7 9 8 6 10 9 5
'RPAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.1

Table S18102.  Gene #1795: 'RPAP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RPAP2 MUTATED 0 0 6
RPAP2 WILD-TYPE 42 173 141

Figure S4541.  Get High-res Image Gene #1795: 'RPAP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RPAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.51

Table S18103.  Gene #1795: 'RPAP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RPAP2 MUTATED 1 0 3
RPAP2 WILD-TYPE 61 73 72
'RPAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S18104.  Gene #1795: 'RPAP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RPAP2 MUTATED 0 1 4
RPAP2 WILD-TYPE 70 119 96
'RPAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.8

Table S18105.  Gene #1795: 'RPAP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RPAP2 MUTATED 0 0 1 0 0 4 0 0 0
RPAP2 WILD-TYPE 41 26 29 29 39 65 20 14 22
'RPAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.16

Table S18106.  Gene #1795: 'RPAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RPAP2 MUTATED 0 4 0 2
RPAP2 WILD-TYPE 100 68 72 119

Figure S4542.  Get High-res Image Gene #1795: 'RPAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RPAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S18107.  Gene #1795: 'RPAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RPAP2 MUTATED 0 1 3 2 0
RPAP2 WILD-TYPE 59 74 71 117 38
'RPAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.46

Table S18108.  Gene #1795: 'RPAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RPAP2 MUTATED 0 3 0 0 3
RPAP2 WILD-TYPE 51 73 61 71 92
'RPAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-04 (Fisher's exact test), Q value = 0.014

Table S18109.  Gene #1795: 'RPAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RPAP2 MUTATED 0 0 0 3 0 1 1 0 1
RPAP2 WILD-TYPE 69 48 39 13 53 19 20 38 49

Figure S4543.  Get High-res Image Gene #1795: 'RPAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DDX24 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S18110.  Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DDX24 MUTATED 1 0 0 2 0
DDX24 WILD-TYPE 31 18 46 25 23
'DDX24 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S18111.  Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DDX24 MUTATED 1 2 0
DDX24 WILD-TYPE 42 65 36
'DDX24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00555 (Fisher's exact test), Q value = 0.07

Table S18112.  Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DDX24 MUTATED 2 1 10
DDX24 WILD-TYPE 40 172 137

Figure S4544.  Get High-res Image Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DDX24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.2

Table S18113.  Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DDX24 MUTATED 5 0 5
DDX24 WILD-TYPE 57 73 70

Figure S4545.  Get High-res Image Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DDX24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.51

Table S18114.  Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DDX24 MUTATED 1 5 7
DDX24 WILD-TYPE 69 115 93
'DDX24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.69

Table S18115.  Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DDX24 MUTATED 1 0 2 1 1 5 3 0 0
DDX24 WILD-TYPE 40 26 28 28 38 64 17 14 22
'DDX24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S18116.  Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DDX24 MUTATED 2 4 5 2
DDX24 WILD-TYPE 98 68 67 119
'DDX24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 0.13

Table S18117.  Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DDX24 MUTATED 1 1 8 2 1
DDX24 WILD-TYPE 58 74 66 117 37

Figure S4546.  Get High-res Image Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DDX24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.1

Table S18118.  Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DDX24 MUTATED 1 8 1 1 1
DDX24 WILD-TYPE 50 68 60 70 94

Figure S4547.  Get High-res Image Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DDX24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S18119.  Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DDX24 MUTATED 1 3 1 3 2 2 0 0 0
DDX24 WILD-TYPE 68 45 38 13 51 18 21 38 50

Figure S4548.  Get High-res Image Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DDX24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.16

Table S18120.  Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DDX24 MUTATED 0 0 1 0 3 0
DDX24 WILD-TYPE 13 16 13 11 8 9

Figure S4549.  Get High-res Image Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DDX24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S18121.  Gene #1796: 'DDX24 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DDX24 MUTATED 0 0 0 0 1 0 3 0 0
DDX24 WILD-TYPE 11 7 7 9 7 7 8 9 5
'CUL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0015 (Fisher's exact test), Q value = 0.032

Table S18122.  Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CUL1 MUTATED 6 0 0 1 0
CUL1 WILD-TYPE 26 18 46 26 23

Figure S4550.  Get High-res Image Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CUL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00506 (Fisher's exact test), Q value = 0.067

Table S18123.  Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CUL1 MUTATED 6 1 0
CUL1 WILD-TYPE 37 66 36

Figure S4551.  Get High-res Image Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CUL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00278 (Fisher's exact test), Q value = 0.045

Table S18124.  Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CUL1 MUTATED 0 2 12
CUL1 WILD-TYPE 42 171 135

Figure S4552.  Get High-res Image Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CUL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 0.3

Table S18125.  Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CUL1 MUTATED 4 0 4
CUL1 WILD-TYPE 58 73 71
'CUL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.91

Table S18126.  Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CUL1 MUTATED 2 4 6
CUL1 WILD-TYPE 68 116 94
'CUL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.81

Table S18127.  Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CUL1 MUTATED 1 0 1 1 2 4 3 0 0
CUL1 WILD-TYPE 40 26 29 28 37 65 17 14 22
'CUL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S18128.  Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CUL1 MUTATED 1 4 4 6
CUL1 WILD-TYPE 99 68 68 115
'CUL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0065

Table S18129.  Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CUL1 MUTATED 2 0 6 1 6
CUL1 WILD-TYPE 57 75 68 118 32

Figure S4553.  Get High-res Image Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CUL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0927 (Fisher's exact test), Q value = 0.33

Table S18130.  Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CUL1 MUTATED 1 5 2 0 7
CUL1 WILD-TYPE 50 71 59 71 88
'CUL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00636 (Fisher's exact test), Q value = 0.075

Table S18131.  Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CUL1 MUTATED 1 2 0 3 2 1 1 5 0
CUL1 WILD-TYPE 68 46 39 13 51 19 20 33 50

Figure S4554.  Get High-res Image Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CUL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.19

Table S18132.  Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CUL1 MUTATED 0 1 0 0 3 0
CUL1 WILD-TYPE 13 15 14 11 8 9

Figure S4555.  Get High-res Image Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CUL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S18133.  Gene #1797: 'CUL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CUL1 MUTATED 0 1 0 1 1 0 1 0 0
CUL1 WILD-TYPE 11 6 7 8 7 7 10 9 5
'FOXF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0933 (Fisher's exact test), Q value = 0.33

Table S18134.  Gene #1798: 'FOXF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FOXF2 MUTATED 1 0 3
FOXF2 WILD-TYPE 41 173 144
'FOXF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S18135.  Gene #1798: 'FOXF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FOXF2 MUTATED 1 0 2
FOXF2 WILD-TYPE 61 73 73
'FOXF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18136.  Gene #1798: 'FOXF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FOXF2 MUTATED 1 1 1
FOXF2 WILD-TYPE 69 119 99
'FOXF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S18137.  Gene #1798: 'FOXF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FOXF2 MUTATED 0 0 0 1 1 1 0 0 0
FOXF2 WILD-TYPE 41 26 30 28 38 68 20 14 22
'FOXF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S18138.  Gene #1798: 'FOXF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FOXF2 MUTATED 0 2 1 1
FOXF2 WILD-TYPE 100 70 71 120
'FOXF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S18139.  Gene #1798: 'FOXF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FOXF2 MUTATED 0 0 3 1 0
FOXF2 WILD-TYPE 59 75 71 118 38
'FOXF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S18140.  Gene #1798: 'FOXF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FOXF2 MUTATED 0 2 0 1 1
FOXF2 WILD-TYPE 51 74 61 70 94
'FOXF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.64

Table S18141.  Gene #1798: 'FOXF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FOXF2 MUTATED 0 1 0 1 1 0 0 1 0
FOXF2 WILD-TYPE 69 47 39 15 52 20 21 37 50
'CNKSR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S18142.  Gene #1799: 'CNKSR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CNKSR3 MUTATED 3 3 3
CNKSR3 WILD-TYPE 39 170 144
'CNKSR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S18143.  Gene #1799: 'CNKSR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CNKSR3 MUTATED 0 2 5
CNKSR3 WILD-TYPE 62 71 70
'CNKSR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S18144.  Gene #1799: 'CNKSR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CNKSR3 MUTATED 0 4 2
CNKSR3 WILD-TYPE 70 116 98
'CNKSR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.87

Table S18145.  Gene #1799: 'CNKSR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CNKSR3 MUTATED 0 1 1 2 0 2 0 0 0
CNKSR3 WILD-TYPE 41 25 29 27 39 67 20 14 22
'CNKSR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.59

Table S18146.  Gene #1799: 'CNKSR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CNKSR3 MUTATED 1 4 2 2
CNKSR3 WILD-TYPE 99 68 70 119
'CNKSR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 0.83

Table S18147.  Gene #1799: 'CNKSR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CNKSR3 MUTATED 1 2 4 2 0
CNKSR3 WILD-TYPE 58 73 70 117 38
'CNKSR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.41

Table S18148.  Gene #1799: 'CNKSR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CNKSR3 MUTATED 0 5 2 1 1
CNKSR3 WILD-TYPE 51 71 59 70 94
'CNKSR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 0.97

Table S18149.  Gene #1799: 'CNKSR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CNKSR3 MUTATED 2 1 1 2 1 0 0 1 1
CNKSR3 WILD-TYPE 67 47 38 14 52 20 21 37 49
'CNKSR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S18150.  Gene #1799: 'CNKSR3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CNKSR3 MUTATED 2 0 1 0 1 1
CNKSR3 WILD-TYPE 11 16 13 11 10 8
'CNKSR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S18151.  Gene #1799: 'CNKSR3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CNKSR3 MUTATED 1 0 0 2 0 0 1 1 0
CNKSR3 WILD-TYPE 10 7 7 7 8 7 10 8 5
'C1ORF116 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S18152.  Gene #1800: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C1ORF116 MUTATED 0 2 4
C1ORF116 WILD-TYPE 42 171 143
'C1ORF116 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S18153.  Gene #1800: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C1ORF116 MUTATED 2 1 1
C1ORF116 WILD-TYPE 60 72 74
'C1ORF116 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S18154.  Gene #1800: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C1ORF116 MUTATED 1 2 3
C1ORF116 WILD-TYPE 69 118 97
'C1ORF116 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.996 (Fisher's exact test), Q value = 1

Table S18155.  Gene #1800: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C1ORF116 MUTATED 1 1 1 0 1 2 0 0 0
C1ORF116 WILD-TYPE 40 25 29 29 38 67 20 14 22
'C1ORF116 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S18156.  Gene #1800: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C1ORF116 MUTATED 1 2 1 2
C1ORF116 WILD-TYPE 99 70 71 119
'C1ORF116 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S18157.  Gene #1800: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C1ORF116 MUTATED 1 2 1 1 1
C1ORF116 WILD-TYPE 58 73 73 118 37
'C1ORF116 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.98

Table S18158.  Gene #1800: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C1ORF116 MUTATED 0 2 1 0 2
C1ORF116 WILD-TYPE 51 74 60 71 93
'C1ORF116 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 0.96

Table S18159.  Gene #1800: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C1ORF116 MUTATED 1 1 0 1 0 0 0 1 1
C1ORF116 WILD-TYPE 68 47 39 15 53 20 21 37 49
'DENND2C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.044 (Fisher's exact test), Q value = 0.22

Table S18160.  Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DENND2C MUTATED 4 1 0 2 0
DENND2C WILD-TYPE 28 17 46 25 23

Figure S4556.  Get High-res Image Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'DENND2C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S18161.  Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DENND2C MUTATED 4 2 1
DENND2C WILD-TYPE 39 65 35
'DENND2C MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S18162.  Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DENND2C MUTATED 3 0 15
DENND2C WILD-TYPE 39 173 132

Figure S4557.  Get High-res Image Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DENND2C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 0.21

Table S18163.  Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DENND2C MUTATED 4 0 6
DENND2C WILD-TYPE 58 73 69

Figure S4558.  Get High-res Image Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'DENND2C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S18164.  Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DENND2C MUTATED 3 6 7
DENND2C WILD-TYPE 67 114 93
'DENND2C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S18165.  Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DENND2C MUTATED 3 1 2 1 3 4 2 0 0
DENND2C WILD-TYPE 38 25 28 28 36 65 18 14 22
'DENND2C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.13

Table S18166.  Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DENND2C MUTATED 1 8 2 7
DENND2C WILD-TYPE 99 64 70 114

Figure S4559.  Get High-res Image Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DENND2C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S18167.  Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DENND2C MUTATED 1 2 6 5 4
DENND2C WILD-TYPE 58 73 68 114 34
'DENND2C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 0.26

Table S18168.  Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DENND2C MUTATED 0 4 2 2 10
DENND2C WILD-TYPE 51 72 59 69 85
'DENND2C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0275 (Fisher's exact test), Q value = 0.17

Table S18169.  Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DENND2C MUTATED 1 2 0 2 4 1 1 6 1
DENND2C WILD-TYPE 68 46 39 14 49 19 20 32 49

Figure S4560.  Get High-res Image Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DENND2C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.39

Table S18170.  Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
DENND2C MUTATED 1 0 0 0 2 0
DENND2C WILD-TYPE 12 16 14 11 9 9
'DENND2C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S18171.  Gene #1801: 'DENND2C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
DENND2C MUTATED 0 0 0 1 0 0 1 1 0
DENND2C WILD-TYPE 11 7 7 8 8 7 10 8 5
'ITGA9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S18172.  Gene #1802: 'ITGA9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ITGA9 MUTATED 3 0 1 0 0
ITGA9 WILD-TYPE 29 18 45 27 23
'ITGA9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S18173.  Gene #1802: 'ITGA9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ITGA9 MUTATED 2 1 1
ITGA9 WILD-TYPE 41 66 35
'ITGA9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.043 (Fisher's exact test), Q value = 0.22

Table S18174.  Gene #1802: 'ITGA9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ITGA9 MUTATED 2 1 6
ITGA9 WILD-TYPE 40 172 141

Figure S4561.  Get High-res Image Gene #1802: 'ITGA9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ITGA9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S18175.  Gene #1802: 'ITGA9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ITGA9 MUTATED 2 2 1
ITGA9 WILD-TYPE 60 71 74
'ITGA9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S18176.  Gene #1802: 'ITGA9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ITGA9 MUTATED 1 3 3
ITGA9 WILD-TYPE 69 117 97
'ITGA9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S18177.  Gene #1802: 'ITGA9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ITGA9 MUTATED 1 0 0 0 1 1 1 2 1
ITGA9 WILD-TYPE 40 26 30 29 38 68 19 12 21
'ITGA9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S18178.  Gene #1802: 'ITGA9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ITGA9 MUTATED 2 1 3 3
ITGA9 WILD-TYPE 98 71 69 118
'ITGA9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.92

Table S18179.  Gene #1802: 'ITGA9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ITGA9 MUTATED 2 1 2 2 2
ITGA9 WILD-TYPE 57 74 72 117 36
'ITGA9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S18180.  Gene #1802: 'ITGA9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ITGA9 MUTATED 1 1 3 2 2
ITGA9 WILD-TYPE 50 75 58 69 93
'ITGA9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S18181.  Gene #1802: 'ITGA9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ITGA9 MUTATED 1 3 1 0 1 1 0 2 0
ITGA9 WILD-TYPE 68 45 38 16 52 19 21 36 50
'ITGA9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S18182.  Gene #1802: 'ITGA9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ITGA9 MUTATED 0 1 1 0 1 0
ITGA9 WILD-TYPE 13 15 13 11 10 9
'ITGA9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.99

Table S18183.  Gene #1802: 'ITGA9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ITGA9 MUTATED 0 0 0 0 1 1 1 0 0
ITGA9 WILD-TYPE 11 7 7 9 7 6 10 9 5
'COPB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.59

Table S18184.  Gene #1803: 'COPB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
COPB2 MUTATED 1 0 0 2 1
COPB2 WILD-TYPE 31 18 46 25 22
'COPB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S18185.  Gene #1803: 'COPB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
COPB2 MUTATED 2 1 1
COPB2 WILD-TYPE 41 66 35
'COPB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.92

Table S18186.  Gene #1803: 'COPB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
COPB2 MUTATED 1 5 7
COPB2 WILD-TYPE 41 168 140
'COPB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S18187.  Gene #1803: 'COPB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
COPB2 MUTATED 2 3 4
COPB2 WILD-TYPE 60 70 71
'COPB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.56

Table S18188.  Gene #1803: 'COPB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
COPB2 MUTATED 2 3 7
COPB2 WILD-TYPE 68 117 93
'COPB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S18189.  Gene #1803: 'COPB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
COPB2 MUTATED 1 0 1 1 1 6 0 1 1
COPB2 WILD-TYPE 40 26 29 28 38 63 20 13 21
'COPB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.76

Table S18190.  Gene #1803: 'COPB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
COPB2 MUTATED 2 5 2 4
COPB2 WILD-TYPE 98 67 70 117
'COPB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S18191.  Gene #1803: 'COPB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
COPB2 MUTATED 3 1 5 2 2
COPB2 WILD-TYPE 56 74 69 117 36
'COPB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S18192.  Gene #1803: 'COPB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
COPB2 MUTATED 3 4 1 1 3
COPB2 WILD-TYPE 48 72 60 70 92
'COPB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00116 (Fisher's exact test), Q value = 0.027

Table S18193.  Gene #1803: 'COPB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
COPB2 MUTATED 1 0 3 4 1 1 0 2 0
COPB2 WILD-TYPE 68 48 36 12 52 19 21 36 50

Figure S4562.  Get High-res Image Gene #1803: 'COPB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COPB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.96

Table S18194.  Gene #1803: 'COPB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
COPB2 MUTATED 0 0 1 1 1 0
COPB2 WILD-TYPE 13 16 13 10 10 9
'COPB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S18195.  Gene #1803: 'COPB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
COPB2 MUTATED 1 0 0 1 0 0 0 1 0
COPB2 WILD-TYPE 10 7 7 8 8 7 11 8 5
'GATAD2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00386 (Fisher's exact test), Q value = 0.055

Table S18196.  Gene #1804: 'GATAD2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GATAD2A MUTATED 1 0 8
GATAD2A WILD-TYPE 41 173 139

Figure S4563.  Get High-res Image Gene #1804: 'GATAD2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GATAD2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.41

Table S18197.  Gene #1804: 'GATAD2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GATAD2A MUTATED 3 0 4
GATAD2A WILD-TYPE 59 73 71
'GATAD2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.84

Table S18198.  Gene #1804: 'GATAD2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GATAD2A MUTATED 3 2 4
GATAD2A WILD-TYPE 67 118 96
'GATAD2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.89

Table S18199.  Gene #1804: 'GATAD2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GATAD2A MUTATED 1 0 2 0 1 3 2 0 0
GATAD2A WILD-TYPE 40 26 28 29 38 66 18 14 22
'GATAD2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.24

Table S18200.  Gene #1804: 'GATAD2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GATAD2A MUTATED 0 4 3 2
GATAD2A WILD-TYPE 100 68 69 119
'GATAD2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.13

Table S18201.  Gene #1804: 'GATAD2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GATAD2A MUTATED 0 1 6 1 1
GATAD2A WILD-TYPE 59 74 68 118 37

Figure S4564.  Get High-res Image Gene #1804: 'GATAD2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GATAD2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0847 (Fisher's exact test), Q value = 0.32

Table S18202.  Gene #1804: 'GATAD2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GATAD2A MUTATED 0 5 1 0 3
GATAD2A WILD-TYPE 51 71 60 71 92
'GATAD2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S18203.  Gene #1804: 'GATAD2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GATAD2A MUTATED 1 2 0 2 0 1 0 2 1
GATAD2A WILD-TYPE 68 46 39 14 53 19 21 36 49
'GATAD2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.75

Table S18204.  Gene #1804: 'GATAD2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GATAD2A MUTATED 0 2 0 0 1 0
GATAD2A WILD-TYPE 13 14 14 11 10 9
'GATAD2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S18205.  Gene #1804: 'GATAD2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GATAD2A MUTATED 1 0 0 0 1 0 1 0 0
GATAD2A WILD-TYPE 10 7 7 9 7 7 10 9 5
'TAOK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S18206.  Gene #1805: 'TAOK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TAOK1 MUTATED 2 0 1 1 0
TAOK1 WILD-TYPE 30 18 45 26 23
'TAOK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S18207.  Gene #1805: 'TAOK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TAOK1 MUTATED 2 2 0
TAOK1 WILD-TYPE 41 65 36
'TAOK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0677 (Fisher's exact test), Q value = 0.28

Table S18208.  Gene #1805: 'TAOK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TAOK1 MUTATED 1 4 11
TAOK1 WILD-TYPE 41 169 136
'TAOK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S18209.  Gene #1805: 'TAOK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TAOK1 MUTATED 4 2 6
TAOK1 WILD-TYPE 58 71 69
'TAOK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18210.  Gene #1805: 'TAOK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TAOK1 MUTATED 3 5 4
TAOK1 WILD-TYPE 67 115 96
'TAOK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S18211.  Gene #1805: 'TAOK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TAOK1 MUTATED 3 1 2 1 2 2 0 0 1
TAOK1 WILD-TYPE 38 25 28 28 37 67 20 14 21
'TAOK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S18212.  Gene #1805: 'TAOK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TAOK1 MUTATED 2 6 2 6
TAOK1 WILD-TYPE 98 66 70 115
'TAOK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.52

Table S18213.  Gene #1805: 'TAOK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TAOK1 MUTATED 1 2 7 4 2
TAOK1 WILD-TYPE 58 73 67 115 36
'TAOK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.8

Table S18214.  Gene #1805: 'TAOK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TAOK1 MUTATED 2 4 2 1 7
TAOK1 WILD-TYPE 49 72 59 70 88
'TAOK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S18215.  Gene #1805: 'TAOK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TAOK1 MUTATED 3 2 1 2 0 2 0 4 2
TAOK1 WILD-TYPE 66 46 38 14 53 18 21 34 48
'KRT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0674 (Fisher's exact test), Q value = 0.28

Table S18216.  Gene #1806: 'KRT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KRT1 MUTATED 0 1 0 2 0
KRT1 WILD-TYPE 32 17 46 25 23
'KRT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S18217.  Gene #1806: 'KRT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KRT1 MUTATED 2 1 0
KRT1 WILD-TYPE 41 66 36
'KRT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 0.19

Table S18218.  Gene #1806: 'KRT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KRT1 MUTATED 0 3 10
KRT1 WILD-TYPE 42 170 137

Figure S4565.  Get High-res Image Gene #1806: 'KRT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KRT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S18219.  Gene #1806: 'KRT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KRT1 MUTATED 4 2 5
KRT1 WILD-TYPE 58 71 70
'KRT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S18220.  Gene #1806: 'KRT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KRT1 MUTATED 2 4 7
KRT1 WILD-TYPE 68 116 93
'KRT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S18221.  Gene #1806: 'KRT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KRT1 MUTATED 3 0 2 0 0 5 2 1 0
KRT1 WILD-TYPE 38 26 28 29 39 64 18 13 22
'KRT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 0.31

Table S18222.  Gene #1806: 'KRT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KRT1 MUTATED 2 4 6 2
KRT1 WILD-TYPE 98 68 66 119
'KRT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0719 (Fisher's exact test), Q value = 0.29

Table S18223.  Gene #1806: 'KRT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KRT1 MUTATED 3 2 6 1 2
KRT1 WILD-TYPE 56 73 68 118 36
'KRT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S18224.  Gene #1806: 'KRT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KRT1 MUTATED 3 4 3 1 2
KRT1 WILD-TYPE 48 72 58 70 93
'KRT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0733 (Fisher's exact test), Q value = 0.29

Table S18225.  Gene #1806: 'KRT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KRT1 MUTATED 1 4 1 1 1 3 1 0 1
KRT1 WILD-TYPE 68 44 38 15 52 17 20 38 49
'KRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S18226.  Gene #1806: 'KRT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KRT1 MUTATED 2 0 2 0 2 0
KRT1 WILD-TYPE 11 16 12 11 9 9
'KRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S18227.  Gene #1806: 'KRT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KRT1 MUTATED 0 0 1 0 1 0 2 1 1
KRT1 WILD-TYPE 11 7 6 9 7 7 9 8 4
'TACC2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00568 (Fisher's exact test), Q value = 0.071

Table S18228.  Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TACC2 MUTATED 6 0 0 1 1
TACC2 WILD-TYPE 26 18 46 26 22

Figure S4566.  Get High-res Image Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TACC2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.13

Table S18229.  Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TACC2 MUTATED 6 1 1
TACC2 WILD-TYPE 37 66 35

Figure S4567.  Get High-res Image Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TACC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S18230.  Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TACC2 MUTATED 0 1 24
TACC2 WILD-TYPE 42 172 123

Figure S4568.  Get High-res Image Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TACC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00864 (Fisher's exact test), Q value = 0.087

Table S18231.  Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TACC2 MUTATED 5 1 11
TACC2 WILD-TYPE 57 72 64

Figure S4569.  Get High-res Image Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TACC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.43

Table S18232.  Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TACC2 MUTATED 5 5 11
TACC2 WILD-TYPE 65 115 89
'TACC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S18233.  Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TACC2 MUTATED 3 0 1 2 2 9 3 0 1
TACC2 WILD-TYPE 38 26 29 27 37 60 17 14 21
'TACC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00833 (Fisher's exact test), Q value = 0.086

Table S18234.  Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TACC2 MUTATED 1 9 7 8
TACC2 WILD-TYPE 99 63 65 113

Figure S4570.  Get High-res Image Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TACC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S18235.  Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TACC2 MUTATED 1 1 15 3 5
TACC2 WILD-TYPE 58 74 59 116 33

Figure S4571.  Get High-res Image Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TACC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00068 (Fisher's exact test), Q value = 0.019

Table S18236.  Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TACC2 MUTATED 0 11 4 0 8
TACC2 WILD-TYPE 51 65 57 71 87

Figure S4572.  Get High-res Image Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TACC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00755 (Fisher's exact test), Q value = 0.081

Table S18237.  Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TACC2 MUTATED 3 6 1 4 1 2 0 5 1
TACC2 WILD-TYPE 66 42 38 12 52 18 21 33 49

Figure S4573.  Get High-res Image Gene #1807: 'TACC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GATA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 0.33

Table S18238.  Gene #1808: 'GATA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GATA6 MUTATED 1 0 3
GATA6 WILD-TYPE 41 173 144
'GATA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S18239.  Gene #1808: 'GATA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GATA6 MUTATED 1 3 0
GATA6 WILD-TYPE 69 117 100
'GATA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.73

Table S18240.  Gene #1808: 'GATA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GATA6 MUTATED 1 1 0 0 1 0 1 0 0
GATA6 WILD-TYPE 40 25 30 29 38 69 19 14 22
'GATA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.56

Table S18241.  Gene #1808: 'GATA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GATA6 MUTATED 0 2 0 2
GATA6 WILD-TYPE 100 70 72 119
'GATA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.68

Table S18242.  Gene #1808: 'GATA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GATA6 MUTATED 0 2 0 1 1
GATA6 WILD-TYPE 59 73 74 118 37
'GATA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.52

Table S18243.  Gene #1808: 'GATA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GATA6 MUTATED 2 0 1 0 1
GATA6 WILD-TYPE 49 76 60 71 94
'GATA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.51

Table S18244.  Gene #1808: 'GATA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GATA6 MUTATED 1 0 0 0 0 1 1 1 0
GATA6 WILD-TYPE 68 48 39 16 53 19 20 37 50
'NDC80 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S18245.  Gene #1809: 'NDC80 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NDC80 MUTATED 0 2 6
NDC80 WILD-TYPE 42 171 141
'NDC80 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18246.  Gene #1809: 'NDC80 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NDC80 MUTATED 2 2 2
NDC80 WILD-TYPE 60 71 73
'NDC80 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00669 (Fisher's exact test), Q value = 0.077

Table S18247.  Gene #1809: 'NDC80 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NDC80 MUTATED 0 1 7
NDC80 WILD-TYPE 70 119 93

Figure S4574.  Get High-res Image Gene #1809: 'NDC80 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NDC80 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S18248.  Gene #1809: 'NDC80 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NDC80 MUTATED 2 0 1 0 1 4 0 0 0
NDC80 WILD-TYPE 39 26 29 29 38 65 20 14 22
'NDC80 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S18249.  Gene #1809: 'NDC80 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NDC80 MUTATED 2 2 2 2
NDC80 WILD-TYPE 98 70 70 119
'NDC80 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S18250.  Gene #1809: 'NDC80 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NDC80 MUTATED 2 1 3 1 1
NDC80 WILD-TYPE 57 74 71 118 37
'NDC80 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.48

Table S18251.  Gene #1809: 'NDC80 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NDC80 MUTATED 0 4 2 0 2
NDC80 WILD-TYPE 51 72 59 71 93
'NDC80 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.63

Table S18252.  Gene #1809: 'NDC80 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NDC80 MUTATED 1 3 0 1 1 1 0 1 0
NDC80 WILD-TYPE 68 45 39 15 52 19 21 37 50
'HLA-G MUTATION STATUS' versus 'CN_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.96

Table S18253.  Gene #1810: 'HLA-G MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HLA-G MUTATED 0 6 4
HLA-G WILD-TYPE 42 167 143
'HLA-G MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.99

Table S18254.  Gene #1810: 'HLA-G MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HLA-G MUTATED 3 4 2
HLA-G WILD-TYPE 59 69 73
'HLA-G MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S18255.  Gene #1810: 'HLA-G MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HLA-G MUTATED 0 6 3
HLA-G WILD-TYPE 70 114 97
'HLA-G MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S18256.  Gene #1810: 'HLA-G MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HLA-G MUTATED 0 0 0 1 0 3 2 2 1
HLA-G WILD-TYPE 41 26 30 28 39 66 18 12 21
'HLA-G MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.72

Table S18257.  Gene #1810: 'HLA-G MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HLA-G MUTATED 4 4 1 2
HLA-G WILD-TYPE 96 68 71 119
'HLA-G MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.052 (Fisher's exact test), Q value = 0.24

Table S18258.  Gene #1810: 'HLA-G MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HLA-G MUTATED 2 4 3 0 2
HLA-G WILD-TYPE 57 71 71 119 36
'HLA-G MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S18259.  Gene #1810: 'HLA-G MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HLA-G MUTATED 2 4 1 2 2
HLA-G WILD-TYPE 49 72 60 69 93
'HLA-G MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S18260.  Gene #1810: 'HLA-G MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HLA-G MUTATED 4 0 0 0 3 2 0 2 0
HLA-G WILD-TYPE 65 48 39 16 50 18 21 36 50
'HLA-G MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18261.  Gene #1810: 'HLA-G MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HLA-G MUTATED 1 1 1 1 0 0
HLA-G WILD-TYPE 12 15 13 10 11 9
'HLA-G MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S18262.  Gene #1810: 'HLA-G MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HLA-G MUTATED 0 1 0 1 1 0 0 1 0
HLA-G WILD-TYPE 11 6 7 8 7 7 11 8 5
'TNNT2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18263.  Gene #1811: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TNNT2 MUTATED 1 0 1 1 0
TNNT2 WILD-TYPE 31 18 45 26 23
'TNNT2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S18264.  Gene #1811: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TNNT2 MUTATED 2 0 1
TNNT2 WILD-TYPE 41 67 35
'TNNT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.21

Table S18265.  Gene #1811: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TNNT2 MUTATED 0 1 7
TNNT2 WILD-TYPE 42 172 140

Figure S4575.  Get High-res Image Gene #1811: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TNNT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S18266.  Gene #1811: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TNNT2 MUTATED 3 0 2
TNNT2 WILD-TYPE 59 73 73
'TNNT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S18267.  Gene #1811: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TNNT2 MUTATED 0 2 3
TNNT2 WILD-TYPE 70 118 97
'TNNT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.033 (Fisher's exact test), Q value = 0.19

Table S18268.  Gene #1811: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TNNT2 MUTATED 0 0 0 0 1 1 3 0 0
TNNT2 WILD-TYPE 41 26 30 29 38 68 17 14 22

Figure S4576.  Get High-res Image Gene #1811: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'TNNT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.51

Table S18269.  Gene #1811: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TNNT2 MUTATED 0 3 2 3
TNNT2 WILD-TYPE 100 69 70 118
'TNNT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0389 (Fisher's exact test), Q value = 0.21

Table S18270.  Gene #1811: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TNNT2 MUTATED 0 0 5 2 1
TNNT2 WILD-TYPE 59 75 69 117 37

Figure S4577.  Get High-res Image Gene #1811: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TNNT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.48

Table S18271.  Gene #1811: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TNNT2 MUTATED 0 4 1 0 2
TNNT2 WILD-TYPE 51 72 60 71 93
'TNNT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S18272.  Gene #1811: 'TNNT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TNNT2 MUTATED 0 1 0 1 3 1 0 1 0
TNNT2 WILD-TYPE 69 47 39 15 50 19 21 37 50
'PPM1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.57

Table S18273.  Gene #1812: 'PPM1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PPM1B MUTATED 0 1 4
PPM1B WILD-TYPE 42 172 143
'PPM1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S18274.  Gene #1812: 'PPM1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PPM1B MUTATED 0 1 3
PPM1B WILD-TYPE 62 72 72
'PPM1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S18275.  Gene #1812: 'PPM1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PPM1B MUTATED 0 3 1
PPM1B WILD-TYPE 70 117 99
'PPM1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0822 (Fisher's exact test), Q value = 0.31

Table S18276.  Gene #1812: 'PPM1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PPM1B MUTATED 0 0 0 3 0 1 0 0 0
PPM1B WILD-TYPE 41 26 30 26 39 68 20 14 22
'PPM1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S18277.  Gene #1812: 'PPM1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PPM1B MUTATED 1 3 0 1
PPM1B WILD-TYPE 99 69 72 120
'PPM1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S18278.  Gene #1812: 'PPM1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PPM1B MUTATED 0 2 2 0 1
PPM1B WILD-TYPE 59 73 72 119 37
'PPM1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S18279.  Gene #1812: 'PPM1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PPM1B MUTATED 0 3 0 1 1
PPM1B WILD-TYPE 51 73 61 70 94
'PPM1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S18280.  Gene #1812: 'PPM1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PPM1B MUTATED 3 0 0 1 0 0 0 1 0
PPM1B WILD-TYPE 66 48 39 15 53 20 21 37 50
'ZNF232 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.8

Table S18281.  Gene #1813: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF232 MUTATED 0 1 3
ZNF232 WILD-TYPE 42 172 144
'ZNF232 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18282.  Gene #1813: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF232 MUTATED 1 1 2
ZNF232 WILD-TYPE 61 72 73
'ZNF232 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S18283.  Gene #1813: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF232 MUTATED 1 0 3
ZNF232 WILD-TYPE 69 120 97
'ZNF232 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S18284.  Gene #1813: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF232 MUTATED 1 0 0 0 0 3 0 0 0
ZNF232 WILD-TYPE 40 26 30 29 39 66 20 14 22
'ZNF232 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.2

Table S18285.  Gene #1813: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF232 MUTATED 1 3 0 0
ZNF232 WILD-TYPE 99 69 72 121

Figure S4578.  Get High-res Image Gene #1813: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF232 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S18286.  Gene #1813: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF232 MUTATED 1 1 2 0 0
ZNF232 WILD-TYPE 58 74 72 119 38
'ZNF232 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.94

Table S18287.  Gene #1813: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF232 MUTATED 0 2 1 0 1
ZNF232 WILD-TYPE 51 74 60 71 94
'ZNF232 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 0.91

Table S18288.  Gene #1813: 'ZNF232 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF232 MUTATED 1 1 0 1 0 0 0 0 1
ZNF232 WILD-TYPE 68 47 39 15 53 20 21 38 49
'HRASLS5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18289.  Gene #1814: 'HRASLS5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HRASLS5 MUTATED 0 3 2
HRASLS5 WILD-TYPE 42 170 145
'HRASLS5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.73

Table S18290.  Gene #1814: 'HRASLS5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HRASLS5 MUTATED 1 2 0
HRASLS5 WILD-TYPE 61 71 75
'HRASLS5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18291.  Gene #1814: 'HRASLS5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HRASLS5 MUTATED 1 2 1
HRASLS5 WILD-TYPE 69 118 99
'HRASLS5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S18292.  Gene #1814: 'HRASLS5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HRASLS5 MUTATED 1 1 1 0 0 1 0 0 0
HRASLS5 WILD-TYPE 40 25 29 29 39 68 20 14 22
'HRASLS5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S18293.  Gene #1814: 'HRASLS5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HRASLS5 MUTATED 2 1 1 1
HRASLS5 WILD-TYPE 98 71 71 120
'HRASLS5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0763 (Fisher's exact test), Q value = 0.3

Table S18294.  Gene #1814: 'HRASLS5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HRASLS5 MUTATED 2 2 0 0 1
HRASLS5 WILD-TYPE 57 73 74 119 37
'HRASLS5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S18295.  Gene #1814: 'HRASLS5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HRASLS5 MUTATED 0 1 2 0 2
HRASLS5 WILD-TYPE 51 75 59 71 93
'HRASLS5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.63

Table S18296.  Gene #1814: 'HRASLS5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HRASLS5 MUTATED 0 2 1 0 0 1 0 0 1
HRASLS5 WILD-TYPE 69 46 38 16 53 19 21 38 49
'PRSS35 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.92

Table S18297.  Gene #1815: 'PRSS35 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PRSS35 MUTATED 2 1 1 2 0
PRSS35 WILD-TYPE 30 17 45 25 23
'PRSS35 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.88

Table S18298.  Gene #1815: 'PRSS35 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PRSS35 MUTATED 3 2 1
PRSS35 WILD-TYPE 40 65 35
'PRSS35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.5

Table S18299.  Gene #1815: 'PRSS35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRSS35 MUTATED 0 4 8
PRSS35 WILD-TYPE 42 169 139
'PRSS35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.11

Table S18300.  Gene #1815: 'PRSS35 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRSS35 MUTATED 5 0 1
PRSS35 WILD-TYPE 57 73 74

Figure S4579.  Get High-res Image Gene #1815: 'PRSS35 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PRSS35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0883 (Fisher's exact test), Q value = 0.32

Table S18301.  Gene #1815: 'PRSS35 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRSS35 MUTATED 2 1 6
PRSS35 WILD-TYPE 68 119 94
'PRSS35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S18302.  Gene #1815: 'PRSS35 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRSS35 MUTATED 2 1 1 0 0 4 1 0 0
PRSS35 WILD-TYPE 39 25 29 29 39 65 19 14 22
'PRSS35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S18303.  Gene #1815: 'PRSS35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRSS35 MUTATED 2 2 3 5
PRSS35 WILD-TYPE 98 70 69 116
'PRSS35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.82

Table S18304.  Gene #1815: 'PRSS35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRSS35 MUTATED 2 1 2 4 3
PRSS35 WILD-TYPE 57 74 72 115 35
'PRSS35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S18305.  Gene #1815: 'PRSS35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRSS35 MUTATED 1 2 2 2 4
PRSS35 WILD-TYPE 50 74 59 69 91
'PRSS35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.74

Table S18306.  Gene #1815: 'PRSS35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRSS35 MUTATED 0 2 1 1 3 1 0 2 1
PRSS35 WILD-TYPE 69 46 38 15 50 19 21 36 49
'SF3B2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.13

Table S18307.  Gene #1816: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SF3B2 MUTATED 3 1 6
SF3B2 WILD-TYPE 39 172 141

Figure S4580.  Get High-res Image Gene #1816: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SF3B2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S18308.  Gene #1816: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SF3B2 MUTATED 2 1 5
SF3B2 WILD-TYPE 60 72 70
'SF3B2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.59

Table S18309.  Gene #1816: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SF3B2 MUTATED 1 7 2
SF3B2 WILD-TYPE 69 113 98
'SF3B2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.87

Table S18310.  Gene #1816: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SF3B2 MUTATED 1 0 1 2 1 2 2 1 0
SF3B2 WILD-TYPE 40 26 29 27 38 67 18 13 22
'SF3B2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S18311.  Gene #1816: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SF3B2 MUTATED 1 5 2 2
SF3B2 WILD-TYPE 99 67 70 119
'SF3B2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00571 (Fisher's exact test), Q value = 0.071

Table S18312.  Gene #1816: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SF3B2 MUTATED 0 1 7 1 1
SF3B2 WILD-TYPE 59 74 67 118 37

Figure S4581.  Get High-res Image Gene #1816: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SF3B2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0514 (Fisher's exact test), Q value = 0.24

Table S18313.  Gene #1816: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SF3B2 MUTATED 3 5 0 1 1
SF3B2 WILD-TYPE 48 71 61 70 94
'SF3B2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0533 (Fisher's exact test), Q value = 0.25

Table S18314.  Gene #1816: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SF3B2 MUTATED 3 0 1 2 2 2 0 0 0
SF3B2 WILD-TYPE 66 48 38 14 51 18 21 38 50
'SF3B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00633 (Fisher's exact test), Q value = 0.074

Table S18315.  Gene #1816: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SF3B2 MUTATED 0 0 0 0 3 0
SF3B2 WILD-TYPE 13 16 14 11 8 9

Figure S4582.  Get High-res Image Gene #1816: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SF3B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.86

Table S18316.  Gene #1816: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SF3B2 MUTATED 0 0 0 1 1 1 0 0 0
SF3B2 WILD-TYPE 11 7 7 8 7 6 11 9 5
'OR5L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S18317.  Gene #1817: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR5L2 MUTATED 2 4 8
OR5L2 WILD-TYPE 40 169 139
'OR5L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.62

Table S18318.  Gene #1817: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR5L2 MUTATED 5 2 6
OR5L2 WILD-TYPE 57 71 69
'OR5L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.72

Table S18319.  Gene #1817: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR5L2 MUTATED 2 3 6
OR5L2 WILD-TYPE 68 117 94
'OR5L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.69

Table S18320.  Gene #1817: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR5L2 MUTATED 1 0 0 3 2 3 2 0 0
OR5L2 WILD-TYPE 40 26 30 26 37 66 18 14 22
'OR5L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0872 (Fisher's exact test), Q value = 0.32

Table S18321.  Gene #1817: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR5L2 MUTATED 4 5 4 1
OR5L2 WILD-TYPE 96 67 68 120
'OR5L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.22

Table S18322.  Gene #1817: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR5L2 MUTATED 3 4 6 1 0
OR5L2 WILD-TYPE 56 71 68 118 38

Figure S4583.  Get High-res Image Gene #1817: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OR5L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0876 (Fisher's exact test), Q value = 0.32

Table S18323.  Gene #1817: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR5L2 MUTATED 2 7 1 3 1
OR5L2 WILD-TYPE 49 69 60 68 94
'OR5L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S18324.  Gene #1817: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR5L2 MUTATED 3 5 0 2 1 1 0 1 1
OR5L2 WILD-TYPE 66 43 39 14 52 19 21 37 49
'OR5L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0952 (Fisher's exact test), Q value = 0.34

Table S18325.  Gene #1817: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OR5L2 MUTATED 0 0 0 2 1 0
OR5L2 WILD-TYPE 13 16 14 9 10 9
'OR5L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0409 (Fisher's exact test), Q value = 0.21

Table S18326.  Gene #1817: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OR5L2 MUTATED 0 0 0 0 0 0 3 0 0
OR5L2 WILD-TYPE 11 7 7 9 8 7 8 9 5

Figure S4584.  Get High-res Image Gene #1817: 'OR5L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'APAF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.17

Table S18327.  Gene #1818: 'APAF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
APAF1 MUTATED 4 0 0 2 0
APAF1 WILD-TYPE 28 18 46 25 23

Figure S4585.  Get High-res Image Gene #1818: 'APAF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'APAF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0168 (Fisher's exact test), Q value = 0.13

Table S18328.  Gene #1818: 'APAF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
APAF1 MUTATED 5 1 0
APAF1 WILD-TYPE 38 66 36

Figure S4586.  Get High-res Image Gene #1818: 'APAF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'APAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.15

Table S18329.  Gene #1818: 'APAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
APAF1 MUTATED 1 4 13
APAF1 WILD-TYPE 41 169 134

Figure S4587.  Get High-res Image Gene #1818: 'APAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'APAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S18330.  Gene #1818: 'APAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
APAF1 MUTATED 1 4 7
APAF1 WILD-TYPE 61 69 68
'APAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.95

Table S18331.  Gene #1818: 'APAF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
APAF1 MUTATED 4 5 7
APAF1 WILD-TYPE 66 115 93
'APAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.99

Table S18332.  Gene #1818: 'APAF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
APAF1 MUTATED 1 0 1 3 3 5 1 0 2
APAF1 WILD-TYPE 40 26 29 26 36 64 19 14 20
'APAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.93

Table S18333.  Gene #1818: 'APAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
APAF1 MUTATED 3 5 3 7
APAF1 WILD-TYPE 97 67 69 114
'APAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0374 (Fisher's exact test), Q value = 0.21

Table S18334.  Gene #1818: 'APAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
APAF1 MUTATED 2 3 6 2 5
APAF1 WILD-TYPE 57 72 68 117 33

Figure S4588.  Get High-res Image Gene #1818: 'APAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'APAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.8

Table S18335.  Gene #1818: 'APAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
APAF1 MUTATED 4 5 1 2 5
APAF1 WILD-TYPE 47 71 60 69 90
'APAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S18336.  Gene #1818: 'APAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
APAF1 MUTATED 4 1 1 1 3 2 1 3 1
APAF1 WILD-TYPE 65 47 38 15 50 18 20 35 49
'KRT39 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S18337.  Gene #1819: 'KRT39 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KRT39 MUTATED 0 4 2
KRT39 WILD-TYPE 42 169 145
'KRT39 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S18338.  Gene #1819: 'KRT39 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KRT39 MUTATED 2 1 2
KRT39 WILD-TYPE 60 72 73
'KRT39 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S18339.  Gene #1819: 'KRT39 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KRT39 MUTATED 1 3 3
KRT39 WILD-TYPE 69 117 97
'KRT39 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.91

Table S18340.  Gene #1819: 'KRT39 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KRT39 MUTATED 1 0 1 1 1 1 2 0 0
KRT39 WILD-TYPE 40 26 29 28 38 68 18 14 22
'KRT39 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.94

Table S18341.  Gene #1819: 'KRT39 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KRT39 MUTATED 3 2 1 1
KRT39 WILD-TYPE 97 70 71 120
'KRT39 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.95

Table S18342.  Gene #1819: 'KRT39 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KRT39 MUTATED 2 2 1 1 1
KRT39 WILD-TYPE 57 73 73 118 37
'KRT39 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.88

Table S18343.  Gene #1819: 'KRT39 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KRT39 MUTATED 2 1 0 1 3
KRT39 WILD-TYPE 49 75 61 70 92
'KRT39 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S18344.  Gene #1819: 'KRT39 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KRT39 MUTATED 1 2 0 0 1 1 0 1 1
KRT39 WILD-TYPE 68 46 39 16 52 19 21 37 49
'IL3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S18345.  Gene #1820: 'IL3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
IL3 MUTATED 2 0 0 0 1
IL3 WILD-TYPE 30 18 46 27 22
'IL3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S18346.  Gene #1820: 'IL3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
IL3 MUTATED 2 0 1
IL3 WILD-TYPE 41 67 35
'IL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18347.  Gene #1820: 'IL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
IL3 MUTATED 0 3 3
IL3 WILD-TYPE 42 170 144
'IL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S18348.  Gene #1820: 'IL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
IL3 MUTATED 1 2 0
IL3 WILD-TYPE 61 71 75
'IL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0635 (Fisher's exact test), Q value = 0.27

Table S18349.  Gene #1820: 'IL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
IL3 MUTATED 1 0 4
IL3 WILD-TYPE 69 120 96
'IL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 0.99

Table S18350.  Gene #1820: 'IL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
IL3 MUTATED 1 0 0 0 0 3 1 0 0
IL3 WILD-TYPE 40 26 30 29 39 66 19 14 22
'IL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S18351.  Gene #1820: 'IL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
IL3 MUTATED 2 0 1 3
IL3 WILD-TYPE 98 72 71 118
'IL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.89

Table S18352.  Gene #1820: 'IL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
IL3 MUTATED 2 1 0 3 0
IL3 WILD-TYPE 57 74 74 116 38
'IL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.76

Table S18353.  Gene #1820: 'IL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
IL3 MUTATED 2 0 1 1 1
IL3 WILD-TYPE 49 76 60 70 94
'IL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S18354.  Gene #1820: 'IL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
IL3 MUTATED 2 1 0 0 0 0 2 0 0
IL3 WILD-TYPE 67 47 39 16 53 20 19 38 50
'UST MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18355.  Gene #1821: 'UST MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
UST MUTATED 1 4 4
UST WILD-TYPE 41 169 143
'UST MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.77

Table S18356.  Gene #1821: 'UST MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
UST MUTATED 3 1 4
UST WILD-TYPE 59 72 71
'UST MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S18357.  Gene #1821: 'UST MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
UST MUTATED 3 2 4
UST WILD-TYPE 67 118 96
'UST MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S18358.  Gene #1821: 'UST MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
UST MUTATED 2 1 1 0 1 3 0 1 0
UST WILD-TYPE 39 25 29 29 38 66 20 13 22
'UST MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.3

Table S18359.  Gene #1821: 'UST MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
UST MUTATED 2 5 1 1
UST WILD-TYPE 98 67 71 120
'UST MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.38

Table S18360.  Gene #1821: 'UST MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
UST MUTATED 0 2 5 2 0
UST WILD-TYPE 59 73 69 117 38
'UST MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.82

Table S18361.  Gene #1821: 'UST MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
UST MUTATED 1 4 2 1 1
UST WILD-TYPE 50 72 59 70 94
'UST MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.65

Table S18362.  Gene #1821: 'UST MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
UST MUTATED 4 2 0 1 0 0 0 0 2
UST WILD-TYPE 65 46 39 15 53 20 21 38 48
'UST MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.93

Table S18363.  Gene #1821: 'UST MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
UST MUTATED 0 2 1 0 0 0
UST WILD-TYPE 13 14 13 11 11 9
'UST MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S18364.  Gene #1821: 'UST MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
UST MUTATED 1 0 0 0 1 0 1 0 0
UST WILD-TYPE 10 7 7 9 7 7 10 9 5
'CYTSA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S18365.  Gene #1822: 'CYTSA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CYTSA MUTATED 4 0 1 1 0
CYTSA WILD-TYPE 28 18 45 26 23
'CYTSA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.13

Table S18366.  Gene #1822: 'CYTSA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CYTSA MUTATED 5 1 0
CYTSA WILD-TYPE 38 66 36

Figure S4589.  Get High-res Image Gene #1822: 'CYTSA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CYTSA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 0.16

Table S18367.  Gene #1822: 'CYTSA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CYTSA MUTATED 0 2 9
CYTSA WILD-TYPE 42 171 138

Figure S4590.  Get High-res Image Gene #1822: 'CYTSA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CYTSA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 0.17

Table S18368.  Gene #1822: 'CYTSA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CYTSA MUTATED 4 1 0
CYTSA WILD-TYPE 58 72 75

Figure S4591.  Get High-res Image Gene #1822: 'CYTSA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CYTSA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S18369.  Gene #1822: 'CYTSA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CYTSA MUTATED 1 2 5
CYTSA WILD-TYPE 69 118 95
'CYTSA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S18370.  Gene #1822: 'CYTSA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CYTSA MUTATED 1 0 0 1 1 4 0 0 1
CYTSA WILD-TYPE 40 26 30 28 38 65 20 14 21
'CYTSA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0938 (Fisher's exact test), Q value = 0.33

Table S18371.  Gene #1822: 'CYTSA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CYTSA MUTATED 0 2 3 6
CYTSA WILD-TYPE 100 70 69 115
'CYTSA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0984 (Fisher's exact test), Q value = 0.34

Table S18372.  Gene #1822: 'CYTSA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CYTSA MUTATED 2 1 2 2 4
CYTSA WILD-TYPE 57 74 72 117 34
'CYTSA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.8

Table S18373.  Gene #1822: 'CYTSA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CYTSA MUTATED 0 2 2 1 5
CYTSA WILD-TYPE 51 74 59 70 90
'CYTSA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.53

Table S18374.  Gene #1822: 'CYTSA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CYTSA MUTATED 1 2 0 1 0 0 1 3 2
CYTSA WILD-TYPE 68 46 39 15 53 20 20 35 48
'PEAR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 0.25

Table S18375.  Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PEAR1 MUTATED 3 0 0 0 0
PEAR1 WILD-TYPE 29 18 46 27 23
'PEAR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0382 (Fisher's exact test), Q value = 0.21

Table S18376.  Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PEAR1 MUTATED 3 0 0
PEAR1 WILD-TYPE 40 67 36

Figure S4592.  Get High-res Image Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PEAR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S18377.  Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PEAR1 MUTATED 1 1 9
PEAR1 WILD-TYPE 41 172 138

Figure S4593.  Get High-res Image Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PEAR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 0.28

Table S18378.  Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PEAR1 MUTATED 3 0 5
PEAR1 WILD-TYPE 59 73 70
'PEAR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S18379.  Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PEAR1 MUTATED 1 3 5
PEAR1 WILD-TYPE 69 117 95
'PEAR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S18380.  Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PEAR1 MUTATED 0 1 1 1 0 4 2 0 0
PEAR1 WILD-TYPE 41 25 29 28 39 65 18 14 22
'PEAR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.78

Table S18381.  Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PEAR1 MUTATED 1 3 3 4
PEAR1 WILD-TYPE 99 69 69 117
'PEAR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00554 (Fisher's exact test), Q value = 0.07

Table S18382.  Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PEAR1 MUTATED 0 1 6 1 3
PEAR1 WILD-TYPE 59 74 68 118 35

Figure S4594.  Get High-res Image Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PEAR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S18383.  Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PEAR1 MUTATED 1 5 1 0 4
PEAR1 WILD-TYPE 50 71 60 71 91
'PEAR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00771 (Fisher's exact test), Q value = 0.082

Table S18384.  Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PEAR1 MUTATED 1 1 0 4 1 1 0 2 1
PEAR1 WILD-TYPE 68 47 39 12 52 19 21 36 49

Figure S4595.  Get High-res Image Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PEAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0218 (Fisher's exact test), Q value = 0.15

Table S18385.  Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PEAR1 MUTATED 1 0 0 0 3 0
PEAR1 WILD-TYPE 12 16 14 11 8 9

Figure S4596.  Get High-res Image Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PEAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S18386.  Gene #1823: 'PEAR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PEAR1 MUTATED 0 0 0 1 1 1 0 0 1
PEAR1 WILD-TYPE 11 7 7 8 7 6 11 9 4
'HIST1H1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.39

Table S18387.  Gene #1824: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HIST1H1B MUTATED 1 1 5
HIST1H1B WILD-TYPE 41 172 142
'HIST1H1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S18388.  Gene #1824: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HIST1H1B MUTATED 3 1 2
HIST1H1B WILD-TYPE 59 72 73
'HIST1H1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.5

Table S18389.  Gene #1824: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HIST1H1B MUTATED 0 2 4
HIST1H1B WILD-TYPE 70 118 96
'HIST1H1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S18390.  Gene #1824: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HIST1H1B MUTATED 0 0 0 1 1 3 0 0 1
HIST1H1B WILD-TYPE 41 26 30 28 38 66 20 14 21
'HIST1H1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S18391.  Gene #1824: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HIST1H1B MUTATED 1 1 4 1
HIST1H1B WILD-TYPE 99 71 68 120
'HIST1H1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0594 (Fisher's exact test), Q value = 0.26

Table S18392.  Gene #1824: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HIST1H1B MUTATED 1 1 4 0 1
HIST1H1B WILD-TYPE 58 74 70 119 37
'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.62

Table S18393.  Gene #1824: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HIST1H1B MUTATED 1 2 3 0 1
HIST1H1B WILD-TYPE 50 74 58 71 94
'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.95

Table S18394.  Gene #1824: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HIST1H1B MUTATED 2 3 0 0 1 0 0 1 0
HIST1H1B WILD-TYPE 67 45 39 16 52 20 21 37 50
'SIRT4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S18395.  Gene #1825: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SIRT4 MUTATED 1 0 0 2 0
SIRT4 WILD-TYPE 31 18 46 25 23
'SIRT4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S18396.  Gene #1825: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SIRT4 MUTATED 2 0 1
SIRT4 WILD-TYPE 41 67 35
'SIRT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.1

Table S18397.  Gene #1825: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SIRT4 MUTATED 0 0 6
SIRT4 WILD-TYPE 42 173 141

Figure S4597.  Get High-res Image Gene #1825: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SIRT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S18398.  Gene #1825: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SIRT4 MUTATED 1 0 2
SIRT4 WILD-TYPE 61 73 73
'SIRT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.7

Table S18399.  Gene #1825: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SIRT4 MUTATED 0 2 3
SIRT4 WILD-TYPE 70 118 97
'SIRT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 0.98

Table S18400.  Gene #1825: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SIRT4 MUTATED 0 0 0 0 1 3 1 0 0
SIRT4 WILD-TYPE 41 26 30 29 38 66 19 14 22
'SIRT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S18401.  Gene #1825: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SIRT4 MUTATED 0 2 1 3
SIRT4 WILD-TYPE 100 70 71 118
'SIRT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0577 (Fisher's exact test), Q value = 0.26

Table S18402.  Gene #1825: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SIRT4 MUTATED 0 0 3 1 2
SIRT4 WILD-TYPE 59 75 71 118 36
'SIRT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.72

Table S18403.  Gene #1825: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SIRT4 MUTATED 0 3 0 1 1
SIRT4 WILD-TYPE 51 73 61 70 94
'SIRT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S18404.  Gene #1825: 'SIRT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SIRT4 MUTATED 0 1 0 1 2 0 0 1 0
SIRT4 WILD-TYPE 69 47 39 15 51 20 21 37 50
'OLFM1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S18405.  Gene #1826: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OLFM1 MUTATED 1 0 0 2 0
OLFM1 WILD-TYPE 31 18 46 25 23
'OLFM1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.79

Table S18406.  Gene #1826: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OLFM1 MUTATED 2 1 0
OLFM1 WILD-TYPE 41 66 36
'OLFM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.62

Table S18407.  Gene #1826: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OLFM1 MUTATED 1 3 7
OLFM1 WILD-TYPE 41 170 140
'OLFM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.53

Table S18408.  Gene #1826: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OLFM1 MUTATED 1 1 5
OLFM1 WILD-TYPE 61 72 70
'OLFM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S18409.  Gene #1826: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OLFM1 MUTATED 2 5 3
OLFM1 WILD-TYPE 68 115 97
'OLFM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S18410.  Gene #1826: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OLFM1 MUTATED 1 1 3 1 0 3 0 1 0
OLFM1 WILD-TYPE 40 25 27 28 39 66 20 13 22
'OLFM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S18411.  Gene #1826: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OLFM1 MUTATED 1 5 1 4
OLFM1 WILD-TYPE 99 67 71 117
'OLFM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.71

Table S18412.  Gene #1826: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OLFM1 MUTATED 1 3 2 2 3
OLFM1 WILD-TYPE 58 72 72 117 35
'OLFM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S18413.  Gene #1826: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OLFM1 MUTATED 2 3 2 0 4
OLFM1 WILD-TYPE 49 73 59 71 91
'OLFM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.11

Table S18414.  Gene #1826: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OLFM1 MUTATED 1 0 0 2 2 2 1 3 0
OLFM1 WILD-TYPE 68 48 39 14 51 18 20 35 50

Figure S4598.  Get High-res Image Gene #1826: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OLFM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S18415.  Gene #1826: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OLFM1 MUTATED 1 0 1 0 1 0
OLFM1 WILD-TYPE 12 16 13 11 10 9
'OLFM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.82

Table S18416.  Gene #1826: 'OLFM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OLFM1 MUTATED 1 0 0 1 0 0 0 0 1
OLFM1 WILD-TYPE 10 7 7 8 8 7 11 9 4
'DDX55 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18417.  Gene #1827: 'DDX55 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
DDX55 MUTATED 1 0 1 1 0
DDX55 WILD-TYPE 31 18 45 26 23
'DDX55 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S18418.  Gene #1827: 'DDX55 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
DDX55 MUTATED 2 1 0
DDX55 WILD-TYPE 41 66 36
'DDX55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S18419.  Gene #1827: 'DDX55 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
DDX55 MUTATED 1 3 6
DDX55 WILD-TYPE 41 170 141
'DDX55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0514 (Fisher's exact test), Q value = 0.24

Table S18420.  Gene #1827: 'DDX55 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
DDX55 MUTATED 2 0 5
DDX55 WILD-TYPE 60 73 70
'DDX55 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.6

Table S18421.  Gene #1827: 'DDX55 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
DDX55 MUTATED 0 4 4
DDX55 WILD-TYPE 70 116 96
'DDX55 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S18422.  Gene #1827: 'DDX55 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
DDX55 MUTATED 2 0 0 2 2 2 0 0 0
DDX55 WILD-TYPE 39 26 30 27 37 67 20 14 22
'DDX55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.89

Table S18423.  Gene #1827: 'DDX55 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
DDX55 MUTATED 2 3 3 2
DDX55 WILD-TYPE 98 69 69 119
'DDX55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S18424.  Gene #1827: 'DDX55 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
DDX55 MUTATED 2 1 4 1 2
DDX55 WILD-TYPE 57 74 70 118 36
'DDX55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.83

Table S18425.  Gene #1827: 'DDX55 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
DDX55 MUTATED 2 3 2 0 3
DDX55 WILD-TYPE 49 73 59 71 92
'DDX55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0629 (Fisher's exact test), Q value = 0.27

Table S18426.  Gene #1827: 'DDX55 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
DDX55 MUTATED 1 3 2 2 0 0 0 2 0
DDX55 WILD-TYPE 68 45 37 14 53 20 21 36 50
'CLGN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.17

Table S18427.  Gene #1828: 'CLGN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CLGN MUTATED 0 2 9
CLGN WILD-TYPE 42 171 138

Figure S4599.  Get High-res Image Gene #1828: 'CLGN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CLGN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S18428.  Gene #1828: 'CLGN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CLGN MUTATED 3 1 6
CLGN WILD-TYPE 59 72 69
'CLGN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.92

Table S18429.  Gene #1828: 'CLGN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CLGN MUTATED 2 3 5
CLGN WILD-TYPE 68 117 95
'CLGN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S18430.  Gene #1828: 'CLGN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CLGN MUTATED 2 2 0 1 1 2 1 1 0
CLGN WILD-TYPE 39 24 30 28 38 67 19 13 22
'CLGN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.54

Table S18431.  Gene #1828: 'CLGN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CLGN MUTATED 2 5 2 2
CLGN WILD-TYPE 98 67 70 119
'CLGN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.89

Table S18432.  Gene #1828: 'CLGN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CLGN MUTATED 1 4 3 2 1
CLGN WILD-TYPE 58 71 71 117 37
'CLGN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.46

Table S18433.  Gene #1828: 'CLGN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CLGN MUTATED 1 5 1 0 4
CLGN WILD-TYPE 50 71 60 71 91
'CLGN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S18434.  Gene #1828: 'CLGN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CLGN MUTATED 2 2 1 2 0 0 0 2 2
CLGN WILD-TYPE 67 46 38 14 53 20 21 36 48
'EHBP1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.72

Table S18435.  Gene #1829: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
EHBP1L1 MUTATED 0 2 5
EHBP1L1 WILD-TYPE 42 171 142
'EHBP1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.59

Table S18436.  Gene #1829: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
EHBP1L1 MUTATED 2 0 3
EHBP1L1 WILD-TYPE 60 73 72
'EHBP1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.7

Table S18437.  Gene #1829: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
EHBP1L1 MUTATED 0 2 3
EHBP1L1 WILD-TYPE 70 118 97
'EHBP1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S18438.  Gene #1829: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
EHBP1L1 MUTATED 0 0 0 1 1 2 1 0 0
EHBP1L1 WILD-TYPE 41 26 30 28 38 67 19 14 22
'EHBP1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S18439.  Gene #1829: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
EHBP1L1 MUTATED 1 3 2 1
EHBP1L1 WILD-TYPE 99 69 70 120
'EHBP1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00938 (Fisher's exact test), Q value = 0.091

Table S18440.  Gene #1829: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
EHBP1L1 MUTATED 0 1 5 0 1
EHBP1L1 WILD-TYPE 59 74 69 119 37

Figure S4600.  Get High-res Image Gene #1829: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EHBP1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.59

Table S18441.  Gene #1829: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
EHBP1L1 MUTATED 1 4 0 1 1
EHBP1L1 WILD-TYPE 50 72 61 70 94
'EHBP1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.42

Table S18442.  Gene #1829: 'EHBP1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
EHBP1L1 MUTATED 1 1 0 2 0 1 0 1 1
EHBP1L1 WILD-TYPE 68 47 39 14 53 19 21 37 49
'ATP2A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.18

Table S18443.  Gene #1830: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ATP2A2 MUTATED 4 0 0 1 0
ATP2A2 WILD-TYPE 28 18 46 26 23

Figure S4601.  Get High-res Image Gene #1830: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATP2A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00301 (Fisher's exact test), Q value = 0.048

Table S18444.  Gene #1830: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ATP2A2 MUTATED 5 0 0
ATP2A2 WILD-TYPE 38 67 36

Figure S4602.  Get High-res Image Gene #1830: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ATP2A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0019 (Fisher's exact test), Q value = 0.037

Table S18445.  Gene #1830: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ATP2A2 MUTATED 2 1 11
ATP2A2 WILD-TYPE 40 172 136

Figure S4603.  Get High-res Image Gene #1830: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATP2A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.63

Table S18446.  Gene #1830: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ATP2A2 MUTATED 2 2 6
ATP2A2 WILD-TYPE 60 71 69
'ATP2A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.61

Table S18447.  Gene #1830: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ATP2A2 MUTATED 1 6 7
ATP2A2 WILD-TYPE 69 114 93
'ATP2A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S18448.  Gene #1830: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ATP2A2 MUTATED 1 1 1 3 0 5 3 0 0
ATP2A2 WILD-TYPE 40 25 29 26 39 64 17 14 22
'ATP2A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0664 (Fisher's exact test), Q value = 0.28

Table S18449.  Gene #1830: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ATP2A2 MUTATED 2 7 1 5
ATP2A2 WILD-TYPE 98 65 71 116
'ATP2A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00136 (Fisher's exact test), Q value = 0.03

Table S18450.  Gene #1830: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ATP2A2 MUTATED 0 3 6 1 5
ATP2A2 WILD-TYPE 59 72 68 118 33

Figure S4604.  Get High-res Image Gene #1830: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATP2A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 0.22

Table S18451.  Gene #1830: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ATP2A2 MUTATED 1 7 0 1 4
ATP2A2 WILD-TYPE 50 69 61 70 91

Figure S4605.  Get High-res Image Gene #1830: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ATP2A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00808 (Fisher's exact test), Q value = 0.084

Table S18452.  Gene #1830: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ATP2A2 MUTATED 1 1 0 4 2 1 0 3 1
ATP2A2 WILD-TYPE 68 47 39 12 51 19 21 35 49

Figure S4606.  Get High-res Image Gene #1830: 'ATP2A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GRAMD1C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.67

Table S18453.  Gene #1831: 'GRAMD1C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GRAMD1C MUTATED 1 1 0 1 0
GRAMD1C WILD-TYPE 31 17 46 26 23
'GRAMD1C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.55

Table S18454.  Gene #1831: 'GRAMD1C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GRAMD1C MUTATED 0 1 2
GRAMD1C WILD-TYPE 43 66 34
'GRAMD1C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.66

Table S18455.  Gene #1831: 'GRAMD1C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GRAMD1C MUTATED 0 4 7
GRAMD1C WILD-TYPE 42 169 140
'GRAMD1C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S18456.  Gene #1831: 'GRAMD1C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GRAMD1C MUTATED 4 2 2
GRAMD1C WILD-TYPE 58 71 73
'GRAMD1C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S18457.  Gene #1831: 'GRAMD1C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GRAMD1C MUTATED 1 5 4
GRAMD1C WILD-TYPE 69 115 96
'GRAMD1C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 0.77

Table S18458.  Gene #1831: 'GRAMD1C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GRAMD1C MUTATED 2 2 2 0 0 2 0 1 1
GRAMD1C WILD-TYPE 39 24 28 29 39 67 20 13 21
'GRAMD1C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S18459.  Gene #1831: 'GRAMD1C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GRAMD1C MUTATED 2 3 3 3
GRAMD1C WILD-TYPE 98 69 69 118
'GRAMD1C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S18460.  Gene #1831: 'GRAMD1C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GRAMD1C MUTATED 3 3 2 3 0
GRAMD1C WILD-TYPE 56 72 72 116 38
'GRAMD1C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S18461.  Gene #1831: 'GRAMD1C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GRAMD1C MUTATED 2 2 3 2 2
GRAMD1C WILD-TYPE 49 74 58 69 93
'GRAMD1C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S18462.  Gene #1831: 'GRAMD1C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GRAMD1C MUTATED 3 2 1 0 2 1 1 0 1
GRAMD1C WILD-TYPE 66 46 38 16 51 19 20 38 49
'GRAMD1C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S18463.  Gene #1831: 'GRAMD1C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GRAMD1C MUTATED 1 1 2 2 0 0
GRAMD1C WILD-TYPE 12 15 12 9 11 9
'GRAMD1C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S18464.  Gene #1831: 'GRAMD1C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GRAMD1C MUTATED 0 1 1 0 0 0 3 0 1
GRAMD1C WILD-TYPE 11 6 6 9 8 7 8 9 4
'TIPARP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S18465.  Gene #1832: 'TIPARP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TIPARP MUTATED 1 0 0 2 0
TIPARP WILD-TYPE 31 18 46 25 23
'TIPARP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.79

Table S18466.  Gene #1832: 'TIPARP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TIPARP MUTATED 2 1 0
TIPARP WILD-TYPE 41 66 36
'TIPARP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.19

Table S18467.  Gene #1832: 'TIPARP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TIPARP MUTATED 0 0 5
TIPARP WILD-TYPE 42 173 142

Figure S4607.  Get High-res Image Gene #1832: 'TIPARP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TIPARP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.98

Table S18468.  Gene #1832: 'TIPARP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TIPARP MUTATED 0 2 2
TIPARP WILD-TYPE 70 118 98
'TIPARP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S18469.  Gene #1832: 'TIPARP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TIPARP MUTATED 1 0 1 1 0 1 0 0 0
TIPARP WILD-TYPE 40 26 29 28 39 68 20 14 22
'TIPARP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S18470.  Gene #1832: 'TIPARP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TIPARP MUTATED 0 1 1 3
TIPARP WILD-TYPE 100 71 71 118
'TIPARP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S18471.  Gene #1832: 'TIPARP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TIPARP MUTATED 1 0 1 1 2
TIPARP WILD-TYPE 58 75 73 118 36
'TIPARP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S18472.  Gene #1832: 'TIPARP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TIPARP MUTATED 0 1 1 0 2
TIPARP WILD-TYPE 51 75 60 71 93
'TIPARP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.87

Table S18473.  Gene #1832: 'TIPARP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TIPARP MUTATED 1 1 0 0 0 1 0 1 0
TIPARP WILD-TYPE 68 47 39 16 53 19 21 37 50
'POLA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S18474.  Gene #1833: 'POLA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
POLA1 MUTATED 2 0 1 1 0
POLA1 WILD-TYPE 30 18 45 26 23
'POLA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18475.  Gene #1833: 'POLA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
POLA1 MUTATED 1 2 1
POLA1 WILD-TYPE 42 65 35
'POLA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.94

Table S18476.  Gene #1833: 'POLA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
POLA1 MUTATED 1 3 5
POLA1 WILD-TYPE 41 170 142
'POLA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.65

Table S18477.  Gene #1833: 'POLA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
POLA1 MUTATED 0 3 2
POLA1 WILD-TYPE 62 70 73
'POLA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.37

Table S18478.  Gene #1833: 'POLA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
POLA1 MUTATED 0 6 2
POLA1 WILD-TYPE 70 114 98
'POLA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.38

Table S18479.  Gene #1833: 'POLA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
POLA1 MUTATED 0 0 3 2 1 1 0 1 0
POLA1 WILD-TYPE 41 26 27 27 38 68 20 13 22
'POLA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.69

Table S18480.  Gene #1833: 'POLA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
POLA1 MUTATED 2 3 0 4
POLA1 WILD-TYPE 98 69 72 117
'POLA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 0.98

Table S18481.  Gene #1833: 'POLA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
POLA1 MUTATED 0 3 2 3 1
POLA1 WILD-TYPE 59 72 72 116 37
'POLA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S18482.  Gene #1833: 'POLA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
POLA1 MUTATED 3 2 0 1 3
POLA1 WILD-TYPE 48 74 61 70 92
'POLA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0358 (Fisher's exact test), Q value = 0.2

Table S18483.  Gene #1833: 'POLA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
POLA1 MUTATED 1 0 1 2 1 2 0 2 0
POLA1 WILD-TYPE 68 48 38 14 52 18 21 36 50

Figure S4608.  Get High-res Image Gene #1833: 'POLA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SAPS3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S18484.  Gene #1834: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SAPS3 MUTATED 2 0 0 1 0
SAPS3 WILD-TYPE 30 18 46 26 23
'SAPS3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S18485.  Gene #1834: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SAPS3 MUTATED 2 0 1
SAPS3 WILD-TYPE 41 67 35
'SAPS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.099

Table S18486.  Gene #1834: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SAPS3 MUTATED 1 1 9
SAPS3 WILD-TYPE 41 172 138

Figure S4609.  Get High-res Image Gene #1834: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SAPS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S18487.  Gene #1834: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SAPS3 MUTATED 3 2 2
SAPS3 WILD-TYPE 59 71 73
'SAPS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S18488.  Gene #1834: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SAPS3 MUTATED 1 3 6
SAPS3 WILD-TYPE 69 117 94
'SAPS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.76

Table S18489.  Gene #1834: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SAPS3 MUTATED 3 0 0 3 1 3 0 0 0
SAPS3 WILD-TYPE 38 26 30 26 38 66 20 14 22
'SAPS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.58

Table S18490.  Gene #1834: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SAPS3 MUTATED 2 1 5 3
SAPS3 WILD-TYPE 98 71 67 118
'SAPS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.4

Table S18491.  Gene #1834: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SAPS3 MUTATED 3 1 4 1 2
SAPS3 WILD-TYPE 56 74 70 118 36
'SAPS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.57

Table S18492.  Gene #1834: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SAPS3 MUTATED 0 4 3 2 1
SAPS3 WILD-TYPE 51 72 58 69 94
'SAPS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.95

Table S18493.  Gene #1834: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SAPS3 MUTATED 4 3 1 0 1 0 0 1 0
SAPS3 WILD-TYPE 65 45 38 16 52 20 21 37 50
'SAPS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S18494.  Gene #1834: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SAPS3 MUTATED 0 1 1 1 1 0
SAPS3 WILD-TYPE 13 15 13 10 10 9
'SAPS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S18495.  Gene #1834: 'SAPS3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SAPS3 MUTATED 0 0 1 0 0 1 2 0 0
SAPS3 WILD-TYPE 11 7 6 9 8 6 9 9 5
'ZFP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.27

Table S18496.  Gene #1835: 'ZFP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZFP1 MUTATED 0 0 4
ZFP1 WILD-TYPE 42 173 143
'ZFP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S18497.  Gene #1835: 'ZFP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZFP1 MUTATED 1 0 0 3
ZFP1 WILD-TYPE 99 72 72 118
'ZFP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.95

Table S18498.  Gene #1835: 'ZFP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZFP1 MUTATED 0 1 0 2 1
ZFP1 WILD-TYPE 59 74 74 117 37
'ZFP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.47

Table S18499.  Gene #1835: 'ZFP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZFP1 MUTATED 1 0 0 0 3
ZFP1 WILD-TYPE 50 76 61 71 92
'ZFP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.9

Table S18500.  Gene #1835: 'ZFP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZFP1 MUTATED 1 0 0 0 0 1 0 1 1
ZFP1 WILD-TYPE 68 48 39 16 53 19 21 37 49
'MLL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00115 (Fisher's exact test), Q value = 0.027

Table S18501.  Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MLL MUTATED 6 0 0 4 0
MLL WILD-TYPE 26 18 46 23 23

Figure S4610.  Get High-res Image Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MLL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S18502.  Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MLL MUTATED 6 3 1
MLL WILD-TYPE 37 64 35
'MLL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S18503.  Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MLL MUTATED 3 11 24
MLL WILD-TYPE 39 162 123

Figure S4611.  Get High-res Image Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0296 (Fisher's exact test), Q value = 0.18

Table S18504.  Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MLL MUTATED 14 5 9
MLL WILD-TYPE 48 68 66

Figure S4612.  Get High-res Image Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MLL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.19

Table S18505.  Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MLL MUTATED 3 14 17
MLL WILD-TYPE 67 106 83

Figure S4613.  Get High-res Image Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MLL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0465 (Fisher's exact test), Q value = 0.23

Table S18506.  Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MLL MUTATED 2 3 1 3 4 14 5 2 0
MLL WILD-TYPE 39 23 29 26 35 55 15 12 22

Figure S4614.  Get High-res Image Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MLL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S18507.  Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MLL MUTATED 7 11 10 10
MLL WILD-TYPE 93 61 62 111
'MLL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0319 (Fisher's exact test), Q value = 0.19

Table S18508.  Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MLL MUTATED 5 6 15 7 5
MLL WILD-TYPE 54 69 59 112 33

Figure S4615.  Get High-res Image Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MLL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.37

Table S18509.  Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MLL MUTATED 3 14 7 4 10
MLL WILD-TYPE 48 62 54 67 85
'MLL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0022

Table S18510.  Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MLL MUTATED 4 9 0 9 6 2 1 4 3
MLL WILD-TYPE 65 39 39 7 47 18 20 34 47

Figure S4616.  Get High-res Image Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MLL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 0.19

Table S18511.  Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MLL MUTATED 2 2 0 2 5 0
MLL WILD-TYPE 11 14 14 9 6 9

Figure S4617.  Get High-res Image Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MLL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S18512.  Gene #1836: 'MLL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MLL MUTATED 1 1 1 5 1 1 1 0 0
MLL WILD-TYPE 10 6 6 4 7 6 10 9 5
'TSC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S18513.  Gene #1837: 'TSC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TSC2 MUTATED 4 6 5
TSC2 WILD-TYPE 38 167 142
'TSC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S18514.  Gene #1837: 'TSC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TSC2 MUTATED 5 4 5
TSC2 WILD-TYPE 57 69 70
'TSC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S18515.  Gene #1837: 'TSC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TSC2 MUTATED 4 7 4
TSC2 WILD-TYPE 66 113 96
'TSC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S18516.  Gene #1837: 'TSC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TSC2 MUTATED 3 2 0 1 2 2 3 0 2
TSC2 WILD-TYPE 38 24 30 28 37 67 17 14 20
'TSC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.014

Table S18517.  Gene #1837: 'TSC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TSC2 MUTATED 2 6 7 0
TSC2 WILD-TYPE 98 66 65 121

Figure S4618.  Get High-res Image Gene #1837: 'TSC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TSC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00138 (Fisher's exact test), Q value = 0.031

Table S18518.  Gene #1837: 'TSC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TSC2 MUTATED 6 1 7 1 0
TSC2 WILD-TYPE 53 74 67 118 38

Figure S4619.  Get High-res Image Gene #1837: 'TSC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TSC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00606 (Fisher's exact test), Q value = 0.073

Table S18519.  Gene #1837: 'TSC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TSC2 MUTATED 2 9 2 0 2
TSC2 WILD-TYPE 49 67 59 71 93

Figure S4620.  Get High-res Image Gene #1837: 'TSC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TSC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.39

Table S18520.  Gene #1837: 'TSC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TSC2 MUTATED 6 3 0 2 2 1 0 1 0
TSC2 WILD-TYPE 63 45 39 14 51 19 21 37 50
'TSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.94

Table S18521.  Gene #1837: 'TSC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TSC2 MUTATED 0 2 1 2 1 0
TSC2 WILD-TYPE 13 14 13 9 10 9
'TSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S18522.  Gene #1837: 'TSC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TSC2 MUTATED 2 0 1 1 1 0 1 0 0
TSC2 WILD-TYPE 9 7 6 8 7 7 10 9 5
'MAK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.02

Table S18523.  Gene #1838: 'MAK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MAK MUTATED 0 0 9
MAK WILD-TYPE 42 173 138

Figure S4621.  Get High-res Image Gene #1838: 'MAK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 0.18

Table S18524.  Gene #1838: 'MAK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MAK MUTATED 1 0 5
MAK WILD-TYPE 61 73 70

Figure S4622.  Get High-res Image Gene #1838: 'MAK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MAK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.76

Table S18525.  Gene #1838: 'MAK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MAK MUTATED 2 2 5
MAK WILD-TYPE 68 118 95
'MAK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S18526.  Gene #1838: 'MAK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MAK MUTATED 1 1 1 0 1 4 1 0 0
MAK WILD-TYPE 40 25 29 29 38 65 19 14 22
'MAK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.41

Table S18527.  Gene #1838: 'MAK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MAK MUTATED 0 3 3 3
MAK WILD-TYPE 100 69 69 118
'MAK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0197 (Fisher's exact test), Q value = 0.14

Table S18528.  Gene #1838: 'MAK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MAK MUTATED 1 0 4 1 3
MAK WILD-TYPE 58 75 70 118 35

Figure S4623.  Get High-res Image Gene #1838: 'MAK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.48

Table S18529.  Gene #1838: 'MAK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MAK MUTATED 0 4 1 0 3
MAK WILD-TYPE 51 72 60 71 92
'MAK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0225 (Fisher's exact test), Q value = 0.15

Table S18530.  Gene #1838: 'MAK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MAK MUTATED 1 2 0 2 0 0 0 3 0
MAK WILD-TYPE 68 46 39 14 53 20 21 35 50

Figure S4624.  Get High-res Image Gene #1838: 'MAK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAAH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S18531.  Gene #1839: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FAAH2 MUTATED 3 0 1 0 1
FAAH2 WILD-TYPE 29 18 45 27 22
'FAAH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.65

Table S18532.  Gene #1839: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FAAH2 MUTATED 3 1 1
FAAH2 WILD-TYPE 40 66 35
'FAAH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.96

Table S18533.  Gene #1839: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAAH2 MUTATED 0 6 4
FAAH2 WILD-TYPE 42 167 143
'FAAH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.61

Table S18534.  Gene #1839: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAAH2 MUTATED 0 3 3
FAAH2 WILD-TYPE 62 70 72
'FAAH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.57

Table S18535.  Gene #1839: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAAH2 MUTATED 2 6 1
FAAH2 WILD-TYPE 68 114 99
'FAAH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00293 (Fisher's exact test), Q value = 0.047

Table S18536.  Gene #1839: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAAH2 MUTATED 0 1 3 1 0 0 3 1 0
FAAH2 WILD-TYPE 41 25 27 28 39 69 17 13 22

Figure S4625.  Get High-res Image Gene #1839: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'FAAH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0976 (Fisher's exact test), Q value = 0.34

Table S18537.  Gene #1839: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAAH2 MUTATED 2 5 0 4
FAAH2 WILD-TYPE 98 67 72 117
'FAAH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S18538.  Gene #1839: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAAH2 MUTATED 1 4 1 2 3
FAAH2 WILD-TYPE 58 71 73 117 35
'FAAH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.86

Table S18539.  Gene #1839: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAAH2 MUTATED 2 3 0 1 3
FAAH2 WILD-TYPE 49 73 61 70 92
'FAAH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.65

Table S18540.  Gene #1839: 'FAAH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAAH2 MUTATED 3 0 1 0 1 1 0 3 0
FAAH2 WILD-TYPE 66 48 38 16 52 19 21 35 50
'KIAA0355 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.95

Table S18541.  Gene #1840: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KIAA0355 MUTATED 0 3 4
KIAA0355 WILD-TYPE 42 170 143
'KIAA0355 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.65

Table S18542.  Gene #1840: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KIAA0355 MUTATED 1 4 1
KIAA0355 WILD-TYPE 61 69 74
'KIAA0355 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.56

Table S18543.  Gene #1840: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KIAA0355 MUTATED 3 1 2
KIAA0355 WILD-TYPE 67 119 98
'KIAA0355 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S18544.  Gene #1840: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KIAA0355 MUTATED 1 0 0 0 3 1 0 0 1
KIAA0355 WILD-TYPE 40 26 30 29 36 68 20 14 21
'KIAA0355 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.63

Table S18545.  Gene #1840: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KIAA0355 MUTATED 1 3 2 1
KIAA0355 WILD-TYPE 99 69 70 120
'KIAA0355 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.48

Table S18546.  Gene #1840: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KIAA0355 MUTATED 2 2 2 0 1
KIAA0355 WILD-TYPE 57 73 72 119 37
'KIAA0355 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.85

Table S18547.  Gene #1840: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KIAA0355 MUTATED 0 3 2 1 1
KIAA0355 WILD-TYPE 51 73 59 70 94
'KIAA0355 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S18548.  Gene #1840: 'KIAA0355 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KIAA0355 MUTATED 5 1 0 0 0 0 0 1 0
KIAA0355 WILD-TYPE 64 47 39 16 53 20 21 37 50
'SLC17A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0642 (Fisher's exact test), Q value = 0.27

Table S18549.  Gene #1841: 'SLC17A6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC17A6 MUTATED 2 2 8
SLC17A6 WILD-TYPE 40 171 139
'SLC17A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 0.24

Table S18550.  Gene #1841: 'SLC17A6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC17A6 MUTATED 3 1 8
SLC17A6 WILD-TYPE 59 72 67
'SLC17A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S18551.  Gene #1841: 'SLC17A6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC17A6 MUTATED 4 4 5
SLC17A6 WILD-TYPE 66 116 95
'SLC17A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.37

Table S18552.  Gene #1841: 'SLC17A6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC17A6 MUTATED 2 0 0 2 0 3 3 1 2
SLC17A6 WILD-TYPE 39 26 30 27 39 66 17 13 20
'SLC17A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S18553.  Gene #1841: 'SLC17A6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC17A6 MUTATED 2 6 4 1
SLC17A6 WILD-TYPE 98 66 68 120

Figure S4626.  Get High-res Image Gene #1841: 'SLC17A6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC17A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 0.12

Table S18554.  Gene #1841: 'SLC17A6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC17A6 MUTATED 3 3 6 0 1
SLC17A6 WILD-TYPE 56 72 68 119 37

Figure S4627.  Get High-res Image Gene #1841: 'SLC17A6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SLC17A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00415 (Fisher's exact test), Q value = 0.058

Table S18555.  Gene #1841: 'SLC17A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC17A6 MUTATED 1 8 3 0 1
SLC17A6 WILD-TYPE 50 68 58 71 94

Figure S4628.  Get High-res Image Gene #1841: 'SLC17A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SLC17A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S18556.  Gene #1841: 'SLC17A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC17A6 MUTATED 2 3 0 3 3 0 0 1 1
SLC17A6 WILD-TYPE 67 45 39 13 50 20 21 37 49
'SLC17A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.74

Table S18557.  Gene #1841: 'SLC17A6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SLC17A6 MUTATED 1 1 0 0 2 0
SLC17A6 WILD-TYPE 12 15 14 11 9 9
'SLC17A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.55

Table S18558.  Gene #1841: 'SLC17A6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SLC17A6 MUTATED 0 1 0 2 1 0 0 0 0
SLC17A6 WILD-TYPE 11 6 7 7 7 7 11 9 5
'HDAC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0985 (Fisher's exact test), Q value = 0.34

Table S18559.  Gene #1842: 'HDAC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HDAC2 MUTATED 2 1 4
HDAC2 WILD-TYPE 40 172 143
'HDAC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S18560.  Gene #1842: 'HDAC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HDAC2 MUTATED 3 0 2
HDAC2 WILD-TYPE 59 73 73
'HDAC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S18561.  Gene #1842: 'HDAC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HDAC2 MUTATED 1 4 2
HDAC2 WILD-TYPE 69 116 98
'HDAC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S18562.  Gene #1842: 'HDAC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HDAC2 MUTATED 1 0 2 1 2 1 0 0 0
HDAC2 WILD-TYPE 40 26 28 28 37 68 20 14 22
'HDAC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S18563.  Gene #1842: 'HDAC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HDAC2 MUTATED 0 2 3 2
HDAC2 WILD-TYPE 100 70 69 119
'HDAC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.94

Table S18564.  Gene #1842: 'HDAC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HDAC2 MUTATED 2 1 2 1 1
HDAC2 WILD-TYPE 57 74 72 118 37
'HDAC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S18565.  Gene #1842: 'HDAC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HDAC2 MUTATED 0 2 3 0 2
HDAC2 WILD-TYPE 51 74 58 71 93
'HDAC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.79

Table S18566.  Gene #1842: 'HDAC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HDAC2 MUTATED 1 2 0 1 1 1 0 1 0
HDAC2 WILD-TYPE 68 46 39 15 52 19 21 37 50
'F9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.2

Table S18567.  Gene #1843: 'F9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
F9 MUTATED 3 0 0 3 0
F9 WILD-TYPE 29 18 46 24 23

Figure S4629.  Get High-res Image Gene #1843: 'F9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'F9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.36

Table S18568.  Gene #1843: 'F9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
F9 MUTATED 4 1 1
F9 WILD-TYPE 39 66 35
'F9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 0.16

Table S18569.  Gene #1843: 'F9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
F9 MUTATED 2 4 13
F9 WILD-TYPE 40 169 134

Figure S4630.  Get High-res Image Gene #1843: 'F9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'F9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S18570.  Gene #1843: 'F9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
F9 MUTATED 6 3 4
F9 WILD-TYPE 56 70 71
'F9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18571.  Gene #1843: 'F9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
F9 MUTATED 4 7 5
F9 WILD-TYPE 66 113 95
'F9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0683 (Fisher's exact test), Q value = 0.28

Table S18572.  Gene #1843: 'F9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
F9 MUTATED 2 1 2 0 1 3 2 4 1
F9 WILD-TYPE 39 25 28 29 38 66 18 10 21
'F9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S18573.  Gene #1843: 'F9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
F9 MUTATED 4 3 5 7
F9 WILD-TYPE 96 69 67 114
'F9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.64

Table S18574.  Gene #1843: 'F9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
F9 MUTATED 3 4 5 3 4
F9 WILD-TYPE 56 71 69 116 34
'F9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.96

Table S18575.  Gene #1843: 'F9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
F9 MUTATED 3 3 5 4 3
F9 WILD-TYPE 48 73 56 67 92
'F9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 0.83

Table S18576.  Gene #1843: 'F9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
F9 MUTATED 4 3 3 2 2 1 1 2 0
F9 WILD-TYPE 65 45 36 14 51 19 20 36 50
'F9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.67

Table S18577.  Gene #1843: 'F9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
F9 MUTATED 1 0 1 2 2 0
F9 WILD-TYPE 12 16 13 9 9 9
'F9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.76

Table S18578.  Gene #1843: 'F9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
F9 MUTATED 0 0 0 1 2 0 1 2 0
F9 WILD-TYPE 11 7 7 8 6 7 10 7 5
'ZNF185 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0554 (Fisher's exact test), Q value = 0.25

Table S18579.  Gene #1844: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF185 MUTATED 3 0 0 0 0
ZNF185 WILD-TYPE 29 18 46 27 23
'ZNF185 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S18580.  Gene #1844: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF185 MUTATED 2 0 1
ZNF185 WILD-TYPE 41 67 35
'ZNF185 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.25

Table S18581.  Gene #1844: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF185 MUTATED 0 2 8
ZNF185 WILD-TYPE 42 171 139
'ZNF185 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.54

Table S18582.  Gene #1844: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF185 MUTATED 1 1 5
ZNF185 WILD-TYPE 61 72 70
'ZNF185 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S18583.  Gene #1844: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF185 MUTATED 1 5 3
ZNF185 WILD-TYPE 69 115 97
'ZNF185 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0761 (Fisher's exact test), Q value = 0.3

Table S18584.  Gene #1844: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF185 MUTATED 2 1 0 3 3 0 0 0 0
ZNF185 WILD-TYPE 39 25 30 26 36 69 20 14 22
'ZNF185 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.83

Table S18585.  Gene #1844: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF185 MUTATED 1 3 3 3
ZNF185 WILD-TYPE 99 69 69 118
'ZNF185 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0812 (Fisher's exact test), Q value = 0.31

Table S18586.  Gene #1844: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF185 MUTATED 1 1 5 1 2
ZNF185 WILD-TYPE 58 74 69 118 36
'ZNF185 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.61

Table S18587.  Gene #1844: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF185 MUTATED 0 5 1 2 2
ZNF185 WILD-TYPE 51 71 60 69 93
'ZNF185 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.72

Table S18588.  Gene #1844: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF185 MUTATED 5 1 0 0 2 0 0 2 0
ZNF185 WILD-TYPE 64 47 39 16 51 20 21 36 50
'ZNF185 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.81

Table S18589.  Gene #1844: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF185 MUTATED 0 1 2 0 0 0
ZNF185 WILD-TYPE 13 15 12 11 11 9
'ZNF185 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S18590.  Gene #1844: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF185 MUTATED 0 0 0 0 2 0 1 0 0
ZNF185 WILD-TYPE 11 7 7 9 6 7 10 9 5
'NXT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.96

Table S18591.  Gene #1845: 'NXT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NXT1 MUTATED 1 2 2
NXT1 WILD-TYPE 41 171 145
'NXT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S18592.  Gene #1845: 'NXT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NXT1 MUTATED 1 2 1
NXT1 WILD-TYPE 61 71 74
'NXT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S18593.  Gene #1845: 'NXT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NXT1 MUTATED 2 2 1
NXT1 WILD-TYPE 68 118 99
'NXT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.86

Table S18594.  Gene #1845: 'NXT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NXT1 MUTATED 1 1 0 2 0 1 0 0 0
NXT1 WILD-TYPE 40 25 30 27 39 68 20 14 22
'NXT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S18595.  Gene #1845: 'NXT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NXT1 MUTATED 2 1 1 1
NXT1 WILD-TYPE 98 71 71 120
'NXT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S18596.  Gene #1845: 'NXT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NXT1 MUTATED 1 1 2 1 0
NXT1 WILD-TYPE 58 74 72 118 38
'NXT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.93

Table S18597.  Gene #1845: 'NXT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NXT1 MUTATED 1 1 2 0 1
NXT1 WILD-TYPE 50 75 59 71 94
'NXT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S18598.  Gene #1845: 'NXT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NXT1 MUTATED 1 2 0 1 0 0 0 1 0
NXT1 WILD-TYPE 68 46 39 15 53 20 21 37 50
'CHGB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.44

Table S18599.  Gene #1846: 'CHGB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CHGB MUTATED 2 0 0 2 0
CHGB WILD-TYPE 30 18 46 25 23
'CHGB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S18600.  Gene #1846: 'CHGB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CHGB MUTATED 3 1 0
CHGB WILD-TYPE 40 66 36
'CHGB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 0.21

Table S18601.  Gene #1846: 'CHGB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CHGB MUTATED 1 2 9
CHGB WILD-TYPE 41 171 138

Figure S4631.  Get High-res Image Gene #1846: 'CHGB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CHGB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S18602.  Gene #1846: 'CHGB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CHGB MUTATED 3 2 3
CHGB WILD-TYPE 59 71 72
'CHGB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.49

Table S18603.  Gene #1846: 'CHGB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CHGB MUTATED 1 4 7
CHGB WILD-TYPE 69 116 93
'CHGB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S18604.  Gene #1846: 'CHGB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CHGB MUTATED 1 0 1 1 1 6 1 0 1
CHGB WILD-TYPE 40 26 29 28 38 63 19 14 21
'CHGB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.68

Table S18605.  Gene #1846: 'CHGB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CHGB MUTATED 1 3 4 4
CHGB WILD-TYPE 99 69 68 117
'CHGB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.88

Table S18606.  Gene #1846: 'CHGB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CHGB MUTATED 3 2 3 2 2
CHGB WILD-TYPE 56 73 71 117 36
'CHGB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.65

Table S18607.  Gene #1846: 'CHGB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CHGB MUTATED 3 2 2 0 4
CHGB WILD-TYPE 48 74 59 71 91
'CHGB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S18608.  Gene #1846: 'CHGB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CHGB MUTATED 1 2 0 2 1 2 1 1 1
CHGB WILD-TYPE 68 46 39 14 52 18 20 37 49
'OR14J1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18609.  Gene #1847: 'OR14J1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OR14J1 MUTATED 0 4 3
OR14J1 WILD-TYPE 42 169 144
'OR14J1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S18610.  Gene #1847: 'OR14J1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OR14J1 MUTATED 1 2 3
OR14J1 WILD-TYPE 61 71 72
'OR14J1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.57

Table S18611.  Gene #1847: 'OR14J1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OR14J1 MUTATED 0 5 3
OR14J1 WILD-TYPE 70 115 97
'OR14J1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.55

Table S18612.  Gene #1847: 'OR14J1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OR14J1 MUTATED 0 0 2 1 0 2 2 0 1
OR14J1 WILD-TYPE 41 26 28 28 39 67 18 14 21
'OR14J1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S18613.  Gene #1847: 'OR14J1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OR14J1 MUTATED 3 2 1 2
OR14J1 WILD-TYPE 97 70 71 119
'OR14J1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S18614.  Gene #1847: 'OR14J1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OR14J1 MUTATED 0 4 2 1 1
OR14J1 WILD-TYPE 59 71 72 118 37
'OR14J1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.79

Table S18615.  Gene #1847: 'OR14J1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OR14J1 MUTATED 2 3 1 0 2
OR14J1 WILD-TYPE 49 73 60 71 93
'OR14J1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 0.95

Table S18616.  Gene #1847: 'OR14J1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OR14J1 MUTATED 3 0 1 0 2 1 0 1 0
OR14J1 WILD-TYPE 66 48 38 16 51 19 21 37 50
'LYST MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.011

Table S18617.  Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
LYST MUTATED 10 1 1 2 0
LYST WILD-TYPE 22 17 45 25 23

Figure S4632.  Get High-res Image Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LYST MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.0087

Table S18618.  Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
LYST MUTATED 11 2 1
LYST WILD-TYPE 32 65 35

Figure S4633.  Get High-res Image Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LYST MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S18619.  Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
LYST MUTATED 1 5 28
LYST WILD-TYPE 41 168 119

Figure S4634.  Get High-res Image Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LYST MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.65

Table S18620.  Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
LYST MUTATED 8 4 8
LYST WILD-TYPE 54 69 67
'LYST MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.68

Table S18621.  Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
LYST MUTATED 4 10 12
LYST WILD-TYPE 66 110 88
'LYST MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S18622.  Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
LYST MUTATED 3 0 1 3 2 9 3 2 3
LYST WILD-TYPE 38 26 29 26 37 60 17 12 19
'LYST MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.54

Table S18623.  Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
LYST MUTATED 5 10 7 12
LYST WILD-TYPE 95 62 65 109
'LYST MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00062 (Fisher's exact test), Q value = 0.018

Table S18624.  Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
LYST MUTATED 3 4 13 5 9
LYST WILD-TYPE 56 71 61 114 29

Figure S4635.  Get High-res Image Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LYST MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.17

Table S18625.  Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
LYST MUTATED 1 9 9 2 10
LYST WILD-TYPE 50 67 52 69 85

Figure S4636.  Get High-res Image Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LYST MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00393 (Fisher's exact test), Q value = 0.056

Table S18626.  Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
LYST MUTATED 5 6 0 5 4 1 2 7 1
LYST WILD-TYPE 64 42 39 11 49 19 19 31 49

Figure S4637.  Get High-res Image Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LYST MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.69

Table S18627.  Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
LYST MUTATED 0 1 2 0 2 0
LYST WILD-TYPE 13 15 12 11 9 9
'LYST MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S18628.  Gene #1848: 'LYST MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
LYST MUTATED 0 1 0 1 2 1 0 0 0
LYST WILD-TYPE 11 6 7 8 6 6 11 9 5
'PPP2R2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.46

Table S18629.  Gene #1849: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PPP2R2B MUTATED 0 2 6
PPP2R2B WILD-TYPE 42 171 141
'PPP2R2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.73

Table S18630.  Gene #1849: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PPP2R2B MUTATED 2 1 4
PPP2R2B WILD-TYPE 60 72 71
'PPP2R2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18631.  Gene #1849: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PPP2R2B MUTATED 1 2 2
PPP2R2B WILD-TYPE 69 118 98
'PPP2R2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S18632.  Gene #1849: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PPP2R2B MUTATED 2 1 0 0 0 2 0 0 0
PPP2R2B WILD-TYPE 39 25 30 29 39 67 20 14 22
'PPP2R2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S18633.  Gene #1849: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PPP2R2B MUTATED 1 3 3 1
PPP2R2B WILD-TYPE 99 69 69 120
'PPP2R2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00149 (Fisher's exact test), Q value = 0.032

Table S18634.  Gene #1849: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PPP2R2B MUTATED 1 0 6 0 1
PPP2R2B WILD-TYPE 58 75 68 119 37

Figure S4638.  Get High-res Image Gene #1849: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPP2R2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S18635.  Gene #1849: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PPP2R2B MUTATED 1 3 2 1 1
PPP2R2B WILD-TYPE 50 73 59 70 94
'PPP2R2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0562 (Fisher's exact test), Q value = 0.25

Table S18636.  Gene #1849: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PPP2R2B MUTATED 1 3 0 2 1 0 1 0 0
PPP2R2B WILD-TYPE 68 45 39 14 52 20 20 38 50
'PPP2R2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S18637.  Gene #1849: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PPP2R2B MUTATED 0 0 1 0 2 0
PPP2R2B WILD-TYPE 13 16 13 11 9 9
'PPP2R2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S18638.  Gene #1849: 'PPP2R2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PPP2R2B MUTATED 0 0 0 2 1 0 0 0 0
PPP2R2B WILD-TYPE 11 7 7 7 7 7 11 9 5
'ACTBL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S18639.  Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ACTBL2 MUTATED 8 0 0 0 0
ACTBL2 WILD-TYPE 24 18 46 27 23

Figure S4639.  Get High-res Image Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ACTBL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00056 (Fisher's exact test), Q value = 0.017

Table S18640.  Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ACTBL2 MUTATED 7 0 1
ACTBL2 WILD-TYPE 36 67 35

Figure S4640.  Get High-res Image Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ACTBL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00552 (Fisher's exact test), Q value = 0.07

Table S18641.  Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ACTBL2 MUTATED 1 2 12
ACTBL2 WILD-TYPE 41 171 135

Figure S4641.  Get High-res Image Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ACTBL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.77

Table S18642.  Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ACTBL2 MUTATED 3 1 4
ACTBL2 WILD-TYPE 59 72 71
'ACTBL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S18643.  Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ACTBL2 MUTATED 3 3 7
ACTBL2 WILD-TYPE 67 117 93
'ACTBL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S18644.  Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ACTBL2 MUTATED 2 0 1 1 3 3 2 1 0
ACTBL2 WILD-TYPE 39 26 29 28 36 66 18 13 22
'ACTBL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.48

Table S18645.  Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ACTBL2 MUTATED 1 3 4 8
ACTBL2 WILD-TYPE 99 69 68 113
'ACTBL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00033 (Fisher's exact test), Q value = 0.012

Table S18646.  Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ACTBL2 MUTATED 2 1 5 1 7
ACTBL2 WILD-TYPE 57 74 69 118 31

Figure S4642.  Get High-res Image Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ACTBL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S18647.  Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ACTBL2 MUTATED 2 4 2 2 5
ACTBL2 WILD-TYPE 49 72 59 69 90
'ACTBL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00246 (Fisher's exact test), Q value = 0.042

Table S18648.  Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ACTBL2 MUTATED 2 2 0 3 2 0 0 6 0
ACTBL2 WILD-TYPE 67 46 39 13 51 20 21 32 50

Figure S4643.  Get High-res Image Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ACTBL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00631 (Fisher's exact test), Q value = 0.074

Table S18649.  Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ACTBL2 MUTATED 0 0 0 0 3 0
ACTBL2 WILD-TYPE 13 16 14 11 8 9

Figure S4644.  Get High-res Image Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ACTBL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.46

Table S18650.  Gene #1850: 'ACTBL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ACTBL2 MUTATED 0 0 0 2 1 0 0 0 0
ACTBL2 WILD-TYPE 11 7 7 7 7 7 11 9 5
'C9ORF41 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 0.34

Table S18651.  Gene #1851: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
C9ORF41 MUTATED 3 0 0 1 0
C9ORF41 WILD-TYPE 29 18 46 26 23
'C9ORF41 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.49

Table S18652.  Gene #1851: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
C9ORF41 MUTATED 3 1 0
C9ORF41 WILD-TYPE 40 66 36
'C9ORF41 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.054 (Fisher's exact test), Q value = 0.25

Table S18653.  Gene #1851: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
C9ORF41 MUTATED 0 2 8
C9ORF41 WILD-TYPE 42 171 139
'C9ORF41 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18654.  Gene #1851: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
C9ORF41 MUTATED 2 2 3
C9ORF41 WILD-TYPE 60 71 72
'C9ORF41 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.49

Table S18655.  Gene #1851: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
C9ORF41 MUTATED 0 4 5
C9ORF41 WILD-TYPE 70 116 95
'C9ORF41 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S18656.  Gene #1851: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
C9ORF41 MUTATED 1 1 2 1 1 3 0 0 0
C9ORF41 WILD-TYPE 40 25 28 28 38 66 20 14 22
'C9ORF41 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.91

Table S18657.  Gene #1851: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
C9ORF41 MUTATED 1 3 2 4
C9ORF41 WILD-TYPE 99 69 70 117
'C9ORF41 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.89

Table S18658.  Gene #1851: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
C9ORF41 MUTATED 2 3 1 2 2
C9ORF41 WILD-TYPE 57 72 73 117 36
'C9ORF41 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.8

Table S18659.  Gene #1851: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
C9ORF41 MUTATED 0 2 2 1 5
C9ORF41 WILD-TYPE 51 74 59 70 90
'C9ORF41 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.82

Table S18660.  Gene #1851: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
C9ORF41 MUTATED 1 2 1 1 0 1 1 2 1
C9ORF41 WILD-TYPE 68 46 38 15 53 19 20 36 49
'BATF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 0.34

Table S18661.  Gene #1852: 'BATF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BATF3 MUTATED 1 0 3
BATF3 WILD-TYPE 41 173 144
'BATF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S18662.  Gene #1852: 'BATF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BATF3 MUTATED 2 0 1
BATF3 WILD-TYPE 60 73 74
'BATF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S18663.  Gene #1852: 'BATF3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BATF3 MUTATED 1 1 2
BATF3 WILD-TYPE 69 119 98
'BATF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S18664.  Gene #1852: 'BATF3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BATF3 MUTATED 1 0 0 1 0 2 0 0 0
BATF3 WILD-TYPE 40 26 30 28 39 67 20 14 22
'BATF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.28

Table S18665.  Gene #1852: 'BATF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BATF3 MUTATED 0 3 0 1
BATF3 WILD-TYPE 100 69 72 120
'BATF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S18666.  Gene #1852: 'BATF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BATF3 MUTATED 0 1 2 1 0
BATF3 WILD-TYPE 59 74 72 118 38
'BATF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.94

Table S18667.  Gene #1852: 'BATF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BATF3 MUTATED 0 2 1 0 1
BATF3 WILD-TYPE 51 74 60 71 94
'BATF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00398 (Fisher's exact test), Q value = 0.057

Table S18668.  Gene #1852: 'BATF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BATF3 MUTATED 0 0 0 2 0 0 1 0 1
BATF3 WILD-TYPE 69 48 39 14 53 20 20 38 49

Figure S4645.  Get High-res Image Gene #1852: 'BATF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SEC23IP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0748 (Fisher's exact test), Q value = 0.3

Table S18669.  Gene #1853: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SEC23IP MUTATED 3 0 0 2 0
SEC23IP WILD-TYPE 29 18 46 25 23
'SEC23IP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0672 (Fisher's exact test), Q value = 0.28

Table S18670.  Gene #1853: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SEC23IP MUTATED 4 1 0
SEC23IP WILD-TYPE 39 66 36
'SEC23IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.25

Table S18671.  Gene #1853: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SEC23IP MUTATED 0 5 11
SEC23IP WILD-TYPE 42 168 136
'SEC23IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S18672.  Gene #1853: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SEC23IP MUTATED 5 4 2
SEC23IP WILD-TYPE 57 69 73
'SEC23IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.66

Table S18673.  Gene #1853: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SEC23IP MUTATED 1 8 5
SEC23IP WILD-TYPE 69 112 95
'SEC23IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.92

Table S18674.  Gene #1853: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SEC23IP MUTATED 2 1 3 1 0 3 1 1 2
SEC23IP WILD-TYPE 39 25 27 28 39 66 19 13 20
'SEC23IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.92

Table S18675.  Gene #1853: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SEC23IP MUTATED 3 2 5 6
SEC23IP WILD-TYPE 97 70 67 115
'SEC23IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.47

Table S18676.  Gene #1853: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SEC23IP MUTATED 3 3 4 2 4
SEC23IP WILD-TYPE 56 72 70 117 34
'SEC23IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.94

Table S18677.  Gene #1853: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SEC23IP MUTATED 2 5 2 1 4
SEC23IP WILD-TYPE 49 71 59 70 91
'SEC23IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.76

Table S18678.  Gene #1853: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SEC23IP MUTATED 2 3 0 2 3 1 0 2 1
SEC23IP WILD-TYPE 67 45 39 14 50 19 21 36 49
'SEC23IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00618 (Fisher's exact test), Q value = 0.074

Table S18679.  Gene #1853: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SEC23IP MUTATED 0 0 0 0 3 0
SEC23IP WILD-TYPE 13 16 14 11 8 9

Figure S4646.  Get High-res Image Gene #1853: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SEC23IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S18680.  Gene #1853: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SEC23IP MUTATED 0 0 0 1 1 0 1 0 0
SEC23IP WILD-TYPE 11 7 7 8 7 7 10 9 5
'GIMAP5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S18681.  Gene #1854: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GIMAP5 MUTATED 2 0 1 1 0
GIMAP5 WILD-TYPE 30 18 45 26 23
'GIMAP5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.5

Table S18682.  Gene #1854: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GIMAP5 MUTATED 3 1 0
GIMAP5 WILD-TYPE 40 66 36
'GIMAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.91

Table S18683.  Gene #1854: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GIMAP5 MUTATED 1 2 3
GIMAP5 WILD-TYPE 41 171 144
'GIMAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18684.  Gene #1854: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GIMAP5 MUTATED 1 3 2
GIMAP5 WILD-TYPE 69 117 98
'GIMAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S18685.  Gene #1854: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GIMAP5 MUTATED 1 0 1 0 1 2 0 0 1
GIMAP5 WILD-TYPE 40 26 29 29 38 67 20 14 21
'GIMAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S18686.  Gene #1854: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GIMAP5 MUTATED 1 1 0 4
GIMAP5 WILD-TYPE 99 71 72 117
'GIMAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0461 (Fisher's exact test), Q value = 0.23

Table S18687.  Gene #1854: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GIMAP5 MUTATED 1 0 1 1 3
GIMAP5 WILD-TYPE 58 75 73 118 35

Figure S4647.  Get High-res Image Gene #1854: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GIMAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S18688.  Gene #1854: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GIMAP5 MUTATED 1 1 0 2 1
GIMAP5 WILD-TYPE 50 75 61 69 94
'GIMAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S18689.  Gene #1854: 'GIMAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GIMAP5 MUTATED 0 1 0 1 1 0 0 1 1
GIMAP5 WILD-TYPE 69 47 39 15 52 20 21 37 49
'FAM91A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S18690.  Gene #1855: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM91A1 MUTATED 0 3 6
FAM91A1 WILD-TYPE 42 170 141
'FAM91A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.77

Table S18691.  Gene #1855: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM91A1 MUTATED 3 1 4
FAM91A1 WILD-TYPE 59 72 71
'FAM91A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.57

Table S18692.  Gene #1855: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM91A1 MUTATED 0 5 3
FAM91A1 WILD-TYPE 70 115 97
'FAM91A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S18693.  Gene #1855: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM91A1 MUTATED 1 1 1 2 0 1 2 0 0
FAM91A1 WILD-TYPE 40 25 29 27 39 68 18 14 22
'FAM91A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.98

Table S18694.  Gene #1855: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM91A1 MUTATED 3 3 2 2
FAM91A1 WILD-TYPE 97 69 70 119
'FAM91A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S18695.  Gene #1855: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM91A1 MUTATED 1 4 3 1 1
FAM91A1 WILD-TYPE 58 71 71 118 37
'FAM91A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S18696.  Gene #1855: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM91A1 MUTATED 2 2 2 1 3
FAM91A1 WILD-TYPE 49 74 59 70 92
'FAM91A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S18697.  Gene #1855: 'FAM91A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM91A1 MUTATED 3 1 0 1 2 1 0 1 1
FAM91A1 WILD-TYPE 66 47 39 15 51 19 21 37 49
'OSBPL5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0535 (Fisher's exact test), Q value = 0.25

Table S18698.  Gene #1856: 'OSBPL5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
OSBPL5 MUTATED 3 0 0 0 0
OSBPL5 WILD-TYPE 29 18 46 27 23
'OSBPL5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 0.21

Table S18699.  Gene #1856: 'OSBPL5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
OSBPL5 MUTATED 3 0 0
OSBPL5 WILD-TYPE 40 67 36

Figure S4648.  Get High-res Image Gene #1856: 'OSBPL5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'OSBPL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 0.26

Table S18700.  Gene #1856: 'OSBPL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
OSBPL5 MUTATED 0 4 10
OSBPL5 WILD-TYPE 42 169 137
'OSBPL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.92

Table S18701.  Gene #1856: 'OSBPL5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
OSBPL5 MUTATED 4 2 4
OSBPL5 WILD-TYPE 58 71 71
'OSBPL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.056 (Fisher's exact test), Q value = 0.25

Table S18702.  Gene #1856: 'OSBPL5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
OSBPL5 MUTATED 0 4 7
OSBPL5 WILD-TYPE 70 116 93
'OSBPL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.5

Table S18703.  Gene #1856: 'OSBPL5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
OSBPL5 MUTATED 0 0 1 3 0 5 1 0 1
OSBPL5 WILD-TYPE 41 26 29 26 39 64 19 14 21
'OSBPL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.52

Table S18704.  Gene #1856: 'OSBPL5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
OSBPL5 MUTATED 2 2 6 4
OSBPL5 WILD-TYPE 98 70 66 117
'OSBPL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 0.12

Table S18705.  Gene #1856: 'OSBPL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
OSBPL5 MUTATED 1 2 7 1 3
OSBPL5 WILD-TYPE 58 73 67 118 35

Figure S4649.  Get High-res Image Gene #1856: 'OSBPL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OSBPL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S18706.  Gene #1856: 'OSBPL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
OSBPL5 MUTATED 2 4 3 3 2
OSBPL5 WILD-TYPE 49 72 58 68 93
'OSBPL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S18707.  Gene #1856: 'OSBPL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
OSBPL5 MUTATED 2 3 2 0 3 1 0 3 0
OSBPL5 WILD-TYPE 67 45 37 16 50 19 21 35 50
'OSBPL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.58

Table S18708.  Gene #1856: 'OSBPL5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
OSBPL5 MUTATED 1 0 2 0 2 0
OSBPL5 WILD-TYPE 12 16 12 11 9 9
'OSBPL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.8

Table S18709.  Gene #1856: 'OSBPL5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
OSBPL5 MUTATED 0 0 0 0 2 1 1 1 0
OSBPL5 WILD-TYPE 11 7 7 9 6 6 10 8 5
'TTLL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S18710.  Gene #1857: 'TTLL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TTLL5 MUTATED 1 1 9
TTLL5 WILD-TYPE 41 172 138

Figure S4650.  Get High-res Image Gene #1857: 'TTLL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TTLL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S18711.  Gene #1857: 'TTLL5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TTLL5 MUTATED 4 1 4
TTLL5 WILD-TYPE 58 72 71
'TTLL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.67

Table S18712.  Gene #1857: 'TTLL5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TTLL5 MUTATED 1 2 5
TTLL5 WILD-TYPE 69 118 95
'TTLL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S18713.  Gene #1857: 'TTLL5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TTLL5 MUTATED 1 0 0 1 2 4 0 0 0
TTLL5 WILD-TYPE 40 26 30 28 37 65 20 14 22
'TTLL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.73

Table S18714.  Gene #1857: 'TTLL5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TTLL5 MUTATED 2 4 3 2
TTLL5 WILD-TYPE 98 68 69 119
'TTLL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0228 (Fisher's exact test), Q value = 0.16

Table S18715.  Gene #1857: 'TTLL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TTLL5 MUTATED 1 3 5 0 2
TTLL5 WILD-TYPE 58 72 69 119 36

Figure S4651.  Get High-res Image Gene #1857: 'TTLL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TTLL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.8

Table S18716.  Gene #1857: 'TTLL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TTLL5 MUTATED 0 4 2 1 4
TTLL5 WILD-TYPE 51 72 59 70 91
'TTLL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.95

Table S18717.  Gene #1857: 'TTLL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TTLL5 MUTATED 2 2 0 1 2 0 0 3 1
TTLL5 WILD-TYPE 67 46 39 15 51 20 21 35 49
'TMEM171 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.19

Table S18718.  Gene #1858: 'TMEM171 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMEM171 MUTATED 0 0 5
TMEM171 WILD-TYPE 42 173 142

Figure S4652.  Get High-res Image Gene #1858: 'TMEM171 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TMEM171 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S18719.  Gene #1858: 'TMEM171 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TMEM171 MUTATED 2 0 1
TMEM171 WILD-TYPE 60 73 74
'TMEM171 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0881 (Fisher's exact test), Q value = 0.32

Table S18720.  Gene #1858: 'TMEM171 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TMEM171 MUTATED 2 0 3
TMEM171 WILD-TYPE 68 120 97
'TMEM171 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S18721.  Gene #1858: 'TMEM171 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TMEM171 MUTATED 0 1 0 0 1 2 1 0 0
TMEM171 WILD-TYPE 41 25 30 29 38 67 19 14 22
'TMEM171 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S18722.  Gene #1858: 'TMEM171 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMEM171 MUTATED 0 3 1 1
TMEM171 WILD-TYPE 100 69 71 120
'TMEM171 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.9

Table S18723.  Gene #1858: 'TMEM171 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMEM171 MUTATED 0 1 2 1 1
TMEM171 WILD-TYPE 59 74 72 118 37
'TMEM171 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.61

Table S18724.  Gene #1858: 'TMEM171 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMEM171 MUTATED 0 2 0 0 3
TMEM171 WILD-TYPE 51 74 61 71 92
'TMEM171 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S18725.  Gene #1858: 'TMEM171 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMEM171 MUTATED 1 1 0 0 0 0 1 1 1
TMEM171 WILD-TYPE 68 47 39 16 53 20 20 37 49
'GPSM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00823 (Fisher's exact test), Q value = 0.085

Table S18726.  Gene #1859: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GPSM2 MUTATED 2 1 9
GPSM2 WILD-TYPE 40 172 138

Figure S4653.  Get High-res Image Gene #1859: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GPSM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.46

Table S18727.  Gene #1859: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GPSM2 MUTATED 5 1 4
GPSM2 WILD-TYPE 57 72 71
'GPSM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S18728.  Gene #1859: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GPSM2 MUTATED 3 4 4
GPSM2 WILD-TYPE 67 116 96
'GPSM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S18729.  Gene #1859: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GPSM2 MUTATED 2 1 2 2 2 2 0 0 0
GPSM2 WILD-TYPE 39 25 28 27 37 67 20 14 22
'GPSM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.46

Table S18730.  Gene #1859: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GPSM2 MUTATED 1 5 3 3
GPSM2 WILD-TYPE 99 67 69 118
'GPSM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.49

Table S18731.  Gene #1859: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GPSM2 MUTATED 1 2 6 2 1
GPSM2 WILD-TYPE 58 73 68 117 37
'GPSM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 0.3

Table S18732.  Gene #1859: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GPSM2 MUTATED 0 5 2 0 5
GPSM2 WILD-TYPE 51 71 59 71 90
'GPSM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S18733.  Gene #1859: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GPSM2 MUTATED 3 2 1 1 0 1 0 2 2
GPSM2 WILD-TYPE 66 46 38 15 53 19 21 36 48
'GPSM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18734.  Gene #1859: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GPSM2 MUTATED 1 1 1 0 0 0
GPSM2 WILD-TYPE 12 15 13 11 11 9
'GPSM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18735.  Gene #1859: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GPSM2 MUTATED 1 0 0 1 0 0 1 0 0
GPSM2 WILD-TYPE 10 7 7 8 8 7 10 9 5
'ANKRD32 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0546 (Fisher's exact test), Q value = 0.25

Table S18736.  Gene #1860: 'ANKRD32 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ANKRD32 MUTATED 3 0 0 0 0
ANKRD32 WILD-TYPE 29 18 46 27 23
'ANKRD32 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0391 (Fisher's exact test), Q value = 0.21

Table S18737.  Gene #1860: 'ANKRD32 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ANKRD32 MUTATED 3 0 0
ANKRD32 WILD-TYPE 40 67 36

Figure S4654.  Get High-res Image Gene #1860: 'ANKRD32 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ANKRD32 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00302 (Fisher's exact test), Q value = 0.048

Table S18738.  Gene #1860: 'ANKRD32 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ANKRD32 MUTATED 1 1 11
ANKRD32 WILD-TYPE 41 172 136

Figure S4655.  Get High-res Image Gene #1860: 'ANKRD32 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ANKRD32 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S18739.  Gene #1860: 'ANKRD32 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ANKRD32 MUTATED 5 1 5
ANKRD32 WILD-TYPE 57 72 70
'ANKRD32 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.3

Table S18740.  Gene #1860: 'ANKRD32 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ANKRD32 MUTATED 1 3 8
ANKRD32 WILD-TYPE 69 117 92
'ANKRD32 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.63

Table S18741.  Gene #1860: 'ANKRD32 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ANKRD32 MUTATED 1 0 0 1 1 7 1 1 0
ANKRD32 WILD-TYPE 40 26 30 28 38 62 19 13 22
'ANKRD32 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S18742.  Gene #1860: 'ANKRD32 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ANKRD32 MUTATED 3 3 4 3
ANKRD32 WILD-TYPE 97 69 68 118
'ANKRD32 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.14

Table S18743.  Gene #1860: 'ANKRD32 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ANKRD32 MUTATED 2 4 4 0 3
ANKRD32 WILD-TYPE 57 71 70 119 35

Figure S4656.  Get High-res Image Gene #1860: 'ANKRD32 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKRD32 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.91

Table S18744.  Gene #1860: 'ANKRD32 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ANKRD32 MUTATED 0 4 2 3 4
ANKRD32 WILD-TYPE 51 72 59 68 91
'ANKRD32 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 0.86

Table S18745.  Gene #1860: 'ANKRD32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ANKRD32 MUTATED 4 4 0 0 1 0 1 2 1
ANKRD32 WILD-TYPE 65 44 39 16 52 20 20 36 49
'ANKRD32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S18746.  Gene #1860: 'ANKRD32 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ANKRD32 MUTATED 1 0 1 1 1 0
ANKRD32 WILD-TYPE 12 16 13 10 10 9
'ANKRD32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.92

Table S18747.  Gene #1860: 'ANKRD32 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ANKRD32 MUTATED 0 0 0 0 1 0 2 1 0
ANKRD32 WILD-TYPE 11 7 7 9 7 7 9 8 5
'HDAC11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0387 (Fisher's exact test), Q value = 0.21

Table S18748.  Gene #1861: 'HDAC11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HDAC11 MUTATED 0 1 7
HDAC11 WILD-TYPE 42 172 140

Figure S4657.  Get High-res Image Gene #1861: 'HDAC11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HDAC11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.73

Table S18749.  Gene #1861: 'HDAC11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HDAC11 MUTATED 2 1 4
HDAC11 WILD-TYPE 60 72 71
'HDAC11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S18750.  Gene #1861: 'HDAC11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HDAC11 MUTATED 0 3 4
HDAC11 WILD-TYPE 70 117 96
'HDAC11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.44

Table S18751.  Gene #1861: 'HDAC11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HDAC11 MUTATED 0 0 0 2 0 3 2 0 0
HDAC11 WILD-TYPE 41 26 30 27 39 66 18 14 22
'HDAC11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S18752.  Gene #1861: 'HDAC11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HDAC11 MUTATED 1 4 2 1
HDAC11 WILD-TYPE 99 68 70 120
'HDAC11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00166 (Fisher's exact test), Q value = 0.034

Table S18753.  Gene #1861: 'HDAC11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HDAC11 MUTATED 1 0 6 0 1
HDAC11 WILD-TYPE 58 75 68 119 37

Figure S4658.  Get High-res Image Gene #1861: 'HDAC11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HDAC11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00839 (Fisher's exact test), Q value = 0.086

Table S18754.  Gene #1861: 'HDAC11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HDAC11 MUTATED 1 6 0 0 1
HDAC11 WILD-TYPE 50 70 61 71 94

Figure S4659.  Get High-res Image Gene #1861: 'HDAC11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HDAC11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S18755.  Gene #1861: 'HDAC11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HDAC11 MUTATED 1 2 0 2 2 0 0 1 0
HDAC11 WILD-TYPE 68 46 39 14 51 20 21 37 50
'BUB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S18756.  Gene #1862: 'BUB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BUB1 MUTATED 1 0 0 2 0
BUB1 WILD-TYPE 31 18 46 25 23
'BUB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18757.  Gene #1862: 'BUB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BUB1 MUTATED 1 1 1
BUB1 WILD-TYPE 42 66 35
'BUB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0951 (Fisher's exact test), Q value = 0.34

Table S18758.  Gene #1862: 'BUB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BUB1 MUTATED 1 3 9
BUB1 WILD-TYPE 41 170 138
'BUB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S18759.  Gene #1862: 'BUB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
BUB1 MUTATED 2 3 4
BUB1 WILD-TYPE 60 70 71
'BUB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.72

Table S18760.  Gene #1862: 'BUB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BUB1 MUTATED 2 3 6
BUB1 WILD-TYPE 68 117 94
'BUB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S18761.  Gene #1862: 'BUB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BUB1 MUTATED 1 1 1 1 2 5 0 0 0
BUB1 WILD-TYPE 40 25 29 28 37 64 20 14 22
'BUB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S18762.  Gene #1862: 'BUB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BUB1 MUTATED 2 5 3 3
BUB1 WILD-TYPE 98 67 69 118
'BUB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.63

Table S18763.  Gene #1862: 'BUB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BUB1 MUTATED 1 4 5 2 1
BUB1 WILD-TYPE 58 71 69 117 37
'BUB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S18764.  Gene #1862: 'BUB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BUB1 MUTATED 1 5 2 1 3
BUB1 WILD-TYPE 50 71 59 70 92
'BUB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.49

Table S18765.  Gene #1862: 'BUB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BUB1 MUTATED 2 2 0 2 2 2 1 0 1
BUB1 WILD-TYPE 67 46 39 14 51 18 20 38 49
'KMO MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.61

Table S18766.  Gene #1863: 'KMO MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KMO MUTATED 2 0 0 1 0
KMO WILD-TYPE 30 18 46 26 23
'KMO MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S18767.  Gene #1863: 'KMO MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KMO MUTATED 2 0 1
KMO WILD-TYPE 41 67 35
'KMO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 0.21

Table S18768.  Gene #1863: 'KMO MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KMO MUTATED 1 2 9
KMO WILD-TYPE 41 171 138

Figure S4660.  Get High-res Image Gene #1863: 'KMO MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KMO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.94

Table S18769.  Gene #1863: 'KMO MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KMO MUTATED 4 2 3
KMO WILD-TYPE 58 71 72
'KMO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.99

Table S18770.  Gene #1863: 'KMO MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KMO MUTATED 1 4 4
KMO WILD-TYPE 69 116 96
'KMO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S18771.  Gene #1863: 'KMO MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KMO MUTATED 2 1 0 2 1 3 0 0 0
KMO WILD-TYPE 39 25 30 27 38 66 20 14 22
'KMO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.93

Table S18772.  Gene #1863: 'KMO MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KMO MUTATED 2 2 4 4
KMO WILD-TYPE 98 70 68 117
'KMO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 0.85

Table S18773.  Gene #1863: 'KMO MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KMO MUTATED 2 2 4 2 2
KMO WILD-TYPE 57 73 70 117 36
'KMO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S18774.  Gene #1863: 'KMO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KMO MUTATED 0 3 2 3 3
KMO WILD-TYPE 51 73 59 68 92
'KMO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S18775.  Gene #1863: 'KMO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KMO MUTATED 2 3 1 0 2 0 1 1 1
KMO WILD-TYPE 67 45 38 16 51 20 20 37 49
'KMO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S18776.  Gene #1863: 'KMO MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KMO MUTATED 0 0 2 0 1 1
KMO WILD-TYPE 13 16 12 11 10 8
'KMO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.992 (Fisher's exact test), Q value = 1

Table S18777.  Gene #1863: 'KMO MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KMO MUTATED 1 0 0 0 1 0 1 1 0
KMO WILD-TYPE 10 7 7 9 7 7 10 8 5
'COL6A3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.15

Table S18778.  Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
COL6A3 MUTATED 10 3 3 3 1
COL6A3 WILD-TYPE 22 15 43 24 22

Figure S4661.  Get High-res Image Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'COL6A3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0301 (Fisher's exact test), Q value = 0.18

Table S18779.  Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
COL6A3 MUTATED 11 7 2
COL6A3 WILD-TYPE 32 60 34

Figure S4662.  Get High-res Image Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'COL6A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S18780.  Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
COL6A3 MUTATED 0 13 38
COL6A3 WILD-TYPE 42 160 109

Figure S4663.  Get High-res Image Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'COL6A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 0.18

Table S18781.  Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
COL6A3 MUTATED 14 5 12
COL6A3 WILD-TYPE 48 68 63

Figure S4664.  Get High-res Image Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'COL6A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0712 (Fisher's exact test), Q value = 0.29

Table S18782.  Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
COL6A3 MUTATED 8 14 22
COL6A3 WILD-TYPE 62 106 78
'COL6A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0041 (Fisher's exact test), Q value = 0.058

Table S18783.  Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
COL6A3 MUTATED 4 3 5 3 3 21 0 4 1
COL6A3 WILD-TYPE 37 23 25 26 36 48 20 10 21

Figure S4665.  Get High-res Image Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'COL6A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0416 (Fisher's exact test), Q value = 0.22

Table S18784.  Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
COL6A3 MUTATED 9 17 7 18
COL6A3 WILD-TYPE 91 55 65 103

Figure S4666.  Get High-res Image Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'COL6A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0059

Table S18785.  Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
COL6A3 MUTATED 3 8 19 9 12
COL6A3 WILD-TYPE 56 67 55 110 26

Figure S4667.  Get High-res Image Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'COL6A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.14

Table S18786.  Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
COL6A3 MUTATED 2 15 10 5 17
COL6A3 WILD-TYPE 49 61 51 66 78

Figure S4668.  Get High-res Image Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'COL6A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.12

Table S18787.  Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
COL6A3 MUTATED 10 10 4 6 3 1 3 9 3
COL6A3 WILD-TYPE 59 38 35 10 50 19 18 29 47

Figure S4669.  Get High-res Image Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COL6A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0769 (Fisher's exact test), Q value = 0.3

Table S18788.  Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
COL6A3 MUTATED 3 1 2 1 5 0
COL6A3 WILD-TYPE 10 15 12 10 6 9
'COL6A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.5

Table S18789.  Gene #1864: 'COL6A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
COL6A3 MUTATED 0 1 1 4 1 2 2 0 1
COL6A3 WILD-TYPE 11 6 6 5 7 5 9 9 4
'FKBP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S18790.  Gene #1865: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FKBP5 MUTATED 0 1 5
FKBP5 WILD-TYPE 42 172 142
'FKBP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S18791.  Gene #1865: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FKBP5 MUTATED 2 1 2
FKBP5 WILD-TYPE 60 72 73
'FKBP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S18792.  Gene #1865: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FKBP5 MUTATED 0 1 4
FKBP5 WILD-TYPE 70 119 96
'FKBP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S18793.  Gene #1865: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FKBP5 MUTATED 2 1 0 0 0 2 0 0 0
FKBP5 WILD-TYPE 39 25 30 29 39 67 20 14 22
'FKBP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 0.34

Table S18794.  Gene #1865: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FKBP5 MUTATED 0 3 2 1
FKBP5 WILD-TYPE 100 69 70 120
'FKBP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0415 (Fisher's exact test), Q value = 0.21

Table S18795.  Gene #1865: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FKBP5 MUTATED 2 0 3 0 1
FKBP5 WILD-TYPE 57 75 71 119 37

Figure S4670.  Get High-res Image Gene #1865: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FKBP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.53

Table S18796.  Gene #1865: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FKBP5 MUTATED 0 3 2 0 1
FKBP5 WILD-TYPE 51 73 59 71 94
'FKBP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0684 (Fisher's exact test), Q value = 0.28

Table S18797.  Gene #1865: 'FKBP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FKBP5 MUTATED 1 2 0 2 0 0 0 1 0
FKBP5 WILD-TYPE 68 46 39 14 53 20 21 37 50
'ASPN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.1

Table S18798.  Gene #1866: 'ASPN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ASPN MUTATED 0 0 6
ASPN WILD-TYPE 42 173 141

Figure S4671.  Get High-res Image Gene #1866: 'ASPN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ASPN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.19

Table S18799.  Gene #1866: 'ASPN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ASPN MUTATED 1 0 5
ASPN WILD-TYPE 61 73 70

Figure S4672.  Get High-res Image Gene #1866: 'ASPN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ASPN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18800.  Gene #1866: 'ASPN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ASPN MUTATED 2 3 2
ASPN WILD-TYPE 68 117 98
'ASPN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.43

Table S18801.  Gene #1866: 'ASPN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ASPN MUTATED 0 0 0 2 0 3 2 0 0
ASPN WILD-TYPE 41 26 30 27 39 66 18 14 22
'ASPN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00132 (Fisher's exact test), Q value = 0.03

Table S18802.  Gene #1866: 'ASPN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ASPN MUTATED 0 5 2 0
ASPN WILD-TYPE 100 67 70 121

Figure S4673.  Get High-res Image Gene #1866: 'ASPN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ASPN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.21

Table S18803.  Gene #1866: 'ASPN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ASPN MUTATED 0 1 5 1 0
ASPN WILD-TYPE 59 74 69 118 38

Figure S4674.  Get High-res Image Gene #1866: 'ASPN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ASPN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00286 (Fisher's exact test), Q value = 0.046

Table S18804.  Gene #1866: 'ASPN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ASPN MUTATED 0 6 0 0 1
ASPN WILD-TYPE 51 70 61 71 94

Figure S4675.  Get High-res Image Gene #1866: 'ASPN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ASPN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.74

Table S18805.  Gene #1866: 'ASPN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ASPN MUTATED 3 1 0 1 1 1 0 0 0
ASPN WILD-TYPE 66 47 39 15 52 19 21 38 50
'RARS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.61

Table S18806.  Gene #1867: 'RARS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RARS2 MUTATED 2 0 0 1 0
RARS2 WILD-TYPE 30 18 46 26 23
'RARS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.44

Table S18807.  Gene #1867: 'RARS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RARS2 MUTATED 2 0 1
RARS2 WILD-TYPE 41 67 35
'RARS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 0.31

Table S18808.  Gene #1867: 'RARS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RARS2 MUTATED 0 1 6
RARS2 WILD-TYPE 42 172 141
'RARS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.36

Table S18809.  Gene #1867: 'RARS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RARS2 MUTATED 3 0 1
RARS2 WILD-TYPE 59 73 74
'RARS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.62

Table S18810.  Gene #1867: 'RARS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RARS2 MUTATED 0 1 3
RARS2 WILD-TYPE 70 119 97
'RARS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18811.  Gene #1867: 'RARS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RARS2 MUTATED 1 0 0 0 1 2 0 0 0
RARS2 WILD-TYPE 40 26 30 29 38 67 20 14 22
'RARS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S18812.  Gene #1867: 'RARS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RARS2 MUTATED 1 2 1 3
RARS2 WILD-TYPE 99 70 71 118
'RARS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.73

Table S18813.  Gene #1867: 'RARS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RARS2 MUTATED 1 2 1 1 2
RARS2 WILD-TYPE 58 73 73 118 36
'RARS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S18814.  Gene #1867: 'RARS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RARS2 MUTATED 0 2 1 1 2
RARS2 WILD-TYPE 51 74 60 70 93
'RARS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S18815.  Gene #1867: 'RARS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RARS2 MUTATED 1 1 0 0 2 0 0 1 1
RARS2 WILD-TYPE 68 47 39 16 51 20 21 37 49
'SMPDL3B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18816.  Gene #1868: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SMPDL3B MUTATED 1 4 4
SMPDL3B WILD-TYPE 41 169 143
'SMPDL3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.14

Table S18817.  Gene #1868: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SMPDL3B MUTATED 0 1 6
SMPDL3B WILD-TYPE 62 72 69

Figure S4676.  Get High-res Image Gene #1868: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SMPDL3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S18818.  Gene #1868: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SMPDL3B MUTATED 1 4 3
SMPDL3B WILD-TYPE 69 116 97
'SMPDL3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S18819.  Gene #1868: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SMPDL3B MUTATED 1 0 1 1 2 2 1 0 0
SMPDL3B WILD-TYPE 40 26 29 28 37 67 19 14 22
'SMPDL3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.72

Table S18820.  Gene #1868: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SMPDL3B MUTATED 1 3 3 2
SMPDL3B WILD-TYPE 99 69 69 119
'SMPDL3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S18821.  Gene #1868: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SMPDL3B MUTATED 1 2 4 1 1
SMPDL3B WILD-TYPE 58 73 70 118 37
'SMPDL3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.36

Table S18822.  Gene #1868: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SMPDL3B MUTATED 3 4 0 1 1
SMPDL3B WILD-TYPE 48 72 61 70 94
'SMPDL3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.77

Table S18823.  Gene #1868: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SMPDL3B MUTATED 2 1 0 2 1 1 0 1 1
SMPDL3B WILD-TYPE 67 47 39 14 52 19 21 37 49
'SMPDL3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00978 (Fisher's exact test), Q value = 0.093

Table S18824.  Gene #1868: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SMPDL3B MUTATED 0 0 0 0 3 1
SMPDL3B WILD-TYPE 13 16 14 11 8 8

Figure S4677.  Get High-res Image Gene #1868: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SMPDL3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.991 (Fisher's exact test), Q value = 1

Table S18825.  Gene #1868: 'SMPDL3B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SMPDL3B MUTATED 1 0 0 1 1 0 1 0 0
SMPDL3B WILD-TYPE 10 7 7 8 7 7 10 9 5
'SEMA3C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00809 (Fisher's exact test), Q value = 0.084

Table S18826.  Gene #1869: 'SEMA3C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SEMA3C MUTATED 2 1 9
SEMA3C WILD-TYPE 40 172 138

Figure S4678.  Get High-res Image Gene #1869: 'SEMA3C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SEMA3C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.13

Table S18827.  Gene #1869: 'SEMA3C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SEMA3C MUTATED 3 0 7
SEMA3C WILD-TYPE 59 73 68

Figure S4679.  Get High-res Image Gene #1869: 'SEMA3C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SEMA3C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18828.  Gene #1869: 'SEMA3C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SEMA3C MUTATED 2 5 4
SEMA3C WILD-TYPE 68 115 96
'SEMA3C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S18829.  Gene #1869: 'SEMA3C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SEMA3C MUTATED 2 0 1 3 1 3 1 0 0
SEMA3C WILD-TYPE 39 26 29 26 38 66 19 14 22
'SEMA3C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00598 (Fisher's exact test), Q value = 0.073

Table S18830.  Gene #1869: 'SEMA3C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SEMA3C MUTATED 0 5 5 2
SEMA3C WILD-TYPE 100 67 67 119

Figure S4680.  Get High-res Image Gene #1869: 'SEMA3C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SEMA3C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00157 (Fisher's exact test), Q value = 0.033

Table S18831.  Gene #1869: 'SEMA3C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SEMA3C MUTATED 2 0 8 1 1
SEMA3C WILD-TYPE 57 75 66 118 37

Figure S4681.  Get High-res Image Gene #1869: 'SEMA3C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SEMA3C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 0.25

Table S18832.  Gene #1869: 'SEMA3C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SEMA3C MUTATED 1 7 2 1 1
SEMA3C WILD-TYPE 50 69 59 70 94
'SEMA3C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0053

Table S18833.  Gene #1869: 'SEMA3C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SEMA3C MUTATED 1 4 0 5 1 0 0 1 0
SEMA3C WILD-TYPE 68 44 39 11 52 20 21 37 50

Figure S4682.  Get High-res Image Gene #1869: 'SEMA3C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SEMA3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.35

Table S18834.  Gene #1869: 'SEMA3C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SEMA3C MUTATED 1 1 0 0 3 0
SEMA3C WILD-TYPE 12 15 14 11 8 9
'SEMA3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S18835.  Gene #1869: 'SEMA3C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SEMA3C MUTATED 0 0 1 2 1 0 1 0 0
SEMA3C WILD-TYPE 11 7 6 7 7 7 10 9 5
'GABRG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.18

Table S18836.  Gene #1870: 'GABRG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GABRG2 MUTATED 4 0 0 1 0
GABRG2 WILD-TYPE 28 18 46 26 23

Figure S4683.  Get High-res Image Gene #1870: 'GABRG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GABRG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.65

Table S18837.  Gene #1870: 'GABRG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GABRG2 MUTATED 3 1 1
GABRG2 WILD-TYPE 40 66 35
'GABRG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S18838.  Gene #1870: 'GABRG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GABRG2 MUTATED 2 6 6
GABRG2 WILD-TYPE 40 167 141
'GABRG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.81

Table S18839.  Gene #1870: 'GABRG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GABRG2 MUTATED 4 2 2
GABRG2 WILD-TYPE 58 71 73
'GABRG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S18840.  Gene #1870: 'GABRG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GABRG2 MUTATED 2 4 5
GABRG2 WILD-TYPE 68 116 95
'GABRG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.99

Table S18841.  Gene #1870: 'GABRG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GABRG2 MUTATED 1 0 2 2 1 2 1 0 2
GABRG2 WILD-TYPE 40 26 28 27 38 67 19 14 20
'GABRG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.89

Table S18842.  Gene #1870: 'GABRG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GABRG2 MUTATED 2 2 4 6
GABRG2 WILD-TYPE 98 70 68 115
'GABRG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.86

Table S18843.  Gene #1870: 'GABRG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GABRG2 MUTATED 2 4 2 3 3
GABRG2 WILD-TYPE 57 71 72 116 35
'GABRG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S18844.  Gene #1870: 'GABRG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GABRG2 MUTATED 2 3 2 4 3
GABRG2 WILD-TYPE 49 73 59 67 92
'GABRG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.8

Table S18845.  Gene #1870: 'GABRG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GABRG2 MUTATED 4 2 1 0 4 0 0 3 0
GABRG2 WILD-TYPE 65 46 38 16 49 20 21 35 50
'GABRG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18846.  Gene #1870: 'GABRG2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GABRG2 MUTATED 1 1 1 1 0 0
GABRG2 WILD-TYPE 12 15 13 10 11 9
'GABRG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.69

Table S18847.  Gene #1870: 'GABRG2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GABRG2 MUTATED 1 1 0 0 0 1 0 0 1
GABRG2 WILD-TYPE 10 6 7 9 8 6 11 9 4
'MTOR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.12

Table S18848.  Gene #1871: 'MTOR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
MTOR MUTATED 8 1 1 3 1
MTOR WILD-TYPE 24 17 45 24 22

Figure S4684.  Get High-res Image Gene #1871: 'MTOR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MTOR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.49

Table S18849.  Gene #1871: 'MTOR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
MTOR MUTATED 7 4 3
MTOR WILD-TYPE 36 63 33
'MTOR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00678 (Fisher's exact test), Q value = 0.077

Table S18850.  Gene #1871: 'MTOR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
MTOR MUTATED 2 9 22
MTOR WILD-TYPE 40 164 125

Figure S4685.  Get High-res Image Gene #1871: 'MTOR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MTOR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.58

Table S18851.  Gene #1871: 'MTOR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
MTOR MUTATED 6 4 10
MTOR WILD-TYPE 56 69 65
'MTOR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.89

Table S18852.  Gene #1871: 'MTOR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
MTOR MUTATED 4 12 7
MTOR WILD-TYPE 66 108 93
'MTOR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.85

Table S18853.  Gene #1871: 'MTOR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
MTOR MUTATED 1 3 2 3 2 6 2 3 1
MTOR WILD-TYPE 40 23 28 26 37 63 18 11 21
'MTOR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S18854.  Gene #1871: 'MTOR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
MTOR MUTATED 7 10 4 13
MTOR WILD-TYPE 93 62 68 108
'MTOR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00173 (Fisher's exact test), Q value = 0.035

Table S18855.  Gene #1871: 'MTOR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
MTOR MUTATED 0 7 12 8 7
MTOR WILD-TYPE 59 68 62 111 31

Figure S4686.  Get High-res Image Gene #1871: 'MTOR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MTOR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.38

Table S18856.  Gene #1871: 'MTOR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
MTOR MUTATED 3 12 2 8 8
MTOR WILD-TYPE 48 64 59 63 87
'MTOR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0603 (Fisher's exact test), Q value = 0.26

Table S18857.  Gene #1871: 'MTOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
MTOR MUTATED 6 2 2 4 6 3 3 6 1
MTOR WILD-TYPE 63 46 37 12 47 17 18 32 49
'MTOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00174 (Fisher's exact test), Q value = 0.035

Table S18858.  Gene #1871: 'MTOR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
MTOR MUTATED 1 0 1 0 5 0
MTOR WILD-TYPE 12 16 13 11 6 9

Figure S4687.  Get High-res Image Gene #1871: 'MTOR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MTOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 0.86

Table S18859.  Gene #1871: 'MTOR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
MTOR MUTATED 0 0 0 2 2 1 1 1 0
MTOR WILD-TYPE 11 7 7 7 6 6 10 8 5
'CD84 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.037 (Fisher's exact test), Q value = 0.2

Table S18860.  Gene #1872: 'CD84 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CD84 MUTATED 1 1 7
CD84 WILD-TYPE 41 172 140

Figure S4688.  Get High-res Image Gene #1872: 'CD84 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CD84 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.62

Table S18861.  Gene #1872: 'CD84 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CD84 MUTATED 4 1 2
CD84 WILD-TYPE 58 72 73
'CD84 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S18862.  Gene #1872: 'CD84 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CD84 MUTATED 1 2 4
CD84 WILD-TYPE 69 118 96
'CD84 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.95

Table S18863.  Gene #1872: 'CD84 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CD84 MUTATED 1 2 0 1 0 3 0 0 0
CD84 WILD-TYPE 40 24 30 28 39 66 20 14 22
'CD84 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.72

Table S18864.  Gene #1872: 'CD84 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CD84 MUTATED 1 3 3 2
CD84 WILD-TYPE 99 69 69 119
'CD84 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S18865.  Gene #1872: 'CD84 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CD84 MUTATED 2 1 3 1 2
CD84 WILD-TYPE 57 74 71 118 36
'CD84 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.98

Table S18866.  Gene #1872: 'CD84 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CD84 MUTATED 0 3 2 1 3
CD84 WILD-TYPE 51 73 59 70 92
'CD84 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S18867.  Gene #1872: 'CD84 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CD84 MUTATED 2 2 0 1 1 0 0 2 1
CD84 WILD-TYPE 67 46 39 15 52 20 21 36 49
'PRKD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S18868.  Gene #1873: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PRKD1 MUTATED 5 0 2 1 0
PRKD1 WILD-TYPE 27 18 44 26 23
'PRKD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.7

Table S18869.  Gene #1873: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PRKD1 MUTATED 4 2 2
PRKD1 WILD-TYPE 39 65 34
'PRKD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00712 (Fisher's exact test), Q value = 0.079

Table S18870.  Gene #1873: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PRKD1 MUTATED 2 5 17
PRKD1 WILD-TYPE 40 168 130

Figure S4689.  Get High-res Image Gene #1873: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PRKD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.98

Table S18871.  Gene #1873: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PRKD1 MUTATED 6 4 6
PRKD1 WILD-TYPE 56 69 69
'PRKD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S18872.  Gene #1873: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PRKD1 MUTATED 4 9 8
PRKD1 WILD-TYPE 66 111 92
'PRKD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S18873.  Gene #1873: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PRKD1 MUTATED 3 1 2 3 5 4 2 0 1
PRKD1 WILD-TYPE 38 25 28 26 34 65 18 14 21
'PRKD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.88

Table S18874.  Gene #1873: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PRKD1 MUTATED 4 6 6 8
PRKD1 WILD-TYPE 96 66 66 113
'PRKD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.92

Table S18875.  Gene #1873: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PRKD1 MUTATED 4 6 5 5 4
PRKD1 WILD-TYPE 55 69 69 114 34
'PRKD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S18876.  Gene #1873: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PRKD1 MUTATED 4 6 4 4 6
PRKD1 WILD-TYPE 47 70 57 67 89
'PRKD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S18877.  Gene #1873: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PRKD1 MUTATED 5 4 3 0 4 2 0 3 3
PRKD1 WILD-TYPE 64 44 36 16 49 18 21 35 47
'PRKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.96

Table S18878.  Gene #1873: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
PRKD1 MUTATED 1 2 2 0 0 0
PRKD1 WILD-TYPE 12 14 12 11 11 9
'PRKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S18879.  Gene #1873: 'PRKD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
PRKD1 MUTATED 1 0 0 0 0 1 2 1 0
PRKD1 WILD-TYPE 10 7 7 9 8 6 9 8 5
'TET1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.1

Table S18880.  Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TET1 MUTATED 7 1 1 3 0
TET1 WILD-TYPE 25 17 45 24 23

Figure S4690.  Get High-res Image Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TET1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0066 (Fisher's exact test), Q value = 0.076

Table S18881.  Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TET1 MUTATED 8 4 0
TET1 WILD-TYPE 35 63 36

Figure S4691.  Get High-res Image Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TET1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00039 (Fisher's exact test), Q value = 0.014

Table S18882.  Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TET1 MUTATED 2 3 18
TET1 WILD-TYPE 40 170 129

Figure S4692.  Get High-res Image Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TET1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S18883.  Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TET1 MUTATED 5 1 5
TET1 WILD-TYPE 57 72 70
'TET1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S18884.  Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TET1 MUTATED 5 6 10
TET1 WILD-TYPE 65 114 90
'TET1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 0.8

Table S18885.  Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TET1 MUTATED 1 1 1 2 5 9 1 0 1
TET1 WILD-TYPE 40 25 29 27 34 60 19 14 21
'TET1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.52

Table S18886.  Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TET1 MUTATED 3 3 6 11
TET1 WILD-TYPE 97 69 66 110
'TET1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S18887.  Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TET1 MUTATED 2 0 8 4 9
TET1 WILD-TYPE 57 75 66 115 29

Figure S4693.  Get High-res Image Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TET1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.19

Table S18888.  Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TET1 MUTATED 0 7 2 2 10
TET1 WILD-TYPE 51 69 59 69 85

Figure S4694.  Get High-res Image Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TET1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00196 (Fisher's exact test), Q value = 0.037

Table S18889.  Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TET1 MUTATED 3 3 1 3 3 0 0 8 0
TET1 WILD-TYPE 66 45 38 13 50 20 21 30 50

Figure S4695.  Get High-res Image Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TET1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.35

Table S18890.  Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
TET1 MUTATED 0 2 0 1 3 0
TET1 WILD-TYPE 13 14 14 10 8 9
'TET1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S18891.  Gene #1874: 'TET1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
TET1 MUTATED 1 1 0 1 1 0 2 0 0
TET1 WILD-TYPE 10 6 7 8 7 7 9 9 5
'FLG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00065 (Fisher's exact test), Q value = 0.019

Table S18892.  Gene #1875: 'FLG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FLG MUTATED 8 3 0 8 3
FLG WILD-TYPE 24 15 46 19 20

Figure S4696.  Get High-res Image Gene #1875: 'FLG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FLG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0247 (Fisher's exact test), Q value = 0.16

Table S18893.  Gene #1875: 'FLG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FLG MUTATED 12 6 4
FLG WILD-TYPE 31 61 32

Figure S4697.  Get High-res Image Gene #1875: 'FLG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FLG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.001 (Fisher's exact test), Q value = 0.025

Table S18894.  Gene #1875: 'FLG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FLG MUTATED 4 19 38
FLG WILD-TYPE 38 154 109

Figure S4698.  Get High-res Image Gene #1875: 'FLG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FLG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S18895.  Gene #1875: 'FLG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FLG MUTATED 14 11 12
FLG WILD-TYPE 48 62 63
'FLG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.46

Table S18896.  Gene #1875: 'FLG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FLG MUTATED 10 18 24
FLG WILD-TYPE 60 102 76
'FLG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.75

Table S18897.  Gene #1875: 'FLG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FLG MUTATED 4 4 4 3 7 16 4 5 5
FLG WILD-TYPE 37 22 26 26 32 53 16 9 17
'FLG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S18898.  Gene #1875: 'FLG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FLG MUTATED 14 14 16 20
FLG WILD-TYPE 86 58 56 101
'FLG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.002 (Fisher's exact test), Q value = 0.038

Table S18899.  Gene #1875: 'FLG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FLG MUTATED 8 15 16 11 14
FLG WILD-TYPE 51 60 58 108 24

Figure S4699.  Get High-res Image Gene #1875: 'FLG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FLG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.81

Table S18900.  Gene #1875: 'FLG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FLG MUTATED 8 16 11 8 20
FLG WILD-TYPE 43 60 50 63 75
'FLG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.46

Table S18901.  Gene #1875: 'FLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FLG MUTATED 8 7 6 5 13 4 4 11 5
FLG WILD-TYPE 61 41 33 11 40 16 17 27 45
'FLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S18902.  Gene #1875: 'FLG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
FLG MUTATED 3 1 2 2 6 2
FLG WILD-TYPE 10 15 12 9 5 7
'FLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S18903.  Gene #1875: 'FLG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
FLG MUTATED 1 1 1 3 2 1 3 2 2
FLG WILD-TYPE 10 6 6 6 6 6 8 7 3
'SCNN1G MUTATION STATUS' versus 'CN_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.94

Table S18904.  Gene #1876: 'SCNN1G MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SCNN1G MUTATED 1 3 5
SCNN1G WILD-TYPE 41 170 142
'SCNN1G MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.51

Table S18905.  Gene #1876: 'SCNN1G MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SCNN1G MUTATED 0 3 4
SCNN1G WILD-TYPE 62 70 71
'SCNN1G MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.6

Table S18906.  Gene #1876: 'SCNN1G MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SCNN1G MUTATED 0 4 4
SCNN1G WILD-TYPE 70 116 96
'SCNN1G MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S18907.  Gene #1876: 'SCNN1G MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SCNN1G MUTATED 1 0 0 1 2 3 1 0 0
SCNN1G WILD-TYPE 40 26 30 28 37 66 19 14 22
'SCNN1G MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.74

Table S18908.  Gene #1876: 'SCNN1G MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SCNN1G MUTATED 2 4 1 2
SCNN1G WILD-TYPE 98 68 71 119
'SCNN1G MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0345 (Fisher's exact test), Q value = 0.2

Table S18909.  Gene #1876: 'SCNN1G MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SCNN1G MUTATED 2 1 4 0 2
SCNN1G WILD-TYPE 57 74 70 119 36

Figure S4700.  Get High-res Image Gene #1876: 'SCNN1G MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SCNN1G MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.45

Table S18910.  Gene #1876: 'SCNN1G MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SCNN1G MUTATED 0 5 1 2 1
SCNN1G WILD-TYPE 51 71 60 69 94
'SCNN1G MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S18911.  Gene #1876: 'SCNN1G MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SCNN1G MUTATED 4 1 0 2 1 0 0 1 0
SCNN1G WILD-TYPE 65 47 39 14 52 20 21 37 50
'SLC19A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S18912.  Gene #1877: 'SLC19A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SLC19A2 MUTATED 2 0 1 0 0
SLC19A2 WILD-TYPE 30 18 45 27 23
'SLC19A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18913.  Gene #1877: 'SLC19A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SLC19A2 MUTATED 1 1 1
SLC19A2 WILD-TYPE 42 66 35
'SLC19A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.39

Table S18914.  Gene #1877: 'SLC19A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SLC19A2 MUTATED 1 1 5
SLC19A2 WILD-TYPE 41 172 142
'SLC19A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S18915.  Gene #1877: 'SLC19A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SLC19A2 MUTATED 0 1 3
SLC19A2 WILD-TYPE 62 72 72
'SLC19A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.98

Table S18916.  Gene #1877: 'SLC19A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SLC19A2 MUTATED 0 2 2
SLC19A2 WILD-TYPE 70 118 98
'SLC19A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.79

Table S18917.  Gene #1877: 'SLC19A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SLC19A2 MUTATED 0 0 0 2 0 2 0 0 0
SLC19A2 WILD-TYPE 41 26 30 27 39 67 20 14 22
'SLC19A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.61

Table S18918.  Gene #1877: 'SLC19A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SLC19A2 MUTATED 1 3 0 3
SLC19A2 WILD-TYPE 99 69 72 118
'SLC19A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S18919.  Gene #1877: 'SLC19A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SLC19A2 MUTATED 0 1 3 2 1
SLC19A2 WILD-TYPE 59 74 71 117 37
'SLC19A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.95

Table S18920.  Gene #1877: 'SLC19A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SLC19A2 MUTATED 1 3 0 1 2
SLC19A2 WILD-TYPE 50 73 61 70 93
'SLC19A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00625 (Fisher's exact test), Q value = 0.074

Table S18921.  Gene #1877: 'SLC19A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SLC19A2 MUTATED 0 0 0 3 2 0 0 1 1
SLC19A2 WILD-TYPE 69 48 39 13 51 20 21 37 49

Figure S4701.  Get High-res Image Gene #1877: 'SLC19A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TBC1D25 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00404 (Fisher's exact test), Q value = 0.057

Table S18922.  Gene #1878: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
TBC1D25 MUTATED 6 0 1 0 0
TBC1D25 WILD-TYPE 26 18 45 27 23

Figure S4702.  Get High-res Image Gene #1878: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TBC1D25 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00471 (Fisher's exact test), Q value = 0.064

Table S18923.  Gene #1878: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
TBC1D25 MUTATED 6 1 0
TBC1D25 WILD-TYPE 37 66 36

Figure S4703.  Get High-res Image Gene #1878: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TBC1D25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 0.31

Table S18924.  Gene #1878: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TBC1D25 MUTATED 1 2 8
TBC1D25 WILD-TYPE 41 171 139
'TBC1D25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S18925.  Gene #1878: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TBC1D25 MUTATED 1 1 2
TBC1D25 WILD-TYPE 61 72 73
'TBC1D25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.87

Table S18926.  Gene #1878: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TBC1D25 MUTATED 1 2 4
TBC1D25 WILD-TYPE 69 118 96
'TBC1D25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S18927.  Gene #1878: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TBC1D25 MUTATED 1 0 0 0 2 4 0 0 0
TBC1D25 WILD-TYPE 40 26 30 29 37 65 20 14 22
'TBC1D25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.5

Table S18928.  Gene #1878: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TBC1D25 MUTATED 1 1 2 7
TBC1D25 WILD-TYPE 99 71 70 114
'TBC1D25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.012

Table S18929.  Gene #1878: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TBC1D25 MUTATED 0 1 3 1 6
TBC1D25 WILD-TYPE 59 74 71 118 32

Figure S4704.  Get High-res Image Gene #1878: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TBC1D25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S18930.  Gene #1878: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TBC1D25 MUTATED 1 2 2 2 4
TBC1D25 WILD-TYPE 50 74 59 69 91
'TBC1D25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S18931.  Gene #1878: 'TBC1D25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TBC1D25 MUTATED 2 2 1 0 1 0 1 4 0
TBC1D25 WILD-TYPE 67 46 38 16 52 20 20 34 50
'PCDHGA9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.84

Table S18932.  Gene #1879: 'PCDHGA9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
PCDHGA9 MUTATED 2 0 1 2 0
PCDHGA9 WILD-TYPE 30 18 45 25 23
'PCDHGA9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.51

Table S18933.  Gene #1879: 'PCDHGA9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
PCDHGA9 MUTATED 3 2 0
PCDHGA9 WILD-TYPE 40 65 36
'PCDHGA9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0699 (Fisher's exact test), Q value = 0.29

Table S18934.  Gene #1879: 'PCDHGA9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
PCDHGA9 MUTATED 0 3 9
PCDHGA9 WILD-TYPE 42 170 138
'PCDHGA9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S18935.  Gene #1879: 'PCDHGA9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
PCDHGA9 MUTATED 2 3 2
PCDHGA9 WILD-TYPE 60 70 73
'PCDHGA9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.35

Table S18936.  Gene #1879: 'PCDHGA9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
PCDHGA9 MUTATED 0 4 6
PCDHGA9 WILD-TYPE 70 116 94
'PCDHGA9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.52

Table S18937.  Gene #1879: 'PCDHGA9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
PCDHGA9 MUTATED 0 0 0 1 2 6 0 1 0
PCDHGA9 WILD-TYPE 41 26 30 28 37 63 20 13 22
'PCDHGA9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S18938.  Gene #1879: 'PCDHGA9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
PCDHGA9 MUTATED 3 3 1 5
PCDHGA9 WILD-TYPE 97 69 71 116
'PCDHGA9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.73

Table S18939.  Gene #1879: 'PCDHGA9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
PCDHGA9 MUTATED 2 2 3 2 3
PCDHGA9 WILD-TYPE 57 73 71 117 35
'PCDHGA9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.81

Table S18940.  Gene #1879: 'PCDHGA9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
PCDHGA9 MUTATED 1 3 1 1 6
PCDHGA9 WILD-TYPE 50 73 60 70 89
'PCDHGA9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.88

Table S18941.  Gene #1879: 'PCDHGA9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
PCDHGA9 MUTATED 4 2 0 0 1 0 2 2 1
PCDHGA9 WILD-TYPE 65 46 39 16 52 20 19 36 49
'HIF1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.25

Table S18942.  Gene #1880: 'HIF1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HIF1A MUTATED 3 0 0 0 0
HIF1A WILD-TYPE 29 18 46 27 23
'HIF1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0388 (Fisher's exact test), Q value = 0.21

Table S18943.  Gene #1880: 'HIF1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HIF1A MUTATED 3 0 0
HIF1A WILD-TYPE 40 67 36

Figure S4705.  Get High-res Image Gene #1880: 'HIF1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HIF1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00124 (Fisher's exact test), Q value = 0.029

Table S18944.  Gene #1880: 'HIF1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HIF1A MUTATED 1 0 9
HIF1A WILD-TYPE 41 173 138

Figure S4706.  Get High-res Image Gene #1880: 'HIF1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HIF1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.1

Table S18945.  Gene #1880: 'HIF1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HIF1A MUTATED 6 0 2
HIF1A WILD-TYPE 56 73 73

Figure S4707.  Get High-res Image Gene #1880: 'HIF1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'HIF1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.44

Table S18946.  Gene #1880: 'HIF1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HIF1A MUTATED 1 3 7
HIF1A WILD-TYPE 69 117 93
'HIF1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S18947.  Gene #1880: 'HIF1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HIF1A MUTATED 1 0 1 1 1 6 1 0 0
HIF1A WILD-TYPE 40 26 29 28 38 63 19 14 22
'HIF1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.44

Table S18948.  Gene #1880: 'HIF1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HIF1A MUTATED 1 2 5 3
HIF1A WILD-TYPE 99 70 67 118
'HIF1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0093 (Fisher's exact test), Q value = 0.091

Table S18949.  Gene #1880: 'HIF1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HIF1A MUTATED 1 2 5 0 3
HIF1A WILD-TYPE 58 73 69 119 35

Figure S4708.  Get High-res Image Gene #1880: 'HIF1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HIF1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S18950.  Gene #1880: 'HIF1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HIF1A MUTATED 0 4 2 0 4
HIF1A WILD-TYPE 51 72 59 71 91
'HIF1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.64

Table S18951.  Gene #1880: 'HIF1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HIF1A MUTATED 1 4 0 1 1 0 0 2 1
HIF1A WILD-TYPE 68 44 39 15 52 20 21 36 49
'HIF1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0926 (Fisher's exact test), Q value = 0.33

Table S18952.  Gene #1880: 'HIF1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
HIF1A MUTATED 0 0 2 0 2 0
HIF1A WILD-TYPE 13 16 12 11 9 9
'HIF1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 0.86

Table S18953.  Gene #1880: 'HIF1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
HIF1A MUTATED 0 0 0 1 0 1 2 0 0
HIF1A WILD-TYPE 11 7 7 8 8 6 9 9 5
'ZNF521 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.4

Table S18954.  Gene #1881: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF521 MUTATED 5 0 1 2 1
ZNF521 WILD-TYPE 27 18 45 25 22
'ZNF521 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.92

Table S18955.  Gene #1881: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF521 MUTATED 4 3 2
ZNF521 WILD-TYPE 39 64 34
'ZNF521 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.096

Table S18956.  Gene #1881: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF521 MUTATED 1 8 19
ZNF521 WILD-TYPE 41 165 128

Figure S4709.  Get High-res Image Gene #1881: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF521 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.28

Table S18957.  Gene #1881: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF521 MUTATED 10 4 4
ZNF521 WILD-TYPE 52 69 71
'ZNF521 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.39

Table S18958.  Gene #1881: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF521 MUTATED 2 8 11
ZNF521 WILD-TYPE 68 112 89
'ZNF521 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.66

Table S18959.  Gene #1881: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF521 MUTATED 2 1 3 0 1 8 3 1 2
ZNF521 WILD-TYPE 39 25 27 29 38 61 17 13 20
'ZNF521 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.65

Table S18960.  Gene #1881: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF521 MUTATED 5 6 9 8
ZNF521 WILD-TYPE 95 66 63 113
'ZNF521 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.43

Table S18961.  Gene #1881: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF521 MUTATED 5 4 9 5 5
ZNF521 WILD-TYPE 54 71 65 114 33
'ZNF521 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S18962.  Gene #1881: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF521 MUTATED 2 9 6 2 9
ZNF521 WILD-TYPE 49 67 55 69 86
'ZNF521 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0526 (Fisher's exact test), Q value = 0.25

Table S18963.  Gene #1881: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF521 MUTATED 2 8 3 3 3 2 0 5 2
ZNF521 WILD-TYPE 67 40 36 13 50 18 21 33 48
'ZNF521 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S18964.  Gene #1881: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF521 MUTATED 1 2 1 2 3 0
ZNF521 WILD-TYPE 12 14 13 9 8 9
'ZNF521 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.58

Table S18965.  Gene #1881: 'ZNF521 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF521 MUTATED 0 2 1 0 1 1 3 0 1
ZNF521 WILD-TYPE 11 5 6 9 7 6 8 9 4
'TFEC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.53

Table S18966.  Gene #1882: 'TFEC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TFEC MUTATED 0 3 7
TFEC WILD-TYPE 42 170 140
'TFEC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.65

Table S18967.  Gene #1882: 'TFEC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
TFEC MUTATED 4 1 3
TFEC WILD-TYPE 58 72 72
'TFEC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.8

Table S18968.  Gene #1882: 'TFEC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TFEC MUTATED 1 3 5
TFEC WILD-TYPE 69 117 95
'TFEC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 0.87

Table S18969.  Gene #1882: 'TFEC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TFEC MUTATED 1 2 1 0 0 3 0 1 1
TFEC WILD-TYPE 40 24 29 29 39 66 20 13 21
'TFEC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.7

Table S18970.  Gene #1882: 'TFEC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TFEC MUTATED 1 4 2 3
TFEC WILD-TYPE 99 68 70 118
'TFEC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S18971.  Gene #1882: 'TFEC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TFEC MUTATED 1 3 3 2 1
TFEC WILD-TYPE 58 72 71 117 37
'TFEC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S18972.  Gene #1882: 'TFEC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TFEC MUTATED 1 4 1 0 3
TFEC WILD-TYPE 50 72 60 71 92
'TFEC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S18973.  Gene #1882: 'TFEC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TFEC MUTATED 2 2 0 1 0 1 0 1 2
TFEC WILD-TYPE 67 46 39 15 53 19 21 37 48
'NEFH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.45

Table S18974.  Gene #1883: 'NEFH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
NEFH MUTATED 1 3 8
NEFH WILD-TYPE 41 170 139
'NEFH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.47

Table S18975.  Gene #1883: 'NEFH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
NEFH MUTATED 5 1 4
NEFH WILD-TYPE 57 72 71
'NEFH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.86

Table S18976.  Gene #1883: 'NEFH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
NEFH MUTATED 1 5 5
NEFH WILD-TYPE 69 115 95
'NEFH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.67

Table S18977.  Gene #1883: 'NEFH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
NEFH MUTATED 0 1 2 0 1 4 2 1 0
NEFH WILD-TYPE 41 25 28 29 38 65 18 13 22
'NEFH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 0.31

Table S18978.  Gene #1883: 'NEFH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
NEFH MUTATED 4 6 1 2
NEFH WILD-TYPE 96 66 71 119
'NEFH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0785 (Fisher's exact test), Q value = 0.3

Table S18979.  Gene #1883: 'NEFH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
NEFH MUTATED 1 5 5 1 1
NEFH WILD-TYPE 58 70 69 118 37
'NEFH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.35

Table S18980.  Gene #1883: 'NEFH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
NEFH MUTATED 2 6 1 0 4
NEFH WILD-TYPE 49 70 60 71 91
'NEFH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.48

Table S18981.  Gene #1883: 'NEFH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
NEFH MUTATED 2 0 1 1 5 2 0 1 1
NEFH WILD-TYPE 67 48 38 15 48 18 21 37 49
'AKAP13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0583 (Fisher's exact test), Q value = 0.26

Table S18982.  Gene #1884: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
AKAP13 MUTATED 4 0 0 1 1
AKAP13 WILD-TYPE 28 18 46 26 22
'AKAP13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.37

Table S18983.  Gene #1884: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
AKAP13 MUTATED 4 1 1
AKAP13 WILD-TYPE 39 66 35
'AKAP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.17

Table S18984.  Gene #1884: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
AKAP13 MUTATED 1 5 14
AKAP13 WILD-TYPE 41 168 133

Figure S4710.  Get High-res Image Gene #1884: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AKAP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S18985.  Gene #1884: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
AKAP13 MUTATED 5 4 5
AKAP13 WILD-TYPE 57 69 70
'AKAP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.11

Table S18986.  Gene #1884: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
AKAP13 MUTATED 0 7 10
AKAP13 WILD-TYPE 70 113 90

Figure S4711.  Get High-res Image Gene #1884: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'AKAP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S18987.  Gene #1884: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
AKAP13 MUTATED 1 1 1 2 2 6 2 0 2
AKAP13 WILD-TYPE 40 25 29 27 37 63 18 14 20
'AKAP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.81

Table S18988.  Gene #1884: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
AKAP13 MUTATED 3 6 4 7
AKAP13 WILD-TYPE 97 66 68 114
'AKAP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.55

Table S18989.  Gene #1884: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
AKAP13 MUTATED 3 4 6 3 4
AKAP13 WILD-TYPE 56 71 68 116 34
'AKAP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.15

Table S18990.  Gene #1884: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
AKAP13 MUTATED 5 6 1 0 7
AKAP13 WILD-TYPE 46 70 60 71 88

Figure S4712.  Get High-res Image Gene #1884: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S18991.  Gene #1884: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
AKAP13 MUTATED 3 2 2 2 2 2 0 3 3
AKAP13 WILD-TYPE 66 46 37 14 51 18 21 35 47
'FAM133A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.74

Table S18992.  Gene #1885: 'FAM133A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FAM133A MUTATED 3 0 1 1 0
FAM133A WILD-TYPE 29 18 45 26 23
'FAM133A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S18993.  Gene #1885: 'FAM133A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FAM133A MUTATED 2 2 1
FAM133A WILD-TYPE 41 65 35
'FAM133A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.097

Table S18994.  Gene #1885: 'FAM133A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM133A MUTATED 1 1 9
FAM133A WILD-TYPE 41 172 138

Figure S4713.  Get High-res Image Gene #1885: 'FAM133A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM133A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.45

Table S18995.  Gene #1885: 'FAM133A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM133A MUTATED 3 0 3
FAM133A WILD-TYPE 59 73 72
'FAM133A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.44

Table S18996.  Gene #1885: 'FAM133A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM133A MUTATED 2 1 5
FAM133A WILD-TYPE 68 119 95
'FAM133A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.75

Table S18997.  Gene #1885: 'FAM133A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM133A MUTATED 3 0 1 0 0 3 0 1 0
FAM133A WILD-TYPE 38 26 29 29 39 66 20 13 22
'FAM133A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.79

Table S18998.  Gene #1885: 'FAM133A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM133A MUTATED 1 2 3 5
FAM133A WILD-TYPE 99 70 69 116
'FAM133A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S18999.  Gene #1885: 'FAM133A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM133A MUTATED 2 1 3 4 1
FAM133A WILD-TYPE 57 74 71 115 37
'FAM133A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S19000.  Gene #1885: 'FAM133A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM133A MUTATED 1 1 3 2 4
FAM133A WILD-TYPE 50 75 58 69 91
'FAM133A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.53

Table S19001.  Gene #1885: 'FAM133A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM133A MUTATED 2 3 0 1 1 1 2 1 0
FAM133A WILD-TYPE 67 45 39 15 52 19 19 37 50
'RAG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.65

Table S19002.  Gene #1886: 'RAG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
RAG1 MUTATED 3 0 1 2 0
RAG1 WILD-TYPE 29 18 45 25 23
'RAG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S19003.  Gene #1886: 'RAG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
RAG1 MUTATED 3 2 1
RAG1 WILD-TYPE 40 65 35
'RAG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00878 (Fisher's exact test), Q value = 0.088

Table S19004.  Gene #1886: 'RAG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
RAG1 MUTATED 1 2 11
RAG1 WILD-TYPE 41 171 136

Figure S4714.  Get High-res Image Gene #1886: 'RAG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.65

Table S19005.  Gene #1886: 'RAG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
RAG1 MUTATED 4 1 3
RAG1 WILD-TYPE 58 72 72
'RAG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.35

Table S19006.  Gene #1886: 'RAG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
RAG1 MUTATED 0 4 6
RAG1 WILD-TYPE 70 116 94
'RAG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.42

Table S19007.  Gene #1886: 'RAG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
RAG1 MUTATED 0 2 1 0 0 4 2 1 0
RAG1 WILD-TYPE 41 24 29 29 39 65 18 13 22
'RAG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.89

Table S19008.  Gene #1886: 'RAG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
RAG1 MUTATED 2 4 2 6
RAG1 WILD-TYPE 98 68 70 115
'RAG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 0.85

Table S19009.  Gene #1886: 'RAG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
RAG1 MUTATED 1 2 4 4 3
RAG1 WILD-TYPE 58 73 70 115 35
'RAG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.56

Table S19010.  Gene #1886: 'RAG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
RAG1 MUTATED 1 5 0 2 5
RAG1 WILD-TYPE 50 71 61 69 90
'RAG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.47

Table S19011.  Gene #1886: 'RAG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
RAG1 MUTATED 1 1 2 3 1 1 1 1 2
RAG1 WILD-TYPE 68 47 37 13 52 19 20 37 48
'RAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 0.34

Table S19012.  Gene #1886: 'RAG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
RAG1 MUTATED 0 0 0 1 2 0
RAG1 WILD-TYPE 13 16 14 10 9 9
'RAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S19013.  Gene #1886: 'RAG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
RAG1 MUTATED 0 0 0 1 0 1 1 0 0
RAG1 WILD-TYPE 11 7 7 8 8 6 10 9 5
'ZNF615 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.44

Table S19014.  Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
ZNF615 MUTATED 2 0 0 2 0
ZNF615 WILD-TYPE 30 18 46 25 23
'ZNF615 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S19015.  Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
ZNF615 MUTATED 2 1 1
ZNF615 WILD-TYPE 41 66 35
'ZNF615 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.15

Table S19016.  Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF615 MUTATED 2 3 12
ZNF615 WILD-TYPE 40 170 135

Figure S4715.  Get High-res Image Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF615 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0805 (Fisher's exact test), Q value = 0.31

Table S19017.  Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF615 MUTATED 5 1 7
ZNF615 WILD-TYPE 57 72 68
'ZNF615 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.098

Table S19018.  Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF615 MUTATED 0 5 10
ZNF615 WILD-TYPE 70 115 90

Figure S4716.  Get High-res Image Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZNF615 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0842 (Fisher's exact test), Q value = 0.31

Table S19019.  Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF615 MUTATED 1 0 2 2 0 9 1 0 0
ZNF615 WILD-TYPE 40 26 28 27 39 60 19 14 22
'ZNF615 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.14

Table S19020.  Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF615 MUTATED 1 8 4 4
ZNF615 WILD-TYPE 99 64 68 117

Figure S4717.  Get High-res Image Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF615 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.13

Table S19021.  Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF615 MUTATED 1 3 9 2 2
ZNF615 WILD-TYPE 58 72 65 117 36

Figure S4718.  Get High-res Image Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF615 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S19022.  Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF615 MUTATED 2 5 3 2 4
ZNF615 WILD-TYPE 49 71 58 69 91
'ZNF615 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.41

Table S19023.  Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF615 MUTATED 2 5 0 2 2 2 0 2 1
ZNF615 WILD-TYPE 67 43 39 14 51 18 21 36 49
'ZNF615 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00635 (Fisher's exact test), Q value = 0.075

Table S19024.  Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
ZNF615 MUTATED 0 0 0 0 3 0
ZNF615 WILD-TYPE 13 16 14 11 8 9

Figure S4719.  Get High-res Image Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ZNF615 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.81

Table S19025.  Gene #1887: 'ZNF615 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
ZNF615 MUTATED 0 0 0 1 0 0 2 0 0
ZNF615 WILD-TYPE 11 7 7 8 8 7 9 9 5
'ENGASE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S19026.  Gene #1888: 'ENGASE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ENGASE MUTATED 0 0 3
ENGASE WILD-TYPE 42 173 144
'ENGASE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S19027.  Gene #1888: 'ENGASE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ENGASE MUTATED 2 0 1
ENGASE WILD-TYPE 60 73 74
'ENGASE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0533 (Fisher's exact test), Q value = 0.25

Table S19028.  Gene #1888: 'ENGASE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ENGASE MUTATED 0 0 3
ENGASE WILD-TYPE 70 120 97
'ENGASE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S19029.  Gene #1888: 'ENGASE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ENGASE MUTATED 0 0 0 0 0 2 1 0 0
ENGASE WILD-TYPE 41 26 30 29 39 67 19 14 22
'ENGASE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.72

Table S19030.  Gene #1888: 'ENGASE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ENGASE MUTATED 0 1 2 1
ENGASE WILD-TYPE 100 71 70 120
'ENGASE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0266 (Fisher's exact test), Q value = 0.17

Table S19031.  Gene #1888: 'ENGASE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ENGASE MUTATED 0 0 3 0 1
ENGASE WILD-TYPE 59 75 71 119 37

Figure S4720.  Get High-res Image Gene #1888: 'ENGASE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ENGASE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.94

Table S19032.  Gene #1888: 'ENGASE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ENGASE MUTATED 0 2 1 0 1
ENGASE WILD-TYPE 51 74 60 71 94
'ENGASE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.81

Table S19033.  Gene #1888: 'ENGASE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ENGASE MUTATED 1 0 0 1 1 0 0 1 0
ENGASE WILD-TYPE 68 48 39 15 52 20 21 37 50
'CCDC144A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S19034.  Gene #1889: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CCDC144A MUTATED 2 0 0 1 0
CCDC144A WILD-TYPE 30 18 46 26 23
'CCDC144A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0388 (Fisher's exact test), Q value = 0.21

Table S19035.  Gene #1889: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CCDC144A MUTATED 3 0 0
CCDC144A WILD-TYPE 40 67 36

Figure S4721.  Get High-res Image Gene #1889: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CCDC144A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.14

Table S19036.  Gene #1889: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCDC144A MUTATED 0 1 8
CCDC144A WILD-TYPE 42 172 139

Figure S4722.  Get High-res Image Gene #1889: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC144A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S19037.  Gene #1889: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCDC144A MUTATED 3 0 3
CCDC144A WILD-TYPE 59 73 72
'CCDC144A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.43

Table S19038.  Gene #1889: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCDC144A MUTATED 1 1 5
CCDC144A WILD-TYPE 69 119 95
'CCDC144A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.45

Table S19039.  Gene #1889: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCDC144A MUTATED 0 1 0 0 0 4 2 0 0
CCDC144A WILD-TYPE 41 25 30 29 39 65 18 14 22
'CCDC144A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.9

Table S19040.  Gene #1889: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCDC144A MUTATED 1 3 2 3
CCDC144A WILD-TYPE 99 69 70 118
'CCDC144A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 0.18

Table S19041.  Gene #1889: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCDC144A MUTATED 1 2 3 0 3
CCDC144A WILD-TYPE 58 73 71 119 35

Figure S4723.  Get High-res Image Gene #1889: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC144A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.85

Table S19042.  Gene #1889: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCDC144A MUTATED 1 3 1 0 3
CCDC144A WILD-TYPE 50 73 60 71 92
'CCDC144A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.11

Table S19043.  Gene #1889: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCDC144A MUTATED 1 0 1 3 0 0 0 2 1
CCDC144A WILD-TYPE 68 48 38 13 53 20 21 36 49

Figure S4724.  Get High-res Image Gene #1889: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CCDC112 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.34

Table S19044.  Gene #1890: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CCDC112 MUTATED 3 0 0 1 0
CCDC112 WILD-TYPE 29 18 46 26 23
'CCDC112 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0516 (Fisher's exact test), Q value = 0.24

Table S19045.  Gene #1890: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CCDC112 MUTATED 3 0 1
CCDC112 WILD-TYPE 40 67 35
'CCDC112 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00682 (Fisher's exact test), Q value = 0.077

Table S19046.  Gene #1890: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CCDC112 MUTATED 0 0 7
CCDC112 WILD-TYPE 42 173 140

Figure S4725.  Get High-res Image Gene #1890: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC112 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.84

Table S19047.  Gene #1890: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CCDC112 MUTATED 1 0 2
CCDC112 WILD-TYPE 61 73 73
'CCDC112 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0535 (Fisher's exact test), Q value = 0.25

Table S19048.  Gene #1890: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CCDC112 MUTATED 0 1 5
CCDC112 WILD-TYPE 70 119 95
'CCDC112 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S19049.  Gene #1890: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CCDC112 MUTATED 1 0 0 0 2 3 0 0 0
CCDC112 WILD-TYPE 40 26 30 29 37 66 20 14 22
'CCDC112 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.58

Table S19050.  Gene #1890: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CCDC112 MUTATED 0 1 2 4
CCDC112 WILD-TYPE 100 71 70 117
'CCDC112 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0496 (Fisher's exact test), Q value = 0.24

Table S19051.  Gene #1890: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CCDC112 MUTATED 1 0 2 1 3
CCDC112 WILD-TYPE 58 75 72 118 35

Figure S4726.  Get High-res Image Gene #1890: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC112 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S19052.  Gene #1890: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CCDC112 MUTATED 0 2 1 1 2
CCDC112 WILD-TYPE 51 74 60 70 93
'CCDC112 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.55

Table S19053.  Gene #1890: 'CCDC112 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CCDC112 MUTATED 0 2 0 1 2 0 0 1 0
CCDC112 WILD-TYPE 69 46 39 15 51 20 21 37 50
'ZNF286B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.56

Table S19054.  Gene #1891: 'ZNF286B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ZNF286B MUTATED 0 1 4
ZNF286B WILD-TYPE 42 172 143
'ZNF286B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.78

Table S19055.  Gene #1891: 'ZNF286B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
ZNF286B MUTATED 3 1 1
ZNF286B WILD-TYPE 59 72 74
'ZNF286B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19056.  Gene #1891: 'ZNF286B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ZNF286B MUTATED 1 2 2
ZNF286B WILD-TYPE 69 118 98
'ZNF286B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.71

Table S19057.  Gene #1891: 'ZNF286B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ZNF286B MUTATED 1 1 0 0 0 1 1 1 0
ZNF286B WILD-TYPE 40 25 30 29 39 68 19 13 22
'ZNF286B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S19058.  Gene #1891: 'ZNF286B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ZNF286B MUTATED 1 1 2 1
ZNF286B WILD-TYPE 99 71 70 120
'ZNF286B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.95

Table S19059.  Gene #1891: 'ZNF286B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ZNF286B MUTATED 2 1 1 1 0
ZNF286B WILD-TYPE 57 74 73 118 38
'ZNF286B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.84

Table S19060.  Gene #1891: 'ZNF286B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ZNF286B MUTATED 0 1 2 0 2
ZNF286B WILD-TYPE 51 75 59 71 93
'ZNF286B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.4

Table S19061.  Gene #1891: 'ZNF286B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ZNF286B MUTATED 0 2 0 1 0 0 0 0 2
ZNF286B WILD-TYPE 69 46 39 15 53 20 21 38 48
'SFTPB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S19062.  Gene #1892: 'SFTPB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SFTPB MUTATED 0 5 4
SFTPB WILD-TYPE 42 168 143
'SFTPB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S19063.  Gene #1892: 'SFTPB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SFTPB MUTATED 3 1 3
SFTPB WILD-TYPE 59 72 72
'SFTPB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 0.16

Table S19064.  Gene #1892: 'SFTPB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SFTPB MUTATED 0 2 7
SFTPB WILD-TYPE 70 118 93

Figure S4727.  Get High-res Image Gene #1892: 'SFTPB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SFTPB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.92

Table S19065.  Gene #1892: 'SFTPB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SFTPB MUTATED 0 0 1 1 1 5 1 0 0
SFTPB WILD-TYPE 41 26 29 28 38 64 19 14 22
'SFTPB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S19066.  Gene #1892: 'SFTPB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SFTPB MUTATED 2 2 3 2
SFTPB WILD-TYPE 98 70 69 119
'SFTPB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0812 (Fisher's exact test), Q value = 0.31

Table S19067.  Gene #1892: 'SFTPB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SFTPB MUTATED 2 2 3 0 2
SFTPB WILD-TYPE 57 73 71 119 36
'SFTPB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.82

Table S19068.  Gene #1892: 'SFTPB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SFTPB MUTATED 1 4 2 1 1
SFTPB WILD-TYPE 50 72 59 70 94
'SFTPB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 0.77

Table S19069.  Gene #1892: 'SFTPB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SFTPB MUTATED 4 1 0 1 1 0 1 1 0
SFTPB WILD-TYPE 65 47 39 15 52 20 20 37 50
'SFTPB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.13

Table S19070.  Gene #1892: 'SFTPB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SFTPB MUTATED 0 0 3 0 0 0
SFTPB WILD-TYPE 13 16 11 11 11 9

Figure S4728.  Get High-res Image Gene #1892: 'SFTPB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SFTPB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S19071.  Gene #1892: 'SFTPB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SFTPB MUTATED 1 0 0 0 1 0 1 0 0
SFTPB WILD-TYPE 10 7 7 9 7 7 10 9 5
'WNT8A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S19072.  Gene #1893: 'WNT8A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
WNT8A MUTATED 0 2 3
WNT8A WILD-TYPE 42 171 144
'WNT8A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S19073.  Gene #1893: 'WNT8A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
WNT8A MUTATED 1 2 1
WNT8A WILD-TYPE 61 71 74
'WNT8A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.86

Table S19074.  Gene #1893: 'WNT8A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
WNT8A MUTATED 0 3 2
WNT8A WILD-TYPE 70 117 98
'WNT8A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.84

Table S19075.  Gene #1893: 'WNT8A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
WNT8A MUTATED 0 0 1 2 0 2 0 0 0
WNT8A WILD-TYPE 41 26 29 27 39 67 20 14 22
'WNT8A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S19076.  Gene #1893: 'WNT8A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
WNT8A MUTATED 2 1 1 1
WNT8A WILD-TYPE 98 71 71 120
'WNT8A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.87

Table S19077.  Gene #1893: 'WNT8A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
WNT8A MUTATED 0 2 2 1 0
WNT8A WILD-TYPE 59 73 72 118 38
'WNT8A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.55

Table S19078.  Gene #1893: 'WNT8A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
WNT8A MUTATED 1 3 0 0 1
WNT8A WILD-TYPE 50 73 61 71 94
'WNT8A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.94

Table S19079.  Gene #1893: 'WNT8A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
WNT8A MUTATED 2 0 1 0 1 1 0 0 0
WNT8A WILD-TYPE 67 48 38 16 52 19 21 38 50
'GPR61 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.55

Table S19080.  Gene #1894: 'GPR61 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
GPR61 MUTATED 3 0 1 0 0
GPR61 WILD-TYPE 29 18 45 27 23
'GPR61 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.8

Table S19081.  Gene #1894: 'GPR61 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
GPR61 MUTATED 1 1 2
GPR61 WILD-TYPE 42 66 34
'GPR61 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.84

Table S19082.  Gene #1894: 'GPR61 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
GPR61 MUTATED 0 3 5
GPR61 WILD-TYPE 42 170 142
'GPR61 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.59

Table S19083.  Gene #1894: 'GPR61 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
GPR61 MUTATED 2 0 3
GPR61 WILD-TYPE 60 73 72
'GPR61 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.61

Table S19084.  Gene #1894: 'GPR61 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
GPR61 MUTATED 1 1 4
GPR61 WILD-TYPE 69 119 96
'GPR61 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S19085.  Gene #1894: 'GPR61 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
GPR61 MUTATED 1 0 0 1 2 1 1 0 0
GPR61 WILD-TYPE 40 26 30 28 37 68 19 14 22
'GPR61 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.45

Table S19086.  Gene #1894: 'GPR61 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
GPR61 MUTATED 0 2 3 4
GPR61 WILD-TYPE 100 70 69 117
'GPR61 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S19087.  Gene #1894: 'GPR61 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
GPR61 MUTATED 2 1 2 3 1
GPR61 WILD-TYPE 57 74 72 116 37
'GPR61 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.77

Table S19088.  Gene #1894: 'GPR61 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
GPR61 MUTATED 1 1 0 3 4
GPR61 WILD-TYPE 50 75 61 68 91
'GPR61 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S19089.  Gene #1894: 'GPR61 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
GPR61 MUTATED 1 1 0 0 2 0 0 2 3
GPR61 WILD-TYPE 68 47 39 16 51 20 21 36 47
'GPR61 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.79

Table S19090.  Gene #1894: 'GPR61 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
GPR61 MUTATED 0 0 1 1 0 1
GPR61 WILD-TYPE 13 16 13 10 11 8
'GPR61 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S19091.  Gene #1894: 'GPR61 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
GPR61 MUTATED 1 0 0 0 1 0 1 0 0
GPR61 WILD-TYPE 10 7 7 9 7 7 10 9 5
'CACNA1H MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00077 (Fisher's exact test), Q value = 0.021

Table S19092.  Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CACNA1H MUTATED 1 5 20
CACNA1H WILD-TYPE 41 168 127

Figure S4729.  Get High-res Image Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CACNA1H MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.18

Table S19093.  Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CACNA1H MUTATED 8 3 13
CACNA1H WILD-TYPE 54 70 62

Figure S4730.  Get High-res Image Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CACNA1H MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S19094.  Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CACNA1H MUTATED 4 9 8
CACNA1H WILD-TYPE 66 111 92
'CACNA1H MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.58

Table S19095.  Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CACNA1H MUTATED 4 2 1 2 1 5 3 3 0
CACNA1H WILD-TYPE 37 24 29 27 38 64 17 11 22
'CACNA1H MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00196 (Fisher's exact test), Q value = 0.037

Table S19096.  Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CACNA1H MUTATED 3 13 6 5
CACNA1H WILD-TYPE 97 59 66 116

Figure S4731.  Get High-res Image Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CACNA1H MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S19097.  Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CACNA1H MUTATED 3 2 17 2 3
CACNA1H WILD-TYPE 56 73 57 117 35

Figure S4732.  Get High-res Image Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CACNA1H MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.13

Table S19098.  Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CACNA1H MUTATED 4 13 4 2 4
CACNA1H WILD-TYPE 47 63 57 69 91

Figure S4733.  Get High-res Image Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CACNA1H MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0013

Table S19099.  Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CACNA1H MUTATED 4 6 0 8 2 2 1 3 1
CACNA1H WILD-TYPE 65 42 39 8 51 18 20 35 49

Figure S4734.  Get High-res Image Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CACNA1H MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0497 (Fisher's exact test), Q value = 0.24

Table S19100.  Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CACNA1H MUTATED 1 0 3 2 4 0
CACNA1H WILD-TYPE 12 16 11 9 7 9

Figure S4735.  Get High-res Image Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CACNA1H MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S19101.  Gene #1895: 'CACNA1H MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CACNA1H MUTATED 0 0 0 3 2 1 2 1 1
CACNA1H WILD-TYPE 11 7 7 6 6 6 9 8 4
'G3BP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.075 (Fisher's exact test), Q value = 0.3

Table S19102.  Gene #1896: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
G3BP1 MUTATED 3 0 0 2 0
G3BP1 WILD-TYPE 29 18 46 25 23
'G3BP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00252 (Fisher's exact test), Q value = 0.043

Table S19103.  Gene #1896: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
G3BP1 MUTATED 5 0 0
G3BP1 WILD-TYPE 38 67 36

Figure S4736.  Get High-res Image Gene #1896: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'G3BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0079

Table S19104.  Gene #1896: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
G3BP1 MUTATED 0 0 11
G3BP1 WILD-TYPE 42 173 136

Figure S4737.  Get High-res Image Gene #1896: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'G3BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.44

Table S19105.  Gene #1896: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
G3BP1 MUTATED 3 0 3
G3BP1 WILD-TYPE 59 73 72
'G3BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0668 (Fisher's exact test), Q value = 0.28

Table S19106.  Gene #1896: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
G3BP1 MUTATED 0 3 6
G3BP1 WILD-TYPE 70 117 94
'G3BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.95

Table S19107.  Gene #1896: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
G3BP1 MUTATED 1 1 0 0 3 4 0 0 0
G3BP1 WILD-TYPE 40 25 30 29 36 65 20 14 22
'G3BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 0.32

Table S19108.  Gene #1896: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
G3BP1 MUTATED 0 4 2 5
G3BP1 WILD-TYPE 100 68 70 116
'G3BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00044 (Fisher's exact test), Q value = 0.015

Table S19109.  Gene #1896: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
G3BP1 MUTATED 1 1 4 0 5
G3BP1 WILD-TYPE 58 74 70 119 33

Figure S4738.  Get High-res Image Gene #1896: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'G3BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.46

Table S19110.  Gene #1896: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
G3BP1 MUTATED 0 3 2 0 5
G3BP1 WILD-TYPE 51 73 59 71 90
'G3BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00079 (Fisher's exact test), Q value = 0.021

Table S19111.  Gene #1896: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
G3BP1 MUTATED 0 2 0 3 0 0 0 4 1
G3BP1 WILD-TYPE 69 46 39 13 53 20 21 34 49

Figure S4739.  Get High-res Image Gene #1896: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SULF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.65

Table S19112.  Gene #1897: 'SULF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
SULF2 MUTATED 3 0 1 2 0
SULF2 WILD-TYPE 29 18 45 25 23
'SULF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.36

Table S19113.  Gene #1897: 'SULF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
SULF2 MUTATED 4 1 1
SULF2 WILD-TYPE 39 66 35
'SULF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 0.28

Table S19114.  Gene #1897: 'SULF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SULF2 MUTATED 0 8 13
SULF2 WILD-TYPE 42 165 134
'SULF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.7

Table S19115.  Gene #1897: 'SULF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SULF2 MUTATED 6 3 7
SULF2 WILD-TYPE 56 70 68
'SULF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.12

Table S19116.  Gene #1897: 'SULF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SULF2 MUTATED 0 10 9
SULF2 WILD-TYPE 70 110 91

Figure S4740.  Get High-res Image Gene #1897: 'SULF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SULF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.71

Table S19117.  Gene #1897: 'SULF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SULF2 MUTATED 1 0 2 1 2 8 3 1 1
SULF2 WILD-TYPE 40 26 28 28 37 61 17 13 21
'SULF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.38

Table S19118.  Gene #1897: 'SULF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SULF2 MUTATED 4 7 7 4
SULF2 WILD-TYPE 96 65 65 117
'SULF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0445 (Fisher's exact test), Q value = 0.22

Table S19119.  Gene #1897: 'SULF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SULF2 MUTATED 3 5 8 2 4
SULF2 WILD-TYPE 56 70 66 117 34

Figure S4741.  Get High-res Image Gene #1897: 'SULF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SULF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.48

Table S19120.  Gene #1897: 'SULF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SULF2 MUTATED 4 8 3 1 5
SULF2 WILD-TYPE 47 68 58 70 90
'SULF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.43

Table S19121.  Gene #1897: 'SULF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SULF2 MUTATED 6 6 1 2 1 2 0 2 1
SULF2 WILD-TYPE 63 42 38 14 52 18 21 36 49
'SULF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.62

Table S19122.  Gene #1897: 'SULF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
SULF2 MUTATED 1 0 0 1 2 1
SULF2 WILD-TYPE 12 16 14 10 9 8
'SULF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S19123.  Gene #1897: 'SULF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
SULF2 MUTATED 1 0 0 1 0 0 2 1 0
SULF2 WILD-TYPE 10 7 7 8 8 7 9 8 5
'KDR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S19124.  Gene #1898: 'KDR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
KDR MUTATED 4 0 0 2 0
KDR WILD-TYPE 28 18 46 25 23

Figure S4742.  Get High-res Image Gene #1898: 'KDR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'KDR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.36

Table S19125.  Gene #1898: 'KDR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
KDR MUTATED 4 1 1
KDR WILD-TYPE 39 66 35
'KDR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00924 (Fisher's exact test), Q value = 0.09

Table S19126.  Gene #1898: 'KDR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KDR MUTATED 5 6 17
KDR WILD-TYPE 37 167 130

Figure S4743.  Get High-res Image Gene #1898: 'KDR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KDR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.95

Table S19127.  Gene #1898: 'KDR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KDR MUTATED 8 6 7
KDR WILD-TYPE 54 67 68
'KDR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 0.27

Table S19128.  Gene #1898: 'KDR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KDR MUTATED 1 11 10
KDR WILD-TYPE 69 109 90
'KDR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.59

Table S19129.  Gene #1898: 'KDR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KDR MUTATED 1 0 3 5 2 8 1 1 1
KDR WILD-TYPE 40 26 27 24 37 61 19 13 21
'KDR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.94

Table S19130.  Gene #1898: 'KDR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KDR MUTATED 7 7 7 7
KDR WILD-TYPE 93 65 65 114
'KDR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.096

Table S19131.  Gene #1898: 'KDR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KDR MUTATED 4 9 8 2 5
KDR WILD-TYPE 55 66 66 117 33

Figure S4744.  Get High-res Image Gene #1898: 'KDR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KDR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.67

Table S19132.  Gene #1898: 'KDR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KDR MUTATED 3 10 5 3 6
KDR WILD-TYPE 48 66 56 68 89
'KDR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S19133.  Gene #1898: 'KDR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KDR MUTATED 6 5 4 1 5 1 1 3 1
KDR WILD-TYPE 63 43 35 15 48 19 20 35 49
'KDR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.92

Table S19134.  Gene #1898: 'KDR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
KDR MUTATED 2 1 1 0 2 0
KDR WILD-TYPE 11 15 13 11 9 9
'KDR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S19135.  Gene #1898: 'KDR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
KDR MUTATED 1 0 0 2 0 0 2 1 0
KDR WILD-TYPE 10 7 7 7 8 7 9 8 5
'CPB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.22

Table S19136.  Gene #1899: 'CPB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CPB2 MUTATED 2 1 6
CPB2 WILD-TYPE 40 172 141

Figure S4745.  Get High-res Image Gene #1899: 'CPB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CPB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.84

Table S19137.  Gene #1899: 'CPB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CPB2 MUTATED 3 1 3
CPB2 WILD-TYPE 59 72 72
'CPB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S19138.  Gene #1899: 'CPB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CPB2 MUTATED 2 5 2
CPB2 WILD-TYPE 68 115 98
'CPB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.75

Table S19139.  Gene #1899: 'CPB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CPB2 MUTATED 2 2 1 2 0 1 1 0 0
CPB2 WILD-TYPE 39 24 29 27 39 68 19 14 22
'CPB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.9

Table S19140.  Gene #1899: 'CPB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CPB2 MUTATED 1 2 3 3
CPB2 WILD-TYPE 99 70 69 118
'CPB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S19141.  Gene #1899: 'CPB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CPB2 MUTATED 2 1 3 2 1
CPB2 WILD-TYPE 57 74 71 117 37
'CPB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S19142.  Gene #1899: 'CPB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CPB2 MUTATED 1 3 1 1 3
CPB2 WILD-TYPE 50 73 60 70 92
'CPB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0623 (Fisher's exact test), Q value = 0.27

Table S19143.  Gene #1899: 'CPB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CPB2 MUTATED 1 1 0 3 1 1 0 1 1
CPB2 WILD-TYPE 68 47 39 13 52 19 21 37 49
'CPB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.17

Table S19144.  Gene #1899: 'CPB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 13 16 14 11 11 9
CPB2 MUTATED 0 0 1 0 3 0
CPB2 WILD-TYPE 13 16 13 11 8 9

Figure S4746.  Get High-res Image Gene #1899: 'CPB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CPB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0619 (Fisher's exact test), Q value = 0.27

Table S19145.  Gene #1899: 'CPB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 11 7 7 9 8 7 11 9 5
CPB2 MUTATED 0 0 0 2 2 0 0 0 0
CPB2 WILD-TYPE 11 7 7 7 6 7 11 9 5
'TMEM20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.44

Table S19146.  Gene #1900: 'TMEM20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
TMEM20 MUTATED 0 0 3
TMEM20 WILD-TYPE 42 173 144
'TMEM20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19147.  Gene #1900: 'TMEM20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
TMEM20 MUTATED 1 1 1
TMEM20 WILD-TYPE 69 119 99
'TMEM20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S19148.  Gene #1900: 'TMEM20 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
TMEM20 MUTATED 0 0 1 1 0 1 0 0 0
TMEM20 WILD-TYPE 41 26 29 28 39 68 20 14 22
'TMEM20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.86

Table S19149.  Gene #1900: 'TMEM20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
TMEM20 MUTATED 0 0 1 2
TMEM20 WILD-TYPE 100 72 71 119
'TMEM20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.017 (Fisher's exact test), Q value = 0.13

Table S19150.  Gene #1900: 'TMEM20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
TMEM20 MUTATED 0 0 1 0 2
TMEM20 WILD-TYPE 59 75 73 119 36

Figure S4747.  Get High-res Image Gene #1900: 'TMEM20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TMEM20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S19151.  Gene #1900: 'TMEM20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
TMEM20 MUTATED 0 1 0 0 2
TMEM20 WILD-TYPE 51 75 61 71 93
'TMEM20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.66

Table S19152.  Gene #1900: 'TMEM20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
TMEM20 MUTATED 1 0 0 0 0 0 0 2 0
TMEM20 WILD-TYPE 68 48 39 16 53 20 21 36 50
'KCNQ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 0.21

Table S19153.  Gene #1901: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
KCNQ1 MUTATED 0 1 7
KCNQ1 WILD-TYPE 42 172 140

Figure S4748.  Get High-res Image Gene #1901: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KCNQ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S19154.  Gene #1901: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
KCNQ1 MUTATED 3 0 4
KCNQ1 WILD-TYPE 59 73 71
'KCNQ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.12

Table S19155.  Gene #1901: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
KCNQ1 MUTATED 0 1 6
KCNQ1 WILD-TYPE 70 119 94

Figure S4749.  Get High-res Image Gene #1901: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KCNQ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.56

Table S19156.  Gene #1901: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
KCNQ1 MUTATED 0 0 0 1 0 5 1 0 0
KCNQ1 WILD-TYPE 41 26 30 28 39 64 19 14 22
'KCNQ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.41

Table S19157.  Gene #1901: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
KCNQ1 MUTATED 1 4 2 1
KCNQ1 WILD-TYPE 99 68 70 120
'KCNQ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.12

Table S19158.  Gene #1901: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
KCNQ1 MUTATED 0 2 5 0 1
KCNQ1 WILD-TYPE 59 73 69 119 37

Figure S4750.  Get High-res Image Gene #1901: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KCNQ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00287 (Fisher's exact test), Q value = 0.046

Table S19159.  Gene #1901: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
KCNQ1 MUTATED 0 6 0 0 1
KCNQ1 WILD-TYPE 51 70 61 71 94

Figure S4751.  Get High-res Image Gene #1901: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KCNQ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.67

Table S19160.  Gene #1901: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
KCNQ1 MUTATED 2 1 0 2 1 0 0 0 1
KCNQ1 WILD-TYPE 67 47 39 14 52 20 21 38 49
'CAMK2G MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 0.25

Table S19161.  Gene #1902: 'CAMK2G MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
CAMK2G MUTATED 3 0 0 0 0
CAMK2G WILD-TYPE 29 18 46 27 23
'CAMK2G MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0381 (Fisher's exact test), Q value = 0.21

Table S19162.  Gene #1902: 'CAMK2G MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
CAMK2G MUTATED 3 0 0
CAMK2G WILD-TYPE 40 67 36

Figure S4752.  Get High-res Image Gene #1902: 'CAMK2G MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CAMK2G MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.12

Table S19163.  Gene #1902: 'CAMK2G MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
CAMK2G MUTATED 0 2 10
CAMK2G WILD-TYPE 42 171 137

Figure S4753.  Get High-res Image Gene #1902: 'CAMK2G MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CAMK2G MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.62

Table S19164.  Gene #1902: 'CAMK2G MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
CAMK2G MUTATED 3 1 5
CAMK2G WILD-TYPE 59 72 70
'CAMK2G MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.51

Table S19165.  Gene #1902: 'CAMK2G MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
CAMK2G MUTATED 3 2 6
CAMK2G WILD-TYPE 67 118 94
'CAMK2G MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S19166.  Gene #1902: 'CAMK2G MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
CAMK2G MUTATED 1 2 1 1 2 2 1 0 1
CAMK2G WILD-TYPE 40 24 29 28 37 67 19 14 21
'CAMK2G MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.42

Table S19167.  Gene #1902: 'CAMK2G MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
CAMK2G MUTATED 2 6 1 4
CAMK2G WILD-TYPE 98 66 71 117
'CAMK2G MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00396 (Fisher's exact test), Q value = 0.056

Table S19168.  Gene #1902: 'CAMK2G MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
CAMK2G MUTATED 1 3 5 0 4
CAMK2G WILD-TYPE 58 72 69 119 34

Figure S4754.  Get High-res Image Gene #1902: 'CAMK2G MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CAMK2G MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.68

Table S19169.  Gene #1902: 'CAMK2G MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
CAMK2G MUTATED 0 5 1 2 4
CAMK2G WILD-TYPE 51 71 60 69 91
'CAMK2G MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0612 (Fisher's exact test), Q value = 0.27

Table S19170.  Gene #1902: 'CAMK2G MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
CAMK2G MUTATED 2 1 1 3 0 0 0 3 2
CAMK2G WILD-TYPE 67 47 38 13 53 20 21 35 48
'SAMD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.52

Table S19171.  Gene #1903: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
SAMD11 MUTATED 1 1 4
SAMD11 WILD-TYPE 41 172 143
'SAMD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 0.98

Table S19172.  Gene #1903: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
SAMD11 MUTATED 2 1 1
SAMD11 WILD-TYPE 60 72 74
'SAMD11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S19173.  Gene #1903: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
SAMD11 MUTATED 1 2 2
SAMD11 WILD-TYPE 69 118 98
'SAMD11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 0.84

Table S19174.  Gene #1903: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
SAMD11 MUTATED 0 1 0 0 2 1 0 0 1
SAMD11 WILD-TYPE 41 25 30 29 37 68 20 14 21
'SAMD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.47

Table S19175.  Gene #1903: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
SAMD11 MUTATED 0 1 3 2
SAMD11 WILD-TYPE 100 71 69 119
'SAMD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 0.17

Table S19176.  Gene #1903: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
SAMD11 MUTATED 2 0 2 0 2
SAMD11 WILD-TYPE 57 75 72 119 36

Figure S4755.  Get High-res Image Gene #1903: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SAMD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 0.97

Table S19177.  Gene #1903: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
SAMD11 MUTATED 1 1 2 0 2
SAMD11 WILD-TYPE 50 75 59 71 93
'SAMD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.47

Table S19178.  Gene #1903: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
SAMD11 MUTATED 0 1 0 1 2 0 0 2 0
SAMD11 WILD-TYPE 69 47 39 15 51 20 21 36 50
'FAM83D MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.49

Table S19179.  Gene #1904: 'FAM83D MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
FAM83D MUTATED 1 0 0 2 0
FAM83D WILD-TYPE 31 18 46 25 23
'FAM83D MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.79

Table S19180.  Gene #1904: 'FAM83D MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
FAM83D MUTATED 2 1 0
FAM83D WILD-TYPE 41 66 36
'FAM83D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.17

Table S19181.  Gene #1904: 'FAM83D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
FAM83D MUTATED 0 2 9
FAM83D WILD-TYPE 42 171 138

Figure S4756.  Get High-res Image Gene #1904: 'FAM83D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM83D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.39

Table S19182.  Gene #1904: 'FAM83D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
FAM83D MUTATED 0 2 5
FAM83D WILD-TYPE 62 71 70
'FAM83D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S19183.  Gene #1904: 'FAM83D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
FAM83D MUTATED 1 5 4
FAM83D WILD-TYPE 69 115 96
'FAM83D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.88

Table S19184.  Gene #1904: 'FAM83D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
FAM83D MUTATED 0 0 2 1 3 3 1 0 0
FAM83D WILD-TYPE 41 26 28 28 36 66 19 14 22
'FAM83D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0959 (Fisher's exact test), Q value = 0.34

Table S19185.  Gene #1904: 'FAM83D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
FAM83D MUTATED 2 5 0 4
FAM83D WILD-TYPE 98 67 72 117
'FAM83D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0405 (Fisher's exact test), Q value = 0.21

Table S19186.  Gene #1904: 'FAM83D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
FAM83D MUTATED 0 3 4 1 3
FAM83D WILD-TYPE 59 72 70 118 35

Figure S4757.  Get High-res Image Gene #1904: 'FAM83D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM83D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0758 (Fisher's exact test), Q value = 0.3

Table S19187.  Gene #1904: 'FAM83D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
FAM83D MUTATED 3 3 0 0 5
FAM83D WILD-TYPE 48 73 61 71 90
'FAM83D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00466 (Fisher's exact test), Q value = 0.063

Table S19188.  Gene #1904: 'FAM83D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
FAM83D MUTATED 2 0 1 2 0 2 0 4 0
FAM83D WILD-TYPE 67 48 38 14 53 18 21 34 50

Figure S4758.  Get High-res Image Gene #1904: 'FAM83D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ALG9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S19189.  Gene #1905: 'ALG9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
ALG9 MUTATED 0 1 2
ALG9 WILD-TYPE 42 172 145
'ALG9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S19190.  Gene #1905: 'ALG9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
ALG9 MUTATED 0 2 1
ALG9 WILD-TYPE 70 118 99
'ALG9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S19191.  Gene #1905: 'ALG9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
ALG9 MUTATED 0 0 0 0 1 1 0 0 1
ALG9 WILD-TYPE 41 26 30 29 38 68 20 14 21
'ALG9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.57

Table S19192.  Gene #1905: 'ALG9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
ALG9 MUTATED 0 0 2 1
ALG9 WILD-TYPE 100 72 70 120
'ALG9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.62

Table S19193.  Gene #1905: 'ALG9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
ALG9 MUTATED 0 1 1 0 1
ALG9 WILD-TYPE 59 74 73 119 37
'ALG9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S19194.  Gene #1905: 'ALG9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
ALG9 MUTATED 1 1 0 0 1
ALG9 WILD-TYPE 50 75 61 71 94
'ALG9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.99

Table S19195.  Gene #1905: 'ALG9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
ALG9 MUTATED 0 1 0 0 1 0 0 1 0
ALG9 WILD-TYPE 69 47 39 16 52 20 21 37 50
'BCL7A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.89

Table S19196.  Gene #1906: 'BCL7A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
BCL7A MUTATED 2 0 1 0 0
BCL7A WILD-TYPE 30 18 45 27 23
'BCL7A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.79

Table S19197.  Gene #1906: 'BCL7A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
BCL7A MUTATED 2 1 0
BCL7A WILD-TYPE 41 66 36
'BCL7A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S19198.  Gene #1906: 'BCL7A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
BCL7A MUTATED 0 2 3
BCL7A WILD-TYPE 42 171 144
'BCL7A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S19199.  Gene #1906: 'BCL7A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
BCL7A MUTATED 1 1 2
BCL7A WILD-TYPE 69 119 98
'BCL7A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S19200.  Gene #1906: 'BCL7A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
BCL7A MUTATED 0 0 1 0 1 2 0 0 0
BCL7A WILD-TYPE 41 26 29 29 38 67 20 14 22
'BCL7A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.58

Table S19201.  Gene #1906: 'BCL7A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
BCL7A MUTATED 1 0 0 4
BCL7A WILD-TYPE 99 72 72 117
'BCL7A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.11

Table S19202.  Gene #1906: 'BCL7A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
BCL7A MUTATED 1 0 0 1 3
BCL7A WILD-TYPE 58 75 74 118 35

Figure S4759.  Get High-res Image Gene #1906: 'BCL7A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BCL7A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 0.29

Table S19203.  Gene #1906: 'BCL7A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
BCL7A MUTATED 1 0 0 0 4
BCL7A WILD-TYPE 50 76 61 71 91
'BCL7A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 0.21

Table S19204.  Gene #1906: 'BCL7A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
BCL7A MUTATED 0 0 0 0 1 0 1 3 0
BCL7A WILD-TYPE 69 48 39 16 52 20 20 35 50

Figure S4760.  Get High-res Image Gene #1906: 'BCL7A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HOXA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0547 (Fisher's exact test), Q value = 0.25

Table S19205.  Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 32 18 46 27 23
HOXA1 MUTATED 3 0 0 0 0
HOXA1 WILD-TYPE 29 18 46 27 23
'HOXA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0383 (Fisher's exact test), Q value = 0.21

Table S19206.  Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 67 36
HOXA1 MUTATED 3 0 0
HOXA1 WILD-TYPE 40 67 36

Figure S4761.  Get High-res Image Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HOXA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00118 (Fisher's exact test), Q value = 0.028

Table S19207.  Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 173 147
HOXA1 MUTATED 1 0 9
HOXA1 WILD-TYPE 41 173 138

Figure S4762.  Get High-res Image Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'HOXA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.41

Table S19208.  Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 73 75
HOXA1 MUTATED 3 0 4
HOXA1 WILD-TYPE 59 73 71
'HOXA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00085 (Fisher's exact test), Q value = 0.022

Table S19209.  Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 70 120 100
HOXA1 MUTATED 0 1 9
HOXA1 WILD-TYPE 70 119 91

Figure S4763.  Get High-res Image Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'HOXA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 0.85

Table S19210.  Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 41 26 30 29 39 69 20 14 22
HOXA1 MUTATED 1 0 0 1 1 6 1 0 0
HOXA1 WILD-TYPE 40 26 30 28 38 63 19 14 22
'HOXA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00816 (Fisher's exact test), Q value = 0.085

Table S19211.  Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 100 72 72 121
HOXA1 MUTATED 0 6 1 3
HOXA1 WILD-TYPE 100 66 71 118

Figure S4764.  Get High-res Image Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HOXA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.11

Table S19212.  Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 75 74 119 38
HOXA1 MUTATED 0 1 6 1 2
HOXA1 WILD-TYPE 59 74 68 118 36

Figure S4765.  Get High-res Image Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HOXA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00982 (Fisher's exact test), Q value = 0.093

Table S19213.  Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 51 76 61 71 95
HOXA1 MUTATED 0 6 0 0 4
HOXA1 WILD-TYPE 51 70 61 71 91

Figure S4766.  Get High-res Image Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HOXA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0362 (Fisher's exact test), Q value = 0.2

Table S19214.  Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 69 48 39 16 53 20 21 38 50
HOXA1 MUTATED 2 1 0 3 0 0 1 2 1
HOXA1 WILD-TYPE 67 47 39 13 53 20 20 36 49

Figure S4767.  Get High-res Image Gene #1907: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

Methods & Data
Input

  • Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline

  • Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/COAD-TP/22596984/transformed.cor.cli.txt

  • Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/COAD-TP/22541003/COAD-TP.transferedmergedcluster.txt

  • Number of patients = 367

  • Number of significantly mutated genes = 1907

  • Number of Molecular subtypes = 12

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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